AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0730720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0730720 MtrunA17_Chr5g0424661 96.656 628 17 3 1 625 1 627 0.0 1212
Msa0730720 MtrunA17_Chr3g0115191 66.981 636 181 12 1 625 1 618 0.0 740
Msa0730720 MtrunA17_Chr2g0305081 69.697 66 20 0 269 334 2 67 3.70e-21 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0730720 AT1G36990.1 48.264 605 270 18 1 592 1 575 2.82e-137 413
Msa0730720 AT4G08510.1 40.864 602 293 19 1 591 1 550 8.94e-102 320
Msa0730720 AT4G08510.2 40.068 589 295 17 1 579 1 541 4.02e-98 311

Find 209 sgRNAs with CRISPR-Local

Find 517 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATCGTTTCGTTTCTCTTT+AGG 0.151394 5_1:+40541715 Msa0730720:five_prime_UTR
TGCTGGGAAATTGCATCTTT+TGG 0.154844 5_1:+40548074 Msa0730720:three_prime_UTR
TCTGGGAGAGTTTAGGTTAC+TGG 0.175561 5_1:-40546912 None:intergenic
TGAAAGAAAGGCGATGATTT+AGG 0.188109 5_1:+40547875 Msa0730720:three_prime_UTR
CATTTCTTCGTTCTCTTGGC+TGG 0.213676 5_1:+40547287 Msa0730720:CDS
TATCGTTTCGTTTCTCTTTA+GGG 0.216142 5_1:+40541716 Msa0730720:five_prime_UTR
GCTTCTTTGGATTTGAAATT+AGG 0.224763 5_1:+40546947 Msa0730720:CDS
TTGGTGCTTGCTCGTTCTTT+AGG 0.232783 5_1:+40541830 Msa0730720:five_prime_UTR
ATCCCAATGGTCTCCAAAAT+TGG 0.234336 5_1:-40543070 None:intergenic
GAGAAAGATAGATCCAATTT+TGG 0.242863 5_1:+40543057 Msa0730720:CDS
GCAGAGGTACCTTCGGTAAT+TGG 0.244309 5_1:+40543462 Msa0730720:CDS
CAAATATTGCAATAAGTTAC+AGG 0.244429 5_1:+40547940 Msa0730720:three_prime_UTR
CAAACTATTGCTGCAACTTC+TGG 0.254371 5_1:+40543516 Msa0730720:CDS
CACAAACGTGCGTTTCTTCT+AGG 0.255455 5_1:+40541806 Msa0730720:five_prime_UTR
AGAGCGGAAGCCAGCTTCTT+TGG 0.255786 5_1:+40546934 Msa0730720:CDS
AGATCTGTTCCTACTGTTAT+TGG 0.257937 5_1:-40542884 None:intergenic
AAGCAGGGAATAGCTGAAAT+TGG 0.268189 5_1:+40543342 Msa0730720:CDS
GAAAGAATTTCTGTTAGTTT+TGG 0.269767 5_1:-40541499 None:intergenic
TGGTGCTTGCTCGTTCTTTA+GGG 0.280727 5_1:+40541831 Msa0730720:five_prime_UTR
TTCAATGGTTTCCAGGAAAC+AGG 0.285320 5_1:+40543164 Msa0730720:CDS
ATTGAATTTGATAGTGAAAT+TGG 0.286058 5_1:+40541904 Msa0730720:five_prime_UTR
CCAGCACTTCTCAACCATTC+TGG 0.294306 5_1:-40542032 None:intergenic
GCGGGTTTCATCCCCTAGTT+TGG 0.302915 5_1:+40543365 Msa0730720:CDS
GTAAACTTCCCAGATGTCTT+TGG 0.311170 5_1:-40546749 None:intergenic
GAAAGAAAGGCGATGATTTA+GGG 0.318223 5_1:+40547876 Msa0730720:three_prime_UTR
CTGGGAGAGTTTAGGTTACT+GGG 0.319441 5_1:-40546911 None:intergenic
TTAGGCATGGATGGTGTTAC+TGG 0.320673 5_1:-40543799 None:intergenic
AAATCAGTGGTGTGGGAAAA+TGG 0.326588 5_1:+40546779 Msa0730720:CDS
CGCCTTTCTTTCAGAACAAA+AGG 0.327983 5_1:-40547865 None:intergenic
GAAACCATCTGGCCAGAATC+TGG 0.332094 5_1:-40547073 None:intergenic
TCTCTGCTGTGGTAGGGTGC+TGG 0.336225 5_1:+40548057 Msa0730720:three_prime_UTR
CCGGCTCTTCACTTGAGAAA+TGG 0.341266 5_1:-40546993 None:intergenic
GTTGGCAGTTCCGCTTTGAT+TGG 0.342329 5_1:+40543414 Msa0730720:CDS
AGAAGCTGGCTTCCGCTCTC+TGG 0.343567 5_1:-40546930 None:intergenic
TCCGCTCTCTGGGAGAGTTT+AGG 0.350396 5_1:-40546919 None:intergenic
TAAAGTCTCACCCTGTTTCC+TGG 0.360032 5_1:-40543175 None:intergenic
GCTGCATTTCTTCGTTCTCT+TGG 0.367493 5_1:+40547283 Msa0730720:CDS
TTGCAATATTTGCAAATGTA+TGG 0.369280 5_1:-40547929 None:intergenic
AACACAAAGGCTTGAGGAAC+TGG 0.371910 5_1:+40543750 Msa0730720:CDS
GAACATCGTCAGCAAGTTCT+AGG 0.374020 5_1:+40542956 Msa0730720:CDS
GTGTGTGAATAGAAATTATA+GGG 0.379083 5_1:-40541634 None:intergenic
AAATTCTGCAAAGCTCTTCA+TGG 0.381069 5_1:-40547210 None:intergenic
GTTGATGTTCCAAAGACATC+TGG 0.381373 5_1:+40546740 Msa0730720:CDS
TACTGCAGCTGGTCTTAATA+TGG 0.381391 5_1:+40543554 Msa0730720:CDS
CTCTGCTGTGGTAGGGTGCT+GGG 0.383414 5_1:+40548058 Msa0730720:three_prime_UTR
ATCATGTACAGTGTTAGTTA+TGG 0.386951 5_1:+40541986 Msa0730720:exon
CGGGTTTCATCCCCTAGTTT+GGG 0.387477 5_1:+40543366 Msa0730720:CDS
GTTCTCATTCAATGGTTTCC+AGG 0.392981 5_1:+40543157 Msa0730720:CDS
AAGTTAATGGGCTGGCAGGT+AGG 0.403792 5_1:+40548024 Msa0730720:three_prime_UTR
TTTGAAATTAGGCACTACTT+TGG 0.405443 5_1:+40546958 Msa0730720:CDS
GTCCGCAATCTGTTGGCAAT+GGG 0.406887 5_1:+40547155 Msa0730720:CDS
AGTTAATGGGCTGGCAGGTA+GGG 0.409446 5_1:+40548025 Msa0730720:three_prime_UTR
ACCATCCATGCCTAAGGCTT+TGG 0.412564 5_1:+40543807 Msa0730720:CDS
CGATTATTTAGTGATATGAA+TGG 0.412574 5_1:+40541865 Msa0730720:five_prime_UTR
GTGAAATTGGTGCGATTTCG+CGG 0.412612 5_1:+40541917 Msa0730720:five_prime_UTR
AGAAGCATAAGAAGAAAGAA+AGG 0.416300 5_1:-40541749 None:intergenic
AATGCAGCTTCTTCCTCATC+TGG 0.417042 5_1:-40547268 None:intergenic
GTGCTTGGAGAACAATGAAA+TGG 0.424568 5_1:-40548271 None:intergenic
AGCACATCAAGCTTCAGATC+TGG 0.426308 5_1:-40547782 None:intergenic
AGAAGTGCTGGAAGTGTTGT+TGG 0.429635 5_1:+40542044 Msa0730720:CDS
TCCGCTTTGATTGGAGGGGA+GGG 0.430222 5_1:+40543423 Msa0730720:CDS
AAAGCACTTATTCGTTAACT+AGG 0.436184 5_1:-40541780 None:intergenic
CTAGCAGTGGCACCCAAACT+AGG 0.436866 5_1:-40543378 None:intergenic
AACAGATCTTCGAAGAATAC+TGG 0.441310 5_1:+40542898 Msa0730720:CDS
TTACTATTAGCATAATTTGT+CGG 0.442373 5_1:-40546833 None:intergenic
AGCAACCACAACAATGGAAA+TGG 0.444694 5_1:+40543237 Msa0730720:CDS
AAGAATTTCCAATGTTAAGC+AGG 0.445183 5_1:-40547976 None:intergenic
ATTGCGGCGTTCTCATTCAA+TGG 0.445272 5_1:+40543149 Msa0730720:CDS
AAATTATGCTAATAGTAAAT+CGG 0.449830 5_1:+40546838 Msa0730720:CDS
GCAGATTGAAGAAATCATTC+CGG 0.450034 5_1:-40547012 None:intergenic
TGTGTGTGAATAGAAATTAT+AGG 0.453726 5_1:-40541635 None:intergenic
GCACATCAAGCTTCAGATCT+GGG 0.454634 5_1:-40547781 None:intergenic
ACAAACGTGCGTTTCTTCTA+GGG 0.456104 5_1:+40541807 Msa0730720:five_prime_UTR
AGGTTACTGGGGTTCCTCAC+CGG 0.462758 5_1:-40546899 None:intergenic
ATTTCTTCGTTCTCTTGGCT+GGG 0.465471 5_1:+40547288 Msa0730720:CDS
GATGGTTTCATCTCCTACAT+TGG 0.466569 5_1:+40547087 Msa0730720:CDS
ATTTCCAATGTTAAGCAGGC+AGG 0.466837 5_1:-40547972 None:intergenic
GGCAGTTCCGCTTTGATTGG+AGG 0.469871 5_1:+40543417 Msa0730720:CDS
ATCTGGATAAACCGTAGCTC+TGG 0.471625 5_1:-40547251 None:intergenic
TCTAGGAGGGGTTCTATCAA+TGG 0.472039 5_1:+40542973 Msa0730720:CDS
TTGAAACATCCTTGGAAGTA+GGG 0.473117 5_1:-40546808 None:intergenic
AGTGTCAGCTGCAACTCTAC+GGG 0.473350 5_1:-40543199 None:intergenic
TGTCTTTGGAACATCAACTT+TGG 0.473970 5_1:-40546735 None:intergenic
GATTATTTAGTGATATGAAT+GGG 0.474977 5_1:+40541866 Msa0730720:five_prime_UTR
TGGAAATGGCGCACTTTCTG+TGG 0.475372 5_1:+40543251 Msa0730720:CDS
CACACTCAAGCTATGTATTG+AGG 0.479145 5_1:+40547675 Msa0730720:CDS
CCGCTTTGATTGGAGGGGAG+GGG 0.480083 5_1:+40543424 Msa0730720:CDS
TGTCGGATTTGAAACATCCT+TGG 0.481560 5_1:-40546816 None:intergenic
TTTGAAACATCCTTGGAAGT+AGG 0.482039 5_1:-40546809 None:intergenic
GTTGCAGCTGACACTAAATC+AGG 0.482930 5_1:+40543207 Msa0730720:CDS
ACTAGGGGCTGAAGAGAAGC+AGG 0.483235 5_1:+40543326 Msa0730720:CDS
TAGTGTCAGCTGCAACTCTA+CGG 0.487655 5_1:-40543200 None:intergenic
GCAGTTCCGCTTTGATTGGA+GGG 0.488874 5_1:+40543418 Msa0730720:CDS
CCAGAATGGTTGAGAAGTGC+TGG 0.489970 5_1:+40542032 Msa0730720:CDS
ATCAAAGCGGAACTGCCAAC+AGG 0.490375 5_1:-40543411 None:intergenic
AGCAGGGAATAGCTGAAATT+GGG 0.495025 5_1:+40543343 Msa0730720:CDS
TGCACTTGCAGAGGTACCTT+CGG 0.496049 5_1:+40543455 Msa0730720:CDS
GAAGCATAAGAAGAAAGAAA+GGG 0.497435 5_1:-40541748 None:intergenic
ACACTCAAGCTATGTATTGA+GGG 0.498465 5_1:+40547676 Msa0730720:CDS
GAAGCTGGCTTCCGCTCTCT+GGG 0.502819 5_1:-40546929 None:intergenic
CTGGGGTTCCTCACCGGTGT+AGG 0.504195 5_1:-40546893 None:intergenic
GAGACCATTGGGATCGTGAT+GGG 0.506100 5_1:+40543079 Msa0730720:CDS
AACCTTCGTTAGTTCCAGAA+TGG 0.508492 5_1:+40542018 Msa0730720:CDS
AGACGAAGATGCAAAATGTT+GGG 0.508500 5_1:-40542081 None:intergenic
CTTTGATTGGAGGGGAGGGG+TGG 0.509850 5_1:+40543427 Msa0730720:CDS
TTCTTTCAGAACAAAAGGAA+TGG 0.509905 5_1:-40547860 None:intergenic
TCAGAAGTTAATGGGCTGGC+AGG 0.512712 5_1:+40548020 Msa0730720:three_prime_UTR
AGCGGTTTATTTCTTTCAAG+AGG 0.513234 5_1:+40548106 Msa0730720:three_prime_UTR
TGCTTGGAGAACAATGAAAT+GGG 0.513437 5_1:-40548270 None:intergenic
TTCCGCTTTGATTGGAGGGG+AGG 0.513462 5_1:+40543422 Msa0730720:CDS
GTTAATGGGCTGGCAGGTAG+GGG 0.515840 5_1:+40548026 Msa0730720:three_prime_UTR
GATTCTCTTACCAAAGCCTT+AGG 0.517056 5_1:-40543817 None:intergenic
GGAGACCATTGGGATCGTGA+TGG 0.517687 5_1:+40543078 Msa0730720:CDS
AGTCCGCAATCTGTTGGCAA+TGG 0.517821 5_1:+40547154 Msa0730720:CDS
CTACTGTTATTGGCTGCAGA+TGG 0.519700 5_1:-40542874 None:intergenic
GGGTTGCTGTAGCGCACTCT+TGG 0.521825 5_1:-40546669 None:intergenic
ATGTAGGAGATGAAACCATC+TGG 0.523186 5_1:-40547084 None:intergenic
AAGCACTTATTCGTTAACTA+GGG 0.524145 5_1:-40541779 None:intergenic
AATTTCAAATCCAAAGAAGC+TGG 0.524590 5_1:-40546944 None:intergenic
CCATTTCTCAAGTGAAGAGC+CGG 0.524802 5_1:+40546993 Msa0730720:CDS
TAGCAGTGGCACCCAAACTA+GGG 0.525661 5_1:-40543377 None:intergenic
TAGACGAAGATGCAAAATGT+TGG 0.526664 5_1:-40542082 None:intergenic
ATCTATCTTTCTCTCTATCA+CGG 0.527499 5_1:-40543047 None:intergenic
TGCACAAGAATCAAACAACT+TGG 0.530995 5_1:-40547716 None:intergenic
TGATCTTAAATCAGTGGTGT+GGG 0.531419 5_1:+40546772 Msa0730720:CDS
GCACTTTCTGTGGGTAGTGT+TGG 0.532281 5_1:+40543261 Msa0730720:CDS
GCGGTTTATTTCTTTCAAGA+GGG 0.533647 5_1:+40548107 Msa0730720:three_prime_UTR
GCTGGAAGTGTTGTTGGTGC+TGG 0.537246 5_1:+40542050 Msa0730720:CDS
TCGAGCTCGTTCAACTCCCC+AGG 0.540783 5_1:+40543602 Msa0730720:CDS
CATTGATCTCCTCTTCAGTA+AGG 0.541132 5_1:-40547336 None:intergenic
CAATCCTGCCTGCTTAACAT+TGG 0.543793 5_1:+40547968 Msa0730720:three_prime_UTR
TTCAGCAGCTGCTCCTACAC+CGG 0.549043 5_1:+40546880 Msa0730720:CDS
TGCGATTTCGCGGTGAAGAG+AGG 0.550822 5_1:+40541927 Msa0730720:five_prime_UTR
GAAAATGCAGACGAGGATGA+AGG 0.552541 5_1:+40547313 Msa0730720:CDS
CTGATCTTAAATCAGTGGTG+TGG 0.553985 5_1:+40546771 Msa0730720:CDS
CAGTTCCGCTTTGATTGGAG+GGG 0.557982 5_1:+40543419 Msa0730720:CDS
GTGCGCCATTTCCATTGTTG+TGG 0.558083 5_1:-40543242 None:intergenic
TCGTGATGGGTCTGACCCGT+TGG 0.558923 5_1:+40543092 Msa0730720:CDS
GCCCCATTGCCAACAGATTG+CGG 0.559098 5_1:-40547157 None:intergenic
TCTGCAAGTCCGCAATCTGT+TGG 0.559736 5_1:+40547148 Msa0730720:CDS
GTAATTGGAAGCAGTAGCGC+TGG 0.559993 5_1:+40543477 Msa0730720:CDS
GGGAATAGCTGAAATTGGGC+GGG 0.560392 5_1:+40543347 Msa0730720:CDS
ACCAAAGCCTTAGGCATGGA+TGG 0.561082 5_1:-40543808 None:intergenic
TGGTGCTTCCCCTACTTCCA+AGG 0.561091 5_1:+40546799 Msa0730720:CDS
GTATCATCTAGTACTGCAGC+TGG 0.564357 5_1:+40543543 Msa0730720:CDS
TTGATGTTCCAAAGACATCT+GGG 0.565081 5_1:+40546741 Msa0730720:CDS
AGCTGGTCTTAATATGGCCG+AGG 0.565911 5_1:+40543560 Msa0730720:CDS
CGGTTTATTTCTTTCAAGAG+GGG 0.569336 5_1:+40548108 Msa0730720:three_prime_UTR
ACTAGCAATGGCAATGCTCA+TGG 0.569357 5_1:+40547187 Msa0730720:CDS
GGATGAAGGCCTTACTGAAG+AGG 0.570599 5_1:+40547327 Msa0730720:CDS
TAGGTCAGAAGTTAATGGGC+TGG 0.571394 5_1:+40548016 Msa0730720:three_prime_UTR
GGGGCTAAACCGACTAGCAA+TGG 0.572647 5_1:+40547175 Msa0730720:CDS
ATACATAGCTTGAGTGTGGA+GGG 0.574376 5_1:-40547670 None:intergenic
ACGTGCGTTTCTTCTAGGGT+TGG 0.577077 5_1:+40541811 Msa0730720:five_prime_UTR
TTCTCTTCAGCCCCTAGTGA+TGG 0.578714 5_1:-40543321 None:intergenic
AGTAACACCATCCATGCCTA+AGG 0.581123 5_1:+40543801 Msa0730720:CDS
TGCATCTTCGTCTAGTCACG+CGG 0.587282 5_1:+40542091 Msa0730720:CDS
TGAAACATCCTTGGAAGTAG+GGG 0.588555 5_1:-40546807 None:intergenic
GGAGTTGAACGAGCTCGAGA+TGG 0.591418 5_1:-40543597 None:intergenic
ATCGTCAGCAAGTTCTAGGA+GGG 0.591582 5_1:+40542960 Msa0730720:CDS
TGGGAGAGTTTAGGTTACTG+GGG 0.591834 5_1:-40546910 None:intergenic
TCTTGTGCATCTAACTTGCG+TGG 0.593513 5_1:+40547730 Msa0730720:CDS
TCTTACCAAAGCCTTAGGCA+TGG 0.593673 5_1:-40543812 None:intergenic
TATGGCCGAGGCATTAGCAC+AGG 0.598751 5_1:+40543572 Msa0730720:CDS
TCAGAAAGCTGTCTTTGACA+AGG 0.600840 5_1:+40543293 Msa0730720:CDS
AATACATAGCTTGAGTGTGG+AGG 0.601385 5_1:-40547671 None:intergenic
TCTTCGTTCTCTTGGCTGGG+AGG 0.601429 5_1:+40547291 Msa0730720:CDS
TCAATGGTTTCCAGGAAACA+GGG 0.601721 5_1:+40543165 Msa0730720:CDS
CATCTCAGCATTTCTGACAG+CGG 0.601914 5_1:-40546636 None:intergenic
TGTTAAAACACAAAGGCTTG+AGG 0.606226 5_1:+40543744 Msa0730720:CDS
GTTTACTGATCTTAAATCAG+TGG 0.606613 5_1:+40546766 Msa0730720:CDS
TGAGCATTGCCATTGCTAGT+CGG 0.607729 5_1:-40547184 None:intergenic
CTCAATACATAGCTTGAGTG+TGG 0.608755 5_1:-40547674 None:intergenic
ACAGATTGCGGACTTGCAGA+AGG 0.612528 5_1:-40547145 None:intergenic
CTGGGAGGAAAATGCAGACG+AGG 0.617492 5_1:+40547306 Msa0730720:CDS
AGGTAAACTTTGACTAGCAG+TGG 0.617989 5_1:-40543391 None:intergenic
GGAAATGGCGCACTTTCTGT+GGG 0.620875 5_1:+40543252 Msa0730720:CDS
CATCGTCAGCAAGTTCTAGG+AGG 0.621742 5_1:+40542959 Msa0730720:CDS
TGGAGCCTGTGCTAATGCCT+CGG 0.622209 5_1:-40543577 None:intergenic
AAAGAAAGGCGATGATTTAG+GGG 0.625673 5_1:+40547877 Msa0730720:three_prime_UTR
CATCTGCAGCCAATAACAGT+AGG 0.625749 5_1:+40542875 Msa0730720:CDS
GCTAGTCAAAGTTTACCTGT+TGG 0.626367 5_1:+40543396 Msa0730720:CDS
ACCTAAACTCTCCCAGAGAG+CGG 0.628430 5_1:+40546918 Msa0730720:CDS
AGGGAATAGCTGAAATTGGG+CGG 0.634832 5_1:+40543346 Msa0730720:CDS
AAAATCTGGTGAAGTAAACA+GGG 0.638511 5_1:+40547111 Msa0730720:CDS
ACTAGCAATATGCAATGCAG+AGG 0.645085 5_1:-40546690 None:intergenic
CTACTGCTTCCAATTACCGA+AGG 0.645882 5_1:-40543471 None:intergenic
CAGACCCATCACGATCCCAA+TGG 0.647433 5_1:-40543083 None:intergenic
TCAAACAACTTGGATAGCTG+TGG 0.647684 5_1:-40547706 None:intergenic
GAGAGAAGGCGAGAGAGACA+AGG 0.649433 5_1:-40541524 None:intergenic
CAACAGAAATCATCGTGACA+AGG 0.652434 5_1:+40543023 Msa0730720:CDS
AGCTACGGTTTATCCAGATG+AGG 0.660155 5_1:+40547255 Msa0730720:CDS
CTAGCAATATGCAATGCAGA+GGG 0.660169 5_1:-40546689 None:intergenic
TCCGCAATCTGTTGGCAATG+GGG 0.662158 5_1:+40547156 Msa0730720:CDS
GGTAGCAGCAACCACAACAA+TGG 0.663342 5_1:+40543231 Msa0730720:CDS
AGGTGTCTGTTAAAACACAA+AGG 0.663884 5_1:+40543737 Msa0730720:intron
GCATCTTCGTCTAGTCACGC+GGG 0.664037 5_1:+40542092 Msa0730720:CDS
AATGTGAGAAAATTGAGAGA+AGG 0.670306 5_1:-40541538 None:intergenic
GTGGACATCTGCACTTGCAG+AGG 0.670868 5_1:+40543446 Msa0730720:CDS
CCCCTCCCCTCCAATCAAAG+CGG 0.671550 5_1:-40543424 None:intergenic
AACCATTCTGGAACTAACGA+AGG 0.671654 5_1:-40542020 None:intergenic
AGCAGTGGCACCCAAACTAG+GGG 0.672555 5_1:-40543376 None:intergenic
CAGCTGCTCCTACACCGGTG+AGG 0.683116 5_1:+40546885 Msa0730720:CDS
CTAGGGGCTGAAGAGAAGCA+GGG 0.687144 5_1:+40543327 Msa0730720:CDS
GTGTCAGCTGCAACTCTACG+GGG 0.691639 5_1:-40543198 None:intergenic
GGATAGAGAGAGATACATTG+CGG 0.693174 5_1:+40543133 Msa0730720:CDS
TCGTCAGCAAGTTCTAGGAG+GGG 0.700325 5_1:+40542961 Msa0730720:CDS
GCAGCTGACACTAAATCAGG+CGG 0.705258 5_1:+40543210 Msa0730720:CDS
AGAAACGAAACGATACGACA+CGG 0.722886 5_1:-40541708 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAACACAAAAAAAAA+AGG - chr5_1:40544113-40544132 None:intergenic 10.0%
!!! AGAAATATATTTTCAAATTT+GGG - chr5_1:40545677-40545696 None:intergenic 10.0%
!!! AAGAAATATATTTTCAAATT+TGG - chr5_1:40545678-40545697 None:intergenic 10.0%
!! AAAAAAATGTTATCAAATAG+TGG - chr5_1:40542468-40542487 None:intergenic 15.0%
!! TAATAAAATTAACAGTAACA+CGG - chr5_1:40543981-40544000 None:intergenic 15.0%
!!! ATTTTTTTTTTTTTTTGCGT+TGG + chr5_1:40544144-40544163 Msa0730720:intron 15.0%
!! GTTTGTAAATTGTAATATTA+TGG - chr5_1:40544502-40544521 None:intergenic 15.0%
!! AAACTTATAACAAACATATA+GGG - chr5_1:40544619-40544638 None:intergenic 15.0%
!! AAAACTTATAACAAACATAT+AGG - chr5_1:40544620-40544639 None:intergenic 15.0%
!! TAAAACAGGTTTATTAAAAT+AGG - chr5_1:40544697-40544716 None:intergenic 15.0%
!! ACAATATTCAAATAAAGATA+TGG - chr5_1:40545081-40545100 None:intergenic 15.0%
!! TCAAAAATACTAAAAACAAA+AGG - chr5_1:40546024-40546043 None:intergenic 15.0%
!! TATTTGTTTGTATTTATAAG+AGG + chr5_1:40546302-40546321 Msa0730720:intron 15.0%
!!! TTTCTTTTCTTTTAAATACT+TGG + chr5_1:40546550-40546569 Msa0730720:intron 15.0%
!! AAATTATGCTAATAGTAAAT+CGG + chr5_1:40546838-40546857 Msa0730720:CDS 15.0%
!!! ACTTTTAATTTTCCTTTTTT+TGG - chr5_1:40548177-40548196 None:intergenic 15.0%
!!! TAAAAGTTACTTTGAATTTT+AGG + chr5_1:40548190-40548209 Msa0730720:three_prime_UTR 15.0%
!!! AAAAGTTACTTTGAATTTTA+GGG + chr5_1:40548191-40548210 Msa0730720:three_prime_UTR 15.0%
!! GATTATTTAGTGATATGAAT+GGG + chr5_1:40541866-40541885 Msa0730720:five_prime_UTR 20.0%
!!! ATTGAATTTGATAGTGAAAT+TGG + chr5_1:40541904-40541923 Msa0730720:five_prime_UTR 20.0%
!! TGATATATGATAGAACATTA+TGG + chr5_1:40542346-40542365 Msa0730720:intron 20.0%
!! TACAAAATGTTATCAAATAG+TGG - chr5_1:40542611-40542630 None:intergenic 20.0%
!!! TTGTGTAATTTTCATGAAAA+AGG + chr5_1:40542801-40542820 Msa0730720:intron 20.0%
!!! TGCTGTAAAACATTTTTTAT+AGG + chr5_1:40543841-40543860 Msa0730720:intron 20.0%
!! AACACAAAAAAAAAAGGAAA+GGG - chr5_1:40544107-40544126 None:intergenic 20.0%
!! AAACACAAAAAAAAAAGGAA+AGG - chr5_1:40544108-40544127 None:intergenic 20.0%
!!! TTACTATTTTGATACATTAC+AGG + chr5_1:40544545-40544564 Msa0730720:intron 20.0%
!!! TTAGTATTTTAACCCATTTT+GGG - chr5_1:40544980-40544999 None:intergenic 20.0%
!!! TTTAGTATTTTAACCCATTT+TGG - chr5_1:40544981-40545000 None:intergenic 20.0%
!!! TTTTTAGGAACATTTATTTG+AGG + chr5_1:40545318-40545337 Msa0730720:intron 20.0%
!! TACTAATAATGAACTCAAAT+TGG - chr5_1:40545415-40545434 None:intergenic 20.0%
!!! CATTAAATGTTTTCTTATCA+TGG + chr5_1:40545583-40545602 Msa0730720:intron 20.0%
!!! ATATGATTTTTCAATTGCAT+TGG + chr5_1:40545851-40545870 Msa0730720:intron 20.0%
!!! AAAGCTATTTATTTTTCATG+TGG + chr5_1:40545875-40545894 Msa0730720:intron 20.0%
!! ATAAAATTGTTAGAACATAC+AGG + chr5_1:40545929-40545948 Msa0730720:intron 20.0%
!! AAAATACTAAAAACAAAAGG+AGG - chr5_1:40546021-40546040 None:intergenic 20.0%
!!! TGCTATCAAAAGAAATTTTA+AGG + chr5_1:40546268-40546287 Msa0730720:intron 20.0%
!!! GCTATCAAAAGAAATTTTAA+GGG + chr5_1:40546269-40546288 Msa0730720:intron 20.0%
!!! TTACTATTAGCATAATTTGT+CGG - chr5_1:40546836-40546855 None:intergenic 20.0%
!!! TTTTCTATTTGCCTTTTTTT+AGG + chr5_1:40547997-40548016 Msa0730720:three_prime_UTR 20.0%
!!! CATGATAAAGTTTATGTTTT+TGG + chr5_1:40548141-40548160 Msa0730720:three_prime_UTR 20.0%
!!! TTCCTTTTTTTGGTTAAAAT+TGG - chr5_1:40548167-40548186 None:intergenic 20.0%
!!! GAAAGAATTTCTGTTAGTTT+TGG - chr5_1:40541502-40541521 None:intergenic 25.0%
! GTGTGTGAATAGAAATTATA+GGG - chr5_1:40541637-40541656 None:intergenic 25.0%
! TGTGTGTGAATAGAAATTAT+AGG - chr5_1:40541638-40541657 None:intergenic 25.0%
! CGATTATTTAGTGATATGAA+TGG + chr5_1:40541865-40541884 Msa0730720:five_prime_UTR 25.0%
! TATATGATAGAACATTATGG+TGG + chr5_1:40542349-40542368 Msa0730720:intron 25.0%
!! TTTGTACTAAATAGAGTATC+AGG + chr5_1:40542486-40542505 Msa0730720:intron 25.0%
!! TTGTACTAAATAGAGTATCA+GGG + chr5_1:40542487-40542506 Msa0730720:intron 25.0%
! ATTATTAAATAACGACTCAG+TGG - chr5_1:40542539-40542558 None:intergenic 25.0%
! AAAAGGAACAAGATTCTATA+AGG - chr5_1:40542740-40542759 None:intergenic 25.0%
!! TGTAATTTTCATGAAAAAGG+AGG + chr5_1:40542804-40542823 Msa0730720:intron 25.0%
! ATGAATGTGAATAAAAACAC+TGG - chr5_1:40543652-40543671 None:intergenic 25.0%
! CAGGCATAATTAATTGATAA+TGG - chr5_1:40543707-40543726 None:intergenic 25.0%
! ATAAAGTTTGCAAATTGCAA+TGG - chr5_1:40543871-40543890 None:intergenic 25.0%
! AGATGTTAGGTTTATACTAT+AGG + chr5_1:40544081-40544100 Msa0730720:intron 25.0%
!!! GATTTTAAAACTTCTGTGAA+TGG + chr5_1:40544233-40544252 Msa0730720:intron 25.0%
!!! TTGCAATTTTGATACATTCA+GGG - chr5_1:40544397-40544416 None:intergenic 25.0%
!!! TCTTCAAATTTGTTTTTCGT+TGG + chr5_1:40544466-40544485 Msa0730720:intron 25.0%
!! AAGATTTTCCCCAATTTTTT+CGG - chr5_1:40544918-40544937 None:intergenic 25.0%
!! CCAAGTAGTTGTATATTTTA+GGG - chr5_1:40545004-40545023 None:intergenic 25.0%
!! ACCAAGTAGTTGTATATTTT+AGG - chr5_1:40545005-40545024 None:intergenic 25.0%
!! CCATTATCATCATTAATTTG+TGG - chr5_1:40545203-40545222 None:intergenic 25.0%
! CCACAAATTAATGATGATAA+TGG + chr5_1:40545200-40545219 Msa0730720:intron 25.0%
! TATATAACCAAACCTTGAAA+AGG - chr5_1:40545524-40545543 None:intergenic 25.0%
!!! TTTTCAAGGTTTGGTTATAT+AGG + chr5_1:40545523-40545542 Msa0730720:intron 25.0%
! ACTAATCATAATACGATTCA+TGG - chr5_1:40545561-40545580 None:intergenic 25.0%
!! GTAAGATGCTTGTTAATATT+GGG - chr5_1:40545637-40545656 None:intergenic 25.0%
!! AGTAAGATGCTTGTTAATAT+TGG - chr5_1:40545638-40545657 None:intergenic 25.0%
!!! CTATTTATTTTTCATGTGGT+GGG + chr5_1:40545879-40545898 Msa0730720:intron 25.0%
!!! TATTTATTTTTCATGTGGTG+GGG + chr5_1:40545880-40545899 Msa0730720:intron 25.0%
!! GATACACACTATTTAAAATC+TGG + chr5_1:40546042-40546061 Msa0730720:intron 25.0%
! AGTGAAATTGAATTCTATCT+TGG + chr5_1:40546477-40546496 Msa0730720:intron 25.0%
!! TTAGCATAAAGTCTATTTCT+TGG + chr5_1:40546504-40546523 Msa0730720:intron 25.0%
! GCATAAAATGTAATTTAGCA+GGG - chr5_1:40547509-40547528 None:intergenic 25.0%
! TGCATAAAATGTAATTTAGC+AGG - chr5_1:40547510-40547529 None:intergenic 25.0%
! AGACATCAAAAATTGAAACT+TGG - chr5_1:40547829-40547848 None:intergenic 25.0%
! TTGCAATATTTGCAAATGTA+TGG - chr5_1:40547932-40547951 None:intergenic 25.0%
! CAAATATTGCAATAAGTTAC+AGG + chr5_1:40547940-40547959 Msa0730720:three_prime_UTR 25.0%
! TTAACTTCTGACCTAAAAAA+AGG - chr5_1:40548011-40548030 None:intergenic 25.0%
!!! TTTTTTAGGTCAGAAGTTAA+TGG + chr5_1:40548011-40548030 Msa0730720:three_prime_UTR 25.0%
!!! TTTTTAGGTCAGAAGTTAAT+GGG + chr5_1:40548012-40548031 Msa0730720:three_prime_UTR 25.0%
AATGTGAGAAAATTGAGAGA+AGG - chr5_1:40541541-40541560 None:intergenic 30.0%
TATCGTTTCGTTTCTCTTTA+GGG + chr5_1:40541716-40541735 Msa0730720:five_prime_UTR 30.0%
GAAGCATAAGAAGAAAGAAA+GGG - chr5_1:40541751-40541770 None:intergenic 30.0%
! AGAAGCATAAGAAGAAAGAA+AGG - chr5_1:40541752-40541771 None:intergenic 30.0%
AAGCACTTATTCGTTAACTA+GGG - chr5_1:40541782-40541801 None:intergenic 30.0%
! AAAGCACTTATTCGTTAACT+AGG - chr5_1:40541783-40541802 None:intergenic 30.0%
ATCATGTACAGTGTTAGTTA+TGG + chr5_1:40541986-40542005 Msa0730720:exon 30.0%
!! CATGTTTTTAATGCTTTAGC+TGG + chr5_1:40542156-40542175 Msa0730720:intron 30.0%
!!! AAGTGTTTTTTTGTCGATTG+TGG + chr5_1:40542206-40542225 Msa0730720:intron 30.0%
CAACAGAATTTAAACAAACC+CGG - chr5_1:40542243-40542262 None:intergenic 30.0%
TTTGTACTAAATAGCGTATC+AGG + chr5_1:40542625-40542644 Msa0730720:intron 30.0%
TTGTACTAAATAGCGTATCA+GGG + chr5_1:40542626-40542645 Msa0730720:intron 30.0%
TCAAAATTTGATATGCTACG+TGG + chr5_1:40542666-40542685 Msa0730720:intron 30.0%
ATTGTTAAATAGCGACTTAG+TGG - chr5_1:40542701-40542720 None:intergenic 30.0%
ATCTATCTTTCTCTCTATCA+CGG - chr5_1:40543050-40543069 None:intergenic 30.0%
! GAGAAAGATAGATCCAATTT+TGG + chr5_1:40543057-40543076 Msa0730720:CDS 30.0%
TAAGATTCACTAAACATGAC+AGG - chr5_1:40544011-40544030 None:intergenic 30.0%
TCCTGTTATACTTAGATGTT+AGG + chr5_1:40544068-40544087 Msa0730720:intron 30.0%
ACCTAACATCTAAGTATAAC+AGG - chr5_1:40544072-40544091 None:intergenic 30.0%
! TGAGTACATTTGATAGTTGA+AGG + chr5_1:40544259-40544278 Msa0730720:intron 30.0%
! ACATTTGATAGTTGAAGGTA+TGG + chr5_1:40544264-40544283 Msa0730720:intron 30.0%
GACAACAACTCACATATTTA+GGG - chr5_1:40544366-40544385 None:intergenic 30.0%
TGACAACAACTCACATATTT+AGG - chr5_1:40544367-40544386 None:intergenic 30.0%
!! CTTGCAATTTTGATACATTC+AGG - chr5_1:40544398-40544417 None:intergenic 30.0%
AAGACCAAAACAACTAACTA+GGG - chr5_1:40544450-40544469 None:intergenic 30.0%
TACAAACAAAAGAGACACTT+AGG + chr5_1:40544515-40544534 Msa0730720:intron 30.0%
ACAAACAAAAGAGACACTTA+GGG + chr5_1:40544516-40544535 Msa0730720:intron 30.0%
TTTAAATGGGCACACTTTAT+GGG - chr5_1:40544731-40544750 None:intergenic 30.0%
ATTTAAATGGGCACACTTTA+TGG - chr5_1:40544732-40544751 None:intergenic 30.0%
CAAGCCTCAATCATTTAAAT+GGG - chr5_1:40544744-40544763 None:intergenic 30.0%
TCAAGCCTCAATCATTTAAA+TGG - chr5_1:40544745-40544764 None:intergenic 30.0%
TAGAAAAGGCCGAAAAAATT+GGG + chr5_1:40544906-40544925 Msa0730720:intron 30.0%
AAAATCTTAAACCAAGGGTT+GGG + chr5_1:40544930-40544949 Msa0730720:intron 30.0%
!! TTTTAACCCATTTTGGGAAT+AGG - chr5_1:40544974-40544993 None:intergenic 30.0%
CCCTAAAATATACAACTACT+TGG + chr5_1:40545001-40545020 Msa0730720:intron 30.0%
GTTTCCAGTATGAATTTCAA+AGG - chr5_1:40545119-40545138 None:intergenic 30.0%
!! TGATGATAATGGTGTGTTTA+TGG + chr5_1:40545211-40545230 Msa0730720:intron 30.0%
! ACTGTAGTTTGAAGTGATAT+TGG + chr5_1:40545381-40545400 Msa0730720:intron 30.0%
AAAAAGCAAAATCATCCACT+TGG - chr5_1:40545484-40545503 None:intergenic 30.0%
ATATTTCTTAATACTCGTGC+TGG + chr5_1:40545689-40545708 Msa0730720:intron 30.0%
AGTAGTCATTACTACATAAG+TGG - chr5_1:40545749-40545768 None:intergenic 30.0%
!! GCTATTTATTTTTCATGTGG+TGG + chr5_1:40545878-40545897 Msa0730720:intron 30.0%
TTGTGAAGTTATTATGTCTG+TGG + chr5_1:40546184-40546203 Msa0730720:intron 30.0%
!!! TGTTAGTTTGTTTTCTTGTC+AGG + chr5_1:40546580-40546599 Msa0730720:intron 30.0%
GTTTACTGATCTTAAATCAG+TGG + chr5_1:40546766-40546785 Msa0730720:CDS 30.0%
AATTTCAAATCCAAAGAAGC+TGG - chr5_1:40546947-40546966 None:intergenic 30.0%
! GCTTCTTTGGATTTGAAATT+AGG + chr5_1:40546947-40546966 Msa0730720:CDS 30.0%
! TTTGAAATTAGGCACTACTT+TGG + chr5_1:40546958-40546977 Msa0730720:CDS 30.0%
AAAAATCTGGTGAAGTAAAC+AGG + chr5_1:40547110-40547129 Msa0730720:CDS 30.0%
AAAATCTGGTGAAGTAAACA+GGG + chr5_1:40547111-40547130 Msa0730720:CDS 30.0%
!! GATCAATGCTTTTTATCAAG+AGG + chr5_1:40547351-40547370 Msa0730720:CDS 30.0%
GGGAAATAAAAGTCATTCAT+AGG - chr5_1:40547489-40547508 None:intergenic 30.0%
!! CAACTTGCTGTTATTTGATT+TGG + chr5_1:40547528-40547547 Msa0730720:intron 30.0%
!! TTATTTGATTTGGCTGATAC+TGG + chr5_1:40547538-40547557 Msa0730720:intron 30.0%
TGGATGTTTCAATTCATGTT+TGG + chr5_1:40547558-40547577 Msa0730720:intron 30.0%
!! AAGCTTCAACAATGTTGTTT+TGG - chr5_1:40547584-40547603 None:intergenic 30.0%
!! TTGAAGCTTGTTATCAGATA+AGG + chr5_1:40547595-40547614 Msa0730720:intron 30.0%
TTCTTTCAGAACAAAAGGAA+TGG - chr5_1:40547863-40547882 None:intergenic 30.0%
!!! TTCCTTTTGTTCTGAAAGAA+AGG + chr5_1:40547863-40547882 Msa0730720:three_prime_UTR 30.0%
TGATTTAGGGGTTAAAAATG+TGG + chr5_1:40547889-40547908 Msa0730720:three_prime_UTR 30.0%
GATTTAGGGGTTAAAAATGT+GGG + chr5_1:40547890-40547909 Msa0730720:three_prime_UTR 30.0%
AAGAATTTCCAATGTTAAGC+AGG - chr5_1:40547979-40547998 None:intergenic 30.0%
!! GGCCAATTTTAACCAAAAAA+AGG + chr5_1:40548162-40548181 Msa0730720:three_prime_UTR 30.0%
! AAGAGAAAAAAGAGTGCGAT+GGG - chr5_1:40541577-40541596 None:intergenic 35.0%
GTATCGTTTCGTTTCTCTTT+AGG + chr5_1:40541715-40541734 Msa0730720:five_prime_UTR 35.0%
AGACGAAGATGCAAAATGTT+GGG - chr5_1:40542084-40542103 None:intergenic 35.0%
TAGACGAAGATGCAAAATGT+TGG - chr5_1:40542085-40542104 None:intergenic 35.0%
!!! TTTTTTGTCGATTGTGGTTC+CGG + chr5_1:40542212-40542231 Msa0730720:intron 35.0%
! CGGGTTTGTTTAAATTCTGT+TGG + chr5_1:40542241-40542260 Msa0730720:intron 35.0%
GTTCAAATTTCGCTATGCTA+TGG + chr5_1:40542308-40542327 Msa0730720:intron 35.0%
AATACATGGTTCTTGGAGAT+TGG + chr5_1:40542408-40542427 Msa0730720:intron 35.0%
ATACATGGTTCTTGGAGATT+GGG + chr5_1:40542409-40542428 Msa0730720:intron 35.0%
ATTAAATAACGACTCAGTGG+TGG - chr5_1:40542536-40542555 None:intergenic 35.0%
TTAAATAGCGACTTAGTGGT+GGG - chr5_1:40542697-40542716 None:intergenic 35.0%
ACACATACAAATGCTCGAAA+AGG - chr5_1:40542757-40542776 None:intergenic 35.0%
AGATCTGTTCCTACTGTTAT+TGG - chr5_1:40542887-40542906 None:intergenic 35.0%
AACAGATCTTCGAAGAATAC+TGG + chr5_1:40542898-40542917 Msa0730720:CDS 35.0%
!! ATCCAATTTTGGAGACCATT+GGG + chr5_1:40543068-40543087 Msa0730720:CDS 35.0%
TATCCTTCCAGAAAAAAGGT+TGG - chr5_1:40543118-40543137 None:intergenic 35.0%
TCTCTATCCTTCCAGAAAAA+AGG - chr5_1:40543122-40543141 None:intergenic 35.0%
! ACAAGGATTTTCCATCACTA+GGG + chr5_1:40543310-40543329 Msa0730720:CDS 35.0%
AATAAAAACACTGGTGACAC+AGG - chr5_1:40543643-40543662 None:intergenic 35.0%
ATTATGCCTGAATCAACTGT+AGG + chr5_1:40543717-40543736 Msa0730720:intron 35.0%
AGGTGTCTGTTAAAACACAA+AGG + chr5_1:40543737-40543756 Msa0730720:intron 35.0%
TGTTAAAACACAAAGGCTTG+AGG + chr5_1:40543744-40543763 Msa0730720:CDS 35.0%
GGAGAGACAATTAAGAGATA+AGG - chr5_1:40543940-40543959 None:intergenic 35.0%
CGGACATAAGATTCACTAAA+AGG - chr5_1:40543961-40543980 None:intergenic 35.0%
ACATCTAAGTATAACAGGAC+AGG - chr5_1:40544067-40544086 None:intergenic 35.0%
AGTGTTAACTACACTTCAGT+CGG - chr5_1:40544211-40544230 None:intergenic 35.0%
GGGGTTGCAAGATATATATT+GGG + chr5_1:40544322-40544341 Msa0730720:intron 35.0%
GGGTTGCAAGATATATATTG+GGG + chr5_1:40544323-40544342 Msa0730720:intron 35.0%
! ATTGGGGTTAACACTCATTT+TGG + chr5_1:40544339-40544358 Msa0730720:intron 35.0%
GAAGACCAAAACAACTAACT+AGG - chr5_1:40544451-40544470 None:intergenic 35.0%
TGTGCCCATTTAAATGATTG+AGG + chr5_1:40544737-40544756 Msa0730720:intron 35.0%
GTAGAAAAGGCCGAAAAAAT+TGG + chr5_1:40544905-40544924 Msa0730720:intron 35.0%
AGAAAAGGCCGAAAAAATTG+GGG + chr5_1:40544907-40544926 Msa0730720:intron 35.0%
TTGGGGAAAATCTTAAACCA+AGG + chr5_1:40544924-40544943 Msa0730720:intron 35.0%
TGGGGAAAATCTTAAACCAA+GGG + chr5_1:40544925-40544944 Msa0730720:intron 35.0%
GAAAATCTTAAACCAAGGGT+TGG + chr5_1:40544929-40544948 Msa0730720:intron 35.0%
!! CTTGCCTTTGAAATTCATAC+TGG + chr5_1:40545112-40545131 Msa0730720:intron 35.0%
TCAAATCAGCAAGTTAAGCA+TGG - chr5_1:40545141-40545160 None:intergenic 35.0%
ATACATGTACCCATTACAGA+GGG - chr5_1:40545285-40545304 None:intergenic 35.0%
!! TCTGTAATGGGTACATGTAT+CGG + chr5_1:40545285-40545304 Msa0730720:intron 35.0%
TATCACTTCAAACTACAGTG+TGG - chr5_1:40545380-40545399 None:intergenic 35.0%
!! ATGAACTCAAATTGGTAACG+CGG - chr5_1:40545407-40545426 None:intergenic 35.0%
! ACTTCCATTTGTCCTTTTCA+AGG + chr5_1:40545509-40545528 Msa0730720:intron 35.0%
CAAACCTTGAAAAGGACAAA+TGG - chr5_1:40545516-40545535 None:intergenic 35.0%
!! CATTTGTCCTTTTCAAGGTT+TGG + chr5_1:40545514-40545533 Msa0730720:intron 35.0%
TAATATTGGGTCAGCAAACA+AGG - chr5_1:40545624-40545643 None:intergenic 35.0%
ACATAAGTGGAGAAATTCTC+AGG - chr5_1:40545736-40545755 None:intergenic 35.0%
ACATACAGGATCACATTTCT+AGG + chr5_1:40545943-40545962 Msa0730720:intron 35.0%
TGAACATATGATAAACGCAG+CGG - chr5_1:40546076-40546095 None:intergenic 35.0%
! TTGCTCTTCCAAGCTTATTT+TGG + chr5_1:40546115-40546134 Msa0730720:intron 35.0%
GTAGGATACCAAAATAAGCT+TGG - chr5_1:40546126-40546145 None:intergenic 35.0%
TGAAGTTATTATGTCTGTGG+AGG + chr5_1:40546187-40546206 Msa0730720:intron 35.0%
CCTGCAAACATATCATAACA+CGG - chr5_1:40546235-40546254 None:intergenic 35.0%
TGATTCATGTAATCAATCCC+AGG + chr5_1:40546339-40546358 Msa0730720:intron 35.0%
! AGTTGTTTCCATGTCTATGT+TGG + chr5_1:40546394-40546413 Msa0730720:intron 35.0%
! ACAGTTTTCCAACATAGACA+TGG - chr5_1:40546405-40546424 None:intergenic 35.0%
TCTATGTTGGAAAACTGTAG+AGG + chr5_1:40546407-40546426 Msa0730720:intron 35.0%
TGGAAAACTGTAGAGGAATT+AGG + chr5_1:40546414-40546433 Msa0730720:intron 35.0%
AGGAATTAGGATTTGTGCAA+AGG + chr5_1:40546427-40546446 Msa0730720:intron 35.0%
!! TGTCTTTGGAACATCAACTT+TGG - chr5_1:40546738-40546757 None:intergenic 35.0%
TTGATGTTCCAAAGACATCT+GGG + chr5_1:40546741-40546760 Msa0730720:CDS 35.0%
TGATCTTAAATCAGTGGTGT+GGG + chr5_1:40546772-40546791 Msa0730720:CDS 35.0%
TTGAAACATCCTTGGAAGTA+GGG - chr5_1:40546811-40546830 None:intergenic 35.0%
! TTTGAAACATCCTTGGAAGT+AGG - chr5_1:40546812-40546831 None:intergenic 35.0%
GCAGATTGAAGAAATCATTC+CGG - chr5_1:40547015-40547034 None:intergenic 35.0%
TCTCCTACATTGGAAAAATC+TGG + chr5_1:40547097-40547116 Msa0730720:CDS 35.0%
! TCACCAGATTTTTCCAATGT+AGG - chr5_1:40547103-40547122 None:intergenic 35.0%
AAATTCTGCAAAGCTCTTCA+TGG - chr5_1:40547213-40547232 None:intergenic 35.0%
TGAGAAAAATTCCAGAGCTA+CGG + chr5_1:40547240-40547259 Msa0730720:CDS 35.0%
!! CAATGCTTTTTATCAAGAGG+TGG + chr5_1:40547354-40547373 Msa0730720:CDS 35.0%
!! AGCTTGTTATCAGATAAGGT+TGG + chr5_1:40547599-40547618 Msa0730720:intron 35.0%
! TGTTTTCCAGTGCAAGAAAT+TGG + chr5_1:40547645-40547664 Msa0730720:intron 35.0%
ACACTCAAGCTATGTATTGA+GGG + chr5_1:40547676-40547695 Msa0730720:CDS 35.0%
TGCACAAGAATCAAACAACT+TGG - chr5_1:40547719-40547738 None:intergenic 35.0%
TGAAAGAAAGGCGATGATTT+AGG + chr5_1:40547875-40547894 Msa0730720:three_prime_UTR 35.0%
GAAAGAAAGGCGATGATTTA+GGG + chr5_1:40547876-40547895 Msa0730720:three_prime_UTR 35.0%
AAAGAAAGGCGATGATTTAG+GGG + chr5_1:40547877-40547896 Msa0730720:three_prime_UTR 35.0%
!!! ATCTTTTGGGGTAATTTGAG+CGG + chr5_1:40548088-40548107 Msa0730720:three_prime_UTR 35.0%
! AGCGGTTTATTTCTTTCAAG+AGG + chr5_1:40548106-40548125 Msa0730720:three_prime_UTR 35.0%
! GCGGTTTATTTCTTTCAAGA+GGG + chr5_1:40548107-40548126 Msa0730720:three_prime_UTR 35.0%
! CGGTTTATTTCTTTCAAGAG+GGG + chr5_1:40548108-40548127 Msa0730720:three_prime_UTR 35.0%
! AAAAAAGAGTGCGATGGGTT+TGG - chr5_1:40541572-40541591 None:intergenic 40.0%
! GAAGAGAAAAAAGAGTGCGA+TGG - chr5_1:40541578-40541597 None:intergenic 40.0%
!! TCATTTTTCATCTTCGCGTG+TGG + chr5_1:40541663-40541682 Msa0730720:five_prime_UTR 40.0%
AGAAACGAAACGATACGACA+CGG - chr5_1:40541711-40541730 None:intergenic 40.0%
ACAAACGTGCGTTTCTTCTA+GGG + chr5_1:40541807-40541826 Msa0730720:five_prime_UTR 40.0%
AACCTTCGTTAGTTCCAGAA+TGG + chr5_1:40542018-40542037 Msa0730720:CDS 40.0%
!! AACCATTCTGGAACTAACGA+AGG - chr5_1:40542023-40542042 None:intergenic 40.0%
!! TTTTTGTCGATTGTGGTTCC+GGG + chr5_1:40542213-40542232 Msa0730720:intron 40.0%
! TTAAACAAACCCGGTTTTCC+CGG - chr5_1:40542234-40542253 None:intergenic 40.0%
ATTATCCCACTAAGTGGAGT+CGG - chr5_1:40542391-40542410 None:intergenic 40.0%
CCATGTATTATCCCACTAAG+TGG - chr5_1:40542397-40542416 None:intergenic 40.0%
CCACTTAGTGGGATAATACA+TGG + chr5_1:40542394-40542413 Msa0730720:intron 40.0%
GTGGGATAATACATGGTTCT+TGG + chr5_1:40542401-40542420 Msa0730720:intron 40.0%
TACATGGTTCTTGGAGATTG+GGG + chr5_1:40542410-40542429 Msa0730720:intron 40.0%
GTTAAATAGCGACTTAGTGG+TGG - chr5_1:40542698-40542717 None:intergenic 40.0%
TGTATGTGTACGAGAAAAGC+CGG + chr5_1:40542768-40542787 Msa0730720:intron 40.0%
ATTACACAACACGTGTACAC+CGG - chr5_1:40542790-40542809 None:intergenic 40.0%
CAACAGAAATCATCGTGACA+AGG + chr5_1:40543023-40543042 Msa0730720:CDS 40.0%
!! GATCCAATTTTGGAGACCAT+TGG + chr5_1:40543067-40543086 Msa0730720:CDS 40.0%
ATCCCAATGGTCTCCAAAAT+TGG - chr5_1:40543073-40543092 None:intergenic 40.0%
GGATAGAGAGAGATACATTG+CGG + chr5_1:40543133-40543152 Msa0730720:CDS 40.0%
GTTCTCATTCAATGGTTTCC+AGG + chr5_1:40543157-40543176 Msa0730720:CDS 40.0%
TTCAATGGTTTCCAGGAAAC+AGG + chr5_1:40543164-40543183 Msa0730720:CDS 40.0%
TCAATGGTTTCCAGGAAACA+GGG + chr5_1:40543165-40543184 Msa0730720:CDS 40.0%
AGCAACCACAACAATGGAAA+TGG + chr5_1:40543237-40543256 Msa0730720:CDS 40.0%
TCAGAAAGCTGTCTTTGACA+AGG + chr5_1:40543293-40543312 Msa0730720:CDS 40.0%
! GACAAGGATTTTCCATCACT+AGG + chr5_1:40543309-40543328 Msa0730720:CDS 40.0%
! CAAGGATTTTCCATCACTAG+GGG + chr5_1:40543311-40543330 Msa0730720:CDS 40.0%
AAGCAGGGAATAGCTGAAAT+TGG + chr5_1:40543342-40543361 Msa0730720:CDS 40.0%
AGCAGGGAATAGCTGAAATT+GGG + chr5_1:40543343-40543362 Msa0730720:CDS 40.0%
AGGTAAACTTTGACTAGCAG+TGG - chr5_1:40543394-40543413 None:intergenic 40.0%
GCTAGTCAAAGTTTACCTGT+TGG + chr5_1:40543396-40543415 Msa0730720:CDS 40.0%
CAAACTATTGCTGCAACTTC+TGG + chr5_1:40543516-40543535 Msa0730720:CDS 40.0%
!! TACTGCAGCTGGTCTTAATA+TGG + chr5_1:40543554-40543573 Msa0730720:CDS 40.0%
GATTCTCTTACCAAAGCCTT+AGG - chr5_1:40543820-40543839 None:intergenic 40.0%
!! GTTGAAGGTATGGTGTTTTG+TGG + chr5_1:40544274-40544293 Msa0730720:intron 40.0%
GGGGGTTGCAAGATATATAT+TGG + chr5_1:40544321-40544340 Msa0730720:intron 40.0%
! GTCTCCCTAGTTAGTTGTTT+TGG + chr5_1:40544443-40544462 Msa0730720:intron 40.0%
GGGACTATATGGCTTAAAAC+AGG - chr5_1:40544711-40544730 None:intergenic 40.0%
GCACACTTTATGGGACTATA+TGG - chr5_1:40544722-40544741 None:intergenic 40.0%
TTTGGGAATAGGTTCAGGTA+TGG - chr5_1:40544963-40544982 None:intergenic 40.0%
ACCTGAACCTATTCCCAAAA+TGG + chr5_1:40544964-40544983 Msa0730720:intron 40.0%
CCTGAACCTATTCCCAAAAT+GGG + chr5_1:40544965-40544984 Msa0730720:intron 40.0%
GATACATGTACCCATTACAG+AGG - chr5_1:40545286-40545305 None:intergenic 40.0%
! ATCGGAAGCTACAGGTTTTT+AGG + chr5_1:40545303-40545322 Msa0730720:intron 40.0%
TACAGTGTGGATAGAAAGAC+TGG - chr5_1:40545367-40545386 None:intergenic 40.0%
GAGAAATTCTCAGGTTCACA+TGG - chr5_1:40545727-40545746 None:intergenic 40.0%
ACTACTTATCTTTCCGACGT+TGG + chr5_1:40545763-40545782 Msa0730720:intron 40.0%
! ACTCATAAGTTGGGAAGATG+AGG + chr5_1:40545802-40545821 Msa0730720:intron 40.0%
AAGATGAGGTTGCTTGGAAT+AGG + chr5_1:40545816-40545835 Msa0730720:intron 40.0%
TGGTGGGGCTAATATTATTG+CGG + chr5_1:40545895-40545914 Msa0730720:intron 40.0%
! AGGTGCAAGCATCTGTTTTA+AGG + chr5_1:40545963-40545982 Msa0730720:intron 40.0%
AAGCTTGGAAGAGCAAAGTT+AGG - chr5_1:40546111-40546130 None:intergenic 40.0%
CCGTGTTATGATATGTTTGC+AGG + chr5_1:40546232-40546251 Msa0730720:intron 40.0%
! TGACAGTCTTTTCACTACCT+GGG - chr5_1:40546359-40546378 None:intergenic 40.0%
CTAGCAATATGCAATGCAGA+GGG - chr5_1:40546692-40546711 None:intergenic 40.0%
ACTAGCAATATGCAATGCAG+AGG - chr5_1:40546693-40546712 None:intergenic 40.0%
GTTGATGTTCCAAAGACATC+TGG + chr5_1:40546740-40546759 Msa0730720:CDS 40.0%
GTAAACTTCCCAGATGTCTT+TGG - chr5_1:40546752-40546771 None:intergenic 40.0%
CTGATCTTAAATCAGTGGTG+TGG + chr5_1:40546771-40546790 Msa0730720:CDS 40.0%
AAATCAGTGGTGTGGGAAAA+TGG + chr5_1:40546779-40546798 Msa0730720:CDS 40.0%
TGAAACATCCTTGGAAGTAG+GGG - chr5_1:40546810-40546829 None:intergenic 40.0%
! TGTCGGATTTGAAACATCCT+TGG - chr5_1:40546819-40546838 None:intergenic 40.0%
!! TCTACCGTTTTTCCAGATTC+TGG + chr5_1:40547061-40547080 Msa0730720:CDS 40.0%
ATGTAGGAGATGAAACCATC+TGG - chr5_1:40547087-40547106 None:intergenic 40.0%
GATGGTTTCATCTCCTACAT+TGG + chr5_1:40547087-40547106 Msa0730720:CDS 40.0%
ATTTCTTCGTTCTCTTGGCT+GGG + chr5_1:40547288-40547307 Msa0730720:CDS 40.0%
CATTGATCTCCTCTTCAGTA+AGG - chr5_1:40547339-40547358 None:intergenic 40.0%
ATACATAGCTTGAGTGTGGA+GGG - chr5_1:40547673-40547692 None:intergenic 40.0%
AATACATAGCTTGAGTGTGG+AGG - chr5_1:40547674-40547693 None:intergenic 40.0%
CTCAATACATAGCTTGAGTG+TGG - chr5_1:40547677-40547696 None:intergenic 40.0%
CACACTCAAGCTATGTATTG+AGG + chr5_1:40547675-40547694 Msa0730720:CDS 40.0%
TCAAACAACTTGGATAGCTG+TGG - chr5_1:40547709-40547728 None:intergenic 40.0%
CGCCTTTCTTTCAGAACAAA+AGG - chr5_1:40547868-40547887 None:intergenic 40.0%
TTAGGGGTTAAAAATGTGGG+TGG + chr5_1:40547893-40547912 Msa0730720:three_prime_UTR 40.0%
TAGGGGTTAAAAATGTGGGT+GGG + chr5_1:40547894-40547913 Msa0730720:three_prime_UTR 40.0%
!!! AAATGTGGGTGGGTTTTGAA+TGG + chr5_1:40547904-40547923 Msa0730720:three_prime_UTR 40.0%
ATTTCCAATGTTAAGCAGGC+AGG - chr5_1:40547975-40547994 None:intergenic 40.0%
! TGCTGGGAAATTGCATCTTT+TGG + chr5_1:40548074-40548093 Msa0730720:three_prime_UTR 40.0%
! GCTGGGAAATTGCATCTTTT+GGG + chr5_1:40548075-40548094 Msa0730720:three_prime_UTR 40.0%
! CTGGGAAATTGCATCTTTTG+GGG + chr5_1:40548076-40548095 Msa0730720:three_prime_UTR 40.0%
! TTTTTCATCTTCGCGTGTGG+CGG + chr5_1:40541666-40541685 Msa0730720:five_prime_UTR 45.0%
CACAAACGTGCGTTTCTTCT+AGG + chr5_1:40541806-40541825 Msa0730720:five_prime_UTR 45.0%
! TTGGTGCTTGCTCGTTCTTT+AGG + chr5_1:40541830-40541849 Msa0730720:five_prime_UTR 45.0%
TGGTGCTTGCTCGTTCTTTA+GGG + chr5_1:40541831-40541850 Msa0730720:five_prime_UTR 45.0%
GTGAAATTGGTGCGATTTCG+CGG + chr5_1:40541917-40541936 Msa0730720:five_prime_UTR 45.0%
!! AGAAGTGCTGGAAGTGTTGT+TGG + chr5_1:40542044-40542063 Msa0730720:CDS 45.0%
ACTAAGTGGAGTCGGCTAAA+TGG - chr5_1:40542383-40542402 None:intergenic 45.0%
! ATTTAGCCGACTCCACTTAG+TGG + chr5_1:40542382-40542401 Msa0730720:intron 45.0%
! TTTAGCCGACTCCACTTAGT+GGG + chr5_1:40542383-40542402 Msa0730720:intron 45.0%
! CTACTGTTATTGGCTGCAGA+TGG - chr5_1:40542877-40542896 None:intergenic 45.0%
CATCTGCAGCCAATAACAGT+AGG + chr5_1:40542875-40542894 Msa0730720:CDS 45.0%
GAACATCGTCAGCAAGTTCT+AGG + chr5_1:40542956-40542975 Msa0730720:CDS 45.0%
!! ATCGTCAGCAAGTTCTAGGA+GGG + chr5_1:40542960-40542979 Msa0730720:CDS 45.0%
TCTAGGAGGGGTTCTATCAA+TGG + chr5_1:40542973-40542992 Msa0730720:CDS 45.0%
! CAGAAAAAAGGTTGGCCAAC+GGG - chr5_1:40543110-40543129 None:intergenic 45.0%
! CCAGAAAAAAGGTTGGCCAA+CGG - chr5_1:40543111-40543130 None:intergenic 45.0%
!!! TGGCCAACCTTTTTTCTGGA+AGG + chr5_1:40543112-40543131 Msa0730720:CDS 45.0%
ATTGCGGCGTTCTCATTCAA+TGG + chr5_1:40543149-40543168 Msa0730720:CDS 45.0%
TAAAGTCTCACCCTGTTTCC+TGG - chr5_1:40543178-40543197 None:intergenic 45.0%
TAGTGTCAGCTGCAACTCTA+CGG - chr5_1:40543203-40543222 None:intergenic 45.0%
GTTGCAGCTGACACTAAATC+AGG + chr5_1:40543207-40543226 Msa0730720:CDS 45.0%
AGGGAATAGCTGAAATTGGG+CGG + chr5_1:40543346-40543365 Msa0730720:CDS 45.0%
CTACTGCTTCCAATTACCGA+AGG - chr5_1:40543474-40543493 None:intergenic 45.0%
GTATCATCTAGTACTGCAGC+TGG + chr5_1:40543543-40543562 Msa0730720:CDS 45.0%
GCAACAAGCTTAACTACCTG+GGG - chr5_1:40543621-40543640 None:intergenic 45.0%
GGCAACAAGCTTAACTACCT+GGG - chr5_1:40543622-40543641 None:intergenic 45.0%
AGGCAACAAGCTTAACTACC+TGG - chr5_1:40543623-40543642 None:intergenic 45.0%
! CAGACACCTACAGTTGATTC+AGG - chr5_1:40543726-40543745 None:intergenic 45.0%
AACACAAAGGCTTGAGGAAC+TGG + chr5_1:40543750-40543769 Msa0730720:CDS 45.0%
!! TTAGGCATGGATGGTGTTAC+TGG - chr5_1:40543802-40543821 None:intergenic 45.0%
AGTAACACCATCCATGCCTA+AGG + chr5_1:40543801-40543820 Msa0730720:CDS 45.0%
TCTTACCAAAGCCTTAGGCA+TGG - chr5_1:40543815-40543834 None:intergenic 45.0%
TTTGTGGTACACCAGTTGTG+AGG + chr5_1:40544290-40544309 Msa0730720:intron 45.0%
ACCAGTTGTGAGGATCAAGA+GGG + chr5_1:40544300-40544319 Msa0730720:intron 45.0%
TGACAGTGTGTCACACATTC+AGG + chr5_1:40544575-40544594 Msa0730720:intron 45.0%
AATGATTGAGGCTTGAGCAC+CGG + chr5_1:40544749-40544768 Msa0730720:intron 45.0%
!! ATATCGGCCATGGTGGATAT+TGG + chr5_1:40544781-40544800 Msa0730720:intron 45.0%
!! TATCGGCCATGGTGGATATT+GGG + chr5_1:40544782-40544801 Msa0730720:intron 45.0%
TTCAACTGTTCGCCACACAA+AGG + chr5_1:40544813-40544832 Msa0730720:intron 45.0%
TACCATGAAGGGATCAGACA+TGG + chr5_1:40544876-40544895 Msa0730720:intron 45.0%
GACATGGAGTGTGGTAGAAA+AGG + chr5_1:40544892-40544911 Msa0730720:intron 45.0%
!! CCCATTTTGGGAATAGGTTC+AGG - chr5_1:40544968-40544987 None:intergenic 45.0%
! CAACTACTTGGTTCTCAGTC+TGG + chr5_1:40545013-40545032 Msa0730720:intron 45.0%
GGTTCTCAGTCTGGTATAAC+TGG + chr5_1:40545022-40545041 Msa0730720:intron 45.0%
CTCAGTCTGGTATAACTGGT+TGG + chr5_1:40545026-40545045 Msa0730720:intron 45.0%
GTACATGTATCGGAAGCTAC+AGG + chr5_1:40545295-40545314 Msa0730720:intron 45.0%
! TAATACTCGTGCTGGTGTAC+TGG + chr5_1:40545697-40545716 Msa0730720:intron 45.0%
CGGCATGTAATAACCAACGT+CGG - chr5_1:40545779-40545798 None:intergenic 45.0%
! ACGTTGGTTATTACATGCCG+AGG + chr5_1:40545779-40545798 Msa0730720:intron 45.0%
ATGCCGAGGACTCATAAGTT+GGG + chr5_1:40545793-40545812 Msa0730720:intron 45.0%
CTTCCCAACTTATGAGTCCT+CGG - chr5_1:40545799-40545818 None:intergenic 45.0%
AAAAGGAGGCTGCACATATC+AGG - chr5_1:40546007-40546026 None:intergenic 45.0%
! GTGACAGTCTTTTCACTACC+TGG - chr5_1:40546360-40546379 None:intergenic 45.0%
! GCATTTCTGACAGCGGTTTT+TGG - chr5_1:40546632-40546651 None:intergenic 45.0%
CATCTCAGCATTTCTGACAG+CGG - chr5_1:40546639-40546658 None:intergenic 45.0%
! TGGGAGAGTTTAGGTTACTG+GGG - chr5_1:40546913-40546932 None:intergenic 45.0%
! CTGGGAGAGTTTAGGTTACT+GGG - chr5_1:40546914-40546933 None:intergenic 45.0%
! TCTGGGAGAGTTTAGGTTAC+TGG - chr5_1:40546915-40546934 None:intergenic 45.0%
CCATTTCTCAAGTGAAGAGC+CGG + chr5_1:40546993-40547012 Msa0730720:CDS 45.0%
CTGGCCAGAATCTGGAAAAA+CGG - chr5_1:40547068-40547087 None:intergenic 45.0%
! TTTTCCAGATTCTGGCCAGA+TGG + chr5_1:40547069-40547088 Msa0730720:CDS 45.0%
! TGAGCATTGCCATTGCTAGT+CGG - chr5_1:40547187-40547206 None:intergenic 45.0%
ACTAGCAATGGCAATGCTCA+TGG + chr5_1:40547187-40547206 Msa0730720:CDS 45.0%
ATCTGGATAAACCGTAGCTC+TGG - chr5_1:40547254-40547273 None:intergenic 45.0%
AGCTACGGTTTATCCAGATG+AGG + chr5_1:40547255-40547274 Msa0730720:CDS 45.0%
AATGCAGCTTCTTCCTCATC+TGG - chr5_1:40547271-40547290 None:intergenic 45.0%
GCTGCATTTCTTCGTTCTCT+TGG + chr5_1:40547283-40547302 Msa0730720:CDS 45.0%
CATTTCTTCGTTCTCTTGGC+TGG + chr5_1:40547287-40547306 Msa0730720:CDS 45.0%
GAAAATGCAGACGAGGATGA+AGG + chr5_1:40547313-40547332 Msa0730720:CDS 45.0%
AGGGATCCAATTTCTTGCAC+TGG - chr5_1:40547654-40547673 None:intergenic 45.0%
! TCTTGTGCATCTAACTTGCG+TGG + chr5_1:40547730-40547749 Msa0730720:CDS 45.0%
GCACATCAAGCTTCAGATCT+GGG - chr5_1:40547784-40547803 None:intergenic 45.0%
AGCACATCAAGCTTCAGATC+TGG - chr5_1:40547785-40547804 None:intergenic 45.0%
CAATCCTGCCTGCTTAACAT+TGG + chr5_1:40547968-40547987 Msa0730720:three_prime_UTR 45.0%
! TAGGTCAGAAGTTAATGGGC+TGG + chr5_1:40548016-40548035 Msa0730720:three_prime_UTR 45.0%
! TGTTTTCTCTCTGCTGTGGT+AGG + chr5_1:40548050-40548069 Msa0730720:three_prime_UTR 45.0%
! GTTTTCTCTCTGCTGTGGTA+GGG + chr5_1:40548051-40548070 Msa0730720:three_prime_UTR 45.0%
!! ATAAAAAAAAAATTAAAACT+TGG + chr5_1:40547422-40547441 Msa0730720:intron 5.0%
!! ACGTGCGTTTCTTCTAGGGT+TGG + chr5_1:40541811-40541830 Msa0730720:five_prime_UTR 50.0%
CCAGCACTTCTCAACCATTC+TGG - chr5_1:40542035-40542054 None:intergenic 50.0%
! CCAGAATGGTTGAGAAGTGC+TGG + chr5_1:40542032-40542051 Msa0730720:CDS 50.0%
TGCATCTTCGTCTAGTCACG+CGG + chr5_1:40542091-40542110 Msa0730720:CDS 50.0%
GATTGTGGTTCCGGGAAAAC+CGG + chr5_1:40542221-40542240 Msa0730720:intron 50.0%
ATTGTGGTTCCGGGAAAACC+GGG + chr5_1:40542222-40542241 Msa0730720:intron 50.0%
TAGTGGCGCAACAGATTGCA+TGG - chr5_1:40542451-40542470 None:intergenic 50.0%
TAGTGGCGCAACAGATTGCA+CGG - chr5_1:40542451-40542470 None:intergenic 50.0%
!! CATCGTCAGCAAGTTCTAGG+AGG + chr5_1:40542959-40542978 Msa0730720:CDS 50.0%
!! TCGTCAGCAAGTTCTAGGAG+GGG + chr5_1:40542961-40542980 Msa0730720:CDS 50.0%
GAGACCATTGGGATCGTGAT+GGG + chr5_1:40543079-40543098 Msa0730720:CDS 50.0%
!!! CCGTTGGCCAACCTTTTTTC+TGG + chr5_1:40543108-40543127 Msa0730720:CDS 50.0%
AGTGTCAGCTGCAACTCTAC+GGG - chr5_1:40543202-40543221 None:intergenic 50.0%
GCAGCTGACACTAAATCAGG+CGG + chr5_1:40543210-40543229 Msa0730720:CDS 50.0%
GGTAGCAGCAACCACAACAA+TGG + chr5_1:40543231-40543250 Msa0730720:CDS 50.0%
GTGCGCCATTTCCATTGTTG+TGG - chr5_1:40543245-40543264 None:intergenic 50.0%
TGGAAATGGCGCACTTTCTG+TGG + chr5_1:40543251-40543270 Msa0730720:CDS 50.0%
GGAAATGGCGCACTTTCTGT+GGG + chr5_1:40543252-40543271 Msa0730720:CDS 50.0%
GCACTTTCTGTGGGTAGTGT+TGG + chr5_1:40543261-40543280 Msa0730720:CDS 50.0%
TTCTCTTCAGCCCCTAGTGA+TGG - chr5_1:40543324-40543343 None:intergenic 50.0%
GGGAATAGCTGAAATTGGGC+GGG + chr5_1:40543347-40543366 Msa0730720:CDS 50.0%
CGGGTTTCATCCCCTAGTTT+GGG + chr5_1:40543366-40543385 Msa0730720:CDS 50.0%
TAGCAGTGGCACCCAAACTA+GGG - chr5_1:40543380-40543399 None:intergenic 50.0%
ATCAAAGCGGAACTGCCAAC+AGG - chr5_1:40543414-40543433 None:intergenic 50.0%
GTTGGCAGTTCCGCTTTGAT+TGG + chr5_1:40543414-40543433 Msa0730720:CDS 50.0%
GCAGTTCCGCTTTGATTGGA+GGG + chr5_1:40543418-40543437 Msa0730720:CDS 50.0%
CAGTTCCGCTTTGATTGGAG+GGG + chr5_1:40543419-40543438 Msa0730720:CDS 50.0%
!! TGCACTTGCAGAGGTACCTT+CGG + chr5_1:40543455-40543474 Msa0730720:CDS 50.0%
!! GCAGAGGTACCTTCGGTAAT+TGG + chr5_1:40543462-40543481 Msa0730720:CDS 50.0%
GTAATTGGAAGCAGTAGCGC+TGG + chr5_1:40543477-40543496 Msa0730720:CDS 50.0%
!! AGCTGGTCTTAATATGGCCG+AGG + chr5_1:40543560-40543579 Msa0730720:CDS 50.0%
ACCATCCATGCCTAAGGCTT+TGG + chr5_1:40543807-40543826 Msa0730720:CDS 50.0%
ACCAAAGCCTTAGGCATGGA+TGG - chr5_1:40543811-40543830 None:intergenic 50.0%
CACCAGTTGTGAGGATCAAG+AGG + chr5_1:40544299-40544318 Msa0730720:intron 50.0%
CCAGTTGTGAGGATCAAGAG+GGG + chr5_1:40544301-40544320 Msa0730720:intron 50.0%
CAGTTGTGAGGATCAAGAGG+GGG + chr5_1:40544302-40544321 Msa0730720:intron 50.0%
AGTTGTGAGGATCAAGAGGG+GGG + chr5_1:40544303-40544322 Msa0730720:intron 50.0%
!! GCACCGGTGTTGTCGAATAT+CGG + chr5_1:40544765-40544784 Msa0730720:intron 50.0%
TGGCCGATATTCGACAACAC+CGG - chr5_1:40544771-40544790 None:intergenic 50.0%
GTGTTGTCGAATATCGGCCA+TGG + chr5_1:40544771-40544790 Msa0730720:intron 50.0%
TTGTCGAATATCGGCCATGG+TGG + chr5_1:40544774-40544793 Msa0730720:intron 50.0%
!! ATCGGCCATGGTGGATATTG+GGG + chr5_1:40544783-40544802 Msa0730720:intron 50.0%
AACTGTTCGCCACACAAAGG+TGG + chr5_1:40544816-40544835 Msa0730720:intron 50.0%
GTGGTGTGGCAGTTTACGTA+TGG + chr5_1:40544838-40544857 Msa0730720:intron 50.0%
GTGTGGCAGTTTACGTATGG+CGG + chr5_1:40544841-40544860 Msa0730720:intron 50.0%
TGTGGCAGTTTACGTATGGC+GGG + chr5_1:40544842-40544861 Msa0730720:intron 50.0%
CTCCATGTCTGATCCCTTCA+TGG - chr5_1:40544881-40544900 None:intergenic 50.0%
AAGGGATCAGACATGGAGTG+TGG + chr5_1:40544883-40544902 Msa0730720:intron 50.0%
CTCCTACCTCCCTCTGTAAT+GGG + chr5_1:40545273-40545292 Msa0730720:intron 50.0%
TACCCATTACAGAGGGAGGT+AGG - chr5_1:40545278-40545297 None:intergenic 50.0%
CATGTACCCATTACAGAGGG+AGG - chr5_1:40545282-40545301 None:intergenic 50.0%
CATGCCGAGGACTCATAAGT+TGG + chr5_1:40545792-40545811 Msa0730720:intron 50.0%
GTTGGGAAGATGAGGTTGCT+TGG + chr5_1:40545810-40545829 Msa0730720:intron 50.0%
TTGGTATCCTACACCACCAG+TGG + chr5_1:40546134-40546153 Msa0730720:intron 50.0%
TGGTATCCTACACCACCAGT+GGG + chr5_1:40546135-40546154 Msa0730720:intron 50.0%
ATCCACAACCACAAACCCAC+TGG - chr5_1:40546153-40546172 None:intergenic 50.0%
ACCTAAACTCTCCCAGAGAG+CGG + chr5_1:40546918-40546937 Msa0730720:CDS 50.0%
CCGGCTCTTCACTTGAGAAA+TGG - chr5_1:40546996-40547015 None:intergenic 50.0%
GAAACCATCTGGCCAGAATC+TGG - chr5_1:40547076-40547095 None:intergenic 50.0%
ACAGATTGCGGACTTGCAGA+AGG - chr5_1:40547148-40547167 None:intergenic 50.0%
TCTGCAAGTCCGCAATCTGT+TGG + chr5_1:40547148-40547167 Msa0730720:CDS 50.0%
AGTCCGCAATCTGTTGGCAA+TGG + chr5_1:40547154-40547173 Msa0730720:CDS 50.0%
GTCCGCAATCTGTTGGCAAT+GGG + chr5_1:40547155-40547174 Msa0730720:CDS 50.0%
TCCGCAATCTGTTGGCAATG+GGG + chr5_1:40547156-40547175 Msa0730720:CDS 50.0%
GGATGAAGGCCTTACTGAAG+AGG + chr5_1:40547327-40547346 Msa0730720:CDS 50.0%
!! TCAGAAGTTAATGGGCTGGC+AGG + chr5_1:40548020-40548039 Msa0730720:three_prime_UTR 50.0%
!! AAGTTAATGGGCTGGCAGGT+AGG + chr5_1:40548024-40548043 Msa0730720:three_prime_UTR 50.0%
!! AGTTAATGGGCTGGCAGGTA+GGG + chr5_1:40548025-40548044 Msa0730720:three_prime_UTR 50.0%
GAGAGAAGGCGAGAGAGACA+AGG - chr5_1:40541527-40541546 None:intergenic 55.0%
TGCGATTTCGCGGTGAAGAG+AGG + chr5_1:40541927-40541946 Msa0730720:five_prime_UTR 55.0%
!! GCTGGAAGTGTTGTTGGTGC+TGG + chr5_1:40542050-40542069 Msa0730720:CDS 55.0%
GCATCTTCGTCTAGTCACGC+GGG + chr5_1:40542092-40542111 Msa0730720:CDS 55.0%
TGGCGCAACAGATTGCATGG+AGG - chr5_1:40542448-40542467 None:intergenic 55.0%
GGAGACCATTGGGATCGTGA+TGG + chr5_1:40543078-40543097 Msa0730720:CDS 55.0%
CAGACCCATCACGATCCCAA+TGG - chr5_1:40543086-40543105 None:intergenic 55.0%
GTGTCAGCTGCAACTCTACG+GGG - chr5_1:40543201-40543220 None:intergenic 55.0%
ACTAGGGGCTGAAGAGAAGC+AGG + chr5_1:40543326-40543345 Msa0730720:CDS 55.0%
CTAGGGGCTGAAGAGAAGCA+GGG + chr5_1:40543327-40543346 Msa0730720:CDS 55.0%
GCGGGTTTCATCCCCTAGTT+TGG + chr5_1:40543365-40543384 Msa0730720:CDS 55.0%
AGCAGTGGCACCCAAACTAG+GGG - chr5_1:40543379-40543398 None:intergenic 55.0%
CTAGCAGTGGCACCCAAACT+AGG - chr5_1:40543381-40543400 None:intergenic 55.0%
GGCAGTTCCGCTTTGATTGG+AGG + chr5_1:40543417-40543436 Msa0730720:CDS 55.0%
TTCCGCTTTGATTGGAGGGG+AGG + chr5_1:40543422-40543441 Msa0730720:CDS 55.0%
TCCGCTTTGATTGGAGGGGA+GGG + chr5_1:40543423-40543442 Msa0730720:CDS 55.0%
GTGGACATCTGCACTTGCAG+AGG + chr5_1:40543446-40543465 Msa0730720:CDS 55.0%
! TATGGCCGAGGCATTAGCAC+AGG + chr5_1:40543572-40543591 Msa0730720:CDS 55.0%
TGGAGCCTGTGCTAATGCCT+CGG - chr5_1:40543580-40543599 None:intergenic 55.0%
GGAGTTGAACGAGCTCGAGA+TGG - chr5_1:40543600-40543619 None:intergenic 55.0%
CCCCTCTTGATCCTCACAAC+TGG - chr5_1:40544304-40544323 None:intergenic 55.0%
!! TCGGCCATGGTGGATATTGG+GGG + chr5_1:40544784-40544803 Msa0730720:intron 55.0%
TGTTCGCCACACAAAGGTGG+TGG + chr5_1:40544819-40544838 Msa0730720:intron 55.0%
GTGGCAGTTTACGTATGGCG+GGG + chr5_1:40544843-40544862 Msa0730720:intron 55.0%
GCCATGGCGTCTACCATGAA+GGG + chr5_1:40544865-40544884 Msa0730720:intron 55.0%
TCCCTTCATGGTAGACGCCA+TGG - chr5_1:40544869-40544888 None:intergenic 55.0%
ATGGTGACACACCCAACCCT+TGG - chr5_1:40544944-40544963 None:intergenic 55.0%
TTACAGAGGGAGGTAGGAGG+AGG - chr5_1:40545272-40545291 None:intergenic 55.0%
CCATTACAGAGGGAGGTAGG+AGG - chr5_1:40545275-40545294 None:intergenic 55.0%
CCTCCTACCTCCCTCTGTAA+TGG + chr5_1:40545272-40545291 Msa0730720:intron 55.0%
! CACAAACCCACTGGTGGTGT+AGG - chr5_1:40546144-40546163 None:intergenic 55.0%
! CTACACCACCAGTGGGTTTG+TGG + chr5_1:40546142-40546161 Msa0730720:intron 55.0%
CACAACCACAAACCCACTGG+TGG - chr5_1:40546150-40546169 None:intergenic 55.0%
! CACCAGTGGGTTTGTGGTTG+TGG + chr5_1:40546148-40546167 Msa0730720:intron 55.0%
TGGTGCTTCCCCTACTTCCA+AGG + chr5_1:40546799-40546818 Msa0730720:CDS 55.0%
TTCAGCAGCTGCTCCTACAC+CGG + chr5_1:40546880-40546899 Msa0730720:CDS 55.0%
AGGTTACTGGGGTTCCTCAC+CGG - chr5_1:40546902-40546921 None:intergenic 55.0%
! TCCGCTCTCTGGGAGAGTTT+AGG - chr5_1:40546922-40546941 None:intergenic 55.0%
AGAGCGGAAGCCAGCTTCTT+TGG + chr5_1:40546934-40546953 Msa0730720:CDS 55.0%
GCCCCATTGCCAACAGATTG+CGG - chr5_1:40547160-40547179 None:intergenic 55.0%
GGGGCTAAACCGACTAGCAA+TGG + chr5_1:40547175-40547194 Msa0730720:CDS 55.0%
TCTTCGTTCTCTTGGCTGGG+AGG + chr5_1:40547291-40547310 Msa0730720:CDS 55.0%
CTGGGAGGAAAATGCAGACG+AGG + chr5_1:40547306-40547325 Msa0730720:CDS 55.0%
!! GTTAATGGGCTGGCAGGTAG+GGG + chr5_1:40548026-40548045 Msa0730720:three_prime_UTR 55.0%
!! GGGCTGTTTTCTCTCTGCTG+TGG + chr5_1:40548046-40548065 Msa0730720:three_prime_UTR 55.0%
!! TCGTGATGGGTCTGACCCGT+TGG + chr5_1:40543092-40543111 Msa0730720:CDS 60.0%
CCCCTCCCCTCCAATCAAAG+CGG - chr5_1:40543427-40543446 None:intergenic 60.0%
CCGCTTTGATTGGAGGGGAG+GGG + chr5_1:40543424-40543443 Msa0730720:CDS 60.0%
CTTTGATTGGAGGGGAGGGG+TGG + chr5_1:40543427-40543446 Msa0730720:CDS 60.0%
TCGAGCTCGTTCAACTCCCC+AGG + chr5_1:40543602-40543621 Msa0730720:CDS 60.0%
!! GCCATGGTGGATATTGGGGG+CGG + chr5_1:40544787-40544806 Msa0730720:intron 60.0%
!! CCATGGTGGATATTGGGGGC+GGG + chr5_1:40544788-40544807 Msa0730720:intron 60.0%
! GCCACACAAAGGTGGTGGTG+TGG + chr5_1:40544824-40544843 Msa0730720:intron 60.0%
GCCACACCACCACCTTTGTG+TGG - chr5_1:40544828-40544847 None:intergenic 60.0%
! GTTTACGTATGGCGGGGCCA+TGG + chr5_1:40544849-40544868 Msa0730720:intron 60.0%
GGCCATGGCGTCTACCATGA+AGG + chr5_1:40544864-40544883 Msa0730720:intron 60.0%
GGGTTGCTGTAGCGCACTCT+TGG - chr5_1:40546672-40546691 None:intergenic 60.0%
! GAAGCTGGCTTCCGCTCTCT+GGG - chr5_1:40546932-40546951 None:intergenic 60.0%
! AGAAGCTGGCTTCCGCTCTC+TGG - chr5_1:40546933-40546952 None:intergenic 60.0%
TCTCTGCTGTGGTAGGGTGC+TGG + chr5_1:40548057-40548076 Msa0730720:three_prime_UTR 60.0%
! CTCTGCTGTGGTAGGGTGCT+GGG + chr5_1:40548058-40548077 Msa0730720:three_prime_UTR 60.0%
CCCGCCCCCAATATCCACCA+TGG - chr5_1:40544791-40544810 None:intergenic 65.0%
CAGCTGCTCCTACACCGGTG+AGG + chr5_1:40546885-40546904 Msa0730720:CDS 65.0%
CTGGGGTTCCTCACCGGTGT+AGG - chr5_1:40546896-40546915 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 40541472 40548290 40541472 ID=Msa0730720;Name=Msa0730720
chr5_1 mRNA 40541472 40548290 40541472 ID=Msa0730720-mRNA-1;Parent=Msa0730720;Name=Msa0730720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=533|0.75|0.8|1|1|1|5|492|625
chr5_1 exon 40541472 40542113 40541472 ID=Msa0730720-mRNA-1:exon:11798;Parent=Msa0730720-mRNA-1
chr5_1 exon 40542863 40543623 40542863 ID=Msa0730720-mRNA-1:exon:11799;Parent=Msa0730720-mRNA-1
chr5_1 exon 40543739 40543828 40543739 ID=Msa0730720-mRNA-1:exon:11800;Parent=Msa0730720-mRNA-1
chr5_1 exon 40546602 40547375 40546602 ID=Msa0730720-mRNA-1:exon:11801;Parent=Msa0730720-mRNA-1
chr5_1 exon 40547655 40548290 40547655 ID=Msa0730720-mRNA-1:exon:11802;Parent=Msa0730720-mRNA-1
chr5_1 five_prime_UTR 40541472 40542004 40541472 ID=Msa0730720-mRNA-1:five_prime_utr;Parent=Msa0730720-mRNA-1
chr5_1 CDS 40542005 40542113 40542005 ID=Msa0730720-mRNA-1:cds;Parent=Msa0730720-mRNA-1
chr5_1 CDS 40542863 40543623 40542863 ID=Msa0730720-mRNA-1:cds;Parent=Msa0730720-mRNA-1
chr5_1 CDS 40543739 40543828 40543739 ID=Msa0730720-mRNA-1:cds;Parent=Msa0730720-mRNA-1
chr5_1 CDS 40546602 40547375 40546602 ID=Msa0730720-mRNA-1:cds;Parent=Msa0730720-mRNA-1
chr5_1 CDS 40547655 40547798 40547655 ID=Msa0730720-mRNA-1:cds;Parent=Msa0730720-mRNA-1
chr5_1 three_prime_UTR 40547799 40548290 40547799 ID=Msa0730720-mRNA-1:three_prime_utr;Parent=Msa0730720-mRNA-1
Gene Sequence

>Msa0730720

ATGGATAGAAGTGAACCTTCGTTAGTTCCAGAATGGTTGAGAAGTGCTGGAAGTGTTGTTGGTGCTGGCAATTCAGCCCAACATTTTGCATCTTCGTCTAGTCACGCGGATTCTCATTCGCCATCTGCAGCCAATAACAGTAGGAACAGATCTTCGAAGAATACTGGTGATTTTGATAGCTCGCGTTCTGCATTTCTTGATCGAACATCGTCAGCAAGTTCTAGGAGGGGTTCTATCAATGGTTCTGCTAAGCATGCTTACAGCAGTTTCAACAGAAATCATCGTGACAAGGACCGTGATAGAGAGAAAGATAGATCCAATTTTGGAGACCATTGGGATCGTGATGGGTCTGACCCGTTGGCCAACCTTTTTTCTGGAAGGATAGAGAGAGATACATTGCGGCGTTCTCATTCAATGGTTTCCAGGAAACAGGGTGAGACTTTACCCCGTAGAGTTGCAGCTGACACTAAATCAGGCGGTAGCAGCAACCACAACAATGGAAATGGCGCACTTTCTGTGGGTAGTGTTGGTAGTAGCATTCAGAAAGCTGTCTTTGACAAGGATTTTCCATCACTAGGGGCTGAAGAGAAGCAGGGAATAGCTGAAATTGGGCGGGTTTCATCCCCTAGTTTGGGTGCCACTGCTAGTCAAAGTTTACCTGTTGGCAGTTCCGCTTTGATTGGAGGGGAGGGGTGGACATCTGCACTTGCAGAGGTACCTTCGGTAATTGGAAGCAGTAGCGCTGGATCTTCGTCAGCACAGCAAACTATTGCTGCAACTTCTGGATCTGTATCATCTAGTACTGCAGCTGGTCTTAATATGGCCGAGGCATTAGCACAGGCTCCATCTCGAGCTCGTTCAACTCCCCAGGTGTCTGTTAAAACACAAAGGCTTGAGGAACTGGCTATCAAGCAGTCAAGACAATTGATTCCAGTAACACCATCCATGCCTAAGGCTTTGGCTCTTAATTCTTCTGAGAAATCAAAGCCAAAAACCGCTGTCAGAAATGCTGAGATGAATGTAGCTACCAAGAGTGCGCTACAGCAACCCTCTGCATTGCATATTGCTAGTCAGTCTGTTCGCATTGTAAATGCCAAAGTTGATGTTCCAAAGACATCTGGGAAGTTTACTGATCTTAAATCAGTGGTGTGGGAAAATGGTGCTTCCCCTACTTCCAAGGATGTTTCAAATCCGACAAATTATGCTAATAGTAAATCGGCAAATCAACATTCTGTTGCTTCAGCAGCTGCTCCTACACCGGTGAGGAACCCCAGTAACCTAAACTCTCCCAGAGAGCGGAAGCCAGCTTCTTTGGATTTGAAATTAGGCACTACTTTGGATAAGAAACAATCCATTTCTCAAGTGAAGAGCCGGAATGATTTCTTCAATCTGCTTAAGAACAAAACAGCGACGAACTCGTCTACCGTTTTTCCAGATTCTGGCCAGATGGTTTCATCTCCTACATTGGAAAAATCTGGTGAAGTAAACAGGGAATCAGTTATGCCTTCTGCAAGTCCGCAATCTGTTGGCAATGGGGCTAAACCGACTAGCAATGGCAATGCTCATGGCCATGAAGAGCTTTGCAGAATTTCTGATGATGAGAAAAATTCCAGAGCTACGGTTTATCCAGATGAGGAAGAAGCTGCATTTCTTCGTTCTCTTGGCTGGGAGGAAAATGCAGACGAGGATGAAGGCCTTACTGAAGAGGAGATCAATGCTTTTTATCAAGAGGTGTGCAAGAAATTGGATCCCTCCACACTCAAGCTATGTATTGAGGGTATGCAGCCACAGCTATCCAAGTTGTTTGATTCTTGTGCATCTAACTTGCGTGGAGCATCTGCTGAATTGAACTCTTCTGATCCCAGATCTGAAGCTTGA
Protein sequence

>Msa0730720

MDRSEPSLVPEWLRSAGSVVGAGNSAQHFASSSSHADSHSPSAANNSRNRSSKNTGDFDSSRSAFLDRTSSASSRRGSINGSAKHAYSSFNRNHRDKDRDREKDRSNFGDHWDRDGSDPLANLFSGRIERDTLRRSHSMVSRKQGETLPRRVAADTKSGGSSNHNNGNGALSVGSVGSSIQKAVFDKDFPSLGAEEKQGIAEIGRVSSPSLGATASQSLPVGSSALIGGEGWTSALAEVPSVIGSSSAGSSSAQQTIAATSGSVSSSTAAGLNMAEALAQAPSRARSTPQVSVKTQRLEELAIKQSRQLIPVTPSMPKALALNSSEKSKPKTAVRNAEMNVATKSALQQPSALHIASQSVRIVNAKVDVPKTSGKFTDLKSVVWENGASPTSKDVSNPTNYANSKSANQHSVASAAAPTPVRNPSNLNSPRERKPASLDLKLGTTLDKKQSISQVKSRNDFFNLLKNKTATNSSTVFPDSGQMVSSPTLEKSGEVNRESVMPSASPQSVGNGAKPTSNGNAHGHEELCRISDDEKNSRATVYPDEEEAAFLRSLGWEENADEDEGLTEEEINAFYQEVCKKLDPSTLKLCIEGMQPQLSKLFDSCASNLRGASAELNSSDPRSEA*