Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519390 | XP_013461781.1 | 96.000 | 450 | 11 | 1 | 1 | 450 | 1 | 443 | 0.0 | 884 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519390 | sp|Q5S1U6|IFRD1_PIG | 24.887 | 442 | 265 | 14 | 16 | 432 | 41 | 440 | 4.80e-26 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519390 | A0A072V2D3 | 96.000 | 450 | 11 | 1 | 1 | 450 | 1 | 443 | 0.0 | 884 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026870 | Msa0519390 | 0.812961 | 3.258068e-51 | -8.615850e-47 |
| Msa0038020 | Msa0519390 | 0.856346 | 3.422714e-62 | -8.615850e-47 |
| Msa0042550 | Msa0519390 | 0.805917 | 1.058841e-49 | -8.615850e-47 |
| Msa0052860 | Msa0519390 | 0.816298 | 5.943588e-52 | -8.615850e-47 |
| Msa0055070 | Msa0519390 | 0.810413 | 1.167248e-50 | -8.615850e-47 |
| Msa0072170 | Msa0519390 | 0.814759 | 1.308052e-51 | -8.615850e-47 |
| Msa0085720 | Msa0519390 | 0.879168 | 1.552905e-69 | -8.615850e-47 |
| Msa0090030 | Msa0519390 | 0.808088 | 3.677974e-50 | -8.615850e-47 |
| Msa0101020 | Msa0519390 | 0.803463 | 3.444633e-49 | -8.615850e-47 |
| Msa0108850 | Msa0519390 | 0.817651 | 2.952854e-52 | -8.615850e-47 |
| Msa0120370 | Msa0519390 | -0.815939 | 7.148431e-52 | -8.615850e-47 |
| Msa0120540 | Msa0519390 | 0.814618 | 1.405613e-51 | -8.615850e-47 |
| Msa0128650 | Msa0519390 | 0.821827 | 3.282224e-53 | -8.615850e-47 |
| Msa0139340 | Msa0519390 | -0.825177 | 5.402739e-54 | -8.615850e-47 |
| Msa0140170 | Msa0519390 | 0.995562 | 1.610968e-217 | -8.615850e-47 |
| Msa0140400 | Msa0519390 | 0.808517 | 2.978768e-50 | -8.615850e-47 |
| Msa0145110 | Msa0519390 | 0.806272 | 8.917726e-50 | -8.615850e-47 |
| Msa0151940 | Msa0519390 | 0.805265 | 1.450864e-49 | -8.615850e-47 |
| Msa0151950 | Msa0519390 | 0.806833 | 6.787696e-50 | -8.615850e-47 |
| Msa0163620 | Msa0519390 | -0.805643 | 1.208961e-49 | -8.615850e-47 |
| Msa0173330 | Msa0519390 | 0.816745 | 4.719967e-52 | -8.615850e-47 |
| Msa0174690 | Msa0519390 | 0.822961 | 1.790225e-53 | -8.615850e-47 |
| Msa0175050 | Msa0519390 | 0.850501 | 1.630433e-60 | -8.615850e-47 |
| Msa0178510 | Msa0519390 | 0.805093 | 1.576534e-49 | -8.615850e-47 |
| Msa0193540 | Msa0519390 | 0.858479 | 8.011650e-63 | -8.615850e-47 |
| Msa0198520 | Msa0519390 | 0.806055 | 9.906684e-50 | -8.615850e-47 |
| Msa0208020 | Msa0519390 | 0.820287 | 7.428984e-53 | -8.615850e-47 |
| Msa0208810 | Msa0519390 | 0.811326 | 7.404863e-51 | -8.615850e-47 |
| Msa0227230 | Msa0519390 | 0.801069 | 1.071516e-48 | -8.615850e-47 |
| Msa0233610 | Msa0519390 | 0.855754 | 5.100850e-62 | -8.615850e-47 |
| Msa0235470 | Msa0519390 | 0.848375 | 6.379888e-60 | -8.615850e-47 |
| Msa0370310 | Msa0519390 | 0.823892 | 1.084236e-53 | -8.615850e-47 |
| Msa0370870 | Msa0519390 | 0.831826 | 1.339377e-55 | -8.615850e-47 |
| Msa0377440 | Msa0519390 | 0.812487 | 4.136239e-51 | -8.615850e-47 |
| Msa0388030 | Msa0519390 | -0.819255 | 1.278223e-52 | -8.615850e-47 |
| Msa0390960 | Msa0519390 | 0.806972 | 6.344951e-50 | -8.615850e-47 |
| Msa0404700 | Msa0519390 | 0.821143 | 4.721548e-53 | -8.615850e-47 |
| Msa0417650 | Msa0519390 | 0.829623 | 4.640046e-55 | -8.615850e-47 |
| Msa0417730 | Msa0519390 | 0.815252 | 1.017070e-51 | -8.615850e-47 |
| Msa0431020 | Msa0519390 | 0.857072 | 2.093909e-62 | -8.615850e-47 |
| Msa0442650 | Msa0519390 | 0.823394 | 1.418361e-53 | -8.615850e-47 |
| Msa0462540 | Msa0519390 | 0.804065 | 2.583432e-49 | -8.615850e-47 |
| Msa0464900 | Msa0519390 | 0.839565 | 1.468301e-57 | -8.615850e-47 |
| Msa0482180 | Msa0519390 | 0.828303 | 9.688765e-55 | -8.615850e-47 |
| Msa0250670 | Msa0519390 | 0.826769 | 2.261497e-54 | -8.615850e-47 |
| Msa0252240 | Msa0519390 | 0.812939 | 3.293507e-51 | -8.615850e-47 |
| Msa0259270 | Msa0519390 | 0.809023 | 2.322001e-50 | -8.615850e-47 |
| Msa0266210 | Msa0519390 | 0.835977 | 1.225269e-56 | -8.615850e-47 |
| Msa0266240 | Msa0519390 | 0.800153 | 1.647341e-48 | -8.615850e-47 |
| Msa0274630 | Msa0519390 | 0.861281 | 1.145565e-63 | -8.615850e-47 |
| Msa0279210 | Msa0519390 | -0.801683 | 8.019055e-49 | -8.615850e-47 |
| Msa0281480 | Msa0519390 | 0.842319 | 2.779941e-58 | -8.615850e-47 |
| Msa0287670 | Msa0519390 | 0.837407 | 5.293967e-57 | -8.615850e-47 |
| Msa0289400 | Msa0519390 | 0.849204 | 3.757177e-60 | -8.615850e-47 |
| Msa0307560 | Msa0519390 | 0.813343 | 2.685597e-51 | -8.615850e-47 |
| Msa0312310 | Msa0519390 | 0.833148 | 6.296978e-56 | -8.615850e-47 |
| Msa0314060 | Msa0519390 | 0.847916 | 8.544672e-60 | -8.615850e-47 |
| Msa0320610 | Msa0519390 | 0.825783 | 3.882764e-54 | -8.615850e-47 |
| Msa0329430 | Msa0519390 | 0.825817 | 3.811872e-54 | -8.615850e-47 |
| Msa0342460 | Msa0519390 | -0.828243 | 1.001948e-54 | -8.615850e-47 |
| Msa0362060 | Msa0519390 | 0.813843 | 2.084193e-51 | -8.615850e-47 |
| Msa0363100 | Msa0519390 | 0.802581 | 5.241609e-49 | -8.615850e-47 |
| Msa0363170 | Msa0519390 | 0.826966 | 2.029593e-54 | -8.615850e-47 |
| Msa0519390 | Msa0530650 | 0.822242 | 2.630096e-53 | -8.615850e-47 |
| Msa0519390 | Msa0537770 | 0.805278 | 1.442293e-49 | -8.615850e-47 |
| Msa0519390 | Msa0573040 | 0.826796 | 2.228845e-54 | -8.615850e-47 |
| Msa0519390 | Msa0587190 | 0.828654 | 7.971717e-55 | -8.615850e-47 |
| Msa0519390 | Msa0614990 | 0.800182 | 1.624608e-48 | -8.615850e-47 |
| Msa0519390 | Msa0615360 | 0.851390 | 9.156789e-61 | -8.615850e-47 |
| Msa0519390 | Msa0626990 | 0.821185 | 4.619382e-53 | -8.615850e-47 |
| Msa0519390 | Msa0627350 | 0.815576 | 8.614651e-52 | -8.615850e-47 |
| Msa0519390 | Msa0643250 | 0.802517 | 5.404759e-49 | -8.615850e-47 |
| Msa0519390 | Msa0653320 | -0.806594 | 7.625451e-50 | -8.615850e-47 |
| Msa0519390 | Msa0662170 | 0.820340 | 7.224415e-53 | -8.615850e-47 |
| Msa0519390 | Msa0664760 | 0.803488 | 3.402998e-49 | -8.615850e-47 |
| Msa0519390 | Msa0679550 | 0.835747 | 1.401860e-56 | -8.615850e-47 |
| Msa0519390 | Msa0693100 | 0.818016 | 2.442213e-52 | -8.615850e-47 |
| Msa0519390 | Msa0715110 | 0.803993 | 2.673863e-49 | -8.615850e-47 |
| Msa0519390 | Msa0724950 | 0.821390 | 4.141628e-53 | -8.615850e-47 |
| Msa0519390 | Msa0730720 | 0.801056 | 1.077888e-48 | -8.615850e-47 |
| Msa0519390 | Msa0737800 | 0.817673 | 2.918296e-52 | -8.615850e-47 |
| Msa0519390 | Msa0748730 | 0.807416 | 5.108110e-50 | -8.615850e-47 |
| Msa0519390 | Msa0757050 | 0.804201 | 2.420099e-49 | -8.615850e-47 |
| Msa0519390 | Msa0763080 | 0.816519 | 5.305092e-52 | -8.615850e-47 |
| Msa0519390 | Msa0798030 | 0.804267 | 2.344960e-49 | -8.615850e-47 |
| Msa0519390 | Msa0817270 | 0.816823 | 4.532848e-52 | -8.615850e-47 |
| Msa0519390 | Msa0845070 | 0.828192 | 1.030357e-54 | -8.615850e-47 |
| Msa0519390 | Msa0849810 | 0.800235 | 1.585086e-48 | -8.615850e-47 |
| Msa0519390 | Msa0908170 | 0.802306 | 5.971917e-49 | -8.615850e-47 |
| Msa0519390 | Msa0922030 | 0.810406 | 1.171046e-50 | -8.615850e-47 |
| Msa0519390 | Msa0944730 | 0.869368 | 3.263276e-66 | -8.615850e-47 |
| Msa0519390 | Msa0981310 | 0.806520 | 7.905805e-50 | -8.615850e-47 |
| Msa0519390 | Msa0993530 | 0.800332 | 1.514658e-48 | -8.615850e-47 |
| Msa0519390 | Msa1010460 | 0.817333 | 3.481334e-52 | -8.615850e-47 |
| Msa0519390 | Msa1012500 | 0.809910 | 1.497890e-50 | -8.615850e-47 |
| Msa0519390 | Msa1021510 | 0.830997 | 2.142171e-55 | -8.615850e-47 |
| Msa0519390 | Msa1031770 | 0.806360 | 8.544294e-50 | -8.615850e-47 |
| Msa0519390 | Msa1032640 | 0.809733 | 1.635612e-50 | -8.615850e-47 |
| Msa0519390 | Msa1040520 | 0.810396 | 1.176837e-50 | -8.615850e-47 |
| Msa0519390 | Msa1048700 | 0.815565 | 8.661934e-52 | -8.615850e-47 |
| Msa0519390 | Msa1070840 | 0.812534 | 4.040355e-51 | -8.615850e-47 |
| Msa0519390 | Msa1072530 | -0.844540 | 7.096264e-59 | -8.615850e-47 |
| Msa0519390 | Msa1096550 | 0.807401 | 5.145948e-50 | -8.615850e-47 |
| Msa0519390 | Msa1098270 | 0.808339 | 3.251486e-50 | -8.615850e-47 |
| Msa0519390 | Msa1105500 | 0.821252 | 4.457914e-53 | -8.615850e-47 |
| Msa0519390 | Msa1118760 | 0.806898 | 6.578752e-50 | -8.615850e-47 |
| Msa0519390 | Msa1127770 | 0.805366 | 1.381823e-49 | -8.615850e-47 |
| Msa0519390 | Msa1128330 | 0.838140 | 3.432664e-57 | -8.615850e-47 |
| Msa0519390 | Msa1130530 | 0.824186 | 9.250627e-54 | -8.615850e-47 |
| Msa0519390 | Msa1130670 | -0.800215 | 1.600122e-48 | -8.615850e-47 |
| Msa0519390 | Msa1133570 | 0.848041 | 7.887882e-60 | -8.615850e-47 |
| Msa0519390 | Msa1135880 | 0.808795 | 2.598236e-50 | -8.615850e-47 |
| Msa0519390 | Msa1148650 | 0.800863 | 1.180171e-48 | -8.615850e-47 |
| Msa0519390 | Msa1158660 | 0.831743 | 1.404139e-55 | -8.615850e-47 |
| Msa0519390 | Msa1165220 | 0.816648 | 4.961687e-52 | -8.615850e-47 |
| Msa0519390 | Msa1174310 | 0.829092 | 6.246582e-55 | -8.615850e-47 |
| Msa0519390 | Msa1182640 | 0.813516 | 2.460486e-51 | -8.615850e-47 |
| Msa0519390 | Msa1202750 | 0.825777 | 3.896147e-54 | -8.615850e-47 |
| Msa0519390 | Msa1215890 | 0.805525 | 1.280129e-49 | -8.615850e-47 |
| Msa0519390 | Msa1215920 | 0.803666 | 3.126726e-49 | -8.615850e-47 |
| Msa0519390 | Msa1229850 | 0.843180 | 1.641859e-58 | -8.615850e-47 |
| Msa0519390 | Msa1235400 | 0.814791 | 1.287205e-51 | -8.615850e-47 |
| Msa0519390 | Msa1241800 | 0.814124 | 1.807838e-51 | -8.615850e-47 |
| Msa0519390 | Msa1258370 | 0.818609 | 1.792520e-52 | -8.615850e-47 |
| Msa0519390 | Msa1272520 | 0.827339 | 1.652516e-54 | -8.615850e-47 |
| Msa0519390 | Msa1280620 | 0.850908 | 1.252616e-60 | -8.615850e-47 |
| Msa0519390 | Msa1294960 | 0.803941 | 2.741683e-49 | -8.615850e-47 |
| Msa0519390 | Msa1300860 | 0.814341 | 1.618655e-51 | -8.615850e-47 |
| Msa0519390 | Msa1310660 | 0.858142 | 1.008937e-62 | -8.615850e-47 |
| Msa0519390 | Msa1314770 | 0.829200 | 5.880009e-55 | -8.615850e-47 |
| Msa0519390 | Msa1341490 | 0.814959 | 1.180940e-51 | -8.615850e-47 |
| Msa0519390 | Msa1350690 | 0.837941 | 3.861179e-57 | -8.615850e-47 |
| Msa0519390 | Msa1360240 | 0.807688 | 4.472166e-50 | -8.615850e-47 |
| Msa0519390 | Msa1360280 | 0.830570 | 2.726294e-55 | -8.615850e-47 |
| Msa0519390 | Msa1363700 | 0.814603 | 1.416483e-51 | -8.615850e-47 |
| Msa0519390 | Msa1371090 | 0.805253 | 1.459726e-49 | -8.615850e-47 |
| Msa0519390 | Msa1371240 | 0.803506 | 3.374942e-49 | -8.615850e-47 |
| Msa0519390 | Msa1372150 | 0.808085 | 3.682827e-50 | -8.615850e-47 |
| Msa0519390 | Msa1390790 | 0.807587 | 4.698725e-50 | -8.615850e-47 |
| Msa0519390 | Msa1400070 | 0.842050 | 3.275547e-58 | -8.615850e-47 |
| Msa0519390 | Msa1402270 | 0.803695 | 3.083370e-49 | -8.615850e-47 |
| Msa0519390 | Msa1422840 | 0.827298 | 1.690123e-54 | -8.615850e-47 |
| Msa0519390 | Msa1426570 | 0.826864 | 2.147005e-54 | -8.615850e-47 |
| Msa0519390 | Msa1435400 | 0.823017 | 1.736582e-53 | -8.615850e-47 |
| Msa0519390 | Msa1445220 | 0.843536 | 1.318896e-58 | -8.615850e-47 |
| Msa0519390 | Msa1449050 | 0.802537 | 5.351834e-49 | -8.615850e-47 |
| Msa0519390 | Msa1458030 | 0.813972 | 1.952631e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519390 | MtrunA17_Chr3g0134791 | 96.000 | 450 | 11 | 1 | 1 | 450 | 1 | 443 | 0.0 | 884 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519390 | AT1G27760.3 | 56.703 | 455 | 176 | 6 | 1 | 449 | 1 | 440 | 5.83e-177 | 503 |
| Msa0519390 | AT1G27760.1 | 56.264 | 455 | 174 | 7 | 1 | 449 | 1 | 436 | 4.05e-173 | 493 |
| Msa0519390 | AT1G27760.2 | 56.909 | 427 | 159 | 7 | 29 | 449 | 18 | 425 | 2.10e-171 | 488 |
Find 95 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATACATTGGAACCTAATT+TGG | 0.073567 | 3_4:-71436062 | None:intergenic |
| ATATGATGCAGTGCTTTATT+TGG | 0.158188 | 3_4:+71438485 | Msa0519390:three_prime_UTR |
| CCAATCTTCATTGAAATTTC+AGG | 0.167869 | 3_4:-71437618 | None:intergenic |
| GCCTTGTTCAAAACTGAATT+TGG | 0.179293 | 3_4:-71438165 | None:intergenic |
| CCCATTGTAACAGTTGTTTC+TGG | 0.235321 | 3_4:-71434687 | None:intergenic |
| GTTTCTGGTGGTTTGTTGTT+AGG | 0.258699 | 3_4:-71434672 | None:intergenic |
| ATCCACAAGTAAATCAATTT+AGG | 0.266902 | 3_4:-71438735 | None:intergenic |
| CTGACTATTAAGATCTTTCT+TGG | 0.273029 | 3_4:-71437426 | None:intergenic |
| TCTTGAATAAGCTGTGTATT+AGG | 0.276385 | 3_4:-71434431 | None:intergenic |
| ATGAAAGATGAAGAATAATT+AGG | 0.279534 | 3_4:-71434611 | None:intergenic |
| ATATTCTTACAAGGATTAAA+AGG | 0.280325 | 3_4:+71437347 | Msa0519390:CDS |
| ACTCTTGAAAGCATCAATTA+TGG | 0.282875 | 3_4:-71435118 | None:intergenic |
| ACCGCTGCTTATTGAGTAAC+TGG | 0.290403 | 3_4:-71438194 | None:intergenic |
| TATGATGCAGTGCTTTATTT+GGG | 0.309736 | 3_4:+71438486 | Msa0519390:three_prime_UTR |
| TCATTCCATTGCAGGTTGTT+TGG | 0.310885 | 3_4:+71435746 | Msa0519390:intron |
| TGGGGATTCAATTATTCATT+TGG | 0.317931 | 3_4:+71438505 | Msa0519390:three_prime_UTR |
| TTGATGCATTAGATGTAAAA+AGG | 0.332269 | 3_4:+71434972 | Msa0519390:CDS |
| CGGCCATTATTCAGTCAATA+TGG | 0.334875 | 3_4:+71438434 | Msa0519390:CDS |
| ATCTAGAAGACCGGATAAAT+AGG | 0.347265 | 3_4:-71437183 | None:intergenic |
| CCGCTGATTGCTGTGTTGTC+TGG | 0.353005 | 3_4:+71438545 | Msa0519390:three_prime_UTR |
| TTTCTGGTGGTTTGTTGTTA+GGG | 0.357800 | 3_4:-71434671 | None:intergenic |
| TGAAGAATCTGTTACCCCTT+TGG | 0.370160 | 3_4:+71435809 | Msa0519390:CDS |
| CAGCTTATTCAAGATTGTTT+CGG | 0.373983 | 3_4:+71434440 | Msa0519390:five_prime_UTR |
| GAACCTGTTCAGAGATATCT+TGG | 0.374329 | 3_4:+71437451 | Msa0519390:CDS |
| CATACATTGGAACCTAATTT+GGG | 0.377504 | 3_4:-71436061 | None:intergenic |
| AATTTCATCAAGCACTTCCT+TGG | 0.377807 | 3_4:+71437794 | Msa0519390:CDS |
| AGCATCAATTATGGCTGAAA+AGG | 0.383011 | 3_4:-71435109 | None:intergenic |
| CGAGTGATCCATCCCAAATT+AGG | 0.396381 | 3_4:+71436049 | Msa0519390:CDS |
| ATCAAGCACTTCCTTGGAGG+GGG | 0.412529 | 3_4:+71437800 | Msa0519390:CDS |
| AGATGCAAGAGTTATCTCTT+TGG | 0.428662 | 3_4:-71435642 | None:intergenic |
| CCTGAAATTTCAATGAAGAT+TGG | 0.428816 | 3_4:+71437618 | Msa0519390:CDS |
| CATCCATATTGACTGAATAA+TGG | 0.431054 | 3_4:-71438437 | None:intergenic |
| AATCCAAGATATCTCTGAAC+AGG | 0.433115 | 3_4:-71437454 | None:intergenic |
| TCTGTGGAGGCTGGTGGAAA+AGG | 0.441263 | 3_4:+71437398 | Msa0519390:CDS |
| TGTATAGTTGCTGGACTGCT+TGG | 0.454319 | 3_4:+71435961 | Msa0519390:intron |
| CGAAGTAGATTCGCGTACTA+CGG | 0.466555 | 3_4:+71438590 | Msa0519390:three_prime_UTR |
| ACCAGAAACAACTGTTACAA+TGG | 0.475750 | 3_4:+71434686 | Msa0519390:exon |
| AATGGCGAACATAGAATGTC+TGG | 0.477792 | 3_4:+71438015 | Msa0519390:CDS |
| GGATGAGACATGAGTTTAAG+TGG | 0.479097 | 3_4:+71438455 | Msa0519390:exon |
| GCAGTTATTAATTGAGCAGA+AGG | 0.482620 | 3_4:-71436240 | None:intergenic |
| TCTGATCTCATGAATGTGTC+TGG | 0.484091 | 3_4:+71434902 | Msa0519390:CDS |
| TAACAAGAGATTCATCCAAA+GGG | 0.486083 | 3_4:-71435824 | None:intergenic |
| AACCTAAATTGATTTACTTG+TGG | 0.491543 | 3_4:+71438733 | Msa0519390:three_prime_UTR |
| TTCATCAAGCACTTCCTTGG+AGG | 0.494607 | 3_4:+71437797 | Msa0519390:CDS |
| CTTATTGAGTAACTGGGTCC+TGG | 0.494718 | 3_4:-71438187 | None:intergenic |
| AGTTCAATAGCCTATTTATC+CGG | 0.495022 | 3_4:+71437173 | Msa0519390:intron |
| TTTACAAGAACGAAAACAAA+GGG | 0.500771 | 3_4:-71434588 | None:intergenic |
| ATCACTTGCATTCTTAGCCT+CGG | 0.503479 | 3_4:-71437288 | None:intergenic |
| GGGGTTCATTAAACATATGC+AGG | 0.506623 | 3_4:+71437820 | Msa0519390:CDS |
| AGAAACTAAAGACATCTTGT+AGG | 0.508490 | 3_4:-71437969 | None:intergenic |
| GGTTGTTTGGCCTTGACAGT+TGG | 0.510973 | 3_4:+71435759 | Msa0519390:intron |
| GTCGTGGTCTCAAATGATAC+AGG | 0.513312 | 3_4:+71437662 | Msa0519390:CDS |
| TCATCAAGCACTTCCTTGGA+GGG | 0.513702 | 3_4:+71437798 | Msa0519390:CDS |
| AGAAGAAACAGAGCGATCAA+TGG | 0.515869 | 3_4:+71436015 | Msa0519390:CDS |
| GTCTTCTTTATCTAGAAGAC+CGG | 0.516274 | 3_4:-71437192 | None:intergenic |
| CCAGAAACAACTGTTACAAT+GGG | 0.518714 | 3_4:+71434687 | Msa0519390:exon |
| AATTGCTGCTGGTGAAGCAC+TGG | 0.528366 | 3_4:+71437226 | Msa0519390:CDS |
| AATCAACAGGGCAGGAACTT+CGG | 0.529037 | 3_4:+71438414 | Msa0519390:intron |
| TAGAATGTCTGGTGGTGAAA+AGG | 0.530016 | 3_4:+71438026 | Msa0519390:CDS |
| CATCAAGCACTTCCTTGGAG+GGG | 0.533991 | 3_4:+71437799 | Msa0519390:CDS |
| AATCTTTCTGTGGAGGCTGG+TGG | 0.542256 | 3_4:+71437392 | Msa0519390:CDS |
| TGAAGCTGAATTCAAAACAT+TGG | 0.544268 | 3_4:+71436307 | Msa0519390:CDS |
| GAAAGTTACATATTCTTACA+AGG | 0.545343 | 3_4:+71437338 | Msa0519390:CDS |
| TCAAGCACTTCCTTGGAGGG+GGG | 0.547072 | 3_4:+71437801 | Msa0519390:CDS |
| ACTCTTGCATCTCAAGCCAT+TGG | 0.553154 | 3_4:+71435653 | Msa0519390:CDS |
| CATTGGAACCTAATTTGGGA+TGG | 0.553532 | 3_4:-71436057 | None:intergenic |
| GACACATTCATGAGATCAGA+TGG | 0.557531 | 3_4:-71434899 | None:intergenic |
| ATTGTAACAGTTGTTTCTGG+TGG | 0.561054 | 3_4:-71434684 | None:intergenic |
| CTAACAAGAGATTCATCCAA+AGG | 0.563908 | 3_4:-71435825 | None:intergenic |
| TAACTGCTGTGGTGTCTGCA+TGG | 0.566660 | 3_4:+71436256 | Msa0519390:CDS |
| GTCTTCTAGATAAAGAAGAC+AGG | 0.574234 | 3_4:+71437195 | Msa0519390:CDS |
| TGAATTCAAAACATTGGCAA+AGG | 0.585766 | 3_4:+71436313 | Msa0519390:CDS |
| GAAATTTCAATGAAGATTGG+TGG | 0.588523 | 3_4:+71437621 | Msa0519390:CDS |
| AAGAATATGTAACTTTCCTG+TGG | 0.588647 | 3_4:-71437332 | None:intergenic |
| TAAGCAGCGGTTACAATCTG+AGG | 0.591489 | 3_4:+71438206 | Msa0519390:CDS |
| TCAGATTGCCTACGGTAGAG+AGG | 0.593998 | 3_4:-71436287 | None:intergenic |
| AGAAAGATCTTAATAGTCAG+AGG | 0.594407 | 3_4:+71437429 | Msa0519390:CDS |
| ATTCAGCTTCAGATTGCCTA+CGG | 0.596364 | 3_4:-71436295 | None:intergenic |
| ATGATGCAGTGCTTTATTTG+GGG | 0.609299 | 3_4:+71438487 | Msa0519390:three_prime_UTR |
| CGAAAACAAAGGGAATTGAA+AGG | 0.618578 | 3_4:-71434578 | None:intergenic |
| AGGTCAGTAAGAATTGCTGC+TGG | 0.620402 | 3_4:+71437215 | Msa0519390:CDS |
| ATCACTACATCCAACTGTCA+AGG | 0.621289 | 3_4:-71435769 | None:intergenic |
| AGCGATCAATGGACATAATG+TGG | 0.622561 | 3_4:+71436026 | Msa0519390:CDS |
| TCAAGAAGAGAGTAAACCAC+AGG | 0.630235 | 3_4:+71437316 | Msa0519390:CDS |
| TGCTCAATTAATAACTGCTG+TGG | 0.636366 | 3_4:+71436245 | Msa0519390:CDS |
| GATGAGACATGAGTTTAAGT+GGG | 0.636453 | 3_4:+71438456 | Msa0519390:exon |
| GTTTACAAGAACGAAAACAA+AGG | 0.637113 | 3_4:-71434589 | None:intergenic |
| CCCAGTTACTCAATAAGCAG+CGG | 0.664075 | 3_4:+71438193 | Msa0519390:CDS |
| CCGCTGCTTATTGAGTAACT+GGG | 0.664335 | 3_4:-71438193 | None:intergenic |
| AACAAGAGATTCATCCAAAG+GGG | 0.670534 | 3_4:-71435823 | None:intergenic |
| CCAGACAACACAGCAATCAG+CGG | 0.682498 | 3_4:-71438545 | None:intergenic |
| TTTATTTAAGGGGTACCACG+AGG | 0.685031 | 3_4:+71435079 | Msa0519390:intron |
| TTATTTAAGGGGTACCACGA+GGG | 0.697090 | 3_4:+71435080 | Msa0519390:intron |
| ATTCTCTACAGACATCGTCG+TGG | 0.723009 | 3_4:+71437646 | Msa0519390:CDS |
| GGCGAACATAGAATGTCTGG+TGG | 0.743950 | 3_4:+71438018 | Msa0519390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTGTTAAAAAAATGAAT+CGG | - | chr3_4:71434648-71434667 | None:intergenic | 10.0% |
| !!! | ATATAACTTGATTATTTTTT+AGG | + | chr3_4:71435195-71435214 | Msa0519390:intron | 10.0% |
| !!! | AGTTTTTTTTTTTTTTTTGA+AGG | - | chr3_4:71435280-71435299 | None:intergenic | 10.0% |
| !!! | ATCAATATTTAACTTAATGA+TGG | - | chr3_4:71435017-71435036 | None:intergenic | 15.0% |
| !!! | TAAATATTGATGATTATTGA+AGG | + | chr3_4:71435026-71435045 | Msa0519390:intron | 15.0% |
| !!! | TTTTCTGTTGAATTTATTTA+AGG | + | chr3_4:71435067-71435086 | Msa0519390:intron | 15.0% |
| !! | TTTCTGTTGAATTTATTTAA+GGG | + | chr3_4:71435068-71435087 | Msa0519390:intron | 15.0% |
| !!! | TATTTTTTAGGTTTTTGTTT+TGG | + | chr3_4:71435207-71435226 | Msa0519390:intron | 15.0% |
| !! | ACATACATTATATATGAAAA+AGG | - | chr3_4:71435700-71435719 | None:intergenic | 15.0% |
| !! | TATAACATCAAAAACATAAA+AGG | - | chr3_4:71435916-71435935 | None:intergenic | 15.0% |
| !!! | CAAAATAAGTTGAAAAATAT+CGG | - | chr3_4:71436819-71436838 | None:intergenic | 15.0% |
| !!! | CAACTTATTTTGATAATTTA+AGG | + | chr3_4:71436827-71436846 | Msa0519390:intron | 15.0% |
| !! | ACTAAATTATTAGGAAAAAA+AGG | + | chr3_4:71436913-71436932 | Msa0519390:intron | 15.0% |
| !! | CTAAATTATTAGGAAAAAAA+GGG | + | chr3_4:71436914-71436933 | Msa0519390:intron | 15.0% |
| !!! | TTTGCTTATATTTAAGATTT+AGG | - | chr3_4:71436940-71436959 | None:intergenic | 15.0% |
| !! | TCAAATAATAGTAACAATAA+GGG | - | chr3_4:71437517-71437536 | None:intergenic | 15.0% |
| !! | TAAATAAATGAAAGAAAACA+AGG | - | chr3_4:71437692-71437711 | None:intergenic | 15.0% |
| !!! | GTTGCTTTTTTTTTTTTTTT+TGG | + | chr3_4:71437853-71437872 | Msa0519390:intron | 15.0% |
| !! | ATGAAAGATGAAGAATAATT+AGG | - | chr3_4:71434614-71434633 | None:intergenic | 20.0% |
| !! | TTCTGTTGAATTTATTTAAG+GGG | + | chr3_4:71435069-71435088 | Msa0519390:intron | 20.0% |
| !! | TGTTAGAAGTAAAAATGTTT+CGG | + | chr3_4:71435842-71435861 | Msa0519390:CDS | 20.0% |
| !!! | ACTTTTTAAAAATGAAAGCA+TGG | - | chr3_4:71436542-71436561 | None:intergenic | 20.0% |
| !!! | TTTTTCCTAATAATTTAGTC+CGG | - | chr3_4:71436912-71436931 | None:intergenic | 20.0% |
| !! | ACATAATTTCACACTTATTA+AGG | - | chr3_4:71436999-71437018 | None:intergenic | 20.0% |
| !!! | TGTATTTTTACTTATAGTAG+AGG | + | chr3_4:71437016-71437035 | Msa0519390:intron | 20.0% |
| !! | ATATTCTTACAAGGATTAAA+AGG | + | chr3_4:71437347-71437366 | Msa0519390:CDS | 20.0% |
| !! | CTCAAATAATAGTAACAATA+AGG | - | chr3_4:71437518-71437537 | None:intergenic | 20.0% |
| !!! | TTGTTTAGATACTTTTTCTT+GGG | - | chr3_4:71437997-71438016 | None:intergenic | 20.0% |
| !!! | ATTGTTTAGATACTTTTTCT+TGG | - | chr3_4:71437998-71438017 | None:intergenic | 20.0% |
| !!! | AAGAAAAAGTATCTAAACAA+TGG | + | chr3_4:71437997-71438016 | Msa0519390:CDS | 20.0% |
| !!! | CATTCTTACTATATTTTGTT+AGG | + | chr3_4:71438233-71438252 | Msa0519390:intron | 20.0% |
| !!! | TAACACTGATTTTGATGATT+CGG | - | chr3_4:71434540-71434559 | None:intergenic | 25.0% |
| ! | TTTACAAGAACGAAAACAAA+GGG | - | chr3_4:71434591-71434610 | None:intergenic | 25.0% |
| ! | AAAAAATGAATCGGAATTTG+AGG | - | chr3_4:71434639-71434658 | None:intergenic | 25.0% |
| ! | TTGATGCATTAGATGTAAAA+AGG | + | chr3_4:71434972-71434991 | Msa0519390:CDS | 25.0% |
| !! | ATATTGATGATTATTGAAGG+TGG | + | chr3_4:71435029-71435048 | Msa0519390:intron | 25.0% |
| !!! | GGTACAATTTTTTGAATAAC+AGG | + | chr3_4:71435232-71435251 | Msa0519390:intron | 25.0% |
| ! | TCAAATATGTCAATTCAAAC+AGG | + | chr3_4:71435481-71435500 | Msa0519390:intron | 25.0% |
| ! | TTAAAGACATACATTACACA+AGG | - | chr3_4:71435507-71435526 | None:intergenic | 25.0% |
| ! | AAAACAAATAAATCACAGCA+TGG | - | chr3_4:71435554-71435573 | None:intergenic | 25.0% |
| ! | TGTCTTGCTTCAATAAAAAA+GGG | + | chr3_4:71435602-71435621 | Msa0519390:CDS | 25.0% |
| ! | AATAAAAAAGGGATCAAAGA+AGG | + | chr3_4:71435613-71435632 | Msa0519390:CDS | 25.0% |
| ! | TTTAGTCAAAATCTTACCAA+TGG | - | chr3_4:71435672-71435691 | None:intergenic | 25.0% |
| ! | ATTAAATTTCATTCCATTGC+AGG | + | chr3_4:71435738-71435757 | Msa0519390:intron | 25.0% |
| ! | AAAAACATAAAAGGAGAACA+GGG | - | chr3_4:71435907-71435926 | None:intergenic | 25.0% |
| !!! | ATTTTAACAGATGCATACAT+TGG | - | chr3_4:71436077-71436096 | None:intergenic | 25.0% |
| ! | TAAATAAAGGGAAGACAAAT+GGG | - | chr3_4:71436180-71436199 | None:intergenic | 25.0% |
| ! | TAATTAAGTGATTTAAGCAG+TGG | - | chr3_4:71436474-71436493 | None:intergenic | 25.0% |
| !! | TTGATCAATTTGAAACTGTT+TGG | + | chr3_4:71436561-71436580 | Msa0519390:intron | 25.0% |
| ! | AGCAACAACAAAATATAAGT+GGG | - | chr3_4:71436785-71436804 | None:intergenic | 25.0% |
| !! | TAATTTAAGGTTTAGAGTCT+TGG | + | chr3_4:71436840-71436859 | Msa0519390:intron | 25.0% |
| ! | AATTTCACACTTATTAAGGA+TGG | - | chr3_4:71436995-71437014 | None:intergenic | 25.0% |
| ! | TACAAATCTATATGTAGGAT+AGG | - | chr3_4:71437095-71437114 | None:intergenic | 25.0% |
| ! | AGGAATACAAATCTATATGT+AGG | - | chr3_4:71437100-71437119 | None:intergenic | 25.0% |
| ! | GCATGGAAAATAAAATCAAT+AGG | - | chr3_4:71437153-71437172 | None:intergenic | 25.0% |
| ! | GAAAGTTACATATTCTTACA+AGG | + | chr3_4:71437338-71437357 | Msa0519390:CDS | 25.0% |
| !!! | AGATATCTTGGATTTTTTTG+AGG | + | chr3_4:71437463-71437482 | Msa0519390:CDS | 25.0% |
| !!! | TTTGTTCCTTTTAATTTGAC+TGG | + | chr3_4:71438377-71438396 | Msa0519390:intron | 25.0% |
| ! | AGCTGTCAAAAAATAAAGTA+GGG | - | chr3_4:71438630-71438649 | None:intergenic | 25.0% |
| ! | TAGCTGTCAAAAAATAAAGT+AGG | - | chr3_4:71438631-71438650 | None:intergenic | 25.0% |
| !! | AACCTAAATTGATTTACTTG+TGG | + | chr3_4:71438733-71438752 | Msa0519390:three_prime_UTR | 25.0% |
| ! | ATCCACAAGTAAATCAATTT+AGG | - | chr3_4:71438738-71438757 | None:intergenic | 25.0% |
| TCTTGAATAAGCTGTGTATT+AGG | - | chr3_4:71434434-71434453 | None:intergenic | 30.0% | |
| CAGCTTATTCAAGATTGTTT+CGG | + | chr3_4:71434440-71434459 | Msa0519390:five_prime_UTR | 30.0% | |
| ! | AGTAGTGTTCGAATTTTGAA+TGG | + | chr3_4:71434502-71434521 | Msa0519390:five_prime_UTR | 30.0% |
| GTTTACAAGAACGAAAACAA+AGG | - | chr3_4:71434592-71434611 | None:intergenic | 30.0% | |
| !! | GTGTTTGTTATGTTGTGTTT+AGG | + | chr3_4:71434803-71434822 | Msa0519390:intron | 30.0% |
| !! | ACTCTTGAAAGCATCAATTA+TGG | - | chr3_4:71435121-71435140 | None:intergenic | 30.0% |
| !!! | TTTTAGGTTTTTGTTTTGGC+TGG | + | chr3_4:71435211-71435230 | Msa0519390:intron | 30.0% |
| AAAAAAACTCACTAGACACT+AGG | + | chr3_4:71435291-71435310 | Msa0519390:intron | 30.0% | |
| AAAAAACTCACTAGACACTA+GGG | + | chr3_4:71435292-71435311 | Msa0519390:intron | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr3_4:71435365-71435384 | Msa0519390:intron | 30.0% |
| CTGTCTTGCTTCAATAAAAA+AGG | + | chr3_4:71435601-71435620 | Msa0519390:CDS | 30.0% | |
| TAACAAGAGATTCATCCAAA+GGG | - | chr3_4:71435827-71435846 | None:intergenic | 30.0% | |
| CAAAAACATAAAAGGAGAAC+AGG | - | chr3_4:71435908-71435927 | None:intergenic | 30.0% | |
| !! | TCATTTTTGTGTATAGTTGC+TGG | + | chr3_4:71435952-71435971 | Msa0519390:intron | 30.0% |
| !! | TTGGCTATAATCACTTTTGT+TGG | + | chr3_4:71435980-71435999 | Msa0519390:CDS | 30.0% |
| !! | CTATAATCACTTTTGTTGGA+GGG | + | chr3_4:71435984-71436003 | Msa0519390:CDS | 30.0% |
| CATACATTGGAACCTAATTT+GGG | - | chr3_4:71436064-71436083 | None:intergenic | 30.0% | |
| AAATAAAGGGAAGACAAATG+GGG | - | chr3_4:71436179-71436198 | None:intergenic | 30.0% | |
| GTAAATAAAGGGAAGACAAA+TGG | - | chr3_4:71436181-71436200 | None:intergenic | 30.0% | |
| TGAAGCTGAATTCAAAACAT+TGG | + | chr3_4:71436307-71436326 | Msa0519390:CDS | 30.0% | |
| TGAATTCAAAACATTGGCAA+AGG | + | chr3_4:71436313-71436332 | Msa0519390:CDS | 30.0% | |
| TATATGAGTTACATCGTCTA+TGG | - | chr3_4:71436506-71436525 | None:intergenic | 30.0% | |
| ! | TTTTTCATCCCTCTTTCTAT+GGG | - | chr3_4:71436675-71436694 | None:intergenic | 30.0% |
| !!! | TTTTTTCATCCCTCTTTCTA+TGG | - | chr3_4:71436676-71436695 | None:intergenic | 30.0% |
| TGGGATTACATTTCTCTTAA+GGG | - | chr3_4:71436766-71436785 | None:intergenic | 30.0% | |
| CAGCAACAACAAAATATAAG+TGG | - | chr3_4:71436786-71436805 | None:intergenic | 30.0% | |
| !! | TATTTTAGATTTACTCCCTC+CGG | + | chr3_4:71436890-71436909 | Msa0519390:intron | 30.0% |
| ATCTATATGTAGGATAGGTA+GGG | - | chr3_4:71437090-71437109 | None:intergenic | 30.0% | |
| AATCTATATGTAGGATAGGT+AGG | - | chr3_4:71437091-71437110 | None:intergenic | 30.0% | |
| GGAAAATAAAATCAATAGGC+TGG | - | chr3_4:71437149-71437168 | None:intergenic | 30.0% | |
| AGTTCAATAGCCTATTTATC+CGG | + | chr3_4:71437173-71437192 | Msa0519390:intron | 30.0% | |
| ! | TATTGATAAATTTTCGACCG+AGG | + | chr3_4:71437271-71437290 | Msa0519390:CDS | 30.0% |
| AAGAATATGTAACTTTCCTG+TGG | - | chr3_4:71437335-71437354 | None:intergenic | 30.0% | |
| TCAATGCAAAAATCTTTCTG+TGG | + | chr3_4:71437382-71437401 | Msa0519390:CDS | 30.0% | |
| CTGACTATTAAGATCTTTCT+TGG | - | chr3_4:71437429-71437448 | None:intergenic | 30.0% | |
| AGAAAGATCTTAATAGTCAG+AGG | + | chr3_4:71437429-71437448 | Msa0519390:CDS | 30.0% | |
| !!! | TGGATTTTTTTGAGGTATGT+TGG | + | chr3_4:71437471-71437490 | Msa0519390:intron | 30.0% |
| !!! | ATTTTTTTGAGGTATGTTGG+TGG | + | chr3_4:71437474-71437493 | Msa0519390:intron | 30.0% |
| ACTTATGAATAAGAGTCAGA+AGG | + | chr3_4:71437552-71437571 | Msa0519390:intron | 30.0% | |
| ! | TGATCTTTTATTGTCATGCT+AGG | + | chr3_4:71437584-71437603 | Msa0519390:intron | 30.0% |
| CCAATCTTCATTGAAATTTC+AGG | - | chr3_4:71437621-71437640 | None:intergenic | 30.0% | |
| CCTGAAATTTCAATGAAGAT+TGG | + | chr3_4:71437618-71437637 | Msa0519390:CDS | 30.0% | |
| GAAATTTCAATGAAGATTGG+TGG | + | chr3_4:71437621-71437640 | Msa0519390:CDS | 30.0% | |
| TTCATTAAACATATGCAGGT+TGG | + | chr3_4:71437824-71437843 | Msa0519390:intron | 30.0% | |
| AGAAACTAAAGACATCTTGT+AGG | - | chr3_4:71437972-71437991 | None:intergenic | 30.0% | |
| ! | CTAAATAAGTCTTGTGATGT+CGG | + | chr3_4:71438059-71438078 | Msa0519390:intron | 30.0% |
| !!! | ACCAAATTCAGTTTTGAACA+AGG | + | chr3_4:71438164-71438183 | Msa0519390:CDS | 30.0% |
| AAATGCTACTGTACATCATA+CGG | - | chr3_4:71438294-71438313 | None:intergenic | 30.0% | |
| AGGAATCCAGTCAAATTAAA+AGG | - | chr3_4:71438386-71438405 | None:intergenic | 30.0% | |
| TTCCTTATTGTTGAATCAAC+AGG | + | chr3_4:71438401-71438420 | Msa0519390:intron | 30.0% | |
| TCCTTATTGTTGAATCAACA+GGG | + | chr3_4:71438402-71438421 | Msa0519390:intron | 30.0% | |
| ! | CATCCATATTGACTGAATAA+TGG | - | chr3_4:71438440-71438459 | None:intergenic | 30.0% |
| ! | ATATGATGCAGTGCTTTATT+TGG | + | chr3_4:71438485-71438504 | Msa0519390:three_prime_UTR | 30.0% |
| !! | TATGATGCAGTGCTTTATTT+GGG | + | chr3_4:71438486-71438505 | Msa0519390:three_prime_UTR | 30.0% |
| TGGGGATTCAATTATTCATT+TGG | + | chr3_4:71438505-71438524 | Msa0519390:three_prime_UTR | 30.0% | |
| CGAAAACAAAGGGAATTGAA+AGG | - | chr3_4:71434581-71434600 | None:intergenic | 35.0% | |
| !! | TTTCTGGTGGTTTGTTGTTA+GGG | - | chr3_4:71434674-71434693 | None:intergenic | 35.0% |
| !! | ATTGTAACAGTTGTTTCTGG+TGG | - | chr3_4:71434687-71434706 | None:intergenic | 35.0% |
| ACCAGAAACAACTGTTACAA+TGG | + | chr3_4:71434686-71434705 | Msa0519390:exon | 35.0% | |
| CCAGAAACAACTGTTACAAT+GGG | + | chr3_4:71434687-71434706 | Msa0519390:exon | 35.0% | |
| ATGGGTAAACGTAAGTTTCT+AGG | + | chr3_4:71434705-71434724 | Msa0519390:intron | 35.0% | |
| TGGGTAAACGTAAGTTTCTA+GGG | + | chr3_4:71434706-71434725 | Msa0519390:intron | 35.0% | |
| AGCATCAATTATGGCTGAAA+AGG | - | chr3_4:71435112-71435131 | None:intergenic | 35.0% | |
| AGATGCAAGAGTTATCTCTT+TGG | - | chr3_4:71435645-71435664 | None:intergenic | 35.0% | |
| AACAAGAGATTCATCCAAAG+GGG | - | chr3_4:71435826-71435845 | None:intergenic | 35.0% | |
| CTAACAAGAGATTCATCCAA+AGG | - | chr3_4:71435828-71435847 | None:intergenic | 35.0% | |
| GAAGTAAAAATGTTTCGGTG+AGG | + | chr3_4:71435847-71435866 | Msa0519390:intron | 35.0% | |
| !! | GCTATAATCACTTTTGTTGG+AGG | + | chr3_4:71435983-71436002 | Msa0519390:CDS | 35.0% |
| GCATACATTGGAACCTAATT+TGG | - | chr3_4:71436065-71436084 | None:intergenic | 35.0% | |
| AAGCTGAAGCGGTAAATAAA+GGG | - | chr3_4:71436192-71436211 | None:intergenic | 35.0% | |
| TAAGCTGAAGCGGTAAATAA+AGG | - | chr3_4:71436193-71436212 | None:intergenic | 35.0% | |
| AAAGAGTGAATAAGCTGAAG+CGG | - | chr3_4:71436203-71436222 | None:intergenic | 35.0% | |
| CTTCAGCTTATTCACTCTTT+AGG | + | chr3_4:71436203-71436222 | Msa0519390:intron | 35.0% | |
| GCAGTTATTAATTGAGCAGA+AGG | - | chr3_4:71436243-71436262 | None:intergenic | 35.0% | |
| TGCTCAATTAATAACTGCTG+TGG | + | chr3_4:71436245-71436264 | Msa0519390:CDS | 35.0% | |
| GTCGATATTATACCTCTTAC+AGG | - | chr3_4:71436413-71436432 | None:intergenic | 35.0% | |
| ! | TGTTTGGAGTTTCACACAAT+AGG | + | chr3_4:71436577-71436596 | Msa0519390:intron | 35.0% |
| ! | GTTTGGAGTTTCACACAATA+GGG | + | chr3_4:71436578-71436597 | Msa0519390:intron | 35.0% |
| ! | GAATAACACTTCACGCATTT+TGG | + | chr3_4:71436644-71436663 | Msa0519390:intron | 35.0% |
| GTGGGATTACATTTCTCTTA+AGG | - | chr3_4:71436767-71436786 | None:intergenic | 35.0% | |
| GGCAATCTATTCTATAGACT+AGG | + | chr3_4:71436861-71436880 | Msa0519390:intron | 35.0% | |
| TCCTAATAATTTAGTCCGGA+GGG | - | chr3_4:71436908-71436927 | None:intergenic | 35.0% | |
| TTCCTAATAATTTAGTCCGG+AGG | - | chr3_4:71436909-71436928 | None:intergenic | 35.0% | |
| TAGATAAAATGTACTCCCTC+TGG | - | chr3_4:71437042-71437061 | None:intergenic | 35.0% | |
| TCTATATGTAGGATAGGTAG+GGG | - | chr3_4:71437089-71437108 | None:intergenic | 35.0% | |
| AAATAGGCTATTGAACTGCA+TGG | - | chr3_4:71437170-71437189 | None:intergenic | 35.0% | |
| ATCTAGAAGACCGGATAAAT+AGG | - | chr3_4:71437186-71437205 | None:intergenic | 35.0% | |
| GTCTTCTTTATCTAGAAGAC+CGG | - | chr3_4:71437195-71437214 | None:intergenic | 35.0% | |
| GTCTTCTAGATAAAGAAGAC+AGG | + | chr3_4:71437195-71437214 | Msa0519390:CDS | 35.0% | |
| !!! | CTGGCTCTAATTTTTGAGAT+TGG | + | chr3_4:71437245-71437264 | Msa0519390:CDS | 35.0% |
| ATGCAAAAATCTTTCTGTGG+AGG | + | chr3_4:71437385-71437404 | Msa0519390:CDS | 35.0% | |
| AATCCAAGATATCTCTGAAC+AGG | - | chr3_4:71437457-71437476 | None:intergenic | 35.0% | |
| ! | CTTTTATTGTCATGCTAGGA+TGG | + | chr3_4:71437588-71437607 | Msa0519390:intron | 35.0% |
| AATTTCATCAAGCACTTCCT+TGG | + | chr3_4:71437794-71437813 | Msa0519390:CDS | 35.0% | |
| AAGAGGGTCAGAAAAACAAA+AGG | - | chr3_4:71437923-71437942 | None:intergenic | 35.0% | |
| ATCAGCAGATAACAAGTGAA+AGG | - | chr3_4:71438108-71438127 | None:intergenic | 35.0% | |
| ! | GCCTTGTTCAAAACTGAATT+TGG | - | chr3_4:71438168-71438187 | None:intergenic | 35.0% |
| GATGAGACATGAGTTTAAGT+GGG | + | chr3_4:71438456-71438475 | Msa0519390:exon | 35.0% | |
| !! | ATGATGCAGTGCTTTATTTG+GGG | + | chr3_4:71438487-71438506 | Msa0519390:three_prime_UTR | 35.0% |
| !! | GTTTCTGGTGGTTTGTTGTT+AGG | - | chr3_4:71434675-71434694 | None:intergenic | 40.0% |
| ! | CCCATTGTAACAGTTGTTTC+TGG | - | chr3_4:71434690-71434709 | None:intergenic | 40.0% |
| GACACATTCATGAGATCAGA+TGG | - | chr3_4:71434902-71434921 | None:intergenic | 40.0% | |
| TCTGATCTCATGAATGTGTC+TGG | + | chr3_4:71434902-71434921 | Msa0519390:CDS | 40.0% | |
| !! | TTTATTTAAGGGGTACCACG+AGG | + | chr3_4:71435079-71435098 | Msa0519390:intron | 40.0% |
| !! | TTATTTAAGGGGTACCACGA+GGG | + | chr3_4:71435080-71435099 | Msa0519390:intron | 40.0% |
| !! | TCTACACTTCTGAGACTGTT+CGG | - | chr3_4:71435456-71435475 | None:intergenic | 40.0% |
| TCATTCCATTGCAGGTTGTT+TGG | + | chr3_4:71435746-71435765 | Msa0519390:intron | 40.0% | |
| ATCACTACATCCAACTGTCA+AGG | - | chr3_4:71435772-71435791 | None:intergenic | 40.0% | |
| TGAAGAATCTGTTACCCCTT+TGG | + | chr3_4:71435809-71435828 | Msa0519390:CDS | 40.0% | |
| AGAAGAAACAGAGCGATCAA+TGG | + | chr3_4:71436015-71436034 | Msa0519390:CDS | 40.0% | |
| AGCGATCAATGGACATAATG+TGG | + | chr3_4:71436026-71436045 | Msa0519390:CDS | 40.0% | |
| CATTGGAACCTAATTTGGGA+TGG | - | chr3_4:71436060-71436079 | None:intergenic | 40.0% | |
| ATTCAGCTTCAGATTGCCTA+CGG | - | chr3_4:71436298-71436317 | None:intergenic | 40.0% | |
| CTCAATGCCATAGATGATGT+AGG | + | chr3_4:71436447-71436466 | Msa0519390:intron | 40.0% | |
| ! | TGCGTGAAGTGTTATTCTAG+TGG | - | chr3_4:71436641-71436660 | None:intergenic | 40.0% |
| TTGGACTAACCCATAGAAAG+AGG | + | chr3_4:71436663-71436682 | Msa0519390:intron | 40.0% | |
| TGGACTAACCCATAGAAAGA+GGG | + | chr3_4:71436664-71436683 | Msa0519390:intron | 40.0% | |
| TCCCTCCGGACTAAATTATT+AGG | + | chr3_4:71436904-71436923 | Msa0519390:intron | 40.0% | |
| TTACTTATAGTAGAGGCCAG+AGG | + | chr3_4:71437023-71437042 | Msa0519390:intron | 40.0% | |
| TACTTATAGTAGAGGCCAGA+GGG | + | chr3_4:71437024-71437043 | Msa0519390:intron | 40.0% | |
| !! | TTCCTTGTGTAGCTGTTTCT+TGG | + | chr3_4:71437115-71437134 | Msa0519390:intron | 40.0% |
| AAATCAATAGGCTGGAACCA+AGG | - | chr3_4:71437141-71437160 | None:intergenic | 40.0% | |
| ATCACTTGCATTCTTAGCCT+CGG | - | chr3_4:71437291-71437310 | None:intergenic | 40.0% | |
| TCAAGAAGAGAGTAAACCAC+AGG | + | chr3_4:71437316-71437335 | Msa0519390:CDS | 40.0% | |
| AAAAATCTTTCTGTGGAGGC+TGG | + | chr3_4:71437389-71437408 | Msa0519390:CDS | 40.0% | |
| GAACCTGTTCAGAGATATCT+TGG | + | chr3_4:71437451-71437470 | Msa0519390:CDS | 40.0% | |
| GGGGTTCATTAAACATATGC+AGG | + | chr3_4:71437820-71437839 | Msa0519390:CDS | 40.0% | |
| ! | ACAAGCTTTTGACAGCAACT+AGG | - | chr3_4:71437881-71437900 | None:intergenic | 40.0% |
| AAGTCGTTGTCCTAATACCA+CGG | - | chr3_4:71437949-71437968 | None:intergenic | 40.0% | |
| AATGGCGAACATAGAATGTC+TGG | + | chr3_4:71438015-71438034 | Msa0519390:CDS | 40.0% | |
| ! | TAGAATGTCTGGTGGTGAAA+AGG | + | chr3_4:71438026-71438045 | Msa0519390:CDS | 40.0% |
| AGTGAAAGGAGAAAATCCAG+CGG | - | chr3_4:71438094-71438113 | None:intergenic | 40.0% | |
| ! | ACCTATTCTTTTACGTGCAG+AGG | + | chr3_4:71438130-71438149 | Msa0519390:intron | 40.0% |
| TCCTCTGCACGTAAAAGAAT+AGG | - | chr3_4:71438134-71438153 | None:intergenic | 40.0% | |
| !!! | ATTCAGTTTTGAACAAGGCC+AGG | + | chr3_4:71438169-71438188 | Msa0519390:CDS | 40.0% |
| !! | GCCCTGTTGATTCAACAATA+AGG | - | chr3_4:71438406-71438425 | None:intergenic | 40.0% |
| TATTGTTGAATCAACAGGGC+AGG | + | chr3_4:71438406-71438425 | Msa0519390:intron | 40.0% | |
| CGGCCATTATTCAGTCAATA+TGG | + | chr3_4:71438434-71438453 | Msa0519390:CDS | 40.0% | |
| GGATGAGACATGAGTTTAAG+TGG | + | chr3_4:71438455-71438474 | Msa0519390:exon | 40.0% | |
| !!! | TGAAAAGGCATTTTCCCTCG+TGG | - | chr3_4:71435097-71435116 | None:intergenic | 45.0% |
| !! | CTAGACACTAGGGCATTGTT+TGG | + | chr3_4:71435302-71435321 | Msa0519390:intron | 45.0% |
| !! | CTACACTTCTGAGACTGTTC+GGG | - | chr3_4:71435455-71435474 | None:intergenic | 45.0% |
| ACTCTTGCATCTCAAGCCAT+TGG | + | chr3_4:71435653-71435672 | Msa0519390:CDS | 45.0% | |
| TGTATAGTTGCTGGACTGCT+TGG | + | chr3_4:71435961-71435980 | Msa0519390:intron | 45.0% | |
| CGAGTGATCCATCCCAAATT+AGG | + | chr3_4:71436049-71436068 | Msa0519390:CDS | 45.0% | |
| ! | TCTTTTCTCCTCTCTACCGT+AGG | + | chr3_4:71436279-71436298 | Msa0519390:CDS | 45.0% |
| ! | CCTCTTACAGGAAGCATGAA+TGG | - | chr3_4:71436401-71436420 | None:intergenic | 45.0% |
| CCATTCATGCTTCCTGTAAG+AGG | + | chr3_4:71436398-71436417 | Msa0519390:intron | 45.0% | |
| CAGTGGTCCTACATCATCTA+TGG | - | chr3_4:71436457-71436476 | None:intergenic | 45.0% | |
| GAGTTACATCGTCTATGGAC+TGG | - | chr3_4:71436501-71436520 | None:intergenic | 45.0% | |
| AGGTCAGTAAGAATTGCTGC+TGG | + | chr3_4:71437215-71437234 | Msa0519390:CDS | 45.0% | |
| ATTCTCTACAGACATCGTCG+TGG | + | chr3_4:71437646-71437665 | Msa0519390:CDS | 45.0% | |
| GTCGTGGTCTCAAATGATAC+AGG | + | chr3_4:71437662-71437681 | Msa0519390:CDS | 45.0% | |
| TTCATCAAGCACTTCCTTGG+AGG | + | chr3_4:71437797-71437816 | Msa0519390:CDS | 45.0% | |
| TCATCAAGCACTTCCTTGGA+GGG | + | chr3_4:71437798-71437817 | Msa0519390:CDS | 45.0% | |
| ! | TAAGTCTTGTGATGTCGGTG+AGG | + | chr3_4:71438064-71438083 | Msa0519390:intron | 45.0% |
| CTTATTGAGTAACTGGGTCC+TGG | - | chr3_4:71438190-71438209 | None:intergenic | 45.0% | |
| CCGCTGCTTATTGAGTAACT+GGG | - | chr3_4:71438196-71438215 | None:intergenic | 45.0% | |
| CCCAGTTACTCAATAAGCAG+CGG | + | chr3_4:71438193-71438212 | Msa0519390:CDS | 45.0% | |
| ACCGCTGCTTATTGAGTAAC+TGG | - | chr3_4:71438197-71438216 | None:intergenic | 45.0% | |
| TAAGCAGCGGTTACAATCTG+AGG | + | chr3_4:71438206-71438225 | Msa0519390:CDS | 45.0% | |
| GCATAAATGACAGCGAAGCA+AGG | - | chr3_4:71438320-71438339 | None:intergenic | 45.0% | |
| AATCAACAGGGCAGGAACTT+CGG | + | chr3_4:71438414-71438433 | Msa0519390:intron | 45.0% | |
| CGAAGTAGATTCGCGTACTA+CGG | + | chr3_4:71438590-71438609 | Msa0519390:three_prime_UTR | 45.0% | |
| CAAGGCCAAACAACCTGCAA+TGG | - | chr3_4:71435754-71435773 | None:intergenic | 50.0% | |
| !! | GGTTGTTTGGCCTTGACAGT+TGG | + | chr3_4:71435759-71435778 | Msa0519390:intron | 50.0% |
| TAACTGCTGTGGTGTCTGCA+TGG | + | chr3_4:71436256-71436275 | Msa0519390:CDS | 50.0% | |
| TCAGATTGCCTACGGTAGAG+AGG | - | chr3_4:71436290-71436309 | None:intergenic | 50.0% | |
| GGCCAAGAAACAGCTACACA+AGG | - | chr3_4:71437120-71437139 | None:intergenic | 50.0% | |
| !! | GTGTAGCTGTTTCTTGGCCT+TGG | + | chr3_4:71437121-71437140 | Msa0519390:intron | 50.0% |
| AATTGCTGCTGGTGAAGCAC+TGG | + | chr3_4:71437226-71437245 | Msa0519390:CDS | 50.0% | |
| AATCTTTCTGTGGAGGCTGG+TGG | + | chr3_4:71437392-71437411 | Msa0519390:CDS | 50.0% | |
| CATCAAGCACTTCCTTGGAG+GGG | + | chr3_4:71437799-71437818 | Msa0519390:CDS | 50.0% | |
| ATCAAGCACTTCCTTGGAGG+GGG | + | chr3_4:71437800-71437819 | Msa0519390:CDS | 50.0% | |
| GTTTAATGAACCCCCCTCCA+AGG | - | chr3_4:71437814-71437833 | None:intergenic | 50.0% | |
| CCTAATACCACGGAGGAAGA+GGG | - | chr3_4:71437939-71437958 | None:intergenic | 50.0% | |
| TCCTAATACCACGGAGGAAG+AGG | - | chr3_4:71437940-71437959 | None:intergenic | 50.0% | |
| TCGTTGTCCTAATACCACGG+AGG | - | chr3_4:71437946-71437965 | None:intergenic | 50.0% | |
| GGCGAACATAGAATGTCTGG+TGG | + | chr3_4:71438018-71438037 | Msa0519390:CDS | 50.0% | |
| CCAGACAACACAGCAATCAG+CGG | - | chr3_4:71438548-71438567 | None:intergenic | 50.0% | |
| TCTGTGGAGGCTGGTGGAAA+AGG | + | chr3_4:71437398-71437417 | Msa0519390:CDS | 55.0% | |
| TCAAGCACTTCCTTGGAGGG+GGG | + | chr3_4:71437801-71437820 | Msa0519390:CDS | 55.0% | |
| TTTCTGACCCTCTTCCTCCG+TGG | + | chr3_4:71437929-71437948 | Msa0519390:intron | 55.0% | |
| CCCTCTTCCTCCGTGGTATT+AGG | + | chr3_4:71437936-71437955 | Msa0519390:intron | 55.0% | |
| ! | CCGCTGATTGCTGTGTTGTC+TGG | + | chr3_4:71438545-71438564 | Msa0519390:three_prime_UTR | 55.0% |
| ATGTCGGTGAGGACTTCCGC+TGG | + | chr3_4:71438075-71438094 | Msa0519390:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 71434402 | 71438787 | 71434402 | ID=Msa0519390;Name=Msa0519390 |
| chr3_4 | mRNA | 71434402 | 71438787 | 71434402 | ID=Msa0519390-mRNA-1;Parent=Msa0519390;Name=Msa0519390-mRNA-1;_AED=0.13;_eAED=0.13;_QI=303|0.91|0.92|1|1|1|13|320|450 |
| chr3_4 | exon | 71434402 | 71434714 | 71434402 | ID=Msa0519390-mRNA-1:exon:19603;Parent=Msa0519390-mRNA-1 |
| chr3_4 | exon | 71434825 | 71434993 | 71434825 | ID=Msa0519390-mRNA-1:exon:19604;Parent=Msa0519390-mRNA-1 |
| chr3_4 | exon | 71435089 | 71435169 | 71435089 | ID=Msa0519390-mRNA-1:exon:19605;Parent=Msa0519390-mRNA-1 |
| chr3_4 | exon | 71435580 | 71435674 | 71435580 | ID=Msa0519390-mRNA-1:exon:19606;Parent=Msa0519390-mRNA-1 |
| chr3_4 | exon | 71435760 | 71435863 | 71435760 | ID=Msa0519390-mRNA-1:exon:19607;Parent=Msa0519390-mRNA-1 |
| chr3_4 | exon | 71435968 | 71436078 | 71435968 | ID=Msa0519390-mRNA-1:exon:19608;Parent=Msa0519390-mRNA-1 |
| chr3_4 | exon | 71436225 | 71436355 | 71436225 | ID=Msa0519390-mRNA-1:exon:19609;Parent=Msa0519390-mRNA-1 |
| chr3_4 | exon | 71437175 | 71437484 | 71437175 | ID=Msa0519390-mRNA-1:exon:19610;Parent=Msa0519390-mRNA-1 |
| chr3_4 | exon | 71437606 | 71437683 | 71437606 | ID=Msa0519390-mRNA-1:exon:19611;Parent=Msa0519390-mRNA-1 |
| chr3_4 | exon | 71437791 | 71437841 | 71437791 | ID=Msa0519390-mRNA-1:exon:19612;Parent=Msa0519390-mRNA-1 |
| chr3_4 | exon | 71437958 | 71438047 | 71437958 | ID=Msa0519390-mRNA-1:exon:19613;Parent=Msa0519390-mRNA-1 |
| chr3_4 | exon | 71438150 | 71438227 | 71438150 | ID=Msa0519390-mRNA-1:exon:19614;Parent=Msa0519390-mRNA-1 |
| chr3_4 | exon | 71438423 | 71438787 | 71438423 | ID=Msa0519390-mRNA-1:exon:19615;Parent=Msa0519390-mRNA-1 |
| chr3_4 | five_prime_UTR | 71434402 | 71434704 | 71434402 | ID=Msa0519390-mRNA-1:five_prime_utr;Parent=Msa0519390-mRNA-1 |
| chr3_4 | CDS | 71434705 | 71434714 | 71434705 | ID=Msa0519390-mRNA-1:cds;Parent=Msa0519390-mRNA-1 |
| chr3_4 | CDS | 71434825 | 71434993 | 71434825 | ID=Msa0519390-mRNA-1:cds;Parent=Msa0519390-mRNA-1 |
| chr3_4 | CDS | 71435089 | 71435169 | 71435089 | ID=Msa0519390-mRNA-1:cds;Parent=Msa0519390-mRNA-1 |
| chr3_4 | CDS | 71435580 | 71435674 | 71435580 | ID=Msa0519390-mRNA-1:cds;Parent=Msa0519390-mRNA-1 |
| chr3_4 | CDS | 71435760 | 71435863 | 71435760 | ID=Msa0519390-mRNA-1:cds;Parent=Msa0519390-mRNA-1 |
| chr3_4 | CDS | 71435968 | 71436078 | 71435968 | ID=Msa0519390-mRNA-1:cds;Parent=Msa0519390-mRNA-1 |
| chr3_4 | CDS | 71436225 | 71436355 | 71436225 | ID=Msa0519390-mRNA-1:cds;Parent=Msa0519390-mRNA-1 |
| chr3_4 | CDS | 71437175 | 71437484 | 71437175 | ID=Msa0519390-mRNA-1:cds;Parent=Msa0519390-mRNA-1 |
| chr3_4 | CDS | 71437606 | 71437683 | 71437606 | ID=Msa0519390-mRNA-1:cds;Parent=Msa0519390-mRNA-1 |
| chr3_4 | CDS | 71437791 | 71437841 | 71437791 | ID=Msa0519390-mRNA-1:cds;Parent=Msa0519390-mRNA-1 |
| chr3_4 | CDS | 71437958 | 71438047 | 71437958 | ID=Msa0519390-mRNA-1:cds;Parent=Msa0519390-mRNA-1 |
| chr3_4 | CDS | 71438150 | 71438227 | 71438150 | ID=Msa0519390-mRNA-1:cds;Parent=Msa0519390-mRNA-1 |
| chr3_4 | CDS | 71438423 | 71438467 | 71438423 | ID=Msa0519390-mRNA-1:cds;Parent=Msa0519390-mRNA-1 |
| chr3_4 | three_prime_UTR | 71438468 | 71438787 | 71438468 | ID=Msa0519390-mRNA-1:three_prime_utr;Parent=Msa0519390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
