AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0732380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0732380 MtrunA17_Chr5g0437621 97.088 1305 37 1 39 1342 1 1305 0.0 2635
Msa0732380 MtrunA17_Chr3g0114161 55.900 1322 464 25 48 1340 16 1247 0.0 1362
Msa0732380 MtrunA17_Chr7g0224051 62.857 875 291 15 477 1341 267 1117 0.0 1073
Msa0732380 MtrunA17_Chr7g0224051 47.273 275 118 6 96 358 12 271 9.32e-64 238
Msa0732380 MtrunA17_Chr1g0191141 58.653 861 321 16 486 1340 271 1102 0.0 962
Msa0732380 MtrunA17_Chr1g0191141 47.012 251 111 6 57 295 8 248 7.39e-56 212
Msa0732380 MtrunA17_Chr7g0233031 34.450 746 398 20 622 1329 542 1234 1.09e-109 375
Msa0732380 MtrunA17_Chr7g0233021 35.745 691 367 19 664 1321 567 1213 6.41e-109 373
Msa0732380 MtrunA17_Chr7g0225791 32.552 725 426 16 621 1321 583 1268 1.45e-105 364
Msa0732380 MtrunA17_Chr4g0047081 32.895 684 406 14 664 1329 578 1226 2.49e-102 354
Msa0732380 MtrunA17_Chr7g0232971 32.349 745 434 20 622 1337 591 1294 7.89e-99 345
Msa0732380 MtrunA17_Chr7g0232991 31.669 641 373 14 723 1329 39 648 1.42e-88 302
Msa0732380 MtrunA17_Chr7g0224031 61.187 219 78 4 901 1117 25 238 6.00e-82 268
Msa0732380 MtrunA17_Chr2g0296421 30.243 701 399 22 608 1296 379 1001 4.34e-81 289
Msa0732380 MtrunA17_Chr8g0352361 30.715 713 386 23 605 1296 227 852 1.49e-79 282
Msa0732380 MtrunA17_Chr7g0233001 32.022 534 327 10 805 1327 1 509 8.39e-75 258
Msa0732380 MtrunA17_Chr7g0224021 65.094 106 35 1 735 840 10 113 2.08e-41 148
Msa0732380 MtrunA17_Chr2g0320781 33.913 230 147 2 1061 1289 15 240 6.60e-35 134
Msa0732380 MtrunA17_Chr8g0384531 24.570 582 331 19 743 1288 371 880 2.77e-32 137
Msa0732380 MtrunA17_Chr5g0393461 22.417 629 376 23 735 1326 163 716 3.22e-25 114
Msa0732380 MtrunA17_Chr1g0190391 29.762 252 143 10 738 982 564 788 3.27e-24 110
Msa0732380 MtrunA17_Chr4g0052341 24.772 549 317 22 786 1315 762 1233 8.02e-23 106
Msa0732380 MtrunA17_Chr1g0190381 38.621 145 81 2 1159 1295 205 349 2.24e-20 97.1
Msa0732380 MtrunA17_Chr1g0183681 23.164 531 333 19 786 1296 408 883 2.33e-20 98.2
Msa0732380 MtrunA17_Chr1g0205891 24.630 540 316 17 791 1322 398 854 1.05e-18 92.8
Msa0732380 MtrunA17_Chr5g0394201 24.444 540 318 17 791 1323 385 841 1.34e-18 92.4
Msa0732380 MtrunA17_Chr5g0403921 32.418 182 111 3 1144 1324 507 677 4.04e-15 80.9
Msa0732380 MtrunA17_Chr4g0017211 23.604 394 265 9 930 1297 1581 1964 5.87e-14 77.4
Msa0732380 MtrunA17_Chr4g0040301 32.374 139 88 2 1159 1297 397 529 1.18e-13 75.9
Msa0732380 MtrunA17_Chr3g0114111 86.111 36 5 0 1294 1329 1 36 2.29e-13 66.6
Msa0732380 MtrunA17_Chr5g0442141 33.846 130 79 2 1160 1288 951 1074 1.09e-12 73.2
Msa0732380 MtrunA17_Chr3g0095091 33.077 130 80 2 1160 1288 905 1028 1.31e-12 73.2
Msa0732380 MtrunA17_Chr4g0066651 27.461 193 128 3 1118 1303 1277 1464 5.01e-12 71.2
Msa0732380 MtrunA17_Chr2g0320751 40.230 87 51 1 1193 1279 896 981 9.39e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0732380 AT5G20420.1 52.769 1336 518 23 41 1340 2 1260 0.0 1276
Msa0732380 AT3G42670.2 65.990 788 250 8 561 1340 477 1254 0.0 1037
Msa0732380 AT3G42670.2 41.693 319 170 6 39 357 1 303 5.37e-62 233
Msa0732380 AT3G42670.3 65.990 788 250 8 561 1340 477 1254 0.0 1037
Msa0732380 AT3G42670.3 41.693 319 170 6 39 357 1 303 5.37e-62 233
Msa0732380 AT3G42670.1 65.990 788 250 8 561 1340 477 1254 0.0 1037
Msa0732380 AT3G42670.1 41.693 319 170 6 39 357 1 303 5.37e-62 233
Msa0732380 AT3G42670.4 65.693 787 256 6 561 1340 477 1256 0.0 1036
Msa0732380 AT3G42670.4 41.693 319 170 6 39 357 1 303 5.55e-62 233
Msa0732380 AT3G24340.1 32.466 730 424 17 622 1339 453 1125 7.00e-99 343
Msa0732380 AT1G05490.1 32.612 739 417 20 624 1325 690 1384 8.28e-98 344
Msa0732380 AT2G16390.2 30.496 705 404 22 605 1296 219 850 2.85e-78 278
Msa0732380 AT2G16390.1 30.496 705 404 22 605 1296 216 847 3.82e-78 278
Msa0732380 AT2G21450.3 30.382 655 372 17 662 1296 92 682 1.68e-74 264
Msa0732380 AT2G21450.1 30.122 654 375 17 662 1296 183 773 3.43e-74 265
Msa0732380 AT2G21450.2 30.122 654 375 17 662 1296 190 780 3.94e-74 265
Msa0732380 AT1G08600.4 27.090 598 340 23 755 1295 718 1276 1.96e-45 180
Msa0732380 AT1G08600.3 27.090 598 340 23 755 1295 718 1276 1.96e-45 180
Msa0732380 AT1G08600.2 27.090 598 340 23 755 1295 718 1276 1.96e-45 180
Msa0732380 AT1G08600.1 24.667 600 331 21 755 1295 718 1255 6.48e-38 156
Msa0732380 AT5G63950.1 24.399 582 325 22 746 1288 367 872 8.73e-27 119
Msa0732380 AT5G63950.2 24.740 578 311 23 746 1288 367 855 1.21e-26 119
Msa0732380 AT3G06010.1 24.908 542 314 21 791 1323 425 882 2.95e-18 91.7
Msa0732380 AT3G19210.1 34.247 146 88 2 1191 1336 579 716 3.96e-16 84.7
Msa0732380 AT3G19210.2 34.247 146 88 2 1191 1336 577 714 4.19e-16 84.7
Msa0732380 AT3G19210.3 34.247 146 88 2 1191 1336 579 716 4.97e-16 84.3
Msa0732380 AT1G03750.1 31.013 158 102 3 1138 1294 523 674 1.82e-14 79.3
Msa0732380 AT5G66750.1 31.818 176 113 3 1158 1332 540 709 1.10e-13 76.6
Msa0732380 AT2G13370.1 29.885 174 112 4 1133 1302 927 1094 6.45e-13 74.7
Msa0732380 AT2G13370.2 29.885 174 112 4 1133 1302 927 1094 6.45e-13 74.7
Msa0732380 AT2G13370.3 29.885 174 112 4 1133 1302 927 1094 6.45e-13 74.7
Msa0732380 AT2G28290.2 26.389 216 148 6 1118 1326 1042 1253 3.87e-12 72.0
Msa0732380 AT2G28290.3 26.389 216 148 6 1118 1326 1042 1253 4.42e-12 72.0
Msa0732380 AT2G28290.4 26.389 216 148 6 1118 1326 1042 1253 4.42e-12 72.0
Msa0732380 AT2G28290.6 26.389 216 148 6 1118 1326 1043 1254 4.42e-12 72.0
Msa0732380 AT2G28290.1 26.389 216 148 6 1118 1326 1042 1253 4.43e-12 72.0
Msa0732380 AT2G28290.5 26.389 216 148 6 1118 1326 1043 1254 4.74e-12 72.0
Msa0732380 AT5G44800.1 27.619 210 133 7 1118 1315 975 1177 7.67e-12 71.2
Msa0732380 AT3G57300.1 30.612 147 92 3 1158 1302 1222 1360 1.50e-11 70.1
Msa0732380 AT3G57300.4 30.612 147 92 3 1158 1302 1222 1360 1.50e-11 70.1
Msa0732380 AT3G57300.2 30.612 147 92 3 1158 1302 1255 1393 1.53e-11 70.1
Msa0732380 AT5G19310.2 33.577 137 84 1 1191 1327 475 604 1.86e-11 69.3
Msa0732380 AT5G19310.1 33.577 137 84 1 1191 1327 739 868 1.88e-11 69.7
Msa0732380 AT2G18760.3 36.458 96 60 1 1201 1296 840 934 5.37e-11 68.2
Msa0732380 AT2G18760.4 45.588 68 37 0 1229 1296 808 875 5.43e-11 68.2
Msa0732380 AT2G18760.1 45.588 68 37 0 1229 1296 808 875 5.43e-11 68.2
Msa0732380 AT2G18760.2 45.588 68 37 0 1229 1296 808 875 5.43e-11 68.2
Msa0732380 AT2G18760.7 45.588 68 37 0 1229 1296 808 875 5.43e-11 68.2
Msa0732380 AT2G18760.5 45.588 68 37 0 1229 1296 808 875 5.43e-11 68.2
Msa0732380 AT2G18760.6 45.588 68 37 0 1229 1296 808 875 5.43e-11 68.2

Find 253 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGATGGTGTATCAAATTT+TGG 0.090524 5_1:+44753293 Msa0732380:CDS
CACAAGTCTTCTTCCCCTTT+TGG 0.131162 5_1:-44753764 None:intergenic
GTTTGCACACCGAAAGTTTA+TGG 0.152463 5_1:+44755685 Msa0732380:CDS
GAATATTTCGAGAAGTATTT+TGG 0.184623 5_1:+44756478 Msa0732380:CDS
TTGGATTAACATCTCTGATA+TGG 0.220811 5_1:-44754678 None:intergenic
TACAAGTTTGATTTGAAAAT+AGG 0.232991 5_1:+44756355 Msa0732380:CDS
ACCAAACACCAAATTGCTTT+TGG 0.233126 5_1:+44753188 Msa0732380:CDS
CGATGATGTCAAGCATGTTT+TGG 0.250231 5_1:+44755568 Msa0732380:CDS
GAACTTTCCCAAAAGCAATT+TGG 0.266172 5_1:-44753196 None:intergenic
AATAGATTGGATGAAGAAAT+TGG 0.272442 5_1:+44754622 Msa0732380:CDS
CACAGGTAGTTTGGATGATA+TGG 0.277316 5_1:+44754079 Msa0732380:CDS
GCTGGCCTTCTGACATTTGA+TGG 0.281978 5_1:-44753691 None:intergenic
CCGACAAGCATTCGGTTTGC+TGG 0.293333 5_1:-44753709 None:intergenic
GAATTGAGAATATTGCTTTC+CGG 0.294300 5_1:+44755812 Msa0732380:CDS
GCATTTGAAGCAGTTATCTT+TGG 0.295235 5_1:+44752496 Msa0732380:intron
GGTTTCAAATGCAATTGTTT+TGG 0.298462 5_1:+44754558 Msa0732380:intron
CCCAAAAGCAATTTGGTGTT+TGG 0.300581 5_1:-44753189 None:intergenic
AGCAACTTCAGCAGCTGATT+TGG 0.303306 5_1:-44751868 None:intergenic
AACACTTCGTGAGGGAATTT+CGG 0.305259 5_1:-44755890 None:intergenic
TCGTCCTGGTCAGCAGAAAA+TGG 0.306006 5_1:+44756726 Msa0732380:CDS
GAATGCTTGTCGGGAGCTTC+TGG 0.310694 5_1:+44753719 Msa0732380:CDS
AACCTTGATTTGGTACTTCT+AGG 0.320287 5_1:-44755761 None:intergenic
AGGAAAGGAGTAGGCCAAAA+AGG 0.323674 5_1:+44755944 Msa0732380:CDS
CATTTCATCTACTACTGCTT+TGG 0.327480 5_1:-44753613 None:intergenic
TTTCTTTGGCGAAACGTTGC+AGG 0.327818 5_1:+44755248 Msa0732380:CDS
GAAACTCAAAAGCTTTCTTT+TGG 0.332440 5_1:-44755229 None:intergenic
CTTTATCAGACATTCGTATA+AGG 0.333588 5_1:+44752611 Msa0732380:CDS
AAGGAAGAGCACAGGTAGTT+TGG 0.335049 5_1:+44754070 Msa0732380:CDS
TGTAAGGATGTCAAAGTATT+CGG 0.335589 5_1:+44753072 Msa0732380:CDS
TTTCATTCTTCATGATCATA+TGG 0.351437 5_1:-44756939 None:intergenic
ATATGGATCTTGGAAATAGA+TGG 0.353135 5_1:+44754096 Msa0732380:CDS
AGTTCTTAATCGATCTTTCA+TGG 0.353313 5_1:+44753214 Msa0732380:CDS
TTCTCGTGATGAACCGATAT+CGG 0.354901 5_1:+44755148 Msa0732380:CDS
CTTTGAACGTGGGAAAATAA+TGG 0.359666 5_1:+44756549 Msa0732380:CDS
AGATTGAAGATGATATTCTA+AGG 0.360520 5_1:+44756884 Msa0732380:CDS
AATACAGTTGCTACTCTTCC+TGG 0.363378 5_1:+44755530 Msa0732380:CDS
TCGTAATGCTCAACGGCTAT+TGG 0.376136 5_1:-44753855 None:intergenic
TTCTTCCACTGGTCAGTGAT+AGG 0.381885 5_1:-44754305 None:intergenic
CATCACACTGCTTCTCCTCT+TGG 0.382571 5_1:-44755058 None:intergenic
AGTTTGGATGATATGGATCT+TGG 0.384784 5_1:+44754086 Msa0732380:CDS
GGAAAGCAATATTCTCAATT+CGG 0.386118 5_1:-44755810 None:intergenic
TAGCTACCTGAAGTTATTCC+CGG 0.388228 5_1:+44755379 Msa0732380:CDS
TGAATCAAGTACACCGGTAT+AGG 0.394727 5_1:-44755476 None:intergenic
CTTCTAGCAACGTTGCCGTT+TGG 0.395047 5_1:-44753879 None:intergenic
TACTTCGCAGTATAGTCATT+TGG 0.402392 5_1:+44753926 Msa0732380:CDS
ATTCTGCTTGAACACCCTAT+AGG 0.408396 5_1:-44755510 None:intergenic
TTGTGTTACATTTCTTCCAC+TGG 0.408645 5_1:-44754316 None:intergenic
GCCGCAGAGCAGTCCGGAAA+AGG 0.412132 5_1:+44753665 Msa0732380:CDS
CAGAATCTCATGCTGTATAT+CGG 0.414243 5_1:-44756179 None:intergenic
CAGCAAACCGAATGCTTGTC+GGG 0.422319 5_1:+44753710 Msa0732380:CDS
AGCACACATATGTCGATTCC+TGG 0.428297 5_1:-44752676 None:intergenic
TGGCTGTACATGCCTGCGTT+TGG 0.429276 5_1:-44753511 None:intergenic
GATTCGGCTTCAATTAGCTC+TGG 0.431074 5_1:-44755281 None:intergenic
TGCTCCTGTTTCTTACGTCC+AGG 0.431955 5_1:+44752658 Msa0732380:CDS
ACACTTGAGCCATAAACTTT+CGG 0.433248 5_1:-44755694 None:intergenic
AGATGATATTCTAAGGGAAA+TGG 0.434151 5_1:+44756891 Msa0732380:CDS
TCATGGTCGTAGAACCTATA+GGG 0.434888 5_1:+44755496 Msa0732380:CDS
ACTCTTTCCAAGTGGTTCTT+CGG 0.435241 5_1:-44756798 None:intergenic
GGTTTATGTTTATCAGCTCT+TGG 0.436984 5_1:+44756747 Msa0732380:CDS
GTTTATCAGCTCTTGGTGAC+AGG 0.443817 5_1:+44756754 Msa0732380:CDS
AGAAATGAGAACTCTTTGTA+AGG 0.443918 5_1:+44753056 Msa0732380:CDS
ATACCGGTGTACTTGATTCA+TGG 0.445701 5_1:+44755479 Msa0732380:CDS
ACCTTGATTTGGTACTTCTA+GGG 0.446221 5_1:-44755760 None:intergenic
TTTATCGATGTTTATGAAGC+AGG 0.449793 5_1:+44756103 Msa0732380:CDS
GGGAGCTTCTGGTGTACAAT+AGG 0.449977 5_1:+44753730 Msa0732380:CDS
CCGGACTGCTCTGCGGCAAA+CGG 0.450320 5_1:-44753659 None:intergenic
GAATTAATGACCAAACGCTT+TGG 0.451444 5_1:-44755178 None:intergenic
AGATAATCACCATATGGTTA+TGG 0.453918 5_1:+44752579 Msa0732380:CDS
ATCATCTTCATCATCCTTGG+TGG 0.454382 5_1:-44755099 None:intergenic
CGGAAGAAAACCAAAGCGTT+TGG 0.455256 5_1:+44755168 Msa0732380:CDS
AGGAAAATTGACTCTAATGT+TGG 0.456402 5_1:+44756031 Msa0732380:CDS
GAAAATAATGGATAAATTTG+AGG 0.459943 5_1:+44756561 Msa0732380:CDS
ACCCTAAATACAAGAGGAAA+AGG 0.460092 5_1:+44755924 Msa0732380:CDS
TCATCATCTTATAATGTTGA+CGG 0.460428 5_1:+44753477 Msa0732380:CDS
GGAAGTTCTGATGGTTTACC+AGG 0.461190 5_1:+44756124 Msa0732380:CDS
GATTCCTGGACGTAAGAAAC+AGG 0.465143 5_1:-44752662 None:intergenic
TATTCTTGAAATAAGCGAAC+AGG 0.465250 5_1:-44756460 None:intergenic
TTGGATGTTTCTATCCTGAC+AGG 0.466403 5_1:-44753594 None:intergenic
CTTGACATCATCGGTAGGCT+TGG 0.467522 5_1:-44755558 None:intergenic
GTTGGAGAGGAAAGAATTCA+AGG 0.467850 5_1:+44756049 Msa0732380:CDS
ACACGAGCACTCTGAGCCAT+GGG 0.470862 5_1:-44752989 None:intergenic
TCTTCCCCGGGAATAACTTC+AGG 0.477453 5_1:-44755385 None:intergenic
GAGGGAAAGTCCTGGACTCT+TGG 0.479228 5_1:+44755718 Msa0732380:CDS
ACATCCGAGTGTTCTAATCA+TGG 0.479550 5_1:+44755622 Msa0732380:CDS
GTCATCATCTTCATCATCCT+TGG 0.479586 5_1:-44755102 None:intergenic
TTGTGGCGGTGTTGATCAAA+AGG 0.480329 5_1:+44753782 Msa0732380:CDS
GATGAAGCCTTGACTGTAAG+TGG 0.480738 5_1:+44751834 Msa0732380:CDS
CCGCAGAGCAGTCCGGAAAA+GGG 0.482980 5_1:+44753666 Msa0732380:CDS
CACTTGGATCAATACATCCT+TGG 0.483200 5_1:+44756266 Msa0732380:CDS
TTTCACAGATAATCACCATA+TGG 0.483667 5_1:+44752573 Msa0732380:CDS
TAGGAGGGCTAAAACCCAAA+AGG 0.484813 5_1:+44753749 Msa0732380:CDS
AGAAGCTCCCGACAAGCATT+CGG 0.485361 5_1:-44753717 None:intergenic
ACGTGCATGATCAGCTCTCT+TGG 0.486701 5_1:-44753433 None:intergenic
CACCTTTGTCCATAACCATA+TGG 0.489824 5_1:-44752588 None:intergenic
GAGTTCATAAAAGTTAAATC+AGG 0.490264 5_1:+44752535 Msa0732380:CDS
TTCATGGTCGTAGAACCTAT+AGG 0.495823 5_1:+44755495 Msa0732380:CDS
AGGAGGGCTAAAACCCAAAA+GGG 0.498084 5_1:+44753750 Msa0732380:CDS
AAACAATGATGAACAGAAAG+AGG 0.499384 5_1:+44751913 Msa0732380:CDS
AGCTGTCAAACTAATTCCTT+CGG 0.501364 5_1:-44756632 None:intergenic
TTGACATCATCGGTAGGCTT+GGG 0.501969 5_1:-44755557 None:intergenic
TTAGAAACATGCCACCTGTC+AGG 0.502705 5_1:+44753580 Msa0732380:CDS
AAGCAGTTATCTTTGGCTCA+TGG 0.503439 5_1:+44752503 Msa0732380:CDS
TTCAAAGAGCTCGAGTTCCC+CGG 0.503714 5_1:-44756533 None:intergenic
ATTGGATCAGCATCTTGATC+AGG 0.504734 5_1:-44753837 None:intergenic
ATTGCACGTGCGTTTCGTCC+TGG 0.505656 5_1:+44756712 Msa0732380:CDS
TGGATTAACATCTCTGATAT+GGG 0.506421 5_1:-44754677 None:intergenic
TATGATCATGAAGAATGAAA+AGG 0.508729 5_1:+44756942 Msa0732380:CDS
ATCCTCTCCATGAGAAATCT+CGG 0.510077 5_1:-44754366 None:intergenic
GACACGAGCACTCTGAGCCA+TGG 0.510084 5_1:-44752990 None:intergenic
TGGATCAATACATCCTTGGC+TGG 0.513481 5_1:+44756270 Msa0732380:CDS
CCAGCAAACCGAATGCTTGT+CGG 0.515745 5_1:+44753709 Msa0732380:CDS
TTGTGAACATGATAATAGAT+TGG 0.516132 5_1:+44754609 Msa0732380:CDS
GCAATATTTGATCGAGTCAC+GGG 0.516637 5_1:+44755979 Msa0732380:CDS
GCTCTTGGTGACAGGTTCGT+TGG 0.516936 5_1:+44756762 Msa0732380:CDS
ATCAAAAGCTCTAACTCGAG+AGG 0.518196 5_1:-44756241 None:intergenic
TCTTGACAACACGGTAGATA+AGG 0.519104 5_1:-44756402 None:intergenic
GAACTAGAGGTCTCTTCCCC+GGG 0.519512 5_1:-44755397 None:intergenic
TCGGTAGGCTTGGGAACTCC+AGG 0.523809 5_1:-44755548 None:intergenic
CAAGTGGGAGATTCCTATAC+CGG 0.524870 5_1:+44755463 Msa0732380:CDS
AAGAAATGTAACACAACAAA+CGG 0.524918 5_1:+44754323 Msa0732380:CDS
CCGTTTGCCGCAGAGCAGTC+CGG 0.525321 5_1:+44753659 Msa0732380:CDS
ATGGATAAATTTGAGGAGCC+TGG 0.525717 5_1:+44756568 Msa0732380:CDS
CTTTGGCTCATGGCATCCTG+TGG 0.526654 5_1:+44752513 Msa0732380:CDS
AGCGAACAGGCGCAATGTTG+TGG 0.527089 5_1:-44756447 None:intergenic
AGCTTCTGGTGTACAATAGG+AGG 0.528440 5_1:+44753733 Msa0732380:CDS
AGCTACCTGAAGTTATTCCC+GGG 0.528782 5_1:+44755380 Msa0732380:CDS
GTTTATGGCTCAAGTGTTGA+GGG 0.528816 5_1:+44755700 Msa0732380:CDS
CAACGAGCCGGTGATTCAGT+TGG 0.530244 5_1:+44752709 Msa0732380:CDS
CTTGGTGACAGGTTCGTTGG+AGG 0.531022 5_1:+44756765 Msa0732380:CDS
AGAACTAGAGGTCTCTTCCC+CGG 0.532388 5_1:-44755398 None:intergenic
TCAATCACAGCTTGTGCCGA+AGG 0.534805 5_1:+44756616 Msa0732380:CDS
AGTTTATGGCTCAAGTGTTG+AGG 0.535176 5_1:+44755699 Msa0732380:CDS
TATGAAGCAGGAAGTTCTGA+TGG 0.535273 5_1:+44756115 Msa0732380:CDS
ATAGGAGGTTCTTCTATGAC+AGG 0.535482 5_1:-44754287 None:intergenic
AGTGTATAAATTTGTAAACC+TGG 0.536546 5_1:-44756142 None:intergenic
ATGTTGAGAAATGTGACAAA+TGG 0.537792 5_1:+44756079 Msa0732380:CDS
TCAACTCATTTAAGAAATAA+CGG 0.539258 5_1:+44754170 Msa0732380:CDS
TCATCTTCATCATCCTTGGT+GGG 0.540466 5_1:-44755098 None:intergenic
CGCAATATTTGATCGAGTCA+CGG 0.541175 5_1:+44755978 Msa0732380:CDS
GGACTCTTGGTACTTGATGA+AGG 0.541459 5_1:+44755731 Msa0732380:CDS
TATTCTAAGGGAAATGGTTG+AGG 0.543285 5_1:+44756897 Msa0732380:CDS
GTGGAAACCGAGATTTCTCA+TGG 0.543372 5_1:+44754359 Msa0732380:CDS
CGGTTAGTACTAAAACTTCA+CGG 0.543504 5_1:-44756513 None:intergenic
TAATATTCTGTAAATACGAA+TGG 0.543929 5_1:-44754256 None:intergenic
ATACTTCAACACTCTATGCT+TGG 0.544106 5_1:+44755862 Msa0732380:CDS
TTCCACTGGTCAGTGATAGG+AGG 0.547139 5_1:-44754302 None:intergenic
GAAGTTAAAGAGTTGGATGT+TGG 0.547524 5_1:+44753552 Msa0732380:CDS
GAAATTTCCACTTACAGTCA+AGG 0.547958 5_1:-44751841 None:intergenic
GACAGGTGGCATGTTTCTAA+AGG 0.548270 5_1:-44753577 None:intergenic
TGGCTGCGAAGTTAAAGAGT+TGG 0.548459 5_1:+44753545 Msa0732380:CDS
TATGGATCTTGGAAATAGAT+GGG 0.548949 5_1:+44754097 Msa0732380:CDS
CATCACGAGAAGTGTCGGTC+GGG 0.549470 5_1:-44755136 None:intergenic
TATGTTGAACAAGGTTCACT+TGG 0.550661 5_1:+44753030 Msa0732380:CDS
CTCGGATGAAGACCACCGAT+GGG 0.551911 5_1:-44753151 None:intergenic
CGGTTCATCACGAGAAGTGT+CGG 0.553602 5_1:-44755141 None:intergenic
TTTCAGCGAGGCGTTTGTCG+AGG 0.554070 5_1:+44756837 Msa0732380:CDS
CATCCGAGTGTTCTAATCAT+GGG 0.556634 5_1:+44755623 Msa0732380:CDS
TGTAACACAACAAACGGTGT+TGG 0.558100 5_1:+44754329 Msa0732380:CDS
ATATCTCATACTCCTGGAGC+CGG 0.558114 5_1:+44755326 Msa0732380:CDS
AGCGACATGTTTAAGTGCAG+TGG 0.558265 5_1:+44756214 Msa0732380:CDS
ACCCTAGAAGTACCAAATCA+AGG 0.558435 5_1:+44755759 Msa0732380:CDS
GATGTTTCTATCCTGACAGG+TGG 0.561215 5_1:-44753591 None:intergenic
TGTGTGATATCTCATACTCC+TGG 0.561503 5_1:+44755320 Msa0732380:CDS
TTCATGGTTAGTTGTTACAT+CGG 0.564104 5_1:+44753230 Msa0732380:CDS
GATCTTGGAAATAGATGGGA+AGG 0.564793 5_1:+44754101 Msa0732380:CDS
TCTTCTTAGATACAATCGCT+AGG 0.565118 5_1:+44756011 Msa0732380:CDS
TCGCAGCCAACGTAACGCTC+TGG 0.565753 5_1:-44753531 None:intergenic
CAAAACATGCTTGACATCAT+CGG 0.566712 5_1:-44755567 None:intergenic
CCGTGTTGTCAAGAACGAAA+AGG 0.566722 5_1:+44756411 Msa0732380:CDS
CAAGAGGAGAAGCAGTGTGA+TGG 0.568341 5_1:+44755059 Msa0732380:CDS
ATCGAAGACAGGATTTCATG+AGG 0.569999 5_1:+44754136 Msa0732380:CDS
AAACGGTGTTGGACAAAATG+TGG 0.570352 5_1:+44754340 Msa0732380:CDS
TTCTTTGGCGAAACGTTGCA+GGG 0.571447 5_1:+44755249 Msa0732380:CDS
ATAGCAACTTGAGAAACAAT+CGG 0.574210 5_1:-44753402 None:intergenic
TTCTCAGCTTGCCAACGAGA+AGG 0.574330 5_1:-44756862 None:intergenic
ATTTAAACCAACTGAATCAC+CGG 0.575389 5_1:-44752716 None:intergenic
CCTCGGATGAAGACCACCGA+TGG 0.578288 5_1:-44753152 None:intergenic
CACCATATGGTTATGGACAA+AGG 0.580592 5_1:+44752586 Msa0732380:CDS
GAAAGAACTTGAAGTGTCAC+TGG 0.581373 5_1:+44754421 Msa0732380:CDS
TCAGCATCTTGATCAGGAAG+AGG 0.582114 5_1:-44753831 None:intergenic
GATTGAAGATGATATTCTAA+GGG 0.582615 5_1:+44756885 Msa0732380:CDS
AACTCGAGCTCTTTGAACGT+GGG 0.583915 5_1:+44756539 Msa0732380:CDS
AAGAGGAAAAGGAAAGGAGT+AGG 0.584586 5_1:+44755935 Msa0732380:CDS
CTATCACCTCCTCAACGAGC+CGG 0.584875 5_1:+44752697 Msa0732380:CDS
TCATCAAGTACCAAGAGTCC+AGG 0.586811 5_1:-44755728 None:intergenic
CGGTACTAACATGCCATCGT+CGG 0.591646 5_1:-44753382 None:intergenic
CATGTGAAAATCAGCCCCAT+CGG 0.591882 5_1:+44753136 Msa0732380:CDS
AAACGGAACAAGAATGATAA+CGG 0.591966 5_1:-44753642 None:intergenic
AGTATCTTTGATACTCCACC+AGG 0.592133 5_1:-44756586 None:intergenic
AATGCTTTCAACACTTCGTG+AGG 0.592963 5_1:-44755899 None:intergenic
GAACTCGAGCTCTTTGAACG+TGG 0.594844 5_1:+44756538 Msa0732380:CDS
GGTATAAAGAATTTATCAAG+TGG 0.595054 5_1:+44755447 Msa0732380:CDS
AACCGAGATTTCTCATGGAG+AGG 0.595400 5_1:+44754364 Msa0732380:CDS
GAATCACCGGCTCGTTGAGG+AGG 0.595622 5_1:-44752703 None:intergenic
AAGCTGAAATGGATATGTTG+TGG 0.597378 5_1:+44754399 Msa0732380:CDS
TCTAAGGGAAATGGTTGAGG+AGG 0.597803 5_1:+44756900 Msa0732380:CDS
GTTTGGATCGTAATGCTCAA+CGG 0.598237 5_1:-44753862 None:intergenic
ATAAGTACCGAAGAACCACT+TGG 0.600109 5_1:+44756791 Msa0732380:CDS
AAGTTACAAAGGAAGAGCAC+AGG 0.600175 5_1:+44754062 Msa0732380:CDS
GGAAGAGGAATAATAGCAAG+TGG 0.600471 5_1:-44753816 None:intergenic
CAGACATTCGTATAAGGTCA+AGG 0.600511 5_1:+44752617 Msa0732380:CDS
ATTGACATCGTGAAGAAACA+TGG 0.600782 5_1:-44754025 None:intergenic
TCGAAGACAGGATTTCATGA+GGG 0.600969 5_1:+44754137 Msa0732380:CDS
GTGAAAATCAGCCCCATCGG+TGG 0.602877 5_1:+44753139 Msa0732380:CDS
TTGTCGAGGATCCTTCTCGT+TGG 0.606121 5_1:+44756851 Msa0732380:CDS
AATTGACTCTAATGTTGGAG+AGG 0.608578 5_1:+44756036 Msa0732380:CDS
GTTGAGCATTACGATCCAAA+CGG 0.610151 5_1:+44753864 Msa0732380:CDS
GAGTCTCATATTGATGTCAT+CGG 0.611926 5_1:+44753351 Msa0732380:CDS
TCATCACGAGAAGTGTCGGT+CGG 0.612178 5_1:-44755137 None:intergenic
CGACACCCACTCTTTCCAAG+TGG 0.614649 5_1:-44756806 None:intergenic
CCATCGGTGGTCTTCATCCG+AGG 0.614878 5_1:+44753152 Msa0732380:CDS
CATTAGACCCTAAATACAAG+AGG 0.615011 5_1:+44755918 Msa0732380:CDS
ATCGGATTCAAAACCGACGA+TGG 0.615258 5_1:+44753369 Msa0732380:CDS
GGGTGCCATCAAATGTCAGA+AGG 0.616154 5_1:+44753686 Msa0732380:CDS
CAAGTGTTGAGGGAAAGTCC+TGG 0.616594 5_1:+44755710 Msa0732380:CDS
TCAAAAGCTCTAACTCGAGA+GGG 0.618528 5_1:-44756240 None:intergenic
TTGGCTCTACTAAGTTACAA+AGG 0.618837 5_1:+44754051 Msa0732380:CDS
TGGTAATGAAGAGCAATCCT+CGG 0.619389 5_1:-44753169 None:intergenic
GAAGAACCACTTGGAAAGAG+TGG 0.620292 5_1:+44756800 Msa0732380:CDS
ATGCTTTCAACACTTCGTGA+GGG 0.623531 5_1:-44755898 None:intergenic
GGAATATACTGCTGTAGATG+TGG 0.625004 5_1:+44754643 Msa0732380:CDS
CATTTAAGAAATAACGGCGA+AGG 0.625072 5_1:+44754176 Msa0732380:CDS
AAATTCAGTGTGGCGCCAAG+AGG 0.625626 5_1:+44755043 Msa0732380:CDS
GTATAAAGAATTTATCAAGT+GGG 0.625662 5_1:+44755448 Msa0732380:CDS
ACTGAATCACCGGCTCGTTG+AGG 0.625719 5_1:-44752706 None:intergenic
AAGATCAGTAGAAAACAAGA+TGG 0.627489 5_1:+44753278 Msa0732380:CDS
TAGCCCATGATTAGAACACT+CGG 0.632210 5_1:-44755626 None:intergenic
GCTTCTGGTGTACAATAGGA+GGG 0.641634 5_1:+44753734 Msa0732380:CDS
AAGAACCACTTGGAAAGAGT+GGG 0.646979 5_1:+44756801 Msa0732380:CDS
AAATACAAGAGGAAAAGGAA+AGG 0.649041 5_1:+44755929 Msa0732380:CDS
TGGTTAATAATCCTAAACCA+AGG 0.650473 5_1:+44753946 Msa0732380:CDS
TAAAGACAGAACTTTAAATG+CGG 0.651133 5_1:+44754214 Msa0732380:CDS
GATAAATTTGAGGAGCCTGG+TGG 0.654281 5_1:+44756571 Msa0732380:CDS
ACATGCTTGACATCATCGGT+AGG 0.656056 5_1:-44755563 None:intergenic
CAAAAGGGGAAGAAGACTTG+TGG 0.658195 5_1:+44753765 Msa0732380:CDS
GCTACCTGAAGTTATTCCCG+GGG 0.659114 5_1:+44755381 Msa0732380:CDS
GCTTACGACGTTCCAAACGC+AGG 0.660746 5_1:+44753499 Msa0732380:CDS
TGCATCTCGTGTGATCATGT+TGG 0.662663 5_1:+44756654 Msa0732380:CDS
AAGTTGCTCATATACAACAT+TGG 0.665395 5_1:+44751883 Msa0732380:CDS
AAGGGGAAGAAGACTTGTGG+CGG 0.670203 5_1:+44753768 Msa0732380:CDS
GGAGGGCTAAAACCCAAAAG+GGG 0.676635 5_1:+44753751 Msa0732380:CDS
AACCTCCTATCACTGACCAG+TGG 0.680042 5_1:+44754300 Msa0732380:CDS
GTACAGCCAGAGCGTTACGT+TGG 0.681484 5_1:+44753525 Msa0732380:CDS
CGACCATGAATCAAGTACAC+CGG 0.682151 5_1:-44755482 None:intergenic
GATGACATCAATATGAGACT+CGG 0.684735 5_1:-44753349 None:intergenic
ATTAACATCTCTGATATGGG+TGG 0.685046 5_1:-44754674 None:intergenic
CACGAGCACTCTGAGCCATG+GGG 0.689089 5_1:-44752988 None:intergenic
ATGGATCAAACTCTTGTATG+CGG 0.695811 5_1:-44754237 None:intergenic
AGATAAAGAAGAGCCCACCA+AGG 0.706701 5_1:+44755085 Msa0732380:CDS
TCGGATGAAGACCACCGATG+GGG 0.711748 5_1:-44753150 None:intergenic
TCTATACAGAGAAAGCCCCA+TGG 0.713635 5_1:+44752973 Msa0732380:CDS
TGATCATGTTGGATTCCGAG+TGG 0.740440 5_1:+44756665 Msa0732380:CDS
GGCAGGTTGAAAATTCAGTG+TGG 0.744598 5_1:+44755033 Msa0732380:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATCTTTTATTATAGAAAA+AGG + chr5_1:44754972-44754991 Msa0732380:intron 10.0%
!!! TTTCTTTTTAATTATAGGTT+TGG + chr5_1:44752932-44752951 Msa0732380:intron 15.0%
!!! TTCTTTTTAATTATAGGTTT+GGG + chr5_1:44752933-44752952 Msa0732380:intron 15.0%
!! TTGAACAGAATAAATATCAA+TGG + chr5_1:44752024-44752043 Msa0732380:intron 20.0%
!!! AAAATTTTGAGGAAGTTAAT+AGG - chr5_1:44752465-44752484 None:intergenic 20.0%
!! TCAACTCATTTAAGAAATAA+CGG + chr5_1:44754170-44754189 Msa0732380:CDS 20.0%
!! TAATATTCTGTAAATACGAA+TGG - chr5_1:44754259-44754278 None:intergenic 20.0%
!!! TTTGAAACCTGATAAAATAA+TGG - chr5_1:44754547-44754566 None:intergenic 20.0%
!! TAAACTTGACTTACAAAAAT+TGG - chr5_1:44754700-44754719 None:intergenic 20.0%
!! AATAAGCTAAAAACATCTTA+TGG - chr5_1:44754885-44754904 None:intergenic 20.0%
!! GTATAAAGAATTTATCAAGT+GGG + chr5_1:44755448-44755467 Msa0732380:CDS 20.0%
!!! ATTATTTTGAAACAAAGTAC+CGG - chr5_1:44755834-44755853 None:intergenic 20.0%
!!! TTCTCAGAAATTTTTAACAA+AGG + chr5_1:44756309-44756328 Msa0732380:CDS 20.0%
!!! TACAAGTTTGATTTGAAAAT+AGG + chr5_1:44756355-44756374 Msa0732380:CDS 20.0%
!!! GAAAATAATGGATAAATTTG+AGG + chr5_1:44756561-44756580 Msa0732380:CDS 20.0%
! ATCAAAAAGAAAGAGGAAAA+AGG - chr5_1:44751981-44752000 None:intergenic 25.0%
! TCATTTGATCAAAAAGAAAG+AGG - chr5_1:44751988-44752007 None:intergenic 25.0%
! TCTGATTCTACAATACTAAA+AGG + chr5_1:44752059-44752078 Msa0732380:intron 25.0%
! AATAAGCTGAAAACAACTTA+TGG - chr5_1:44752191-44752210 None:intergenic 25.0%
! GAGTTCATAAAAGTTAAATC+AGG + chr5_1:44752535-44752554 Msa0732380:CDS 25.0%
! ATCTTAAAATGAACACTTAC+AGG - chr5_1:44752748-44752767 None:intergenic 25.0%
! CTGTTACAATTGTTACTATA+AGG - chr5_1:44752845-44752864 None:intergenic 25.0%
!! AAGATGGTGTATCAAATTTT+GGG + chr5_1:44753294-44753313 Msa0732380:CDS 25.0%
! TCATCATCTTATAATGTTGA+CGG + chr5_1:44753477-44753496 Msa0732380:CDS 25.0%
!! AACAAATTGATGTTTTTCCT+TGG - chr5_1:44753966-44753985 None:intergenic 25.0%
! ATAAAAAGAAAATCGAAGAC+AGG + chr5_1:44754125-44754144 Msa0732380:CDS 25.0%
! TAAAGACAGAACTTTAAATG+CGG + chr5_1:44754214-44754233 Msa0732380:CDS 25.0%
! AAGAAATGTAACACAACAAA+CGG + chr5_1:44754323-44754342 Msa0732380:CDS 25.0%
! AAAACAGAGCAAAAAACATA+AGG - chr5_1:44754506-44754525 None:intergenic 25.0%
!!! ATCAGTTCCATTATTTTATC+AGG + chr5_1:44754537-44754556 Msa0732380:intron 25.0%
! TTGTGAACATGATAATAGAT+TGG + chr5_1:44754609-44754628 Msa0732380:CDS 25.0%
! AATAGATTGGATGAAGAAAT+TGG + chr5_1:44754622-44754641 Msa0732380:CDS 25.0%
! TTTCTTTCATTCTTGTATTC+TGG + chr5_1:44754775-44754794 Msa0732380:intron 25.0%
! TATGATAATCTTGTTGGTAT+TGG + chr5_1:44755012-44755031 Msa0732380:intron 25.0%
! GGTATAAAGAATTTATCAAG+TGG + chr5_1:44755447-44755466 Msa0732380:CDS 25.0%
! AGTGTATAAATTTGTAAACC+TGG - chr5_1:44756145-44756164 None:intergenic 25.0%
!!! GAATATTTCGAGAAGTATTT+TGG + chr5_1:44756478-44756497 Msa0732380:CDS 25.0%
! AGATTGAAGATGATATTCTA+AGG + chr5_1:44756884-44756903 Msa0732380:CDS 25.0%
! GATTGAAGATGATATTCTAA+GGG + chr5_1:44756885-44756904 Msa0732380:CDS 25.0%
! TTTCATTCTTCATGATCATA+TGG - chr5_1:44756942-44756961 None:intergenic 25.0%
! TATGATCATGAAGAATGAAA+AGG + chr5_1:44756942-44756961 Msa0732380:CDS 25.0%
AAGTTGCTCATATACAACAT+TGG + chr5_1:44751883-44751902 Msa0732380:CDS 30.0%
AAACAATGATGAACAGAAAG+AGG + chr5_1:44751913-44751932 Msa0732380:CDS 30.0%
GATAGCTTATGAAAAGCTTA+TGG - chr5_1:44752215-44752234 None:intergenic 30.0%
! AAGCTTTTCATAAGCTATCT+TGG + chr5_1:44752216-44752235 Msa0732380:intron 30.0%
! TTAAGTTGTTTATCCAAGCA+CGG + chr5_1:44752353-44752372 Msa0732380:intron 30.0%
TAGATTAATAAATCCGTGCT+TGG - chr5_1:44752369-44752388 None:intergenic 30.0%
GCACGGATTTATTAATCTAT+AGG + chr5_1:44752370-44752389 Msa0732380:intron 30.0%
AGAATGTGATTGTATGATCA+TGG - chr5_1:44752420-44752439 None:intergenic 30.0%
! TGTTCAGAAGGAAAATTTTG+AGG - chr5_1:44752476-44752495 None:intergenic 30.0%
! TTAACTTTTATGAACTCCAC+AGG - chr5_1:44752532-44752551 None:intergenic 30.0%
TTTCACAGATAATCACCATA+TGG + chr5_1:44752573-44752592 Msa0732380:CDS 30.0%
AGATAATCACCATATGGTTA+TGG + chr5_1:44752579-44752598 Msa0732380:CDS 30.0%
CTTTATCAGACATTCGTATA+AGG + chr5_1:44752611-44752630 Msa0732380:CDS 30.0%
ATTTAAACCAACTGAATCAC+CGG - chr5_1:44752719-44752738 None:intergenic 30.0%
! GTCAACTTTTATGTTGAACA+AGG + chr5_1:44753021-44753040 Msa0732380:CDS 30.0%
AGAAATGAGAACTCTTTGTA+AGG + chr5_1:44753056-44753075 Msa0732380:CDS 30.0%
! TGTAAGGATGTCAAAGTATT+CGG + chr5_1:44753072-44753091 Msa0732380:CDS 30.0%
AGTTCTTAATCGATCTTTCA+TGG + chr5_1:44753214-44753233 Msa0732380:CDS 30.0%
! TTCATGGTTAGTTGTTACAT+CGG + chr5_1:44753230-44753249 Msa0732380:CDS 30.0%
AAGATCAGTAGAAAACAAGA+TGG + chr5_1:44753278-44753297 Msa0732380:CDS 30.0%
! CAAGATGGTGTATCAAATTT+TGG + chr5_1:44753293-44753312 Msa0732380:CDS 30.0%
ATAGCAACTTGAGAAACAAT+CGG - chr5_1:44753405-44753424 None:intergenic 30.0%
AAACGGAACAAGAATGATAA+CGG - chr5_1:44753645-44753664 None:intergenic 30.0%
TGGTTAATAATCCTAAACCA+AGG + chr5_1:44753946-44753965 Msa0732380:CDS 30.0%
! TTGATGTTTTTCCTTGGTTT+AGG - chr5_1:44753960-44753979 None:intergenic 30.0%
!!! TCTTCACGATGTCAATTTTT+TGG + chr5_1:44754032-44754051 Msa0732380:CDS 30.0%
ATATGGATCTTGGAAATAGA+TGG + chr5_1:44754096-44754115 Msa0732380:CDS 30.0%
TATGGATCTTGGAAATAGAT+GGG + chr5_1:44754097-44754116 Msa0732380:CDS 30.0%
TGATGTAGAAAAAGCTGAAA+TGG + chr5_1:44754388-44754407 Msa0732380:CDS 30.0%
AAGGAACTAAGGAAAAACAA+TGG - chr5_1:44754487-44754506 None:intergenic 30.0%
GCAAAAAACATAAGGAACTA+AGG - chr5_1:44754498-44754517 None:intergenic 30.0%
! TTTTTGCTCTGTTTTCTCTA+AGG + chr5_1:44754511-44754530 Msa0732380:intron 30.0%
! GGTTTCAAATGCAATTGTTT+TGG + chr5_1:44754558-44754577 Msa0732380:intron 30.0%
TGGATTAACATCTCTGATAT+GGG - chr5_1:44754680-44754699 None:intergenic 30.0%
TTGGATTAACATCTCTGATA+TGG - chr5_1:44754681-44754700 None:intergenic 30.0%
TTCTATACATTGCATCTAGA+TGG + chr5_1:44754799-44754818 Msa0732380:intron 30.0%
CACTTGTATGATAATCTTGT+TGG + chr5_1:44755006-44755025 Msa0732380:intron 30.0%
! GAAACTCAAAAGCTTTCTTT+TGG - chr5_1:44755232-44755251 None:intergenic 30.0%
!!! AGAAAGCTTTTGAGTTTCTT+TGG + chr5_1:44755234-44755253 Msa0732380:CDS 30.0%
! GATGATGAGAAAAGTTTTTC+CGG - chr5_1:44755348-44755367 None:intergenic 30.0%
GGAAAGCAATATTCTCAATT+CGG - chr5_1:44755813-44755832 None:intergenic 30.0%
GAATTGAGAATATTGCTTTC+CGG + chr5_1:44755812-44755831 Msa0732380:CDS 30.0%
! TCCTTTTCCTCTTGTATTTA+GGG - chr5_1:44755928-44755947 None:intergenic 30.0%
! TTCCTTTTCCTCTTGTATTT+AGG - chr5_1:44755929-44755948 None:intergenic 30.0%
AAATACAAGAGGAAAAGGAA+AGG + chr5_1:44755929-44755948 Msa0732380:CDS 30.0%
! AGGAAAATTGACTCTAATGT+TGG + chr5_1:44756031-44756050 Msa0732380:CDS 30.0%
ATGTTGAGAAATGTGACAAA+TGG + chr5_1:44756079-44756098 Msa0732380:CDS 30.0%
TTTATCGATGTTTATGAAGC+AGG + chr5_1:44756103-44756122 Msa0732380:CDS 30.0%
!! TTAGAGCTTTTGATAACACT+TGG + chr5_1:44756250-44756269 Msa0732380:CDS 30.0%
TATTCTTGAAATAAGCGAAC+AGG - chr5_1:44756463-44756482 None:intergenic 30.0%
!!! ATTTCGAGAAGTATTTTGGA+TGG + chr5_1:44756482-44756501 Msa0732380:CDS 30.0%
!! AAGTATTTTGGATGGCAAAA+AGG + chr5_1:44756490-44756509 Msa0732380:CDS 30.0%
! AGATGATATTCTAAGGGAAA+TGG + chr5_1:44756891-44756910 Msa0732380:CDS 30.0%
GAAATTTCCACTTACAGTCA+AGG - chr5_1:44751844-44751863 None:intergenic 35.0%
AGAAAGAGGAAAAAGGCTTA+CGG - chr5_1:44751974-44751993 None:intergenic 35.0%
AAGCACTAGTGAAACTGTTT+GGG + chr5_1:44752136-44752155 Msa0732380:intron 35.0%
AAACTGTTTGGGAGAACTTA+TGG + chr5_1:44752147-44752166 Msa0732380:intron 35.0%
GTATGATCATGGAAAACTGA+AGG - chr5_1:44752409-44752428 None:intergenic 35.0%
! GCATTTGAAGCAGTTATCTT+TGG + chr5_1:44752496-44752515 Msa0732380:intron 35.0%
CTCTCAGGGAAAAAAAATAC+AGG - chr5_1:44752782-44752801 None:intergenic 35.0%
TATGTTGAACAAGGTTCACT+TGG + chr5_1:44753030-44753049 Msa0732380:CDS 35.0%
!!! ATGGACTGTGTTCGATTTTT+TGG - chr5_1:44753119-44753138 None:intergenic 35.0%
! ACCAAACACCAAATTGCTTT+TGG + chr5_1:44753188-44753207 Msa0732380:CDS 35.0%
!! CCAAACACCAAATTGCTTTT+GGG + chr5_1:44753189-44753208 Msa0732380:CDS 35.0%
GAACTTTCCCAAAAGCAATT+TGG - chr5_1:44753199-44753218 None:intergenic 35.0%
! ATGGTGTATCAAATTTTGGG+AGG + chr5_1:44753297-44753316 Msa0732380:CDS 35.0%
GATGACATCAATATGAGACT+CGG - chr5_1:44753352-44753371 None:intergenic 35.0%
GAGTCTCATATTGATGTCAT+CGG + chr5_1:44753351-44753370 Msa0732380:CDS 35.0%
GAAGTTAAAGAGTTGGATGT+TGG + chr5_1:44753552-44753571 Msa0732380:CDS 35.0%
CATTTCATCTACTACTGCTT+TGG - chr5_1:44753616-44753635 None:intergenic 35.0%
TACTTCGCAGTATAGTCATT+TGG + chr5_1:44753926-44753945 Msa0732380:CDS 35.0%
ATTGACATCGTGAAGAAACA+TGG - chr5_1:44754028-44754047 None:intergenic 35.0%
!! TTGGCTCTACTAAGTTACAA+AGG + chr5_1:44754051-44754070 Msa0732380:CDS 35.0%
AGTTTGGATGATATGGATCT+TGG + chr5_1:44754086-44754105 Msa0732380:CDS 35.0%
CATTTAAGAAATAACGGCGA+AGG + chr5_1:44754176-44754195 Msa0732380:CDS 35.0%
ATGGATCAAACTCTTGTATG+CGG - chr5_1:44754240-44754259 None:intergenic 35.0%
TTGTGTTACATTTCTTCCAC+TGG - chr5_1:44754319-44754338 None:intergenic 35.0%
AAGCTGAAATGGATATGTTG+TGG + chr5_1:44754399-44754418 Msa0732380:CDS 35.0%
!!! GAGTTATTTTGATGACTCAG+AGG + chr5_1:44754448-44754467 Msa0732380:CDS 35.0%
! ACTTCTTCTAAGTTTTCCTC+AGG - chr5_1:44754589-44754608 None:intergenic 35.0%
ATTAACATCTCTGATATGGG+TGG - chr5_1:44754677-44754696 None:intergenic 35.0%
AGACTATTTGAGAGAGCTTA+TGG + chr5_1:44754841-44754860 Msa0732380:intron 35.0%
!! CTTATTTCTATACGCTTTCC+AGG + chr5_1:44754899-44754918 Msa0732380:intron 35.0%
! GTTGATTTCATAAGCTATCC+TGG - chr5_1:44754920-44754939 None:intergenic 35.0%
!! ATAATCTTGTTGGTATTGGC+AGG + chr5_1:44755016-44755035 Msa0732380:intron 35.0%
!!! CTTTGGTTTTCTTCCGATAT+CGG - chr5_1:44755164-44755183 None:intergenic 35.0%
GAATTAATGACCAAACGCTT+TGG - chr5_1:44755181-44755200 None:intergenic 35.0%
! TGCAATTTTTCTCTGAGTTC+AGG - chr5_1:44755203-44755222 None:intergenic 35.0%
! CAAGTATAGAGCGTAGTTTT+TGG - chr5_1:44755428-44755447 None:intergenic 35.0%
CAAAAACTACGCTCTATACT+TGG + chr5_1:44755426-44755445 Msa0732380:CDS 35.0%
CAAAACATGCTTGACATCAT+CGG - chr5_1:44755570-44755589 None:intergenic 35.0%
! GTTTTTAACATTGATGCGAG+AGG + chr5_1:44755655-44755674 Msa0732380:CDS 35.0%
ACACTTGAGCCATAAACTTT+CGG - chr5_1:44755697-44755716 None:intergenic 35.0%
!! ACCTTGATTTGGTACTTCTA+GGG - chr5_1:44755763-44755782 None:intergenic 35.0%
!! AACCTTGATTTGGTACTTCT+AGG - chr5_1:44755764-44755783 None:intergenic 35.0%
! ACATTTTCGCAACCTTGATT+TGG - chr5_1:44755774-44755793 None:intergenic 35.0%
ATACTTCAACACTCTATGCT+TGG + chr5_1:44755862-44755881 Msa0732380:CDS 35.0%
CATTAGACCCTAAATACAAG+AGG + chr5_1:44755918-44755937 Msa0732380:CDS 35.0%
ACCCTAAATACAAGAGGAAA+AGG + chr5_1:44755924-44755943 Msa0732380:CDS 35.0%
TCTTCTTAGATACAATCGCT+AGG + chr5_1:44756011-44756030 Msa0732380:CDS 35.0%
! AATTGACTCTAATGTTGGAG+AGG + chr5_1:44756036-44756055 Msa0732380:CDS 35.0%
CAGAATCTCATGCTGTATAT+CGG - chr5_1:44756182-44756201 None:intergenic 35.0%
CGGTTAGTACTAAAACTTCA+CGG - chr5_1:44756516-44756535 None:intergenic 35.0%
!! CGTGAAGTTTTAGTACTAAC+CGG + chr5_1:44756514-44756533 Msa0732380:CDS 35.0%
!! GTGAAGTTTTAGTACTAACC+GGG + chr5_1:44756515-44756534 Msa0732380:CDS 35.0%
!! TGAAGTTTTAGTACTAACCG+GGG + chr5_1:44756516-44756535 Msa0732380:CDS 35.0%
CTTTGAACGTGGGAAAATAA+TGG + chr5_1:44756549-44756568 Msa0732380:CDS 35.0%
AGCTGTCAAACTAATTCCTT+CGG - chr5_1:44756635-44756654 None:intergenic 35.0%
GGTTTATGTTTATCAGCTCT+TGG + chr5_1:44756747-44756766 Msa0732380:CDS 35.0%
! TATTCTAAGGGAAATGGTTG+AGG + chr5_1:44756897-44756916 Msa0732380:CDS 35.0%
CAAGCACTAGTGAAACTGTT+TGG + chr5_1:44752135-44752154 Msa0732380:intron 40.0%
TGCTTCAAATGCTGTTCAGA+AGG - chr5_1:44752488-44752507 None:intergenic 40.0%
! AAGCAGTTATCTTTGGCTCA+TGG + chr5_1:44752503-44752522 Msa0732380:CDS 40.0%
CACCATATGGTTATGGACAA+AGG + chr5_1:44752586-44752605 Msa0732380:CDS 40.0%
CACCTTTGTCCATAACCATA+TGG - chr5_1:44752591-44752610 None:intergenic 40.0%
CAGACATTCGTATAAGGTCA+AGG + chr5_1:44752617-44752636 Msa0732380:CDS 40.0%
!!! GTGTTCGATTTTTTGGAGGA+TGG - chr5_1:44753112-44753131 None:intergenic 40.0%
!!! GACTGTGTTCGATTTTTTGG+AGG - chr5_1:44753116-44753135 None:intergenic 40.0%
! TGGTAATGAAGAGCAATCCT+CGG - chr5_1:44753172-44753191 None:intergenic 40.0%
!! CCCAAAAGCAATTTGGTGTT+TGG - chr5_1:44753192-44753211 None:intergenic 40.0%
! TTGGATGTTTCTATCCTGAC+AGG - chr5_1:44753597-44753616 None:intergenic 40.0%
! ACAAGTCTTCTTCCCCTTTT+GGG - chr5_1:44753766-44753785 None:intergenic 40.0%
GGAAGAGGAATAATAGCAAG+TGG - chr5_1:44753819-44753838 None:intergenic 40.0%
ATTGGATCAGCATCTTGATC+AGG - chr5_1:44753840-44753859 None:intergenic 40.0%
GTTTGGATCGTAATGCTCAA+CGG - chr5_1:44753865-44753884 None:intergenic 40.0%
GTTGAGCATTACGATCCAAA+CGG + chr5_1:44753864-44753883 Msa0732380:CDS 40.0%
! AAGTTACAAAGGAAGAGCAC+AGG + chr5_1:44754062-44754081 Msa0732380:CDS 40.0%
CACAGGTAGTTTGGATGATA+TGG + chr5_1:44754079-44754098 Msa0732380:CDS 40.0%
GATCTTGGAAATAGATGGGA+AGG + chr5_1:44754101-44754120 Msa0732380:CDS 40.0%
ATCGAAGACAGGATTTCATG+AGG + chr5_1:44754136-44754155 Msa0732380:CDS 40.0%
TCGAAGACAGGATTTCATGA+GGG + chr5_1:44754137-44754156 Msa0732380:CDS 40.0%
ATAGGAGGTTCTTCTATGAC+AGG - chr5_1:44754290-44754309 None:intergenic 40.0%
TGTAACACAACAAACGGTGT+TGG + chr5_1:44754329-44754348 Msa0732380:CDS 40.0%
! AAACGGTGTTGGACAAAATG+TGG + chr5_1:44754340-44754359 Msa0732380:CDS 40.0%
ATCCTCTCCATGAGAAATCT+CGG - chr5_1:44754369-44754388 None:intergenic 40.0%
! GAAAGAACTTGAAGTGTCAC+TGG + chr5_1:44754421-44754440 Msa0732380:CDS 40.0%
! TTCTAAGTTTTCCTCAGGCT+CGG - chr5_1:44754584-44754603 None:intergenic 40.0%
GGAATATACTGCTGTAGATG+TGG + chr5_1:44754643-44754662 Msa0732380:CDS 40.0%
TCATCTTCATCATCCTTGGT+GGG - chr5_1:44755101-44755120 None:intergenic 40.0%
ATCATCTTCATCATCCTTGG+TGG - chr5_1:44755102-44755121 None:intergenic 40.0%
GTCATCATCTTCATCATCCT+TGG - chr5_1:44755105-44755124 None:intergenic 40.0%
TTCTCGTGATGAACCGATAT+CGG + chr5_1:44755148-44755167 Msa0732380:CDS 40.0%
GAAGCCGAATCCAAAAAAAG+AGG + chr5_1:44755293-44755312 Msa0732380:CDS 40.0%
!!! GCCACCTCTTTTTTTGGATT+CGG - chr5_1:44755300-44755319 None:intergenic 40.0%
TGTGTGATATCTCATACTCC+TGG + chr5_1:44755320-44755339 Msa0732380:CDS 40.0%
TAGCTACCTGAAGTTATTCC+CGG + chr5_1:44755379-44755398 Msa0732380:CDS 40.0%
!!! GTTTTTGGAGCAAGAACTAG+AGG - chr5_1:44755413-44755432 None:intergenic 40.0%
TGAATCAAGTACACCGGTAT+AGG - chr5_1:44755479-44755498 None:intergenic 40.0%
ATACCGGTGTACTTGATTCA+TGG + chr5_1:44755479-44755498 Msa0732380:CDS 40.0%
TTCATGGTCGTAGAACCTAT+AGG + chr5_1:44755495-44755514 Msa0732380:CDS 40.0%
TCATGGTCGTAGAACCTATA+GGG + chr5_1:44755496-44755515 Msa0732380:CDS 40.0%
ATTCTGCTTGAACACCCTAT+AGG - chr5_1:44755513-44755532 None:intergenic 40.0%
AATACAGTTGCTACTCTTCC+TGG + chr5_1:44755530-44755549 Msa0732380:CDS 40.0%
! CGATGATGTCAAGCATGTTT+TGG + chr5_1:44755568-44755587 Msa0732380:CDS 40.0%
GCCTTGAGAAGATCCAAAAA+TGG + chr5_1:44755594-44755613 Msa0732380:CDS 40.0%
!!! GCCATTTTTGGATCTTCTCA+AGG - chr5_1:44755598-44755617 None:intergenic 40.0%
!!! TCGGATGTGAATGCCATTTT+TGG - chr5_1:44755610-44755629 None:intergenic 40.0%
ACATCCGAGTGTTCTAATCA+TGG + chr5_1:44755622-44755641 Msa0732380:CDS 40.0%
CATCCGAGTGTTCTAATCAT+GGG + chr5_1:44755623-44755642 Msa0732380:CDS 40.0%
TAGCCCATGATTAGAACACT+CGG - chr5_1:44755629-44755648 None:intergenic 40.0%
GTTTGCACACCGAAAGTTTA+TGG + chr5_1:44755685-44755704 Msa0732380:CDS 40.0%
! AGTTTATGGCTCAAGTGTTG+AGG + chr5_1:44755699-44755718 Msa0732380:CDS 40.0%
!! GTTTATGGCTCAAGTGTTGA+GGG + chr5_1:44755700-44755719 Msa0732380:CDS 40.0%
!! ACCCTAGAAGTACCAAATCA+AGG + chr5_1:44755759-44755778 Msa0732380:CDS 40.0%
AACACTTCGTGAGGGAATTT+CGG - chr5_1:44755893-44755912 None:intergenic 40.0%
ATGCTTTCAACACTTCGTGA+GGG - chr5_1:44755901-44755920 None:intergenic 40.0%
AATGCTTTCAACACTTCGTG+AGG - chr5_1:44755902-44755921 None:intergenic 40.0%
AAGAGGAAAAGGAAAGGAGT+AGG + chr5_1:44755935-44755954 Msa0732380:CDS 40.0%
CGCAATATTTGATCGAGTCA+CGG + chr5_1:44755978-44755997 Msa0732380:CDS 40.0%
GCAATATTTGATCGAGTCAC+GGG + chr5_1:44755979-44755998 Msa0732380:CDS 40.0%
GTTGGAGAGGAAAGAATTCA+AGG + chr5_1:44756049-44756068 Msa0732380:CDS 40.0%
! TATGAAGCAGGAAGTTCTGA+TGG + chr5_1:44756115-44756134 Msa0732380:CDS 40.0%
! TCAAAAGCTCTAACTCGAGA+GGG - chr5_1:44756243-44756262 None:intergenic 40.0%
! ATCAAAAGCTCTAACTCGAG+AGG - chr5_1:44756244-44756263 None:intergenic 40.0%
CACTTGGATCAATACATCCT+TGG + chr5_1:44756266-44756285 Msa0732380:CDS 40.0%
TCTTGACAACACGGTAGATA+AGG - chr5_1:44756405-44756424 None:intergenic 40.0%
! CCTTTTCGTTCTTGACAACA+CGG - chr5_1:44756414-44756433 None:intergenic 40.0%
ATGGATAAATTTGAGGAGCC+TGG + chr5_1:44756568-44756587 Msa0732380:CDS 40.0%
AGTATCTTTGATACTCCACC+AGG - chr5_1:44756589-44756608 None:intergenic 40.0%
!!! TAGCTTGCTTCGTTTTCGAA+GGG - chr5_1:44756693-44756712 None:intergenic 40.0%
!!! ATAGCTTGCTTCGTTTTCGA+AGG - chr5_1:44756694-44756713 None:intergenic 40.0%
! TAAACCATTTTCTGCTGACC+AGG - chr5_1:44756733-44756752 None:intergenic 40.0%
!! ATAAGTACCGAAGAACCACT+TGG + chr5_1:44756791-44756810 Msa0732380:CDS 40.0%
ACTCTTTCCAAGTGGTTCTT+CGG - chr5_1:44756801-44756820 None:intergenic 40.0%
AAGAACCACTTGGAAAGAGT+GGG + chr5_1:44756801-44756820 Msa0732380:CDS 40.0%
GATGAAGCCTTGACTGTAAG+TGG + chr5_1:44751834-44751853 Msa0732380:CDS 45.0%
AGCAACTTCAGCAGCTGATT+TGG - chr5_1:44751871-44751890 None:intergenic 45.0%
GATTCCTGGACGTAAGAAAC+AGG - chr5_1:44752665-44752684 None:intergenic 45.0%
!! AGCACACATATGTCGATTCC+TGG - chr5_1:44752679-44752698 None:intergenic 45.0%
TCTATACAGAGAAAGCCCCA+TGG + chr5_1:44752973-44752992 Msa0732380:CDS 45.0%
CATGTGAAAATCAGCCCCAT+CGG + chr5_1:44753136-44753155 Msa0732380:CDS 45.0%
ATCGGATTCAAAACCGACGA+TGG + chr5_1:44753369-44753388 Msa0732380:CDS 45.0%
TGGCTGCGAAGTTAAAGAGT+TGG + chr5_1:44753545-44753564 Msa0732380:CDS 45.0%
! GACAGGTGGCATGTTTCTAA+AGG - chr5_1:44753580-44753599 None:intergenic 45.0%
TTAGAAACATGCCACCTGTC+AGG + chr5_1:44753580-44753599 Msa0732380:CDS 45.0%
! GATGTTTCTATCCTGACAGG+TGG - chr5_1:44753594-44753613 None:intergenic 45.0%
!! CATTTGATGGCACCCTTTTC+CGG - chr5_1:44753681-44753700 None:intergenic 45.0%
AGCTTCTGGTGTACAATAGG+AGG + chr5_1:44753733-44753752 Msa0732380:CDS 45.0%
GCTTCTGGTGTACAATAGGA+GGG + chr5_1:44753734-44753753 Msa0732380:CDS 45.0%
TAGGAGGGCTAAAACCCAAA+AGG + chr5_1:44753749-44753768 Msa0732380:CDS 45.0%
AGGAGGGCTAAAACCCAAAA+GGG + chr5_1:44753750-44753769 Msa0732380:CDS 45.0%
! CACAAGTCTTCTTCCCCTTT+TGG - chr5_1:44753767-44753786 None:intergenic 45.0%
CAAAAGGGGAAGAAGACTTG+TGG + chr5_1:44753765-44753784 Msa0732380:CDS 45.0%
!! TTGTGGCGGTGTTGATCAAA+AGG + chr5_1:44753782-44753801 Msa0732380:CDS 45.0%
TCAGCATCTTGATCAGGAAG+AGG - chr5_1:44753834-44753853 None:intergenic 45.0%
TCGTAATGCTCAACGGCTAT+TGG - chr5_1:44753858-44753877 None:intergenic 45.0%
!! TCAGCATCATCTGCTTTTGC+AGG - chr5_1:44753996-44754015 None:intergenic 45.0%
! AAGGAAGAGCACAGGTAGTT+TGG + chr5_1:44754070-44754089 Msa0732380:CDS 45.0%
TTCTTCCACTGGTCAGTGAT+AGG - chr5_1:44754308-44754327 None:intergenic 45.0%
GTGGAAACCGAGATTTCTCA+TGG + chr5_1:44754359-44754378 Msa0732380:CDS 45.0%
AACCGAGATTTCTCATGGAG+AGG + chr5_1:44754364-44754383 Msa0732380:CDS 45.0%
ACATTGCATCTAGATGGACG+AGG + chr5_1:44754805-44754824 Msa0732380:intron 45.0%
! GGCAGGTTGAAAATTCAGTG+TGG + chr5_1:44755033-44755052 Msa0732380:intron 45.0%
AGATAAAGAAGAGCCCACCA+AGG + chr5_1:44755085-44755104 Msa0732380:CDS 45.0%
!! AAGTGTCGGTCGGGAAAAAA+TGG - chr5_1:44755130-44755149 None:intergenic 45.0%
! CGGAAGAAAACCAAAGCGTT+TGG + chr5_1:44755168-44755187 Msa0732380:CDS 45.0%
TTTCTTTGGCGAAACGTTGC+AGG + chr5_1:44755248-44755267 Msa0732380:CDS 45.0%
TTCTTTGGCGAAACGTTGCA+GGG + chr5_1:44755249-44755268 Msa0732380:CDS 45.0%
GATTCGGCTTCAATTAGCTC+TGG - chr5_1:44755284-44755303 None:intergenic 45.0%
GCCGAATCCAAAAAAAGAGG+TGG + chr5_1:44755296-44755315 Msa0732380:CDS 45.0%
!!! CACACAGCCACCTCTTTTTT+TGG - chr5_1:44755306-44755325 None:intergenic 45.0%
ATATCTCATACTCCTGGAGC+CGG + chr5_1:44755326-44755345 Msa0732380:CDS 45.0%
! AGAAAAGTTTTTCCGGCTCC+AGG - chr5_1:44755341-44755360 None:intergenic 45.0%
AGCTACCTGAAGTTATTCCC+GGG + chr5_1:44755380-44755399 Msa0732380:CDS 45.0%
CAAGTGGGAGATTCCTATAC+CGG + chr5_1:44755463-44755482 Msa0732380:CDS 45.0%
CGACCATGAATCAAGTACAC+CGG - chr5_1:44755485-44755504 None:intergenic 45.0%
TTGACATCATCGGTAGGCTT+GGG - chr5_1:44755560-44755579 None:intergenic 45.0%
ACATGCTTGACATCATCGGT+AGG - chr5_1:44755566-44755585 None:intergenic 45.0%
TCATCAAGTACCAAGAGTCC+AGG - chr5_1:44755731-44755750 None:intergenic 45.0%
GGACTCTTGGTACTTGATGA+AGG + chr5_1:44755731-44755750 Msa0732380:CDS 45.0%
AGGAAAGGAGTAGGCCAAAA+AGG + chr5_1:44755944-44755963 Msa0732380:CDS 45.0%
AGGCCAAAAAGGAGCAGAAA+AGG + chr5_1:44755955-44755974 Msa0732380:CDS 45.0%
! GGAAGTTCTGATGGTTTACC+AGG + chr5_1:44756124-44756143 Msa0732380:CDS 45.0%
AGCGACATGTTTAAGTGCAG+TGG + chr5_1:44756214-44756233 Msa0732380:CDS 45.0%
TGGATCAATACATCCTTGGC+TGG + chr5_1:44756270-44756289 Msa0732380:CDS 45.0%
TCCTTGGCTGGTAAAAACTG+CGG + chr5_1:44756282-44756301 Msa0732380:CDS 45.0%
CCGTGTTGTCAAGAACGAAA+AGG + chr5_1:44756411-44756430 Msa0732380:CDS 45.0%
AACTCGAGCTCTTTGAACGT+GGG + chr5_1:44756539-44756558 Msa0732380:CDS 45.0%
GATAAATTTGAGGAGCCTGG+TGG + chr5_1:44756571-44756590 Msa0732380:CDS 45.0%
TGCATCTCGTGTGATCATGT+TGG + chr5_1:44756654-44756673 Msa0732380:CDS 45.0%
TGATCATGTTGGATTCCGAG+TGG + chr5_1:44756665-44756684 Msa0732380:CDS 45.0%
! GTTTATCAGCTCTTGGTGAC+AGG + chr5_1:44756754-44756773 Msa0732380:CDS 45.0%
GAAGAACCACTTGGAAAGAG+TGG + chr5_1:44756800-44756819 Msa0732380:CDS 45.0%
TCTAAGGGAAATGGTTGAGG+AGG + chr5_1:44756900-44756919 Msa0732380:CDS 45.0%
!!! ATTTTTTTCTTTTTAATTAT+AGG + chr5_1:44752927-44752946 Msa0732380:intron 5.0%
! TGCTCCTGTTTCTTACGTCC+AGG + chr5_1:44752658-44752677 Msa0732380:CDS 50.0%
!! TTCCCTGAGAGTGTCGTGTT+TGG + chr5_1:44752791-44752810 Msa0732380:intron 50.0%
CACCAAACACGACACTCTCA+GGG - chr5_1:44752796-44752815 None:intergenic 50.0%
ACACCAAACACGACACTCTC+AGG - chr5_1:44752797-44752816 None:intergenic 50.0%
!! CGATGGGGCTGATTTTCACA+TGG - chr5_1:44753138-44753157 None:intergenic 50.0%
CGGTACTAACATGCCATCGT+CGG - chr5_1:44753385-44753404 None:intergenic 50.0%
ACGTGCATGATCAGCTCTCT+TGG - chr5_1:44753436-44753455 None:intergenic 50.0%
! GGGTGCCATCAAATGTCAGA+AGG + chr5_1:44753686-44753705 Msa0732380:CDS 50.0%
!! GCTGGCCTTCTGACATTTGA+TGG - chr5_1:44753694-44753713 None:intergenic 50.0%
CCAGCAAACCGAATGCTTGT+CGG + chr5_1:44753709-44753728 Msa0732380:CDS 50.0%
CAGCAAACCGAATGCTTGTC+GGG + chr5_1:44753710-44753729 Msa0732380:CDS 50.0%
AGAAGCTCCCGACAAGCATT+CGG - chr5_1:44753720-44753739 None:intergenic 50.0%
GGGAGCTTCTGGTGTACAAT+AGG + chr5_1:44753730-44753749 Msa0732380:CDS 50.0%
GGAGGGCTAAAACCCAAAAG+GGG + chr5_1:44753751-44753770 Msa0732380:CDS 50.0%
AAGGGGAAGAAGACTTGTGG+CGG + chr5_1:44753768-44753787 Msa0732380:CDS 50.0%
CTTCTAGCAACGTTGCCGTT+TGG - chr5_1:44753882-44753901 None:intergenic 50.0%
AACCTCCTATCACTGACCAG+TGG + chr5_1:44754300-44754319 Msa0732380:CDS 50.0%
TTCCACTGGTCAGTGATAGG+AGG - chr5_1:44754305-44754324 None:intergenic 50.0%
!!! AATTGTTTTGGCCGAGCCTG+AGG + chr5_1:44754570-44754589 Msa0732380:CDS 50.0%
AAATTCAGTGTGGCGCCAAG+AGG + chr5_1:44755043-44755062 Msa0732380:CDS 50.0%
CATCACACTGCTTCTCCTCT+TGG - chr5_1:44755061-44755080 None:intergenic 50.0%
CAAGAGGAGAAGCAGTGTGA+TGG + chr5_1:44755059-44755078 Msa0732380:CDS 50.0%
!! TCATCACGAGAAGTGTCGGT+CGG - chr5_1:44755140-44755159 None:intergenic 50.0%
! CGGTTCATCACGAGAAGTGT+CGG - chr5_1:44755144-44755163 None:intergenic 50.0%
GCTACCTGAAGTTATTCCCG+GGG + chr5_1:44755381-44755400 Msa0732380:CDS 50.0%
TCTTCCCCGGGAATAACTTC+AGG - chr5_1:44755388-44755407 None:intergenic 50.0%
AGAACTAGAGGTCTCTTCCC+CGG - chr5_1:44755401-44755420 None:intergenic 50.0%
CTTGACATCATCGGTAGGCT+TGG - chr5_1:44755561-44755580 None:intergenic 50.0%
!! CAAGTGTTGAGGGAAAGTCC+TGG + chr5_1:44755710-44755729 Msa0732380:CDS 50.0%
! GCGCCTTTTCTGCTCCTTTT+TGG - chr5_1:44755961-44755980 None:intergenic 50.0%
! ACCGCAGTTTTTACCAGCCA+AGG - chr5_1:44756286-44756305 None:intergenic 50.0%
TTCAAAGAGCTCGAGTTCCC+CGG - chr5_1:44756536-44756555 None:intergenic 50.0%
GAACTCGAGCTCTTTGAACG+TGG + chr5_1:44756538-44756557 Msa0732380:CDS 50.0%
TCAATCACAGCTTGTGCCGA+AGG + chr5_1:44756616-44756635 Msa0732380:CDS 50.0%
! CGTTTTCGAAGGGTTCCACT+CGG - chr5_1:44756683-44756702 None:intergenic 50.0%
TCGTCCTGGTCAGCAGAAAA+TGG + chr5_1:44756726-44756745 Msa0732380:CDS 50.0%
! GTCGAGCATGATTTTCAGCG+AGG + chr5_1:44756825-44756844 Msa0732380:CDS 50.0%
TTGTCGAGGATCCTTCTCGT+TGG + chr5_1:44756851-44756870 Msa0732380:CDS 50.0%
TTCTCAGCTTGCCAACGAGA+AGG - chr5_1:44756865-44756884 None:intergenic 50.0%
! CTTTGGCTCATGGCATCCTG+TGG + chr5_1:44752513-44752532 Msa0732380:CDS 55.0%
CTATCACCTCCTCAACGAGC+CGG + chr5_1:44752697-44752716 Msa0732380:CDS 55.0%
!! ACTGAATCACCGGCTCGTTG+AGG - chr5_1:44752709-44752728 None:intergenic 55.0%
CAACGAGCCGGTGATTCAGT+TGG + chr5_1:44752709-44752728 Msa0732380:CDS 55.0%
ACACGAGCACTCTGAGCCAT+GGG - chr5_1:44752992-44753011 None:intergenic 55.0%
GTGAAAATCAGCCCCATCGG+TGG + chr5_1:44753139-44753158 Msa0732380:CDS 55.0%
TCGGATGAAGACCACCGATG+GGG - chr5_1:44753153-44753172 None:intergenic 55.0%
CTCGGATGAAGACCACCGAT+GGG - chr5_1:44753154-44753173 None:intergenic 55.0%
GCTTACGACGTTCCAAACGC+AGG + chr5_1:44753499-44753518 Msa0732380:CDS 55.0%
TGGCTGTACATGCCTGCGTT+TGG - chr5_1:44753514-44753533 None:intergenic 55.0%
! GTACAGCCAGAGCGTTACGT+TGG + chr5_1:44753525-44753544 Msa0732380:CDS 55.0%
! CCGACAAGCATTCGGTTTGC+TGG - chr5_1:44753712-44753731 None:intergenic 55.0%
GAATGCTTGTCGGGAGCTTC+TGG + chr5_1:44753719-44753738 Msa0732380:CDS 55.0%
!! CATCACGAGAAGTGTCGGTC+GGG - chr5_1:44755139-44755158 None:intergenic 55.0%
GAACTAGAGGTCTCTTCCCC+GGG - chr5_1:44755400-44755419 None:intergenic 55.0%
GAGGGAAAGTCCTGGACTCT+TGG + chr5_1:44755718-44755737 Msa0732380:CDS 55.0%
AGCGAACAGGCGCAATGTTG+TGG - chr5_1:44756450-44756469 None:intergenic 55.0%
ATTGCACGTGCGTTTCGTCC+TGG + chr5_1:44756712-44756731 Msa0732380:CDS 55.0%
! GCTCTTGGTGACAGGTTCGT+TGG + chr5_1:44756762-44756781 Msa0732380:CDS 55.0%
! CTTGGTGACAGGTTCGTTGG+AGG + chr5_1:44756765-44756784 Msa0732380:CDS 55.0%
CGACACCCACTCTTTCCAAG+TGG - chr5_1:44756809-44756828 None:intergenic 55.0%
! TTTCAGCGAGGCGTTTGTCG+AGG + chr5_1:44756837-44756856 Msa0732380:CDS 55.0%
!! GAATCACCGGCTCGTTGAGG+AGG - chr5_1:44752706-44752725 None:intergenic 60.0%
CACGAGCACTCTGAGCCATG+GGG - chr5_1:44752991-44753010 None:intergenic 60.0%
GACACGAGCACTCTGAGCCA+TGG - chr5_1:44752993-44753012 None:intergenic 60.0%
CCTCGGATGAAGACCACCGA+TGG - chr5_1:44753155-44753174 None:intergenic 60.0%
CCATCGGTGGTCTTCATCCG+AGG + chr5_1:44753152-44753171 Msa0732380:CDS 60.0%
TCGCAGCCAACGTAACGCTC+TGG - chr5_1:44753534-44753553 None:intergenic 60.0%
! CCCTTTTCCGGACTGCTCTG+CGG - chr5_1:44753669-44753688 None:intergenic 60.0%
CCGCAGAGCAGTCCGGAAAA+GGG + chr5_1:44753666-44753685 Msa0732380:CDS 60.0%
CGCACGCGTGCACTCTTATG+TGG + chr5_1:44754739-44754758 Msa0732380:intron 60.0%
TCGGTAGGCTTGGGAACTCC+AGG - chr5_1:44755551-44755570 None:intergenic 60.0%
CCGGACTGCTCTGCGGCAAA+CGG - chr5_1:44753662-44753681 None:intergenic 65.0%
CCGTTTGCCGCAGAGCAGTC+CGG + chr5_1:44753659-44753678 Msa0732380:CDS 65.0%
GCCGCAGAGCAGTCCGGAAA+AGG + chr5_1:44753665-44753684 Msa0732380:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 44751807 44756981 44751807 ID=Msa0732380;Name=Msa0732380
chr5_1 mRNA 44751807 44756981 44751807 ID=Msa0732380-mRNA-1;Parent=Msa0732380;Name=Msa0732380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.6|1|1|1|5|0|1342
chr5_1 exon 44751807 44751972 44751807 ID=Msa0732380-mRNA-1:exon:12676;Parent=Msa0732380-mRNA-1
chr5_1 exon 44752497 44752747 44752497 ID=Msa0732380-mRNA-1:exon:12677;Parent=Msa0732380-mRNA-1
chr5_1 exon 44752949 44754469 44752949 ID=Msa0732380-mRNA-1:exon:12678;Parent=Msa0732380-mRNA-1
chr5_1 exon 44754559 44754705 44754559 ID=Msa0732380-mRNA-1:exon:12679;Parent=Msa0732380-mRNA-1
chr5_1 exon 44755038 44756981 44755038 ID=Msa0732380-mRNA-1:exon:12680;Parent=Msa0732380-mRNA-1
chr5_1 CDS 44751807 44751972 44751807 ID=Msa0732380-mRNA-1:cds;Parent=Msa0732380-mRNA-1
chr5_1 CDS 44752497 44752747 44752497 ID=Msa0732380-mRNA-1:cds;Parent=Msa0732380-mRNA-1
chr5_1 CDS 44752949 44754469 44752949 ID=Msa0732380-mRNA-1:cds;Parent=Msa0732380-mRNA-1
chr5_1 CDS 44754559 44754705 44754559 ID=Msa0732380-mRNA-1:cds;Parent=Msa0732380-mRNA-1
chr5_1 CDS 44755038 44756981 44755038 ID=Msa0732380-mRNA-1:cds;Parent=Msa0732380-mRNA-1
Gene Sequence

>Msa0732380

ATGATTGATAAGCAATTTATGTGTGCTGATGAAGCCTTGACTGTAAGTGGAAATTTCTGTGCCAAATCAGCTGCTGAAGTTGCTCATATACAACATTGGCAATCACAAACAATGATGAACAGAAAGAGGCGTCTAAATGAATCAAAGAATTCATTCAATTCTGACCCATTTGAAGCAGTTATCTTTGGCTCATGGCATCCTGTGGAGTTCATAAAAGTTAAATCAGGATCTATGAGCATACATTTCACAGATAATCACCATATGGTTATGGACAAAGGTGCTTTATCAGACATTCGTATAAGGTCAAGGAAAGCTACTGTGTCAGATTGCTCCTGTTTCTTACGTCCAGGAATCGACATATGTGTGCTATCACCTCCTCAACGAGCCGGTGATTCAGTTGGTTTAAATCTCGAGCCTGTTTGGGCTGATGCTAGAATAAGTTCTATACAGAGAAAGCCCCATGGCTCAGAGTGCTCGTGTCAGTTTTTCGTCAACTTTTATGTTGAACAAGGTTCACTTGGTTTAGAAATGAGAACTCTTTGTAAGGATGTCAAAGTATTCGGACTCAATCAGATCTCCATCCTCCAAAAAATCGAACACAGTCCATGTGAAAATCAGCCCCATCGGTGGTCTTCATCCGAGGATTGCTCTTCATTACCAAACACCAAATTGCTTTTGGGAAAGTTCTTAATCGATCTTTCATGGTTAGTTGTTACATCGGTTGTCAAGAATGTTTCGTTCTGTGCAAGATCAGTAGAAAACAAGATGGTGTATCAAATTTTGGGAGGTGATAGTAGTAATAGCTCATCGTCGAACACCGAGTCTCATATTGATGTCATCGGATTCAAAACCGACGATGGCATGTTAGTACCGATTGTTTCTCAAGTTGCTATAACTAACACCAAGAGAGCTGATCATGCACGTGAATCGCGTGCAGATGAAGCGTCATCATCTTATAATGTTGACGGCTTACGACGTTCCAAACGCAGGCATGTACAGCCAGAGCGTTACGTTGGCTGCGAAGTTAAAGAGTTGGATGTTGGTACCTTTAGAAACATGCCACCTGTCAGGATAGAAACATCCAAAGCAGTAGTAGATGAAATGTCGTTGCCGTTATCATTCTTGTTCCGTTTGCCGCAGAGCAGTCCGGAAAAGGGTGCCATCAAATGTCAGAAGGCCAGCAAACCGAATGCTTGTCGGGAGCTTCTGGTGTACAATAGGAGGGCTAAAACCCAAAAGGGGAAGAAGACTTGTGGCGGTGTTGATCAAAAGGAACATAAAAATCCACTTGCTATTATTCCTCTTCCTGATCAAGATGCTGATCCAATAGCCGTTGAGCATTACGATCCAAACGGCAACGTTGCTAGAAGTCATGAACATCAATCACGTGATATTACTTCGCAGTATAGTCATTTGGTTAATAATCCTAAACCAAGGAAAAACATCAATTTGTTAGATGATCCTGCAAAAGCAGATGATGCTGAGAAGAACGACCATGTTTCTTCACGATGTCAATTTTTTGGCTCTACTAAGTTACAAAGGAAGAGCACAGGTAGTTTGGATGATATGGATCTTGGAAATAGATGGGAAGGAATAAAAAGAAAATCGAAGACAGGATTTCATGAGGGAACATATCGCTCAACTCATTTAAGAAATAACGGCGAAGGAAGAAGTCACAATTATAAAGACAGAACTTTAAATGCGGCCGCATACAAGAGTTTGATCCATTCGTATTTACAGAATATTAATACAATACCTGTCATAGAAGAACCTCCTATCACTGACCAGTGGAAGAAATGTAACACAACAAACGGTGTTGGACAAAATGTGGAAACCGAGATTTCTCATGGAGAGGATGATGTAGAAAAAGCTGAAATGGATATGTTGTGGAAAGAACTTGAAGTGTCACTGGCATCGAGTTATTTTGATGACTCAGAGGTTTCAAATGCAATTGTTTTGGCCGAGCCTGAGGAAAACTTAGAAGAAGTTTGTGAACATGATAATAGATTGGATGAAGAAATTGGAATATACTGCTGTAGATGTGGCTTTGTGACCACCCATATCAGAGATGTTAATCCAATTTTTGTTGAAAATTCAGTGTGGCGCCAAGAGGAGAAGCAGTGTGATGGAGAAGATAAAGAAGAGCCCACCAAGGATGATGAAGATGATGACTTCCATTTTTTCCCGACCGACACTTCTCGTGATGAACCGATATCGGAAGAAAACCAAAGCGTTTGGTCATTAATTCCTGAACTCAGAGAAAAATTGCATGTGCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCGAAACGTTGCAGGGTCTACAAATCCAGAGCTAATTGAAGCCGAATCCAAAAAAAGAGGTGGCTGTGTGATATCTCATACTCCTGGAGCCGGAAAAACTTTTCTCATCATCGCTTTTCTTGTTAGCTACCTGAAGTTATTCCCGGGGAAGAGACCTCTAGTTCTTGCTCCAAAAACTACGCTCTATACTTGGTATAAAGAATTTATCAAGTGGGAGATTCCTATACCGGTGTACTTGATTCATGGTCGTAGAACCTATAGGGTGTTCAAGCAGAATACAGTTGCTACTCTTCCTGGAGTTCCCAAGCCTACCGATGATGTCAAGCATGTTTTGGATTGCCTTGAGAAGATCCAAAAATGGCATTCACATCCGAGTGTTCTAATCATGGGCTACACTTCGTTTTTAACATTGATGCGAGAGGATTCAAAGTTTGCACACCGAAAGTTTATGGCTCAAGTGTTGAGGGAAAGTCCTGGACTCTTGGTACTTGATGAAGGTCACAACCCTAGAAGTACCAAATCAAGGTTGCGAAAATGTTTGATGAAAGTGCAAACCGAATTGAGAATATTGCTTTCCGGTACTTTGTTTCAAAATAATTTCTGCGAATACTTCAACACTCTATGCTTGGCAAGACCGAAATTCCCTCACGAAGTGTTGAAAGCATTAGACCCTAAATACAAGAGGAAAAGGAAAGGAGTAGGCCAAAAAGGAGCAGAAAAGGCGCAATATTTGATCGAGTCACGGGCAAGAAAATTCTTCTTAGATACAATCGCTAGGAAAATTGACTCTAATGTTGGAGAGGAAAGAATTCAAGGATTAAACATGTTGAGAAATGTGACAAATGGTTTTATCGATGTTTATGAAGCAGGAAGTTCTGATGGTTTACCAGGTTTACAAATTTATACACTGCTAATGAATACAACCGATATACAGCATGAGATTCTGCAGAAACTTCACAGCGACATGTTTAAGTGCAGTGGATACCCTCTCGAGTTAGAGCTTTTGATAACACTTGGATCAATACATCCTTGGCTGGTAAAAACTGCGGTGTGTTCTCAGAAATTTTTAACAAAGGAGCAATTGAGTGATCTTGATAAGTACAAGTTTGATTTGAAAATAGGTTCAAAAGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTCAAGAACGAAAAGGTTCTTATCTTTTGCCACAACATTGCGCCTGTTCGCTTATTTCAAGAATATTTCGAGAAGTATTTTGGATGGCAAAAAGGCCGTGAAGTTTTAGTACTAACCGGGGAACTCGAGCTCTTTGAACGTGGGAAAATAATGGATAAATTTGAGGAGCCTGGTGGAGTATCAAAGATACTACTTGCTTCAATCACAGCTTGTGCCGAAGGAATTAGTTTGACAGCTGCATCTCGTGTGATCATGTTGGATTCCGAGTGGAACCCTTCGAAAACGAAGCAAGCTATTGCACGTGCGTTTCGTCCTGGTCAGCAGAAAATGGTTTATGTTTATCAGCTCTTGGTGACAGGTTCGTTGGAGGAAGATAAGTACCGAAGAACCACTTGGAAAGAGTGGGTGTCGAGCATGATTTTCAGCGAGGCGTTTGTCGAGGATCCTTCTCGTTGGCAAGCTGAGAAGATTGAAGATGATATTCTAAGGGAAATGGTTGAGGAGGATAAGTCTAAATCATTCCATATGATCATGAAGAATGAAAAGGCTTCAACAAAAACATAA
Protein sequence

>Msa0732380

MIDKQFMCADEALTVSGNFCAKSAAEVAHIQHWQSQTMMNRKRRLNESKNSFNSDPFEAVIFGSWHPVEFIKVKSGSMSIHFTDNHHMVMDKGALSDIRIRSRKATVSDCSCFLRPGIDICVLSPPQRAGDSVGLNLEPVWADARISSIQRKPHGSECSCQFFVNFYVEQGSLGLEMRTLCKDVKVFGLNQISILQKIEHSPCENQPHRWSSSEDCSSLPNTKLLLGKFLIDLSWLVVTSVVKNVSFCARSVENKMVYQILGGDSSNSSSSNTESHIDVIGFKTDDGMLVPIVSQVAITNTKRADHARESRADEASSSYNVDGLRRSKRRHVQPERYVGCEVKELDVGTFRNMPPVRIETSKAVVDEMSLPLSFLFRLPQSSPEKGAIKCQKASKPNACRELLVYNRRAKTQKGKKTCGGVDQKEHKNPLAIIPLPDQDADPIAVEHYDPNGNVARSHEHQSRDITSQYSHLVNNPKPRKNINLLDDPAKADDAEKNDHVSSRCQFFGSTKLQRKSTGSLDDMDLGNRWEGIKRKSKTGFHEGTYRSTHLRNNGEGRSHNYKDRTLNAAAYKSLIHSYLQNINTIPVIEEPPITDQWKKCNTTNGVGQNVETEISHGEDDVEKAEMDMLWKELEVSLASSYFDDSEVSNAIVLAEPEENLEEVCEHDNRLDEEIGIYCCRCGFVTTHIRDVNPIFVENSVWRQEEKQCDGEDKEEPTKDDEDDDFHFFPTDTSRDEPISEENQSVWSLIPELREKLHVHQKKAFEFLWRNVAGSTNPELIEAESKKRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQNTVATLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKFMAQVLRESPGLLVLDEGHNPRSTKSRLRKCLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFPHEVLKALDPKYKRKRKGVGQKGAEKAQYLIESRARKFFLDTIARKIDSNVGEERIQGLNMLRNVTNGFIDVYEAGSSDGLPGLQIYTLLMNTTDIQHEILQKLHSDMFKCSGYPLELELLITLGSIHPWLVKTAVCSQKFLTKEQLSDLDKYKFDLKIGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVRLFQEYFEKYFGWQKGREVLVLTGELELFERGKIMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSRWQAEKIEDDILREMVEEDKSKSFHMIMKNEKASTKT*