AlfalfaGEDB | Msa0732380

M. sativa cultivar zhongmu-4 / Msa0732380

KEGG: K10875
GO: GO:0000003 GO:0000018 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0033170 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0732380	AES99655.2	96.873	1343	40	2	1	1342	1	1342	0.0	2707

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0732380	sp\|F4K493\|CLSY2_ARATH	52.769	1336	518	23	41	1340	2	1260	0.0	1276

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0732380	G7K775	96.873	1343	40	2	1	1342	1	1342	0.0	2707

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TFs/TRs:

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Gene ID	Type	Classification
Msa0732380	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0389490	Msa0732380	0.843633	1.242474e-58	-8.615850e-47
Msa0732380	Msa0818700	0.844903	5.666180e-59	-8.615850e-47
Msa0732380	Msa1170860	0.871291	7.642925e-67	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0732380	MtrunA17_Chr5g0437621	97.088	1305	37	1	39	1342	1	1305	0.0	2635
Msa0732380	MtrunA17_Chr3g0114161	55.900	1322	464	25	48	1340	16	1247	0.0	1362
Msa0732380	MtrunA17_Chr7g0224051	62.857	875	291	15	477	1341	267	1117	0.0	1073
Msa0732380	MtrunA17_Chr7g0224051	47.273	275	118	6	96	358	12	271	9.32e-64	238
Msa0732380	MtrunA17_Chr1g0191141	58.653	861	321	16	486	1340	271	1102	0.0	962
Msa0732380	MtrunA17_Chr1g0191141	47.012	251	111	6	57	295	8	248	7.39e-56	212
Msa0732380	MtrunA17_Chr7g0233031	34.450	746	398	20	622	1329	542	1234	1.09e-109	375
Msa0732380	MtrunA17_Chr7g0233021	35.745	691	367	19	664	1321	567	1213	6.41e-109	373
Msa0732380	MtrunA17_Chr7g0225791	32.552	725	426	16	621	1321	583	1268	1.45e-105	364
Msa0732380	MtrunA17_Chr4g0047081	32.895	684	406	14	664	1329	578	1226	2.49e-102	354

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0732380	AT5G20420.1	52.769	1336	518	23	41	1340	2	1260	0.0	1276
Msa0732380	AT3G42670.2	65.990	788	250	8	561	1340	477	1254	0.0	1037
Msa0732380	AT3G42670.2	41.693	319	170	6	39	357	1	303	5.37e-62	233
Msa0732380	AT3G42670.3	65.990	788	250	8	561	1340	477	1254	0.0	1037
Msa0732380	AT3G42670.3	41.693	319	170	6	39	357	1	303	5.37e-62	233
Msa0732380	AT3G42670.1	65.990	788	250	8	561	1340	477	1254	0.0	1037
Msa0732380	AT3G42670.1	41.693	319	170	6	39	357	1	303	5.37e-62	233
Msa0732380	AT3G42670.4	65.693	787	256	6	561	1340	477	1256	0.0	1036
Msa0732380	AT3G42670.4	41.693	319	170	6	39	357	1	303	5.55e-62	233
Msa0732380	AT3G24340.1	32.466	730	424	17	622	1339	453	1125	7.00e-99	343

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Find 253 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATGATGAACAGAAAG+AGG	0.499384	5_1:+44751913	Msa0732380:CDS
AAACGGAACAAGAATGATAA+CGG	0.591966	5_1:-44753642	None:intergenic
AAACGGTGTTGGACAAAATG+TGG	0.570352	5_1:+44754340	Msa0732380:CDS
AAATACAAGAGGAAAAGGAA+AGG	0.649041	5_1:+44755929	Msa0732380:CDS
AAATTCAGTGTGGCGCCAAG+AGG	0.625626	5_1:+44755043	Msa0732380:CDS
AACACTTCGTGAGGGAATTT+CGG	0.305259	5_1:-44755890	None:intergenic
AACCGAGATTTCTCATGGAG+AGG	0.595400	5_1:+44754364	Msa0732380:CDS
AACCTCCTATCACTGACCAG+TGG	0.680042	5_1:+44754300	Msa0732380:CDS
AACCTTGATTTGGTACTTCT+AGG	0.320287	5_1:-44755761	None:intergenic
AACTCGAGCTCTTTGAACGT+GGG	0.583915	5_1:+44756539	Msa0732380:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTGCTCATATACAACAT+TGG	+	chr5_1:44751883-44751902	Msa0732380:CDS	30.0%
AAACAATGATGAACAGAAAG+AGG	+	chr5_1:44751913-44751932	Msa0732380:CDS	30.0%
GATAGCTTATGAAAAGCTTA+TGG	-	chr5_1:44752215-44752234	None:intergenic	30.0%
TAGATTAATAAATCCGTGCT+TGG	-	chr5_1:44752369-44752388	None:intergenic	30.0%
GCACGGATTTATTAATCTAT+AGG	+	chr5_1:44752370-44752389	Msa0732380:intron	30.0%
AGAATGTGATTGTATGATCA+TGG	-	chr5_1:44752420-44752439	None:intergenic	30.0%
TTTCACAGATAATCACCATA+TGG	+	chr5_1:44752573-44752592	Msa0732380:CDS	30.0%
AGATAATCACCATATGGTTA+TGG	+	chr5_1:44752579-44752598	Msa0732380:CDS	30.0%
CTTTATCAGACATTCGTATA+AGG	+	chr5_1:44752611-44752630	Msa0732380:CDS	30.0%
ATTTAAACCAACTGAATCAC+CGG	-	chr5_1:44752719-44752738	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	44751807	44756981	44751807	ID=Msa0732380;Name=Msa0732380
chr5_1	mRNA	44751807	44756981	44751807	ID=Msa0732380-mRNA-1;Parent=Msa0732380;Name=Msa0732380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|1\|0.6\|1\|1\|1\|5\|0\|1342
chr5_1	exon	44751807	44751972	44751807	ID=Msa0732380-mRNA-1:exon:12676;Parent=Msa0732380-mRNA-1
chr5_1	exon	44752497	44752747	44752497	ID=Msa0732380-mRNA-1:exon:12677;Parent=Msa0732380-mRNA-1
chr5_1	exon	44752949	44754469	44752949	ID=Msa0732380-mRNA-1:exon:12678;Parent=Msa0732380-mRNA-1
chr5_1	exon	44754559	44754705	44754559	ID=Msa0732380-mRNA-1:exon:12679;Parent=Msa0732380-mRNA-1
chr5_1	exon	44755038	44756981	44755038	ID=Msa0732380-mRNA-1:exon:12680;Parent=Msa0732380-mRNA-1
chr5_1	CDS	44751807	44751972	44751807	ID=Msa0732380-mRNA-1:cds;Parent=Msa0732380-mRNA-1
chr5_1	CDS	44752497	44752747	44752497	ID=Msa0732380-mRNA-1:cds;Parent=Msa0732380-mRNA-1
chr5_1	CDS	44752949	44754469	44752949	ID=Msa0732380-mRNA-1:cds;Parent=Msa0732380-mRNA-1
chr5_1	CDS	44754559	44754705	44754559	ID=Msa0732380-mRNA-1:cds;Parent=Msa0732380-mRNA-1
chr5_1	CDS	44755038	44756981	44755038	ID=Msa0732380-mRNA-1:cds;Parent=Msa0732380-mRNA-1

Gene Sequence

>Msa0732380

ATGATTGATAAGCAATTTATGTGTGCTGATGAAGCCTTGACTGTAAGTGGAAATTTCTGTGCCAAATCAGCTGCTGAAGTTGCTCATATACAACATTGGCAATCACAAACAATGATGAACAGAAAGAGGCGTCTAAATGAATCAAAGAATTCATTCAATTCTGACCCATTTGAAGCAGTTATCTTTGGCTCATGGCATCCTGTGGAGTTCATAAAAGTTAAATCAGGATCTATGAGCATACATTTCACAGATAATCACCATATGGTTATGGACAAAGGTGCTTTATCAGACATTCGTATAAGGTCAAGGAAAGCTACTGTGTCAGATTGCTCCTGTTTCTTACGTCCAGGAATCGACATATGTGTGCTATCACCTCCTCAACGAGCCGGTGATTCAGTTGGTTTAAATCTCGAGCCTGTTTGGGCTGATGCTAGAATAAGTTCTATACAGAGAAAGCCCCATGGCTCAGAGTGCTCGTGTCAGTTTTTCGTCAACTTTTATGTTGAACAAGGTTCACTTGGTTTAGAAATGAGAACTCTTTGTAAGGATGTCAAAGTATTCGGACTCAATCAGATCTCCATCCTCCAAAAAATCGAACACAGTCCATGTGAAAATCAGCCCCATCGGTGGTCTTCATCCGAGGATTGCTCTTCATTACCAAACACCAAATTGCTTTTGGGAAAGTTCTTAATCGATCTTTCATGGTTAGTTGTTACATCGGTTGTCAAGAATGTTTCGTTCTGTGCAAGATCAGTAGAAAACAAGATGGTGTATCAAATTTTGGGAGGTGATAGTAGTAATAGCTCATCGTCGAACACCGAGTCTCATATTGATGTCATCGGATTCAAAACCGACGATGGCATGTTAGTACCGATTGTTTCTCAAGTTGCTATAACTAACACCAAGAGAGCTGATCATGCACGTGAATCGCGTGCAGATGAAGCGTCATCATCTTATAATGTTGACGGCTTACGACGTTCCAAACGCAGGCATGTACAGCCAGAGCGTTACGTTGGCTGCGAAGTTAAAGAGTTGGATGTTGGTACCTTTAGAAACATGCCACCTGTCAGGATAGAAACATCCAAAGCAGTAGTAGATGAAATGTCGTTGCCGTTATCATTCTTGTTCCGTTTGCCGCAGAGCAGTCCGGAAAAGGGTGCCATCAAATGTCAGAAGGCCAGCAAACCGAATGCTTGTCGGGAGCTTCTGGTGTACAATAGGAGGGCTAAAACCCAAAAGGGGAAGAAGACTTGTGGCGGTGTTGATCAAAAGGAACATAAAAATCCACTTGCTATTATTCCTCTTCCTGATCAAGATGCTGATCCAATAGCCGTTGAGCATTACGATCCAAACGGCAACGTTGCTAGAAGTCATGAACATCAATCACGTGATATTACTTCGCAGTATAGTCATTTGGTTAATAATCCTAAACCAAGGAAAAACATCAATTTGTTAGATGATCCTGCAAAAGCAGATGATGCTGAGAAGAACGACCATGTTTCTTCACGATGTCAATTTTTTGGCTCTACTAAGTTACAAAGGAAGAGCACAGGTAGTTTGGATGATATGGATCTTGGAAATAGATGGGAAGGAATAAAAAGAAAATCGAAGACAGGATTTCATGAGGGAACATATCGCTCAACTCATTTAAGAAATAACGGCGAAGGAAGAAGTCACAATTATAAAGACAGAACTTTAAATGCGGCCGCATACAAGAGTTTGATCCATTCGTATTTACAGAATATTAATACAATACCTGTCATAGAAGAACCTCCTATCACTGACCAGTGGAAGAAATGTAACACAACAAACGGTGTTGGACAAAATGTGGAAACCGAGATTTCTCATGGAGAGGATGATGTAGAAAAAGCTGAAATGGATATGTTGTGGAAAGAACTTGAAGTGTCACTGGCATCGAGTTATTTTGATGACTCAGAGGTTTCAAATGCAATTGTTTTGGCCGAGCCTGAGGAAAACTTAGAAGAAGTTTGTGAACATGATAATAGATTGGATGAAGAAATTGGAATATACTGCTGTAGATGTGGCTTTGTGACCACCCATATCAGAGATGTTAATCCAATTTTTGTTGAAAATTCAGTGTGGCGCCAAGAGGAGAAGCAGTGTGATGGAGAAGATAAAGAAGAGCCCACCAAGGATGATGAAGATGATGACTTCCATTTTTTCCCGACCGACACTTCTCGTGATGAACCGATATCGGAAGAAAACCAAAGCGTTTGGTCATTAATTCCTGAACTCAGAGAAAAATTGCATGTGCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCGAAACGTTGCAGGGTCTACAAATCCAGAGCTAATTGAAGCCGAATCCAAAAAAAGAGGTGGCTGTGTGATATCTCATACTCCTGGAGCCGGAAAAACTTTTCTCATCATCGCTTTTCTTGTTAGCTACCTGAAGTTATTCCCGGGGAAGAGACCTCTAGTTCTTGCTCCAAAAACTACGCTCTATACTTGGTATAAAGAATTTATCAAGTGGGAGATTCCTATACCGGTGTACTTGATTCATGGTCGTAGAACCTATAGGGTGTTCAAGCAGAATACAGTTGCTACTCTTCCTGGAGTTCCCAAGCCTACCGATGATGTCAAGCATGTTTTGGATTGCCTTGAGAAGATCCAAAAATGGCATTCACATCCGAGTGTTCTAATCATGGGCTACACTTCGTTTTTAACATTGATGCGAGAGGATTCAAAGTTTGCACACCGAAAGTTTATGGCTCAAGTGTTGAGGGAAAGTCCTGGACTCTTGGTACTTGATGAAGGTCACAACCCTAGAAGTACCAAATCAAGGTTGCGAAAATGTTTGATGAAAGTGCAAACCGAATTGAGAATATTGCTTTCCGGTACTTTGTTTCAAAATAATTTCTGCGAATACTTCAACACTCTATGCTTGGCAAGACCGAAATTCCCTCACGAAGTGTTGAAAGCATTAGACCCTAAATACAAGAGGAAAAGGAAAGGAGTAGGCCAAAAAGGAGCAGAAAAGGCGCAATATTTGATCGAGTCACGGGCAAGAAAATTCTTCTTAGATACAATCGCTAGGAAAATTGACTCTAATGTTGGAGAGGAAAGAATTCAAGGATTAAACATGTTGAGAAATGTGACAAATGGTTTTATCGATGTTTATGAAGCAGGAAGTTCTGATGGTTTACCAGGTTTACAAATTTATACACTGCTAATGAATACAACCGATATACAGCATGAGATTCTGCAGAAACTTCACAGCGACATGTTTAAGTGCAGTGGATACCCTCTCGAGTTAGAGCTTTTGATAACACTTGGATCAATACATCCTTGGCTGGTAAAAACTGCGGTGTGTTCTCAGAAATTTTTAACAAAGGAGCAATTGAGTGATCTTGATAAGTACAAGTTTGATTTGAAAATAGGTTCAAAAGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTCAAGAACGAAAAGGTTCTTATCTTTTGCCACAACATTGCGCCTGTTCGCTTATTTCAAGAATATTTCGAGAAGTATTTTGGATGGCAAAAAGGCCGTGAAGTTTTAGTACTAACCGGGGAACTCGAGCTCTTTGAACGTGGGAAAATAATGGATAAATTTGAGGAGCCTGGTGGAGTATCAAAGATACTACTTGCTTCAATCACAGCTTGTGCCGAAGGAATTAGTTTGACAGCTGCATCTCGTGTGATCATGTTGGATTCCGAGTGGAACCCTTCGAAAACGAAGCAAGCTATTGCACGTGCGTTTCGTCCTGGTCAGCAGAAAATGGTTTATGTTTATCAGCTCTTGGTGACAGGTTCGTTGGAGGAAGATAAGTACCGAAGAACCACTTGGAAAGAGTGGGTGTCGAGCATGATTTTCAGCGAGGCGTTTGTCGAGGATCCTTCTCGTTGGCAAGCTGAGAAGATTGAAGATGATATTCTAAGGGAAATGGTTGAGGAGGATAAGTCTAAATCATTCCATATGATCATGAAGAATGAAAAGGCTTCAACAAAAACATAA

Protein sequence

>Msa0732380

MIDKQFMCADEALTVSGNFCAKSAAEVAHIQHWQSQTMMNRKRRLNESKNSFNSDPFEAVIFGSWHPVEFIKVKSGSMSIHFTDNHHMVMDKGALSDIRIRSRKATVSDCSCFLRPGIDICVLSPPQRAGDSVGLNLEPVWADARISSIQRKPHGSECSCQFFVNFYVEQGSLGLEMRTLCKDVKVFGLNQISILQKIEHSPCENQPHRWSSSEDCSSLPNTKLLLGKFLIDLSWLVVTSVVKNVSFCARSVENKMVYQILGGDSSNSSSSNTESHIDVIGFKTDDGMLVPIVSQVAITNTKRADHARESRADEASSSYNVDGLRRSKRRHVQPERYVGCEVKELDVGTFRNMPPVRIETSKAVVDEMSLPLSFLFRLPQSSPEKGAIKCQKASKPNACRELLVYNRRAKTQKGKKTCGGVDQKEHKNPLAIIPLPDQDADPIAVEHYDPNGNVARSHEHQSRDITSQYSHLVNNPKPRKNINLLDDPAKADDAEKNDHVSSRCQFFGSTKLQRKSTGSLDDMDLGNRWEGIKRKSKTGFHEGTYRSTHLRNNGEGRSHNYKDRTLNAAAYKSLIHSYLQNINTIPVIEEPPITDQWKKCNTTNGVGQNVETEISHGEDDVEKAEMDMLWKELEVSLASSYFDDSEVSNAIVLAEPEENLEEVCEHDNRLDEEIGIYCCRCGFVTTHIRDVNPIFVENSVWRQEEKQCDGEDKEEPTKDDEDDDFHFFPTDTSRDEPISEENQSVWSLIPELREKLHVHQKKAFEFLWRNVAGSTNPELIEAESKKRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQNTVATLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKFMAQVLRESPGLLVLDEGHNPRSTKSRLRKCLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFPHEVLKALDPKYKRKRKGVGQKGAEKAQYLIESRARKFFLDTIARKIDSNVGEERIQGLNMLRNVTNGFIDVYEAGSSDGLPGLQIYTLLMNTTDIQHEILQKLHSDMFKCSGYPLELELLITLGSIHPWLVKTAVCSQKFLTKEQLSDLDKYKFDLKIGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVRLFQEYFEKYFGWQKGREVLVLTGELELFERGKIMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSRWQAEKIEDDILREMVEEDKSKSFHMIMKNEKASTKT*