Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734160 | XP_003615614.1 | 94.911 | 393 | 20 | 0 | 1 | 393 | 1 | 393 | 0.0 | 711 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734160 | sp|Q9SD61|C3H42_ARATH | 78.182 | 165 | 36 | 0 | 1 | 165 | 1 | 165 | 1.50e-93 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734160 | G7K6D4 | 94.911 | 393 | 20 | 0 | 1 | 393 | 1 | 393 | 0.0 | 711 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0734160 | Msa0853120 | 0.850941 | 1.226136e-60 | -8.615850e-47 |
| Msa0376630 | Msa0734160 | 0.800713 | 1.266675e-48 | -8.615850e-47 |
| Msa0267920 | Msa0734160 | 0.805284 | 1.437891e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734160 | MtrunA17_Chr5g0429721 | 94.911 | 393 | 20 | 0 | 1 | 393 | 1 | 393 | 0.0 | 711 |
| Msa0734160 | MtrunA17_Chr5g0429731 | 89.474 | 76 | 8 | 0 | 1 | 76 | 54 | 129 | 2.24e-42 | 149 |
| Msa0734160 | MtrunA17_Chr5g0429941 | 43.421 | 76 | 43 | 0 | 34 | 109 | 14 | 89 | 7.75e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734160 | AT3G47120.2 | 66.827 | 208 | 67 | 1 | 1 | 206 | 1 | 208 | 1.28e-96 | 291 |
| Msa0734160 | AT3G47120.1 | 78.182 | 165 | 36 | 0 | 1 | 165 | 1 | 165 | 1.52e-94 | 287 |
| Msa0734160 | AT4G36690.4 | 30.534 | 131 | 86 | 2 | 18 | 148 | 321 | 446 | 5.18e-13 | 70.9 |
| Msa0734160 | AT4G36690.1 | 30.534 | 131 | 86 | 2 | 18 | 148 | 343 | 468 | 5.53e-13 | 70.9 |
| Msa0734160 | AT4G36690.3 | 30.534 | 131 | 86 | 2 | 18 | 148 | 343 | 468 | 6.10e-13 | 70.9 |
| Msa0734160 | AT4G36690.2 | 30.534 | 131 | 86 | 2 | 18 | 148 | 343 | 468 | 8.08e-13 | 70.5 |
| Msa0734160 | AT5G19960.1 | 35.443 | 79 | 50 | 1 | 34 | 112 | 5 | 82 | 1.19e-11 | 65.9 |
| Msa0734160 | AT5G64200.2 | 42.105 | 76 | 44 | 0 | 34 | 109 | 14 | 89 | 4.74e-11 | 63.9 |
| Msa0734160 | AT5G64200.1 | 42.105 | 76 | 44 | 0 | 34 | 109 | 14 | 89 | 4.74e-11 | 63.9 |
| Msa0734160 | AT1G60900.1 | 38.889 | 72 | 44 | 0 | 38 | 109 | 377 | 448 | 7.50e-11 | 64.3 |
Find 127 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTTTCAGGTAGGATTATT+AGG | 0.141562 | 5_1:-47789946 | Msa0734160:CDS |
| CCTTAGAATAAGTGAAAATT+AGG | 0.145997 | 5_1:+47790980 | None:intergenic |
| GCCATACCTTCTTTCTTTAT+TGG | 0.146639 | 5_1:+47787223 | None:intergenic |
| AGGCGGGATGTTGATGATTT+TGG | 0.164510 | 5_1:-47786801 | Msa0734160:CDS |
| CTGAATGGAGCTCAGGTTTC+AGG | 0.203125 | 5_1:-47789959 | Msa0734160:CDS |
| CCATACCTTCTTTCTTTATT+GGG | 0.216137 | 5_1:+47787224 | None:intergenic |
| GTCAGAATCATTTCTTCCTT+TGG | 0.232167 | 5_1:+47786632 | None:intergenic |
| CTGAGCCAAGAGATCATAAA+AGG | 0.251327 | 5_1:-47786911 | Msa0734160:CDS |
| GAATCTCTATCTCTAGTTTC+TGG | 0.272752 | 5_1:+47787179 | None:intergenic |
| CTCTCTTCTATCATTTCTCT+TGG | 0.283326 | 5_1:+47787112 | None:intergenic |
| CTTCATGCATTCAATATATA+TGG | 0.290550 | 5_1:-47786365 | Msa0734160:three_prime_UTR |
| CTTCTATCATTTCTCTTGGA+TGG | 0.294203 | 5_1:+47787116 | None:intergenic |
| CAAGGAATGGTTATGATGAT+AGG | 0.321506 | 5_1:-47786938 | Msa0734160:CDS |
| CTCCTTTGCCGATCTTCTCT+TGG | 0.324973 | 5_1:+47786975 | None:intergenic |
| CACGAGTACACTCCCCTCTT+TGG | 0.331022 | 5_1:+47789831 | None:intergenic |
| GGTTTCAGGTAGGATTATTA+GGG | 0.354453 | 5_1:-47789945 | Msa0734160:CDS |
| TTCTATCATTTCTCTTGGAT+GGG | 0.358687 | 5_1:+47787117 | None:intergenic |
| GTTGTGAGTAATTGTCCTTT+TGG | 0.362803 | 5_1:-47786445 | Msa0734160:three_prime_UTR |
| TCTCAATTGCCATTACCTTC+TGG | 0.363694 | 5_1:+47786590 | None:intergenic |
| TTTAGGTTATCAAATGTCAT+TGG | 0.383978 | 5_1:+47786527 | None:intergenic |
| TTGTAGAGAGCTGCAAATAC+TGG | 0.385773 | 5_1:-47787296 | Msa0734160:intron |
| ACATAAGCGAAGACGCTTCA+TGG | 0.386973 | 5_1:-47790692 | Msa0734160:CDS |
| ACTTCGCTGGTAGTAGTAGT+AGG | 0.388711 | 5_1:-47791014 | Msa0734160:five_prime_UTR |
| AAGAGGAAGCAAAGCAGAAA+AGG | 0.403194 | 5_1:-47789880 | Msa0734160:CDS |
| AGGTAATGGCAATTGAGATC+TGG | 0.409242 | 5_1:-47786585 | Msa0734160:exon |
| TTCAATATATATGGAGCATA+TGG | 0.413613 | 5_1:-47786356 | Msa0734160:three_prime_UTR |
| AAGTGATTATCAATGTTAAT+AGG | 0.413640 | 5_1:+47786280 | None:intergenic |
| GGAGGCCCGTGGTGTTTGTC+GGG | 0.415526 | 5_1:-47789858 | Msa0734160:CDS |
| CTAGTTTCTGGAATACGATC+TGG | 0.419183 | 5_1:+47787191 | None:intergenic |
| CAAGAGAAACACACGGTAGC+AGG | 0.422317 | 5_1:-47786770 | Msa0734160:CDS |
| TGAGTTTGATCAATATTGTT+TGG | 0.424643 | 5_1:-47786417 | Msa0734160:three_prime_UTR |
| GGGAGGCCCGTGGTGTTTGT+CGG | 0.430962 | 5_1:-47789859 | Msa0734160:CDS |
| TCATGGACAAGAATGGGTAT+TGG | 0.436076 | 5_1:-47786557 | Msa0734160:three_prime_UTR |
| CTAAAAGCTGCTTCGCGGAC+AGG | 0.437443 | 5_1:+47791056 | None:intergenic |
| CTTAGAATAAGTGAAAATTA+GGG | 0.447377 | 5_1:+47790981 | None:intergenic |
| GGTCAAGAGAAGATCATGAT+AGG | 0.447825 | 5_1:-47786701 | Msa0734160:CDS |
| TCATCAACATCCCGCCTACT+TGG | 0.449138 | 5_1:+47786807 | None:intergenic |
| ATTGAGATCTGGGTTTATCA+TGG | 0.450996 | 5_1:-47786574 | Msa0734160:three_prime_UTR |
| GGTAATGGCAATTGAGATCT+GGG | 0.458021 | 5_1:-47786584 | Msa0734160:exon |
| TGATCAGAATCTCTTGACTT+AGG | 0.458844 | 5_1:+47786846 | None:intergenic |
| CCCAATAAAGAAAGAAGGTA+TGG | 0.462602 | 5_1:-47787224 | Msa0734160:CDS |
| GGTGATAACGGGATTGCAAA+AGG | 0.465841 | 5_1:-47787269 | Msa0734160:CDS |
| CTTGTAAGAGACAAAGGTAC+TGG | 0.467775 | 5_1:-47790377 | Msa0734160:CDS |
| GAGAGCTGCAAATACTGGTT+GGG | 0.469783 | 5_1:-47787291 | Msa0734160:CDS |
| ATACTGGTTGGGGTGATAAC+GGG | 0.475497 | 5_1:-47787280 | Msa0734160:CDS |
| ATCAAACTCACCACTCCAAA+AGG | 0.476231 | 5_1:+47786430 | None:intergenic |
| AATACTGGTTGGGGTGATAA+CGG | 0.477693 | 5_1:-47787281 | Msa0734160:CDS |
| GGGTTTATCATGGACAAGAA+TGG | 0.480340 | 5_1:-47786564 | Msa0734160:three_prime_UTR |
| GGGGAGTGTACTCGTGGAGC+TGG | 0.482249 | 5_1:-47789824 | Msa0734160:CDS |
| GGTTTATCATGGACAAGAAT+GGG | 0.484881 | 5_1:-47786563 | Msa0734160:three_prime_UTR |
| TCATCATCTTGATAGTCTCT+TGG | 0.486677 | 5_1:+47787011 | None:intergenic |
| GTGATAACGGGATTGCAAAA+GGG | 0.493742 | 5_1:-47787268 | Msa0734160:CDS |
| GAGATCATAAAAGGGAAGAC+AGG | 0.495058 | 5_1:-47786902 | Msa0734160:CDS |
| AGATGGCGATAGTAAATTTG+TGG | 0.496993 | 5_1:-47787069 | Msa0734160:CDS |
| GGAGAGAAGAAATGAGATCA+AGG | 0.498844 | 5_1:-47786956 | Msa0734160:CDS |
| TGCGCTTCACCAGTGTTAGC+GGG | 0.500198 | 5_1:+47790748 | None:intergenic |
| ATCGTCTAAAAGCTGCTTCG+CGG | 0.503560 | 5_1:+47791051 | None:intergenic |
| GATGGAGGAGGAAGATGAAG+AGG | 0.505631 | 5_1:-47789897 | Msa0734160:CDS |
| AGATAATCTGAATGGAGCTC+AGG | 0.511594 | 5_1:-47789966 | Msa0734160:CDS |
| TTTGTCGGGCTTTCCAAAGA+GGG | 0.528141 | 5_1:-47789844 | Msa0734160:CDS |
| AACTTTGGAAAGTAGGGAAG+GGG | 0.531412 | 5_1:-47791110 | Msa0734160:five_prime_UTR |
| TTCAGGTAGGATTATTAGGG+TGG | 0.532632 | 5_1:-47789942 | Msa0734160:CDS |
| GATGGCGATAGTAAATTTGT+GGG | 0.534981 | 5_1:-47787068 | Msa0734160:CDS |
| AAGGAATGGTTATGATGATA+GGG | 0.535419 | 5_1:-47786937 | Msa0734160:CDS |
| CTGACCAAAGAGAAGAAAAG+AGG | 0.537828 | 5_1:-47786614 | Msa0734160:CDS |
| TAAATATAAGAAGATGGAGG+AGG | 0.542000 | 5_1:-47789909 | Msa0734160:CDS |
| GCTGCTTCGCGGACAGGCGA+AGG | 0.543106 | 5_1:+47791062 | None:intergenic |
| TGATAACGGGATTGCAAAAG+GGG | 0.543460 | 5_1:-47787267 | Msa0734160:CDS |
| GAGAGGAAAAGATGTTGCGA+AGG | 0.544047 | 5_1:-47787094 | Msa0734160:CDS |
| TGTTGATAAATATAAGAAGA+TGG | 0.544702 | 5_1:-47789915 | Msa0734160:CDS |
| ATGCGCTTCACCAGTGTTAG+CGG | 0.545822 | 5_1:+47790747 | None:intergenic |
| TTCGTTGATCTTCATATGCT+AGG | 0.545883 | 5_1:+47790333 | None:intergenic |
| GGGGATAATGACAAATATGA+TGG | 0.546189 | 5_1:-47787248 | Msa0734160:CDS |
| CCTTTGCAGAAGCACTTCGC+TGG | 0.552376 | 5_1:-47791027 | Msa0734160:five_prime_UTR |
| CGAAGCACTAATCTTGCTGT+TGG | 0.553561 | 5_1:-47790314 | Msa0734160:intron |
| AGAGGAAGCAAAGCAGAAAA+GGG | 0.556582 | 5_1:-47789879 | Msa0734160:CDS |
| AACAATTGCCAAGAGAAGAT+CGG | 0.556675 | 5_1:-47786983 | Msa0734160:CDS |
| AGATAAAAGACCAAGTAGGC+GGG | 0.557243 | 5_1:-47786817 | Msa0734160:CDS |
| CACACGGTAGCAGGGAAGAG+AGG | 0.558042 | 5_1:-47786761 | Msa0734160:CDS |
| ATGGTCCCAATAAAGAAAGA+AGG | 0.560069 | 5_1:-47787229 | Msa0734160:CDS |
| AAAACTTTGGAAAGTAGGGA+AGG | 0.561074 | 5_1:-47791112 | Msa0734160:five_prime_UTR |
| AGAGAGCTGCAAATACTGGT+TGG | 0.561675 | 5_1:-47787292 | Msa0734160:CDS |
| GAGAAGAAAAGAGGTCCAGA+AGG | 0.562940 | 5_1:-47786605 | Msa0734160:CDS |
| ATTCCCTTCGATTTCACCGA+GGG | 0.563908 | 5_1:-47790627 | Msa0734160:CDS |
| GAAGAAATGAGATCAAGGAA+TGG | 0.564228 | 5_1:-47786951 | Msa0734160:CDS |
| ATCATATAACAAAATGACTA+CGG | 0.568139 | 5_1:+47786479 | None:intergenic |
| AAGAGAAACACACGGTAGCA+GGG | 0.569250 | 5_1:-47786769 | Msa0734160:CDS |
| TGAGCCAAGAGATCATAAAA+GGG | 0.569269 | 5_1:-47786910 | Msa0734160:CDS |
| ATTAATCTTGTAAGAGACAA+AGG | 0.574059 | 5_1:-47790383 | Msa0734160:CDS |
| CTTCGCTGGTAGTAGTAGTA+GGG | 0.575936 | 5_1:-47791013 | Msa0734160:five_prime_UTR |
| AAAAGAGGTCCAGAAGGTAA+TGG | 0.576819 | 5_1:-47786599 | Msa0734160:exon |
| AATGCATGAAGCATTAGCAT+TGG | 0.577218 | 5_1:+47786377 | None:intergenic |
| GTTTGTCGGGCTTTCCAAAG+AGG | 0.577376 | 5_1:-47789845 | Msa0734160:CDS |
| AAACTTTGGAAAGTAGGGAA+GGG | 0.579434 | 5_1:-47791111 | Msa0734160:five_prime_UTR |
| CAAAGGTACTGGAAAATCGA+AGG | 0.580701 | 5_1:-47790366 | Msa0734160:CDS |
| CCAGCGAAGTGCTTCTGCAA+AGG | 0.581907 | 5_1:+47791027 | None:intergenic |
| ATCACCCTCGGTGAAATCGA+AGG | 0.587004 | 5_1:+47790623 | None:intergenic |
| AGCATTGGTTGTTGACACAA+TGG | 0.587306 | 5_1:+47786392 | None:intergenic |
| AGAGCTGCAAATACTGGTTG+GGG | 0.591634 | 5_1:-47787290 | Msa0734160:CDS |
| TGTGTCACAGATAATCTGAA+TGG | 0.593295 | 5_1:-47789974 | Msa0734160:intron |
| CAGAGCCCGTGAAAATGAGA+TGG | 0.593419 | 5_1:-47787150 | Msa0734160:CDS |
| GAGAAGATAAAAGACCAAGT+AGG | 0.594924 | 5_1:-47786821 | Msa0734160:CDS |
| TGCCAAGAGAAGATCGGCAA+AGG | 0.602431 | 5_1:-47786977 | Msa0734160:CDS |
| AAGATGTTGCGAAGGCAAGA+TGG | 0.607367 | 5_1:-47787086 | Msa0734160:CDS |
| TCATGATCTTCTCTTGACCT+CGG | 0.607853 | 5_1:+47786705 | None:intergenic |
| TTGTCGGGCTTTCCAAAGAG+GGG | 0.608582 | 5_1:-47789843 | Msa0734160:CDS |
| TCACCCTCGGTGAAATCGAA+GGG | 0.609691 | 5_1:+47790624 | None:intergenic |
| GGAAGCAAAGCAGAAAAGGG+AGG | 0.609716 | 5_1:-47789876 | Msa0734160:CDS |
| CAAGAGAAATGATAGAAGAG+AGG | 0.610710 | 5_1:-47787111 | Msa0734160:CDS |
| AAAGGTACTGGAAAATCGAA+GGG | 0.617678 | 5_1:-47790365 | Msa0734160:CDS |
| AGACATGAACCCGCTAACAC+TGG | 0.618621 | 5_1:-47790757 | Msa0734160:exon |
| AAGATAAAAGACCAAGTAGG+CGG | 0.618731 | 5_1:-47786818 | Msa0734160:CDS |
| GAAAGCCCGACAAACACCAC+GGG | 0.618848 | 5_1:+47789853 | None:intergenic |
| ATCATAAAAGGGAAGACAGG+AGG | 0.621506 | 5_1:-47786899 | Msa0734160:CDS |
| AACAGCGATCACATCACCCT+CGG | 0.630240 | 5_1:+47790611 | None:intergenic |
| ACTGATCGATCTGAATCCAA+AGG | 0.632548 | 5_1:-47786648 | Msa0734160:CDS |
| CAAAGAGGGGAGTGTACTCG+TGG | 0.640039 | 5_1:-47789830 | Msa0734160:CDS |
| GTTGGTGATATCCAGGTATG+GGG | 0.640744 | 5_1:-47790417 | Msa0734160:intron |
| GGAAAGCCCGACAAACACCA+CGG | 0.645236 | 5_1:+47789852 | None:intergenic |
| GGTGATATCCAGGTATGGGG+AGG | 0.647940 | 5_1:-47790414 | Msa0734160:intron |
| ACCACCGACGAAAACATAAG+CGG | 0.664303 | 5_1:+47790650 | None:intergenic |
| TGATAAATATAAGAAGATGG+AGG | 0.665787 | 5_1:-47789912 | Msa0734160:CDS |
| ATGGAGCTCAGGTTTCAGGT+AGG | 0.666007 | 5_1:-47789955 | Msa0734160:CDS |
| AAGCAGAAAAGGGAGGCCCG+TGG | 0.687506 | 5_1:-47789869 | Msa0734160:CDS |
| TATTCCCTTCGATTTCACCG+AGG | 0.720373 | 5_1:-47790628 | Msa0734160:CDS |
| CTGACGATGAATCTATGCCG+AGG | 0.725370 | 5_1:-47786722 | Msa0734160:CDS |
| AGCAAGTCAAGAGAAACACA+CGG | 0.752914 | 5_1:-47786777 | Msa0734160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTAATTTAATTTAA+TGG | - | chr5_1:47788948-47788967 | Msa0734160:intron | 0.0% |
| !!! | TGGATATTATTTATATTTTA+AGG | - | chr5_1:47788232-47788251 | Msa0734160:intron | 10.0% |
| !! | TTCAAAAAATAATCAAATAT+CGG | - | chr5_1:47788589-47788608 | Msa0734160:intron | 10.0% |
| !!! | TTTTAATTTAATTTAATGGT+TGG | - | chr5_1:47788952-47788971 | Msa0734160:intron | 10.0% |
| !!! | TTTATAAACATTTCATTTTT+TGG | + | chr5_1:47791091-47791110 | None:intergenic | 10.0% |
| !!! | TTTAATTATCTGTTTTTTTC+AGG | - | chr5_1:47787369-47787388 | Msa0734160:intron | 15.0% |
| !!! | TTAATTATCTGTTTTTTTCA+GGG | - | chr5_1:47787370-47787389 | Msa0734160:intron | 15.0% |
| !!! | CATTGATTTTAATTGTTTAT+TGG | - | chr5_1:47787671-47787690 | Msa0734160:intron | 15.0% |
| !! | TATAAATAATATCCACTATA+AGG | + | chr5_1:47788227-47788246 | None:intergenic | 15.0% |
| !!! | ACCAAAATGTTTTAAAAATA+GGG | + | chr5_1:47788447-47788466 | None:intergenic | 15.0% |
| !!! | AAAAAAAAACTTTGGAAAGT+AGG | - | chr5_1:47786286-47786305 | Msa0734160:three_prime_UTR | 20.0% |
| !!! | AAAAAAAACTTTGGAAAGTA+GGG | - | chr5_1:47786287-47786306 | Msa0734160:three_prime_UTR | 20.0% |
| !! | CTTAGAATAAGTGAAAATTA+GGG | + | chr5_1:47786425-47786444 | None:intergenic | 20.0% |
| !!! | ATTGATTGATAGTATCTTTA+TGG | - | chr5_1:47786894-47786913 | Msa0734160:CDS | 20.0% |
| !!! | ACAATATAGTTTAGAATTAC+AGG | + | chr5_1:47787128-47787147 | None:intergenic | 20.0% |
| !! | TACTTACAAAAGATACATTA+GGG | + | chr5_1:47787197-47787216 | None:intergenic | 20.0% |
| !! | TTACTTACAAAAGATACATT+AGG | + | chr5_1:47787198-47787217 | None:intergenic | 20.0% |
| !!! | ATCTTTTGTAAGTAATTGTA+TGG | - | chr5_1:47787203-47787222 | Msa0734160:CDS | 20.0% |
| !!! | TGTTGATAAATATAAGAAGA+TGG | - | chr5_1:47787488-47787507 | Msa0734160:intron | 20.0% |
| !! | TGATAATTCAAAATACTTTG+TGG | + | chr5_1:47787653-47787672 | None:intergenic | 20.0% |
| !!! | GTGATATTATTTTCATGATT+AGG | - | chr5_1:47788159-47788178 | Msa0734160:intron | 20.0% |
| !! | TGTCTAAATTATCTAACATT+TGG | + | chr5_1:47788189-47788208 | None:intergenic | 20.0% |
| !!! | TTTTAAGGTAAATGATAACT+AGG | - | chr5_1:47788247-47788266 | Msa0734160:intron | 20.0% |
| !!! | TTTAAGGTAAATGATAACTA+GGG | - | chr5_1:47788248-47788267 | Msa0734160:intron | 20.0% |
| !! | TTTCAACTATAATCAAATAG+CGG | + | chr5_1:47788411-47788430 | None:intergenic | 20.0% |
| !!! | TTTTAAAAATAGGGTCAATT+TGG | + | chr5_1:47788438-47788457 | None:intergenic | 20.0% |
| !!! | ACCCTATTTTTAAAACATTT+TGG | - | chr5_1:47788443-47788462 | Msa0734160:intron | 20.0% |
| !!! | CACCAAAATGTTTTAAAAAT+AGG | + | chr5_1:47788448-47788467 | None:intergenic | 20.0% |
| !! | TGAACAAATTACATGAATAA+TGG | + | chr5_1:47788573-47788592 | None:intergenic | 20.0% |
| !! | ATTGAAAAGTTCTTCTTTAT+AGG | + | chr5_1:47788778-47788797 | None:intergenic | 20.0% |
| !!! | AATATATTTTTGCTAATCAG+TGG | + | chr5_1:47788824-47788843 | None:intergenic | 20.0% |
| !!! | ACTACTTTTACTTTAATGTA+TGG | + | chr5_1:47788866-47788885 | None:intergenic | 20.0% |
| !!! | TATGTTATAAAATTTGCTGT+TGG | - | chr5_1:47789996-47790015 | Msa0734160:intron | 20.0% |
| !! | ATCATATAACAAAATGACTA+CGG | + | chr5_1:47790927-47790946 | None:intergenic | 20.0% |
| !! | AAGTGATTATCAATGTTAAT+AGG | + | chr5_1:47791126-47791145 | None:intergenic | 20.0% |
| ! | CCTTAGAATAAGTGAAAATT+AGG | + | chr5_1:47786426-47786445 | None:intergenic | 25.0% |
| !! | CCTAATTTTCACTTATTCTA+AGG | - | chr5_1:47786423-47786442 | Msa0734160:three_prime_UTR | 25.0% |
| ! | TGATAACAAACGTTAAGAAT+GGG | + | chr5_1:47786587-47786606 | None:intergenic | 25.0% |
| !!! | TTTGAAGATGACAAGTTTTT+TGG | - | chr5_1:47786962-47786981 | Msa0734160:CDS | 25.0% |
| ! | ATTAATCTTGTAAGAGACAA+AGG | - | chr5_1:47787020-47787039 | Msa0734160:CDS | 25.0% |
| ! | ACATCATTCAATAGTCAATT+CGG | + | chr5_1:47787261-47787280 | None:intergenic | 25.0% |
| !!! | TTGTAGTTTTGATACATTCA+AGG | - | chr5_1:47787295-47787314 | Msa0734160:intron | 25.0% |
| ! | TGATAAATATAAGAAGATGG+AGG | - | chr5_1:47787491-47787510 | Msa0734160:intron | 25.0% |
| ! | AAAAGTCAAACTTCAATGTT+CGG | + | chr5_1:47787723-47787742 | None:intergenic | 25.0% |
| ! | ACGAAGAAATTCATTAAAAC+AGG | + | chr5_1:47788046-47788065 | None:intergenic | 25.0% |
| !! | GTACACATACACATAATTTT+TGG | - | chr5_1:47788064-47788083 | Msa0734160:intron | 25.0% |
| ! | ATTAGGTGAAATAACTGTAT+AGG | + | chr5_1:47788093-47788112 | None:intergenic | 25.0% |
| ! | GCATTATATGAAAAGCTATT+AGG | + | chr5_1:47788110-47788129 | None:intergenic | 25.0% |
| ! | GTAGTTATATAACCTTATAG+TGG | - | chr5_1:47788212-47788231 | Msa0734160:intron | 25.0% |
| ! | GGATTGATAAAATGACAATT+AGG | - | chr5_1:47788973-47788992 | Msa0734160:intron | 25.0% |
| ! | CATATATAGTTCATCTTGAA+AGG | - | chr5_1:47789050-47789069 | Msa0734160:intron | 25.0% |
| ! | CATTTCTTTCAAGATGAATT+TGG | + | chr5_1:47789112-47789131 | None:intergenic | 25.0% |
| ! | AAGAAATGAATATATTCCAG+AGG | - | chr5_1:47789124-47789143 | Msa0734160:intron | 25.0% |
| ! | ACGTAGAAAAATAATATTCC+TGG | - | chr5_1:47789317-47789336 | Msa0734160:intron | 25.0% |
| ! | GAAAAATAATATTCCTGGAA+AGG | - | chr5_1:47789322-47789341 | Msa0734160:intron | 25.0% |
| ! | TCAAGTAATAAGAACTTAGA+AGG | + | chr5_1:47789810-47789829 | None:intergenic | 25.0% |
| !! | TTTAGGTTATCAAATGTCAT+TGG | + | chr5_1:47790879-47790898 | None:intergenic | 25.0% |
| ! | TGAGTTTGATCAATATTGTT+TGG | - | chr5_1:47790986-47791005 | Msa0734160:five_prime_UTR | 25.0% |
| ! | CTTCATGCATTCAATATATA+TGG | - | chr5_1:47791038-47791057 | Msa0734160:five_prime_UTR | 25.0% |
| ! | TTCAATATATATGGAGCATA+TGG | - | chr5_1:47791047-47791066 | Msa0734160:five_prime_UTR | 25.0% |
| GTGATAACAAACGTTAAGAA+TGG | + | chr5_1:47786588-47786607 | None:intergenic | 30.0% | |
| TGATAGTATCTTTATGGTGT+TGG | - | chr5_1:47786900-47786919 | Msa0734160:CDS | 30.0% | |
| TTGATTATGTATGTTATCGC+TGG | - | chr5_1:47787147-47787166 | Msa0734160:CDS | 30.0% | |
| ACAACATGACACACATTTAA+GGG | - | chr5_1:47787327-47787346 | Msa0734160:intron | 30.0% | |
| TAAATATAAGAAGATGGAGG+AGG | - | chr5_1:47787494-47787513 | Msa0734160:intron | 30.0% | |
| ! | GTTGTACACAAGTTTTTCTT+AGG | - | chr5_1:47787847-47787866 | Msa0734160:intron | 30.0% |
| ACATGATTCTACAGTCAAAT+TGG | + | chr5_1:47788141-47788160 | None:intergenic | 30.0% | |
| TGAAAGTTTGTATTGAGAAG+TGG | - | chr5_1:47788739-47788758 | Msa0734160:intron | 30.0% | |
| TATGCTGGTAATACATGAAT+TGG | + | chr5_1:47789253-47789272 | None:intergenic | 30.0% | |
| ! | AGAGGAAGAATTTTATGTGA+AGG | - | chr5_1:47789389-47789408 | Msa0734160:intron | 30.0% |
| ! | GAGGAAGAATTTTATGTGAA+GGG | - | chr5_1:47789390-47789409 | Msa0734160:intron | 30.0% |
| ! | AGGAAGAATTTTATGTGAAG+GGG | - | chr5_1:47789391-47789410 | Msa0734160:intron | 30.0% |
| ACTTCTCTGAATATGTTCTT+AGG | - | chr5_1:47789611-47789630 | Msa0734160:intron | 30.0% | |
| CTTCTCTGAATATGTTCTTA+GGG | - | chr5_1:47789612-47789631 | Msa0734160:intron | 30.0% | |
| TTCGTTGTGAGTTATAACTT+GGG | + | chr5_1:47789725-47789744 | None:intergenic | 30.0% | |
| TTTCGTTGTGAGTTATAACT+TGG | + | chr5_1:47789726-47789745 | None:intergenic | 30.0% | |
| ! | GCATAGTTTATACTCAGTTT+TGG | - | chr5_1:47789943-47789962 | Msa0734160:CDS | 30.0% |
| AGAACTGAAAACACACAATA+AGG | + | chr5_1:47790067-47790086 | None:intergenic | 30.0% | |
| CCATACCTTCTTTCTTTATT+GGG | + | chr5_1:47790182-47790201 | None:intergenic | 30.0% | |
| ! | TAATTCCATCTCATTTTCAC+GGG | + | chr5_1:47790261-47790280 | None:intergenic | 30.0% |
| ! | CTAATTCCATCTCATTTTCA+CGG | + | chr5_1:47790262-47790281 | None:intergenic | 30.0% |
| TTCTATCATTTCTCTTGGAT+GGG | + | chr5_1:47790289-47790308 | None:intergenic | 30.0% | |
| AAGGAATGGTTATGATGATA+GGG | - | chr5_1:47790466-47790485 | Msa0734160:intron | 30.0% | |
| ! | TAACTAACACGCAACATTTT+AGG | + | chr5_1:47790896-47790915 | None:intergenic | 30.0% |
| ! | AAAACTTTGGAAAGTAGGGA+AGG | - | chr5_1:47786291-47786310 | Msa0734160:three_prime_UTR | 35.0% |
| ! | AAACTTTGGAAAGTAGGGAA+GGG | - | chr5_1:47786292-47786311 | Msa0734160:three_prime_UTR | 35.0% |
| ! | ACAAACGTTAAGAATGGGTT+GGG | + | chr5_1:47786582-47786601 | None:intergenic | 35.0% |
| AACAAACGTTAAGAATGGGT+TGG | + | chr5_1:47786583-47786602 | None:intergenic | 35.0% | |
| CAGTGCAACACTGAAAATTA+GGG | + | chr5_1:47786616-47786635 | None:intergenic | 35.0% | |
| ACAGTGCAACACTGAAAATT+AGG | + | chr5_1:47786617-47786636 | None:intergenic | 35.0% | |
| ! | ATTTTCAGTGTTGCACTGTT+AGG | - | chr5_1:47786618-47786637 | Msa0734160:CDS | 35.0% |
| ! | CACACAAAGTTTTACATCGA+CGG | + | chr5_1:47786874-47786893 | None:intergenic | 35.0% |
| !!! | GATGACAAGTTTTTTGGTGT+TGG | - | chr5_1:47786968-47786987 | Msa0734160:CDS | 35.0% |
| !! | AAAGGTACTGGAAAATCGAA+GGG | - | chr5_1:47787038-47787057 | Msa0734160:CDS | 35.0% |
| TTCGTTGATCTTCATATGCT+AGG | + | chr5_1:47787073-47787092 | None:intergenic | 35.0% | |
| GACAACATGACACACATTTA+AGG | - | chr5_1:47787326-47787345 | Msa0734160:intron | 35.0% | |
| CTGAATTGCTTTGCAATGTT+TGG | - | chr5_1:47787401-47787420 | Msa0734160:intron | 35.0% | |
| TGTGTCACAGATAATCTGAA+TGG | - | chr5_1:47787429-47787448 | Msa0734160:intron | 35.0% | |
| ! | AGGTTTCAGGTAGGATTATT+AGG | - | chr5_1:47787457-47787476 | Msa0734160:intron | 35.0% |
| ! | GGTTTCAGGTAGGATTATTA+GGG | - | chr5_1:47787458-47787477 | Msa0734160:intron | 35.0% |
| ! | TGTTCATATGCAATGCCTTT+TGG | - | chr5_1:47787761-47787780 | Msa0734160:intron | 35.0% |
| CCTCAATCAAATAAGCCAAA+AGG | + | chr5_1:47787779-47787798 | None:intergenic | 35.0% | |
| !!! | CCTTTTGGCTTATTTGATTG+AGG | - | chr5_1:47787776-47787795 | Msa0734160:intron | 35.0% |
| !! | AGGCGTTTTTGTTTGATTGT+GGG | - | chr5_1:47787796-47787815 | Msa0734160:intron | 35.0% |
| TAGACCATAGTAGTCAATAG+CGG | - | chr5_1:47788273-47788292 | Msa0734160:intron | 35.0% | |
| TATAGCGCTATGACAAATAG+TGG | + | chr5_1:47788618-47788637 | None:intergenic | 35.0% | |
| TTTGACAAGTATGCTAAGAC+TGG | - | chr5_1:47789009-47789028 | Msa0734160:intron | 35.0% | |
| ATCTTGAAAGGATGAAACCT+AGG | - | chr5_1:47789062-47789081 | Msa0734160:intron | 35.0% | |
| TTACTCTACTATCTTTCCTC+TGG | + | chr5_1:47789143-47789162 | None:intergenic | 35.0% | |
| GAGTTTACAAGGGTCTATTT+AGG | + | chr5_1:47789208-47789227 | None:intergenic | 35.0% | |
| !!! | GATTTTGGGACAAATGTTTC+AGG | - | chr5_1:47789278-47789297 | Msa0734160:intron | 35.0% |
| AAAGGAGTGAATTGGGTTAT+GGG | - | chr5_1:47789340-47789359 | Msa0734160:intron | 35.0% | |
| ! | TCAGAAAGTTGGTTAACAAG+AGG | - | chr5_1:47789371-47789390 | Msa0734160:intron | 35.0% |
| ! | TGCTTTGTGATTTTCCGTAT+TGG | - | chr5_1:47789452-47789471 | Msa0734160:intron | 35.0% |
| ! | GCTTTGTGATTTTCCGTATT+GGG | - | chr5_1:47789453-47789472 | Msa0734160:intron | 35.0% |
| !! | GCTTTGTTTAGGAGTTTCTA+GGG | + | chr5_1:47789556-47789575 | None:intergenic | 35.0% |
| !! | AGCTTTGTTTAGGAGTTTCT+AGG | + | chr5_1:47789557-47789576 | None:intergenic | 35.0% |
| AAACTCCTAAACAAAGCTCA+AGG | - | chr5_1:47789559-47789578 | Msa0734160:intron | 35.0% | |
| AACTCCTAAACAAAGCTCAA+GGG | - | chr5_1:47789560-47789579 | Msa0734160:intron | 35.0% | |
| GAATATGTTCTTAGGGAGTT+AGG | - | chr5_1:47789619-47789638 | Msa0734160:intron | 35.0% | |
| GCTTGAGTTTATAATTGCAC+TGG | - | chr5_1:47789769-47789788 | Msa0734160:intron | 35.0% | |
| !!! | ACTCAGTTTTGGTTTGCTTA+TGG | - | chr5_1:47789954-47789973 | Msa0734160:CDS | 35.0% |
| AAAACACACAATAAGGTAGC+AGG | + | chr5_1:47790060-47790079 | None:intergenic | 35.0% | |
| GGGGATAATGACAAATATGA+TGG | - | chr5_1:47790155-47790174 | Msa0734160:intron | 35.0% | |
| ATGGTCCCAATAAAGAAAGA+AGG | - | chr5_1:47790174-47790193 | Msa0734160:intron | 35.0% | |
| CCCAATAAAGAAAGAAGGTA+TGG | - | chr5_1:47790179-47790198 | Msa0734160:intron | 35.0% | |
| GCCATACCTTCTTTCTTTAT+TGG | + | chr5_1:47790183-47790202 | None:intergenic | 35.0% | |
| ! | GAATCTCTATCTCTAGTTTC+TGG | + | chr5_1:47790227-47790246 | None:intergenic | 35.0% |
| CTTCTATCATTTCTCTTGGA+TGG | + | chr5_1:47790290-47790309 | None:intergenic | 35.0% | |
| CTCTCTTCTATCATTTCTCT+TGG | + | chr5_1:47790294-47790313 | None:intergenic | 35.0% | |
| CAAGAGAAATGATAGAAGAG+AGG | - | chr5_1:47790292-47790311 | Msa0734160:intron | 35.0% | |
| AGATGGCGATAGTAAATTTG+TGG | - | chr5_1:47790334-47790353 | Msa0734160:CDS | 35.0% | |
| GATGGCGATAGTAAATTTGT+GGG | - | chr5_1:47790335-47790354 | Msa0734160:CDS | 35.0% | |
| ! | TCTCTTTTCTTCTCTTCTAC+TGG | + | chr5_1:47790372-47790391 | None:intergenic | 35.0% |
| ! | TCATCATCTTGATAGTCTCT+TGG | + | chr5_1:47790395-47790414 | None:intergenic | 35.0% |
| AACAATTGCCAAGAGAAGAT+CGG | - | chr5_1:47790420-47790439 | Msa0734160:intron | 35.0% | |
| GAAGAAATGAGATCAAGGAA+TGG | - | chr5_1:47790452-47790471 | Msa0734160:intron | 35.0% | |
| CAAGGAATGGTTATGATGAT+AGG | - | chr5_1:47790465-47790484 | Msa0734160:intron | 35.0% | |
| TGAGCCAAGAGATCATAAAA+GGG | - | chr5_1:47790493-47790512 | Msa0734160:intron | 35.0% | |
| ! | TCTTCCCTTTTATGATCTCT+TGG | + | chr5_1:47790500-47790519 | None:intergenic | 35.0% |
| TGATCAGAATCTCTTGACTT+AGG | + | chr5_1:47790560-47790579 | None:intergenic | 35.0% | |
| GAGAAGATAAAAGACCAAGT+AGG | - | chr5_1:47790582-47790601 | Msa0734160:intron | 35.0% | |
| AAGATAAAAGACCAAGTAGG+CGG | - | chr5_1:47790585-47790604 | Msa0734160:intron | 35.0% | |
| GTCAGAATCATTTCTTCCTT+TGG | + | chr5_1:47790774-47790793 | None:intergenic | 35.0% | |
| ATTGAGATCTGGGTTTATCA+TGG | - | chr5_1:47790829-47790848 | Msa0734160:intron | 35.0% | |
| GGTTTATCATGGACAAGAAT+GGG | - | chr5_1:47790840-47790859 | Msa0734160:intron | 35.0% | |
| ! | GTTGTGAGTAATTGTCCTTT+TGG | - | chr5_1:47790958-47790977 | Msa0734160:intron | 35.0% |
| ! | AATGCATGAAGCATTAGCAT+TGG | + | chr5_1:47791029-47791048 | None:intergenic | 35.0% |
| ! | AACTTTGGAAAGTAGGGAAG+GGG | - | chr5_1:47786293-47786312 | Msa0734160:three_prime_UTR | 40.0% |
| ! | GATTCCGCTTATGTTTTCGT+CGG | - | chr5_1:47786749-47786768 | Msa0734160:CDS | 40.0% |
| !!! | TTTTGGTGTTGGTGATATCC+AGG | - | chr5_1:47786979-47786998 | Msa0734160:CDS | 40.0% |
| !! | TGTTGGTGATATCCAGGTAT+GGG | - | chr5_1:47786985-47787004 | Msa0734160:CDS | 40.0% |
| ! | CTTGTAAGAGACAAAGGTAC+TGG | - | chr5_1:47787026-47787045 | Msa0734160:CDS | 40.0% |
| !! | CAAAGGTACTGGAAAATCGA+AGG | - | chr5_1:47787037-47787056 | Msa0734160:CDS | 40.0% |
| AGATAATCTGAATGGAGCTC+AGG | - | chr5_1:47787437-47787456 | Msa0734160:intron | 40.0% | |
| TTCAGGTAGGATTATTAGGG+TGG | - | chr5_1:47787461-47787480 | Msa0734160:intron | 40.0% | |
| AAGAGGAAGCAAAGCAGAAA+AGG | - | chr5_1:47787523-47787542 | Msa0734160:intron | 40.0% | |
| AGAGGAAGCAAAGCAGAAAA+GGG | - | chr5_1:47787524-47787543 | Msa0734160:intron | 40.0% | |
| !! | GAGGCGTTTTTGTTTGATTG+TGG | - | chr5_1:47787795-47787814 | Msa0734160:intron | 40.0% |
| AGAAAGCAAGCCAGTCATTA+AGG | + | chr5_1:47787959-47787978 | None:intergenic | 40.0% | |
| !! | CTCAGACATTTGTTTCTGCT+TGG | - | chr5_1:47787977-47787996 | Msa0734160:intron | 40.0% |
| !! | GACATTTGTTTCTGCTTGGT+AGG | - | chr5_1:47787981-47788000 | Msa0734160:intron | 40.0% |
| ! | GCTATTGACTACTATGGTCT+AGG | + | chr5_1:47788274-47788293 | None:intergenic | 40.0% |
| TAGTACTCAATCTCGGATAG+CGG | + | chr5_1:47788681-47788700 | None:intergenic | 40.0% | |
| CTATCCGAGATTGAGTACTA+TGG | - | chr5_1:47788681-47788700 | Msa0734160:intron | 40.0% | |
| TAGGCCATAGTACTCAATCT+CGG | + | chr5_1:47788688-47788707 | None:intergenic | 40.0% | |
| GGAAGCAAGTTACTGTATTG+AGG | + | chr5_1:47789173-47789192 | None:intergenic | 40.0% | |
| CTATTTAGGTCAGTCGGTAA+GGG | + | chr5_1:47789194-47789213 | None:intergenic | 40.0% | |
| TCTATTTAGGTCAGTCGGTA+AGG | + | chr5_1:47789195-47789214 | None:intergenic | 40.0% | |
| AAGGGTCTATTTAGGTCAGT+CGG | + | chr5_1:47789200-47789219 | None:intergenic | 40.0% | |
| TCCTACTCGTGAGTTTACAA+GGG | + | chr5_1:47789218-47789237 | None:intergenic | 40.0% | |
| ATCCTACTCGTGAGTTTACA+AGG | + | chr5_1:47789219-47789238 | None:intergenic | 40.0% | |
| ! | TACCAGCATAGCTGTGATTT+TGG | - | chr5_1:47789263-47789282 | Msa0734160:intron | 40.0% |
| ! | ACCAGCATAGCTGTGATTTT+GGG | - | chr5_1:47789264-47789283 | Msa0734160:intron | 40.0% |
| ATTCCTGGAAAGGAGTGAAT+TGG | - | chr5_1:47789332-47789351 | Msa0734160:intron | 40.0% | |
| TTCCTGGAAAGGAGTGAATT+GGG | - | chr5_1:47789333-47789352 | Msa0734160:intron | 40.0% | |
| GAAAGGAGTGAATTGGGTTA+TGG | - | chr5_1:47789339-47789358 | Msa0734160:intron | 40.0% | |
| AAGGAGTGAATTGGGTTATG+GGG | - | chr5_1:47789341-47789360 | Msa0734160:intron | 40.0% | |
| ! | AAGCAGCAGCTTTTCACAAT+AGG | + | chr5_1:47789437-47789456 | None:intergenic | 40.0% |
| CTGATAGCTATCACCCAATA+CGG | + | chr5_1:47789469-47789488 | None:intergenic | 40.0% | |
| ! | TTTGGAGGGTGAGAAGTATA+AGG | + | chr5_1:47789522-47789541 | None:intergenic | 40.0% |
| CGAACATGCTGAGTTAGATT+TGG | - | chr5_1:47789662-47789681 | Msa0734160:intron | 40.0% | |
| !! | GGAAGCTTGTTGTTTGTAGT+AGG | - | chr5_1:47789683-47789702 | Msa0734160:intron | 40.0% |
| TTGTAGAGAGCTGCAAATAC+TGG | - | chr5_1:47790107-47790126 | Msa0734160:intron | 40.0% | |
| ! | AATACTGGTTGGGGTGATAA+CGG | - | chr5_1:47790122-47790141 | Msa0734160:intron | 40.0% |
| !! | GTGATAACGGGATTGCAAAA+GGG | - | chr5_1:47790135-47790154 | Msa0734160:intron | 40.0% |
| !! | TGATAACGGGATTGCAAAAG+GGG | - | chr5_1:47790136-47790155 | Msa0734160:intron | 40.0% |
| !! | CTAGTTTCTGGAATACGATC+TGG | + | chr5_1:47790215-47790234 | None:intergenic | 40.0% |
| GGAGAGAAGAAATGAGATCA+AGG | - | chr5_1:47790447-47790466 | Msa0734160:intron | 40.0% | |
| ! | CTTTTATGATCTCTTGGCTC+AGG | + | chr5_1:47790494-47790513 | None:intergenic | 40.0% |
| CTGAGCCAAGAGATCATAAA+AGG | - | chr5_1:47790492-47790511 | Msa0734160:intron | 40.0% | |
| GAGATCATAAAAGGGAAGAC+AGG | - | chr5_1:47790501-47790520 | Msa0734160:intron | 40.0% | |
| ATCATAAAAGGGAAGACAGG+AGG | - | chr5_1:47790504-47790523 | Msa0734160:intron | 40.0% | |
| AGATAAAAGACCAAGTAGGC+GGG | - | chr5_1:47790586-47790605 | Msa0734160:intron | 40.0% | |
| AGCAAGTCAAGAGAAACACA+CGG | - | chr5_1:47790626-47790645 | Msa0734160:CDS | 40.0% | |
| TCATGATCTTCTCTTGACCT+CGG | + | chr5_1:47790701-47790720 | None:intergenic | 40.0% | |
| GGTCAAGAGAAGATCATGAT+AGG | - | chr5_1:47790702-47790721 | Msa0734160:CDS | 40.0% | |
| ACTGATCGATCTGAATCCAA+AGG | - | chr5_1:47790755-47790774 | Msa0734160:CDS | 40.0% | |
| CTGACCAAAGAGAAGAAAAG+AGG | - | chr5_1:47790789-47790808 | Msa0734160:intron | 40.0% | |
| ! | TGGACCTCTTTTCTTCTCTT+TGG | + | chr5_1:47790796-47790815 | None:intergenic | 40.0% |
| AAAAGAGGTCCAGAAGGTAA+TGG | - | chr5_1:47790804-47790823 | Msa0734160:intron | 40.0% | |
| TCTCAATTGCCATTACCTTC+TGG | + | chr5_1:47790816-47790835 | None:intergenic | 40.0% | |
| ! | AGGTAATGGCAATTGAGATC+TGG | - | chr5_1:47790818-47790837 | Msa0734160:intron | 40.0% |
| ! | GGTAATGGCAATTGAGATCT+GGG | - | chr5_1:47790819-47790838 | Msa0734160:intron | 40.0% |
| GGGTTTATCATGGACAAGAA+TGG | - | chr5_1:47790839-47790858 | Msa0734160:intron | 40.0% | |
| TCATGGACAAGAATGGGTAT+TGG | - | chr5_1:47790846-47790865 | Msa0734160:intron | 40.0% | |
| !! | GAGTAATTGTCCTTTTGGAG+TGG | - | chr5_1:47790963-47790982 | Msa0734160:intron | 40.0% |
| ATCAAACTCACCACTCCAAA+AGG | + | chr5_1:47790976-47790995 | None:intergenic | 40.0% | |
| !! | AGCATTGGTTGTTGACACAA+TGG | + | chr5_1:47791014-47791033 | None:intergenic | 40.0% |
| ATCGTCTAAAAGCTGCTTCG+CGG | + | chr5_1:47786355-47786374 | None:intergenic | 45.0% | |
| ACTTCGCTGGTAGTAGTAGT+AGG | - | chr5_1:47786389-47786408 | Msa0734160:three_prime_UTR | 45.0% | |
| CTTCGCTGGTAGTAGTAGTA+GGG | - | chr5_1:47786390-47786409 | Msa0734160:three_prime_UTR | 45.0% | |
| ACGATTGCACACAACCTGTT+TGG | - | chr5_1:47786549-47786568 | Msa0734160:three_prime_UTR | 45.0% | |
| ! | GGTTGGGAATTTTGCCAAAC+AGG | + | chr5_1:47786566-47786585 | None:intergenic | 45.0% |
| ACATAAGCGAAGACGCTTCA+TGG | - | chr5_1:47786711-47786730 | Msa0734160:CDS | 45.0% | |
| ACCACCGACGAAAACATAAG+CGG | + | chr5_1:47786756-47786775 | None:intergenic | 45.0% | |
| TATTCCCTTCGATTTCACCG+AGG | - | chr5_1:47786775-47786794 | Msa0734160:CDS | 45.0% | |
| ATTCCCTTCGATTTCACCGA+GGG | - | chr5_1:47786776-47786795 | Msa0734160:CDS | 45.0% | |
| !! | GTGTTGGTGATATCCAGGTA+TGG | - | chr5_1:47786984-47787003 | Msa0734160:CDS | 45.0% |
| !! | GTTGGTGATATCCAGGTATG+GGG | - | chr5_1:47786986-47787005 | Msa0734160:CDS | 45.0% |
| ! | CGAAGCACTAATCTTGCTGT+TGG | - | chr5_1:47787089-47787108 | Msa0734160:CDS | 45.0% |
| GCTAACAGAAGACACATTCG+AGG | - | chr5_1:47787234-47787253 | Msa0734160:CDS | 45.0% | |
| TTTGTCGGGCTTTCCAAAGA+GGG | - | chr5_1:47787559-47787578 | Msa0734160:intron | 45.0% | |
| AAGCCAGTCATTAAGGCTGT+AGG | + | chr5_1:47787952-47787971 | None:intergenic | 45.0% | |
| CGCTATGACGATTAGCGTAA+CGG | + | chr5_1:47788324-47788343 | None:intergenic | 45.0% | |
| CGTTACGCTAATCGTCATAG+CGG | - | chr5_1:47788322-47788341 | Msa0734160:intron | 45.0% | |
| AAGGATGAAACCTAGGCAAG+CGG | - | chr5_1:47789069-47789088 | Msa0734160:intron | 45.0% | |
| ACCCTTGTAAACTCACGAGT+AGG | - | chr5_1:47789214-47789233 | Msa0734160:intron | 45.0% | |
| TCCCAAAATCACAGCTATGC+TGG | + | chr5_1:47789268-47789287 | None:intergenic | 45.0% | |
| AACCCAATTCACTCCTTTCC+AGG | + | chr5_1:47789338-47789357 | None:intergenic | 45.0% | |
| !! | TTTAGGAGTTTCTAGGGCAG+GGG | + | chr5_1:47789550-47789569 | None:intergenic | 45.0% |
| !! | GTTTAGGAGTTTCTAGGGCA+GGG | + | chr5_1:47789551-47789570 | None:intergenic | 45.0% |
| !! | TGTTTAGGAGTTTCTAGGGC+AGG | + | chr5_1:47789552-47789571 | None:intergenic | 45.0% |
| CTAAACAAAGCTCAAGGGCA+GGG | - | chr5_1:47789565-47789584 | Msa0734160:intron | 45.0% | |
| AGAATTACACAGCAGCAGCA+GGG | + | chr5_1:47789858-47789877 | None:intergenic | 45.0% | |
| AAGAATTACACAGCAGCAGC+AGG | + | chr5_1:47789859-47789878 | None:intergenic | 45.0% | |
| CTGGCAACTAAGCAGAAGAA+GGG | + | chr5_1:47790028-47790047 | None:intergenic | 45.0% | |
| TCTGGCAACTAAGCAGAAGA+AGG | + | chr5_1:47790029-47790048 | None:intergenic | 45.0% | |
| AGGTAGCAGGACAAATGATC+TGG | + | chr5_1:47790047-47790066 | None:intergenic | 45.0% | |
| AGAGAGCTGCAAATACTGGT+TGG | - | chr5_1:47790111-47790130 | Msa0734160:intron | 45.0% | |
| ! | GAGAGCTGCAAATACTGGTT+GGG | - | chr5_1:47790112-47790131 | Msa0734160:intron | 45.0% |
| ! | AGAGCTGCAAATACTGGTTG+GGG | - | chr5_1:47790113-47790132 | Msa0734160:intron | 45.0% |
| ! | ATACTGGTTGGGGTGATAAC+GGG | - | chr5_1:47790123-47790142 | Msa0734160:intron | 45.0% |
| !! | GGTGATAACGGGATTGCAAA+AGG | - | chr5_1:47790134-47790153 | Msa0734160:intron | 45.0% |
| GAGAGGAAAAGATGTTGCGA+AGG | - | chr5_1:47790309-47790328 | Msa0734160:intron | 45.0% | |
| AAGATGTTGCGAAGGCAAGA+TGG | - | chr5_1:47790317-47790336 | Msa0734160:CDS | 45.0% | |
| !!! | AGGCGGGATGTTGATGATTT+TGG | - | chr5_1:47790602-47790621 | Msa0734160:intron | 45.0% |
| AAGAGAAACACACGGTAGCA+GGG | - | chr5_1:47790634-47790653 | Msa0734160:CDS | 45.0% | |
| GAGAAGAAAAGAGGTCCAGA+AGG | - | chr5_1:47790798-47790817 | Msa0734160:intron | 45.0% | |
| !! | AAAAAAAAAAAAAAAAACTT+TGG | - | chr5_1:47786278-47786297 | Msa0734160:three_prime_UTR | 5.0% |
| !! | TTCATATAAATAAATAAAAA+AGG | + | chr5_1:47788908-47788927 | None:intergenic | 5.0% |
| !! | AAATAAATAAAAAAAAAACT+GGG | + | chr5_1:47789899-47789918 | None:intergenic | 5.0% |
| !! | TAAATAAATAAAAAAAAAAC+TGG | + | chr5_1:47789900-47789919 | None:intergenic | 5.0% |
| AGACATGAACCCGCTAACAC+TGG | - | chr5_1:47786646-47786665 | Msa0734160:CDS | 50.0% | |
| ATGCGCTTCACCAGTGTTAG+CGG | + | chr5_1:47786659-47786678 | None:intergenic | 50.0% | |
| ! | TCCGCTTATGTTTTCGTCGG+TGG | - | chr5_1:47786752-47786771 | Msa0734160:CDS | 50.0% |
| TCACCCTCGGTGAAATCGAA+GGG | + | chr5_1:47786782-47786801 | None:intergenic | 50.0% | |
| ATCACCCTCGGTGAAATCGA+AGG | + | chr5_1:47786783-47786802 | None:intergenic | 50.0% | |
| AACAGCGATCACATCACCCT+CGG | + | chr5_1:47786795-47786814 | None:intergenic | 50.0% | |
| ATCAACAACCTCCCCATACC+TGG | + | chr5_1:47787000-47787019 | None:intergenic | 50.0% | |
| CTGAATGGAGCTCAGGTTTC+AGG | - | chr5_1:47787444-47787463 | Msa0734160:intron | 50.0% | |
| ! | ATGGAGCTCAGGTTTCAGGT+AGG | - | chr5_1:47787448-47787467 | Msa0734160:intron | 50.0% |
| GATGGAGGAGGAAGATGAAG+AGG | - | chr5_1:47787506-47787525 | Msa0734160:intron | 50.0% | |
| GGAAGCAAAGCAGAAAAGGG+AGG | - | chr5_1:47787527-47787546 | Msa0734160:intron | 50.0% | |
| GTTTGTCGGGCTTTCCAAAG+AGG | - | chr5_1:47787558-47787577 | Msa0734160:intron | 50.0% | |
| TTGTCGGGCTTTCCAAAGAG+GGG | - | chr5_1:47787560-47787579 | Msa0734160:intron | 50.0% | |
| ACGCCTACAGCCTTAATGAC+TGG | - | chr5_1:47787946-47787965 | Msa0734160:intron | 50.0% | |
| GAGTACTATGGCCTAGACAC+TGG | - | chr5_1:47788693-47788712 | Msa0734160:intron | 50.0% | |
| TATGGCCTAGACACTGGTAG+AGG | - | chr5_1:47788699-47788718 | Msa0734160:intron | 50.0% | |
| CAGATCCTCTACCAGTGTCT+AGG | + | chr5_1:47788707-47788726 | None:intergenic | 50.0% | |
| CTAGACACTGGTAGAGGATC+TGG | - | chr5_1:47788705-47788724 | Msa0734160:intron | 50.0% | |
| AGGATGAAACCTAGGCAAGC+GGG | - | chr5_1:47789070-47789089 | Msa0734160:intron | 50.0% | |
| ! | TTTTTATCCCCCGCTTGCCT+AGG | + | chr5_1:47789082-47789101 | None:intergenic | 50.0% |
| GGGGTGCGATATCAGAAAGT+TGG | - | chr5_1:47789360-47789379 | Msa0734160:intron | 50.0% | |
| !! | CCTGCCCTTGAGCTTTGTTT+AGG | + | chr5_1:47789567-47789586 | None:intergenic | 50.0% |
| CCTAAACAAAGCTCAAGGGC+AGG | - | chr5_1:47789564-47789583 | Msa0734160:intron | 50.0% | |
| CAGAGCCCGTGAAAATGAGA+TGG | - | chr5_1:47790253-47790272 | Msa0734160:intron | 50.0% | |
| TGCCAAGAGAAGATCGGCAA+AGG | - | chr5_1:47790426-47790445 | Msa0734160:intron | 50.0% | |
| CTCCTTTGCCGATCTTCTCT+TGG | + | chr5_1:47790431-47790450 | None:intergenic | 50.0% | |
| TCATCAACATCCCGCCTACT+TGG | + | chr5_1:47790599-47790618 | None:intergenic | 50.0% | |
| CAAGAGAAACACACGGTAGC+AGG | - | chr5_1:47790633-47790652 | Msa0734160:CDS | 50.0% | |
| CTGACGATGAATCTATGCCG+AGG | - | chr5_1:47790681-47790700 | Msa0734160:CDS | 50.0% | |
| CTAAAAGCTGCTTCGCGGAC+AGG | + | chr5_1:47786350-47786369 | None:intergenic | 55.0% | |
| ! | CCAGCGAAGTGCTTCTGCAA+AGG | + | chr5_1:47786379-47786398 | None:intergenic | 55.0% |
| !! | CCTTTGCAGAAGCACTTCGC+TGG | - | chr5_1:47786376-47786395 | Msa0734160:three_prime_UTR | 55.0% |
| TGCGCTTCACCAGTGTTAGC+GGG | + | chr5_1:47786658-47786677 | None:intergenic | 55.0% | |
| GGTGATATCCAGGTATGGGG+AGG | - | chr5_1:47786989-47787008 | Msa0734160:CDS | 55.0% | |
| GAAAGCCCGACAAACACCAC+GGG | + | chr5_1:47787553-47787572 | None:intergenic | 55.0% | |
| GGAAAGCCCGACAAACACCA+CGG | + | chr5_1:47787554-47787573 | None:intergenic | 55.0% | |
| CACGAGTACACTCCCCTCTT+TGG | + | chr5_1:47787575-47787594 | None:intergenic | 55.0% | |
| ! | CAAAGAGGGGAGTGTACTCG+TGG | - | chr5_1:47787573-47787592 | Msa0734160:intron | 55.0% |
| !! | TGCTTGGTAGGCTTGCTGTC+AGG | - | chr5_1:47787993-47788012 | Msa0734160:intron | 55.0% |
| ! | GCGGCCGCTATTGACTACTA+TGG | + | chr5_1:47788280-47788299 | None:intergenic | 55.0% |
| CGCTAATCGTCATAGCGGTG+CGG | - | chr5_1:47788327-47788346 | Msa0734160:intron | 55.0% | |
| AGCGGTGCGGAATGAGATAG+AGG | - | chr5_1:47788340-47788359 | Msa0734160:intron | 55.0% | |
| GGCCACTTCAGCTGCTATAG+CGG | - | chr5_1:47788361-47788380 | Msa0734160:intron | 55.0% | |
| !! | TATAGCGGCGTAGCGGATAG+CGG | - | chr5_1:47788376-47788395 | Msa0734160:intron | 55.0% |
| CGACTACAAGGTGGGATAGC+GGG | + | chr5_1:47788647-47788666 | None:intergenic | 55.0% | |
| CCGACTACAAGGTGGGATAG+CGG | + | chr5_1:47788648-47788667 | None:intergenic | 55.0% | |
| CCGCTATCCCACCTTGTAGT+CGG | - | chr5_1:47788645-47788664 | Msa0734160:intron | 55.0% | |
| GTAGCAGCCGACTACAAGGT+GGG | + | chr5_1:47788655-47788674 | None:intergenic | 55.0% | |
| GGATGAAACCTAGGCAAGCG+GGG | - | chr5_1:47789071-47789090 | Msa0734160:intron | 55.0% | |
| GATGAAACCTAGGCAAGCGG+GGG | - | chr5_1:47789072-47789091 | Msa0734160:intron | 55.0% | |
| AAGCAGAAAAGGGAGGCCCG+TGG | - | chr5_1:47787534-47787553 | Msa0734160:intron | 60.0% | |
| CGCCGCTATAGCAGCTGAAG+TGG | + | chr5_1:47788366-47788385 | None:intergenic | 60.0% | |
| CAGCTGCTATAGCGGCGTAG+CGG | - | chr5_1:47788369-47788388 | Msa0734160:intron | 60.0% | |
| CGTAGCAGCCGACTACAAGG+TGG | + | chr5_1:47788656-47788675 | None:intergenic | 60.0% | |
| GTGCGTAGCAGCCGACTACA+AGG | + | chr5_1:47788659-47788678 | None:intergenic | 60.0% | |
| !! | GGAGTTTCTAGGGCAGGGGA+GGG | + | chr5_1:47789546-47789565 | None:intergenic | 60.0% |
| !! | AGGAGTTTCTAGGGCAGGGG+AGG | + | chr5_1:47789547-47789566 | None:intergenic | 60.0% |
| CACACGGTAGCAGGGAAGAG+AGG | - | chr5_1:47790642-47790661 | Msa0734160:CDS | 60.0% | |
| GGGAGGCCCGTGGTGTTTGT+CGG | - | chr5_1:47787544-47787563 | Msa0734160:intron | 65.0% | |
| GGAGGCCCGTGGTGTTTGTC+GGG | - | chr5_1:47787545-47787564 | Msa0734160:intron | 65.0% | |
| ! | GGGGAGTGTACTCGTGGAGC+TGG | - | chr5_1:47787579-47787598 | Msa0734160:intron | 65.0% |
| CGTCGCAGCTACGCTACGTG+CGG | + | chr5_1:47788299-47788318 | None:intergenic | 65.0% | |
| ! | TCTAGGGCAGGGGAGGGCTT+TGG | + | chr5_1:47789540-47789559 | None:intergenic | 65.0% |
| GCTGCTTCGCGGACAGGCGA+AGG | + | chr5_1:47786344-47786363 | None:intergenic | 70.0% | |
| !! | GGGCAGGGGAGGGCTTTGGA+GGG | + | chr5_1:47789536-47789555 | None:intergenic | 70.0% |
| ! | AGGGCAGGGGAGGGCTTTGG+AGG | + | chr5_1:47789537-47789556 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 47786264 | 47791161 | 47786264 | ID=Msa0734160;Name=Msa0734160 |
| chr5_1 | mRNA | 47786264 | 47791161 | 47786264 | ID=Msa0734160-mRNA-1;Parent=Msa0734160;Name=Msa0734160-mRNA-1;_AED=0.08;_eAED=0.08;_QI=205|1|1|1|0.75|0.6|5|338|393 |
| chr5_1 | exon | 47786264 | 47787312 | 47786264 | ID=Msa0734160-mRNA-1:exon:13703;Parent=Msa0734160-mRNA-1 |
| chr5_1 | exon | 47789799 | 47789986 | 47789799 | ID=Msa0734160-mRNA-1:exon:13702;Parent=Msa0734160-mRNA-1 |
| chr5_1 | exon | 47790315 | 47790424 | 47790315 | ID=Msa0734160-mRNA-1:exon:13701;Parent=Msa0734160-mRNA-1 |
| chr5_1 | exon | 47790603 | 47790799 | 47790603 | ID=Msa0734160-mRNA-1:exon:13700;Parent=Msa0734160-mRNA-1 |
| chr5_1 | exon | 47790981 | 47791161 | 47790981 | ID=Msa0734160-mRNA-1:exon:13699;Parent=Msa0734160-mRNA-1 |
| chr5_1 | five_prime_UTR | 47790981 | 47791161 | 47790981 | ID=Msa0734160-mRNA-1:five_prime_utr;Parent=Msa0734160-mRNA-1 |
| chr5_1 | five_prime_UTR | 47790776 | 47790799 | 47790776 | ID=Msa0734160-mRNA-1:five_prime_utr;Parent=Msa0734160-mRNA-1 |
| chr5_1 | CDS | 47790603 | 47790775 | 47790603 | ID=Msa0734160-mRNA-1:cds;Parent=Msa0734160-mRNA-1 |
| chr5_1 | CDS | 47790315 | 47790424 | 47790315 | ID=Msa0734160-mRNA-1:cds;Parent=Msa0734160-mRNA-1 |
| chr5_1 | CDS | 47789799 | 47789986 | 47789799 | ID=Msa0734160-mRNA-1:cds;Parent=Msa0734160-mRNA-1 |
| chr5_1 | CDS | 47786602 | 47787312 | 47786602 | ID=Msa0734160-mRNA-1:cds;Parent=Msa0734160-mRNA-1 |
| chr5_1 | three_prime_UTR | 47786264 | 47786601 | 47786264 | ID=Msa0734160-mRNA-1:three_prime_utr;Parent=Msa0734160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
