AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0734780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734780 MtrunA17_Chr5g0431811 72.683 205 36 5 20 205 594 797 1.18e-91 289
Msa0734780 MtrunA17_Chr3g0126391 44.118 68 37 1 91 157 131 198 7.90e-16 74.7
Msa0734780 MtrunA17_Chr8g0387981 48.387 62 31 1 91 151 130 191 6.45e-14 69.3
Msa0734780 MtrunA17_Chr3g0128671 30.357 168 79 7 6 160 53 195 4.98e-13 66.6
Msa0734780 MtrunA17_Chr7g0244971 42.188 64 36 1 91 153 121 184 7.66e-12 63.2
Msa0734780 MtrunA17_Chr7g0244981 40.909 66 38 1 89 153 118 183 1.09e-11 62.4
Msa0734780 MtrunA17_Chr8g0347251 46.032 63 33 1 93 154 136 198 1.80e-11 62.4
Msa0734780 MtrunA17_Chr7g0275531 43.284 67 37 1 93 158 118 184 2.06e-11 62.0
Msa0734780 MtrunA17_Chr2g0315381 33.898 118 67 4 93 205 144 255 8.18e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734780 AT2G40740.1 39.568 139 78 4 60 197 142 275 4.62e-26 102
Msa0734780 AT2G40740.3 39.568 139 78 4 60 197 151 284 6.12e-26 102
Msa0734780 AT2G46400.1 33.858 127 74 4 54 176 67 187 3.01e-16 75.9
Msa0734780 AT4G11070.2 38.053 113 61 3 53 164 77 181 1.48e-14 70.9
Msa0734780 AT4G23810.1 40.000 95 52 2 63 156 132 222 1.96e-14 70.9
Msa0734780 AT4G11070.1 39.216 102 57 2 64 164 116 213 2.19e-14 70.9
Msa0734780 AT2G40740.2 38.372 86 50 1 112 197 149 231 9.26e-14 68.2
Msa0734780 AT3G56400.1 43.284 67 37 1 93 158 120 186 1.70e-13 68.2
Msa0734780 AT5G24110.1 28.000 175 107 6 1 168 21 183 1.87e-12 65.1
Msa0734780 AT2G37260.1 43.750 80 37 3 93 171 349 421 3.20e-12 65.1
Msa0734780 AT1G66560.1 45.161 62 31 2 92 151 102 162 3.47e-12 63.9
Msa0734780 AT2G37260.2 43.750 80 37 3 93 171 267 339 3.54e-12 64.7
Msa0734780 AT2G37260.3 43.750 80 37 3 93 171 269 341 3.67e-12 64.7
Msa0734780 AT5G22570.1 45.763 59 31 1 94 151 111 169 3.85e-12 64.3
Msa0734780 AT1G66550.2 42.857 63 35 1 90 151 100 162 4.41e-12 63.5
Msa0734780 AT1G66550.1 42.857 63 35 1 90 151 105 167 4.68e-12 63.5
Msa0734780 AT2G40750.1 43.333 60 33 1 93 151 152 211 4.83e-11 61.2
Msa0734780 AT1G66600.1 39.189 74 36 2 79 151 97 162 9.54e-11 59.7

Find 91 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCCTCTGGCATAGAGTTTA+TGG 0.171782 5_1:+49533830 None:intergenic
AACAATTAGGGACATATTTA+AGG 0.175778 5_1:-49539397 Msa0734780:five_prime_UTR
CTGACAAAGGCGACAAATTT+TGG 0.195810 5_1:-49539348 Msa0734780:five_prime_UTR
TTCAAAGATTCGTAGAATTA+TGG 0.204532 5_1:-49539223 Msa0734780:five_prime_UTR
TTCATCACATGTTGGGTAAT+TGG 0.206411 5_1:+49539312 None:intergenic
GGTTCCTAATTCACTATCTT+TGG 0.234069 5_1:+49539098 None:intergenic
ACTTCATCAACTTTATATTC+TGG 0.265815 5_1:-49534696 Msa0734780:CDS
AGAGACTGGGGAAAACAATT+AGG 0.294854 5_1:-49539410 None:intergenic
TAATGGCAGGAGAAAGAAAT+TGG 0.297328 5_1:-49537249 Msa0734780:intron
ATGACCAAAGATAGTGAATT+AGG 0.301612 5_1:-49539102 Msa0734780:five_prime_UTR
GGATACATTGGAGAGCAATT+TGG 0.317424 5_1:-49539202 Msa0734780:five_prime_UTR
AAGTTGTTGTACTTTCTTCC+TGG 0.317889 5_1:+49534821 None:intergenic
CTTCATCAACTTTATATTCT+GGG 0.341486 5_1:-49534695 Msa0734780:CDS
TGCTACGAGGACTCTTCTTT+AGG 0.341531 5_1:-49539165 Msa0734780:five_prime_UTR
TATATAACTTCAAATATGTT+TGG 0.345904 5_1:+49534789 None:intergenic
CACCGGAAGACGGGTTTATC+TGG 0.355975 5_1:-49537163 Msa0734780:CDS
TGTGTTCCCAAACTGGGGTT+CGG 0.363263 5_1:+49537196 None:intergenic
ATCTCTCCCGAACCCCAGTT+TGG 0.364203 5_1:-49537203 Msa0734780:CDS
AGACTTGCTCTAATGTTTGC+TGG 0.368138 5_1:+49539265 None:intergenic
TAGTGAATTAGGAACCCTTT+TGG 0.374991 5_1:-49539091 Msa0734780:five_prime_UTR
GGGTTTATCTGGAAAGAATA+TGG 0.380541 5_1:-49537152 Msa0734780:CDS
TCATCACATGTTGGGTAATT+GGG 0.383234 5_1:+49539313 None:intergenic
ATCCATTGATGGTATTGTTA+AGG 0.387780 5_1:+49534740 None:intergenic
CCCCGCCATCATTTCTTGAC+CGG 0.393350 5_1:+49538964 None:intergenic
GTGTTCCCAAACTGGGGTTC+GGG 0.408159 5_1:+49537197 None:intergenic
TAGGGACATATTTAAGGAGT+TGG 0.415790 5_1:-49539391 Msa0734780:five_prime_UTR
AAGGAGTTGGAGTATTTGAT+TGG 0.419385 5_1:-49539378 Msa0734780:five_prime_UTR
AAAACTCGCTGAGAAAGTTT+GGG 0.424967 5_1:-49539052 Msa0734780:CDS
TTCCAGATAAACCCGTCTTC+CGG 0.427566 5_1:+49537161 None:intergenic
ATATTCTGGGTGGATTTCAT+CGG 0.427674 5_1:-49534682 Msa0734780:CDS
TTTGTATGTGTTCCCAAACT+GGG 0.440270 5_1:+49537190 None:intergenic
TCTCTCCCGAACCCCAGTTT+GGG 0.442895 5_1:-49537202 Msa0734780:CDS
TATTCTGGGTGGATTTCATC+GGG 0.444409 5_1:-49534681 Msa0734780:CDS
AGAGGCCATGTTAGCTGCTC+CGG 0.449560 5_1:-49533814 Msa0734780:CDS
TTAGCTGCTCCGGCGGATGG+TGG 0.458764 5_1:-49533804 Msa0734780:CDS
AGTGGTGGCGATCGTTCCCT+TGG 0.462989 5_1:+49539004 None:intergenic
GTTTGAGTAACATCCATTGA+TGG 0.463141 5_1:+49534729 None:intergenic
TTTGTTTCAGGAGTTACTAC+AGG 0.465753 5_1:-49534875 Msa0734780:intron
ATGTTAGCTGCTCCGGCGGA+TGG 0.469165 5_1:-49533807 Msa0734780:CDS
AATTATATGCGTGTCGAGCC+AGG 0.475350 5_1:-49534839 Msa0734780:CDS
GTCCTTAACAATACCATCAA+TGG 0.475387 5_1:-49534742 Msa0734780:CDS
GCTCTAATGTTTGCTGGGAT+CGG 0.478395 5_1:+49539271 None:intergenic
TGGATTTCATCGGGCATACC+AGG 0.487949 5_1:-49534672 Msa0734780:intron
GACTTGCTCTAATGTTTGCT+GGG 0.491728 5_1:+49539266 None:intergenic
GAGACTGGGGAAAACAATTA+GGG 0.498215 5_1:-49539409 None:intergenic
GGAGCAGCTAACATGGCCTC+TGG 0.501041 5_1:+49533816 None:intergenic
TACAAAATGCCACCGGAAGA+CGG 0.501523 5_1:-49537173 Msa0734780:CDS
CACCCTCGCAACCAGGAGAA+AGG 0.510246 5_1:-49538893 Msa0734780:intron
GAATATAAAGTTGATGAAGT+AGG 0.510994 5_1:+49534699 None:intergenic
ACAAAATGCCACCGGAAGAC+GGG 0.511101 5_1:-49537172 Msa0734780:CDS
TAGCTGCTCCGGCGGATGGT+GGG 0.511190 5_1:-49533803 Msa0734780:CDS
TCCGGTCAAGAAATGATGGC+GGG 0.512447 5_1:-49538965 Msa0734780:CDS
TACCTTTCTCCTGGTTGCGA+GGG 0.522243 5_1:+49538891 None:intergenic
TCAAGAAATGATGGCGGGGA+AGG 0.522448 5_1:-49538960 Msa0734780:CDS
GAGGTAGTTCATCACATGTT+GGG 0.528887 5_1:+49539305 None:intergenic
ATACCTTTCTCCTGGTTGCG+AGG 0.537516 5_1:+49538890 None:intergenic
AAATACCTCGGGTTGAAGCC+AGG 0.538543 5_1:+49537116 None:intergenic
TAACTTCAAATATGTTTGGA+TGG 0.540945 5_1:+49534793 None:intergenic
ATCCGCCGGAGCAGCTAACA+TGG 0.543318 5_1:+49533809 None:intergenic
GGCCATGTTAGCTGCTCCGG+CGG 0.549858 5_1:-49533811 Msa0734780:CDS
GGATGATGCCCACCATCCGC+CGG 0.560052 5_1:+49533795 None:intergenic
TCGTAGAATTATGGATACAT+TGG 0.561410 5_1:-49539214 Msa0734780:five_prime_UTR
GAAGGATCAAAGGTGTATCA+AGG 0.565861 5_1:-49538942 Msa0734780:CDS
TGATGGCGGGGAAGGATCAA+AGG 0.572892 5_1:-49538952 Msa0734780:CDS
TATTGTTAAGGACATGTGGC+AGG 0.576354 5_1:+49534752 None:intergenic
TAAAGTTGATGAAGTAGGCA+TGG 0.580253 5_1:+49534704 None:intergenic
GAAGTATCACCCTCGCAACC+AGG 0.581020 5_1:-49538900 Msa0734780:CDS
GGAGGTAGTTCATCACATGT+TGG 0.586269 5_1:+49539304 None:intergenic
CAGATAAACCCGTCTTCCGG+TGG 0.589083 5_1:+49537164 None:intergenic
TTATCTGGAAAGAATATGGA+AGG 0.599335 5_1:-49537148 Msa0734780:CDS
TTGTATGTGTTCCCAAACTG+GGG 0.599512 5_1:+49537191 None:intergenic
ACGAATCTTTGAAGAAAGTG+AGG 0.606278 5_1:+49539233 None:intergenic
GCTGGGATCGGCAAACTCCA+CGG 0.607930 5_1:+49539283 None:intergenic
AGGAAGAAAGTACAACAACT+TGG 0.610203 5_1:-49534819 Msa0734780:CDS
CATCAACTTTATATTCTGGG+TGG 0.617106 5_1:-49534692 Msa0734780:CDS
GACACGCATATAATTTCATG+TGG 0.627518 5_1:+49534847 None:intergenic
TTCCGGTCAAGAAATGATGG+CGG 0.631799 5_1:-49538966 Msa0734780:CDS
AGATACCTGGCTTCAACCCG+AGG 0.632242 5_1:-49537121 Msa0734780:intron
AGTTGATGAAGTAGGCATGG+TGG 0.632638 5_1:+49534707 None:intergenic
AAAATCTAGCACTAGAGTGG+TGG 0.640432 5_1:+49538989 None:intergenic
ATCCATAAACTCTATGCCAG+AGG 0.646131 5_1:-49533832 Msa0734780:CDS
TATGGAAGGAAAGAGATACC+TGG 0.657804 5_1:-49537134 Msa0734780:CDS
ATGGTATTGTTAAGGACATG+TGG 0.661275 5_1:+49534748 None:intergenic
CCGGTCAAGAAATGATGGCG+GGG 0.666039 5_1:-49538964 Msa0734780:CDS
TTTGAAGTTATATACAACGG+TGG 0.672572 5_1:-49534780 Msa0734780:CDS
GAACACATACAAAATGCCAC+CGG 0.673182 5_1:-49537180 Msa0734780:CDS
TCATCTCAACTATATATGTG+TGG 0.676518 5_1:+49539121 None:intergenic
ATATTTGAAGTTATATACAA+CGG 0.679230 5_1:-49534783 Msa0734780:CDS
GATTGGTCGAGATCTGACAA+AGG 0.707472 5_1:-49539361 Msa0734780:five_prime_UTR
CATGTGATGAACTACCTCCG+TGG 0.736681 5_1:-49539300 Msa0734780:five_prime_UTR
GGGATCGGCAAACTCCACGG+AGG 0.807588 5_1:+49539286 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATGATATCTTTATAT+CGG - chr5_1:49535730-49535749 Msa0734780:intron 10.0%
!! TAATTGTAAATAGAAATATA+TGG + chr5_1:49535918-49535937 None:intergenic 10.0%
!! TTCTATTTACAATTAATTAA+TGG - chr5_1:49535923-49535942 Msa0734780:intron 10.0%
!!! ATTAAGTAATTAATTTTGTT+AGG - chr5_1:49536103-49536122 Msa0734780:intron 10.0%
!!! TGAAAAATGAAATTTTTTAA+TGG - chr5_1:49536696-49536715 Msa0734780:intron 10.0%
!! TAAACAAAACAAAAAAAATA+AGG + chr5_1:49537054-49537073 None:intergenic 10.0%
!!! AACTCTAAAAATATTACTAA+TGG + chr5_1:49534764-49534783 None:intergenic 15.0%
!! TAACGTATATTTAAGAATAA+AGG - chr5_1:49535887-49535906 Msa0734780:intron 15.0%
!!! ACAAATTTTGTATTTTCTAA+CGG + chr5_1:49536456-49536475 None:intergenic 15.0%
!!! AAATTTCATTTTTCAAAGAA+TGG + chr5_1:49536691-49536710 None:intergenic 15.0%
!! AAAACAAAAAAAATAAGGTT+AGG + chr5_1:49537049-49537068 None:intergenic 15.0%
!! ATTAAATTACATTATAGTCT+AGG - chr5_1:49537659-49537678 Msa0734780:intron 15.0%
!! TTAAATTACATTATAGTCTA+GGG - chr5_1:49537660-49537679 Msa0734780:intron 15.0%
!! TATATAACTTCAAATATGTT+TGG + chr5_1:49538403-49538422 None:intergenic 15.0%
!!! ATATTTGAAGTTATATACAA+CGG - chr5_1:49538406-49538425 Msa0734780:intron 15.0%
!! ATATATATATATAGCGAAAA+GGG + chr5_1:49539248-49539267 None:intergenic 15.0%
!! TATATATATATATAGCGAAA+AGG + chr5_1:49539249-49539268 None:intergenic 15.0%
!!! GGTTTTTTTTATATTGTGTA+TGG + chr5_1:49534167-49534186 None:intergenic 20.0%
!! ACACAATATAAAAAAAACCA+AGG - chr5_1:49534168-49534187 Msa0734780:intron 20.0%
!! CACAATATAAAAAAAACCAA+GGG - chr5_1:49534169-49534188 Msa0734780:intron 20.0%
!! TAATAAAATTCTAGACCAAA+AGG - chr5_1:49534563-49534582 Msa0734780:intron 20.0%
!!! CACTTTTTTTTTTTTCCTTT+TGG + chr5_1:49534581-49534600 None:intergenic 20.0%
!!! ACGAATTTGTTTAATACAAT+AGG - chr5_1:49534625-49534644 Msa0734780:intron 20.0%
!!! CACTTTTTTTTAACAAATAG+AGG + chr5_1:49534687-49534706 None:intergenic 20.0%
!! TTCCAATGTAAAATTATTCA+TGG - chr5_1:49534735-49534754 Msa0734780:CDS 20.0%
!!! AACCATGAATAATTTTACAT+TGG + chr5_1:49534740-49534759 None:intergenic 20.0%
!!! TAGTAATATTTTTAGAGTTG+CGG - chr5_1:49534765-49534784 Msa0734780:CDS 20.0%
!!! ATCCTTTTTTGTTTTGTTTT+TGG + chr5_1:49535568-49535587 None:intergenic 20.0%
!! ATTTACAATTAATTAATGGC+AGG - chr5_1:49535927-49535946 Msa0734780:intron 20.0%
!!! AAATAAGGTTAGGTTTTTTA+AGG + chr5_1:49537039-49537058 None:intergenic 20.0%
!! TAAATTATGGATATTTGGTT+TGG + chr5_1:49537336-49537355 None:intergenic 20.0%
!!! AGTATTTTACGAGTAAATTA+TGG + chr5_1:49537349-49537368 None:intergenic 20.0%
!! TAGTTAGAGATATAAAGATT+AGG - chr5_1:49537375-49537394 Msa0734780:intron 20.0%
!! AATGTATGTTAACTAAATTC+AGG - chr5_1:49537538-49537557 Msa0734780:intron 20.0%
!!! CAATTCAAGTTTCTAATAAT+AGG - chr5_1:49537856-49537875 Msa0734780:intron 20.0%
!!! TGGAGATAATATTTTTCAAT+AGG + chr5_1:49537985-49538004 None:intergenic 20.0%
!!! ATTTTTGTTGTTTTTGTTTC+AGG - chr5_1:49538302-49538321 Msa0734780:intron 20.0%
!!! TTTTTACCATAAAAAATACC+TGG + chr5_1:49538538-49538557 None:intergenic 20.0%
!! TCATTAGCAATAAAATTGTA+AGG - chr5_1:49538689-49538708 Msa0734780:intron 20.0%
!!! TGAAAATATATCTGGTTTAT+AGG - chr5_1:49538817-49538836 Msa0734780:intron 20.0%
!! AAAGCAAACAATTCTATATA+GGG + chr5_1:49538873-49538892 None:intergenic 20.0%
!! TAAAGCAAACAATTCTATAT+AGG + chr5_1:49538874-49538893 None:intergenic 20.0%
!! TATATATATATAGCGAAAAG+GGG + chr5_1:49539247-49539266 None:intergenic 20.0%
! AACAATTAGGGACATATTTA+AGG - chr5_1:49533792-49533811 Msa0734780:CDS 25.0%
! TTCAAAGATTCGTAGAATTA+TGG - chr5_1:49533966-49533985 Msa0734780:intron 25.0%
! ACATTAAAGATGCTCTAATA+AGG + chr5_1:49534405-49534424 None:intergenic 25.0%
!! AAAGTGTAATCAATTTTGTC+AGG - chr5_1:49534701-49534720 Msa0734780:CDS 25.0%
!!! AGTAATATTTTTAGAGTTGC+GGG - chr5_1:49534766-49534785 Msa0734780:CDS 25.0%
! TAAAATCTAGTCAACAGTTA+AGG - chr5_1:49534969-49534988 Msa0734780:intron 25.0%
! TTCCTTCAAACAAAAAGTTT+AGG - chr5_1:49535002-49535021 Msa0734780:intron 25.0%
! AAACAAATGCTACATATCAT+GGG + chr5_1:49535031-49535050 None:intergenic 25.0%
! AAAACAAATGCTACATATCA+TGG + chr5_1:49535032-49535051 None:intergenic 25.0%
! GTGAACTTCAAATATTTCAA+TGG - chr5_1:49535273-49535292 Msa0734780:intron 25.0%
! AACTAGATTAAGTTTCAACA+TGG - chr5_1:49535297-49535316 Msa0734780:intron 25.0%
! ACTAGATTAAGTTTCAACAT+GGG - chr5_1:49535298-49535317 Msa0734780:intron 25.0%
! TGTTATCAGTAATTAGGAAA+AGG - chr5_1:49535393-49535412 Msa0734780:intron 25.0%
! GATTATTTATGTGATGTATG+TGG + chr5_1:49535426-49535445 None:intergenic 25.0%
! GACCAAAAACAAAACAAAAA+AGG - chr5_1:49535563-49535582 Msa0734780:intron 25.0%
! TTAATTGACCATAAATACCT+CGG + chr5_1:49536088-49536107 None:intergenic 25.0%
! AATTTCGAGATATAAACATG+AGG - chr5_1:49536567-49536586 Msa0734780:intron 25.0%
! TAGAAACTGAAATAAAGTTG+TGG + chr5_1:49536635-49536654 None:intergenic 25.0%
! AAGAATGGTGAAGAAATTAA+AGG + chr5_1:49536676-49536695 None:intergenic 25.0%
!!! TGAAATTTTTTAATGGACCT+TGG - chr5_1:49536703-49536722 Msa0734780:intron 25.0%
!!! TGGGAAGATTAAGAATTTTT+TGG - chr5_1:49536742-49536761 Msa0734780:intron 25.0%
!!! ATGGTTGATAACTAAAAGTA+GGG + chr5_1:49536806-49536825 None:intergenic 25.0%
!! TGTATCTATTTTATGCATCT+TGG + chr5_1:49536907-49536926 None:intergenic 25.0%
!!! ATTCTATGATTTTGGAAGTA+TGG + chr5_1:49536983-49537002 None:intergenic 25.0%
! ATACTTCCAAAATCATAGAA+TGG - chr5_1:49536982-49537001 Msa0734780:intron 25.0%
! ACAGATAAAATCCACATATT+GGG + chr5_1:49537107-49537126 None:intergenic 25.0%
! TACAGATAAAATCCACATAT+TGG + chr5_1:49537108-49537127 None:intergenic 25.0%
! ACGAGTAAATTATGGATATT+TGG + chr5_1:49537341-49537360 None:intergenic 25.0%
! TTAGTTAACATACATTCCTT+TGG + chr5_1:49537534-49537553 None:intergenic 25.0%
! AGAATTATTTCCCAAATCTT+CGG - chr5_1:49537603-49537622 Msa0734780:intron 25.0%
! ATAGAATTCTTCGAAGATAT+GGG - chr5_1:49538037-49538056 Msa0734780:intron 25.0%
! ATTATACATCAGTGAGAAAA+TGG - chr5_1:49538082-49538101 Msa0734780:intron 25.0%
! TAACTTCAAATATGTTTGGA+TGG + chr5_1:49538399-49538418 None:intergenic 25.0%
!!! GAATATAAAGTTGATGAAGT+AGG + chr5_1:49538493-49538512 None:intergenic 25.0%
! ACTTCATCAACTTTATATTC+TGG - chr5_1:49538493-49538512 Msa0734780:intron 25.0%
! CTTCATCAACTTTATATTCT+GGG - chr5_1:49538494-49538513 Msa0734780:intron 25.0%
! AGAAAGCTTGAAAATATATC+TGG - chr5_1:49538809-49538828 Msa0734780:intron 25.0%
! ACAATTCTATATAGGGAATT+TGG + chr5_1:49538866-49538885 None:intergenic 25.0%
TCGTAGAATTATGGATACAT+TGG - chr5_1:49533975-49533994 Msa0734780:intron 30.0%
AGAAAAATCTATATGCTACG+AGG - chr5_1:49534011-49534030 Msa0734780:intron 30.0%
TCATCTCAACTATATATGTG+TGG + chr5_1:49534071-49534090 None:intergenic 30.0%
ATGACCAAAGATAGTGAATT+AGG - chr5_1:49534087-49534106 Msa0734780:intron 30.0%
TCACATGAGATCACTTATTA+TGG - chr5_1:49534850-49534869 Msa0734780:CDS 30.0%
!! CTTTTTGTTTGAAGGAATCA+TGG + chr5_1:49534999-49535018 None:intergenic 30.0%
!! CACCTAAACTTTTTGTTTGA+AGG + chr5_1:49535007-49535026 None:intergenic 30.0%
CTTCAAACAAAAAGTTTAGG+TGG - chr5_1:49535005-49535024 Msa0734780:intron 30.0%
TTCGTAACAAATACATGGAA+AGG - chr5_1:49535251-49535270 Msa0734780:intron 30.0%
AACATGGGATAAGAAATTAC+CGG - chr5_1:49535313-49535332 Msa0734780:intron 30.0%
CAGTTGTGTTATCAGTAATT+AGG - chr5_1:49535387-49535406 Msa0734780:intron 30.0%
CACATAAATAATCATGCACA+AGG - chr5_1:49535433-49535452 Msa0734780:intron 30.0%
AATATTTGAACTTTGCCGTA+AGG + chr5_1:49535496-49535515 None:intergenic 30.0%
TCAAATATTAAGTCTCGTGT+TGG - chr5_1:49535507-49535526 Msa0734780:intron 30.0%
AAAGGATTTACCAAATTGCA+TGG - chr5_1:49535581-49535600 Msa0734780:intron 30.0%
!! TGATAGTGAGCAATTTTGTA+TGG - chr5_1:49535684-49535703 Msa0734780:intron 30.0%
! GATAGTGAGCAATTTTGTAT+GGG - chr5_1:49535685-49535704 Msa0734780:intron 30.0%
! AGAGAAGACTAGGTTTTTAT+TGG + chr5_1:49535766-49535785 None:intergenic 30.0%
TTATCTGGAAAGAATATGGA+AGG - chr5_1:49536041-49536060 Msa0734780:intron 30.0%
TAATTGACCATAAATACCTC+GGG + chr5_1:49536087-49536106 None:intergenic 30.0%
ATGAGTGTTTAGTGTAAAAC+TGG + chr5_1:49536183-49536202 None:intergenic 30.0%
TGAATGAAGTTAGCAAACAA+GGG + chr5_1:49536208-49536227 None:intergenic 30.0%
TTGAATGAAGTTAGCAAACA+AGG + chr5_1:49536209-49536228 None:intergenic 30.0%
!! CTCTAGTTATTTTCACTACA+AGG + chr5_1:49536357-49536376 None:intergenic 30.0%
CTTGTAGTGAAAATAACTAG+AGG - chr5_1:49536355-49536374 Msa0734780:intron 30.0%
TGGATCCTTTAACACTTTAT+GGG + chr5_1:49536595-49536614 None:intergenic 30.0%
ATGGATCCTTTAACACTTTA+TGG + chr5_1:49536596-49536615 None:intergenic 30.0%
! GAAATTAAAGGCTTTGTCTT+CGG + chr5_1:49536664-49536683 None:intergenic 30.0%
! AAAACTGGTTTATCATTCCA+AGG + chr5_1:49536723-49536742 None:intergenic 30.0%
! TTGGAATGATAAACCAGTTT+TGG - chr5_1:49536722-49536741 Msa0734780:intron 30.0%
! TGGAATGATAAACCAGTTTT+GGG - chr5_1:49536723-49536742 Msa0734780:intron 30.0%
ATTCTTAATCTTCCCAAAAC+TGG + chr5_1:49536738-49536757 None:intergenic 30.0%
!! TGGTTGATAACTAAAAGTAG+GGG + chr5_1:49536805-49536824 None:intergenic 30.0%
!! GATGGTTGATAACTAAAAGT+AGG + chr5_1:49536807-49536826 None:intergenic 30.0%
GTGTTAGATCAAGAGATAAA+TGG - chr5_1:49536845-49536864 Msa0734780:intron 30.0%
!! ATTTTGGAAGTATGGTTAGT+CGG + chr5_1:49536975-49536994 None:intergenic 30.0%
!!! TTTTAAGGCTGTACTTAATC+AGG + chr5_1:49537024-49537043 None:intergenic 30.0%
! TATGTGGATTTTATCTGTAG+AGG - chr5_1:49537109-49537128 Msa0734780:intron 30.0%
! ATGTGGATTTTATCTGTAGA+GGG - chr5_1:49537110-49537129 Msa0734780:intron 30.0%
AAGACAGATCAATAAGATAG+CGG - chr5_1:49537633-49537652 Msa0734780:intron 30.0%
CTACTTCACAAATTAGATTG+AGG - chr5_1:49537886-49537905 Msa0734780:intron 30.0%
GATAGAATTCTTCGAAGATA+TGG - chr5_1:49538036-49538055 Msa0734780:intron 30.0%
! TTTGAAGTTATATACAACGG+TGG - chr5_1:49538409-49538428 Msa0734780:intron 30.0%
! ATCCATTGATGGTATTGTTA+AGG + chr5_1:49538452-49538471 None:intergenic 30.0%
ACACTTCTCTCATTATTCAT+TGG + chr5_1:49538573-49538592 None:intergenic 30.0%
GTTTATATACTCCCAAACAA+AGG - chr5_1:49538718-49538737 Msa0734780:intron 30.0%
TTATAGGATCCAATTCAAAG+TGG - chr5_1:49538833-49538852 Msa0734780:intron 30.0%
AGAATTGTTTGCTTTATGAG+TGG - chr5_1:49538878-49538897 Msa0734780:intron 30.0%
CCAAGAAAAAGGAAACTTAT+TGG + chr5_1:49538929-49538948 None:intergenic 30.0%
! CCAATAAGTTTCCTTTTTCT+TGG - chr5_1:49538926-49538945 Msa0734780:CDS 30.0%
!!! TGATCTATGCTTTTAGAGTT+TGG - chr5_1:49538961-49538980 Msa0734780:CDS 30.0%
!!! GTTTGAGAGTTTTTTGTGAT+GGG - chr5_1:49539055-49539074 Msa0734780:CDS 30.0%
!!! TTTGAGAGTTTTTTGTGATG+GGG - chr5_1:49539056-49539075 Msa0734780:CDS 30.0%
AACAAAAGGTAAACAGAGAA+AGG + chr5_1:49539159-49539178 None:intergenic 30.0%
! TTTCTCTGTTTACCTTTTGT+TGG - chr5_1:49539158-49539177 Msa0734780:five_prime_UTR 30.0%
CAGATACAAAAGAAATGGAA+AGG + chr5_1:49539191-49539210 None:intergenic 30.0%
GTTGTCAGATACAAAAGAAA+TGG + chr5_1:49539196-49539215 None:intergenic 30.0%
TTACAGTAATTGAATTCCAC+AGG - chr5_1:49539331-49539350 Msa0734780:five_prime_UTR 30.0%
TAGGGACATATTTAAGGAGT+TGG - chr5_1:49533798-49533817 Msa0734780:CDS 35.0%
! AAGGAGTTGGAGTATTTGAT+TGG - chr5_1:49533811-49533830 Msa0734780:CDS 35.0%
TCATCACATGTTGGGTAATT+GGG + chr5_1:49533879-49533898 None:intergenic 35.0%
TTCATCACATGTTGGGTAAT+TGG + chr5_1:49533880-49533899 None:intergenic 35.0%
! ACGAATCTTTGAAGAAAGTG+AGG + chr5_1:49533959-49533978 None:intergenic 35.0%
GGTTCCTAATTCACTATCTT+TGG + chr5_1:49534094-49534113 None:intergenic 35.0%
! TAGTGAATTAGGAACCCTTT+TGG - chr5_1:49534098-49534117 Msa0734780:intron 35.0%
! AGTGAATTAGGAACCCTTTT+GGG - chr5_1:49534099-49534118 Msa0734780:intron 35.0%
! AAACTTTCTCAGCGAGTTTT+TGG + chr5_1:49534137-49534156 None:intergenic 35.0%
AAAAACTCGCTGAGAAAGTT+TGG - chr5_1:49534136-49534155 Msa0734780:intron 35.0%
AAAACTCGCTGAGAAAGTTT+GGG - chr5_1:49534137-49534156 Msa0734780:intron 35.0%
GAAAAAATCTAGCACTAGAG+TGG + chr5_1:49534206-49534225 None:intergenic 35.0%
!!! CTCTAGTGCTAGATTTTTTC+CGG - chr5_1:49534206-49534225 Msa0734780:intron 35.0%
! TTTTTCCGGTCAAGAAATGA+TGG - chr5_1:49534220-49534239 Msa0734780:intron 35.0%
!! AAGTTTTGATACCTTTCTCC+TGG + chr5_1:49534310-49534329 None:intergenic 35.0%
TGCATATTACTTACTCTCGT+TGG - chr5_1:49534451-49534470 Msa0734780:intron 35.0%
!!! ATATTTTTAGAGTTGCGGGT+TGG - chr5_1:49534770-49534789 Msa0734780:CDS 35.0%
TTTGAGTGAAGGAATCATGT+AGG + chr5_1:49535078-49535097 None:intergenic 35.0%
!! AAGTGAGCAATTTTGAGTGA+AGG + chr5_1:49535089-49535108 None:intergenic 35.0%
AACTCACGTTGAGAATATTG+TGG + chr5_1:49535125-49535144 None:intergenic 35.0%
AACGTGAGTTATCTCACATT+CGG - chr5_1:49535135-49535154 Msa0734780:intron 35.0%
CAACATGAGTTAACTCATGT+TGG + chr5_1:49535164-49535183 None:intergenic 35.0%
CAACATGAGTTAACTCATGT+TGG - chr5_1:49535164-49535183 Msa0734780:intron 35.0%
AGTTAACTCACGTAGGTTAT+AGG + chr5_1:49535190-49535209 None:intergenic 35.0%
AGAAGATATGACTTTCTGTC+CGG + chr5_1:49535335-49535354 None:intergenic 35.0%
!! CTGCTACTTTGTATTTCCAT+TGG + chr5_1:49535465-49535484 None:intergenic 35.0%
TGGTAACAAACCATGCAATT+TGG + chr5_1:49535594-49535613 None:intergenic 35.0%
GTGAGTTAACTCAAGGTTAT+AGG - chr5_1:49535616-49535635 Msa0734780:intron 35.0%
TAATGGCAGGAGAAAGAAAT+TGG - chr5_1:49535940-49535959 Msa0734780:intron 35.0%
TTTGTATGTGTTCCCAAACT+GGG + chr5_1:49536002-49536021 None:intergenic 35.0%
! TTTTGTATGTGTTCCCAAAC+TGG + chr5_1:49536003-49536022 None:intergenic 35.0%
GGGTTTATCTGGAAAGAATA+TGG - chr5_1:49536037-49536056 Msa0734780:intron 35.0%
AGTGTTTAGTGTAAAACTGG+AGG + chr5_1:49536180-49536199 None:intergenic 35.0%
AGAGGTCTATATAGATGACA+TGG - chr5_1:49536373-49536392 Msa0734780:intron 35.0%
GATAGTTCAAAATGCTCCTT+TGG - chr5_1:49536479-49536498 Msa0734780:intron 35.0%
!!! AGCTAAGGAATTTTCTAGCT+TGG + chr5_1:49536508-49536527 None:intergenic 35.0%
TGGTTCTTCTCATTAGATGA+TGG + chr5_1:49536615-49536634 None:intergenic 35.0%
!! ATTTGGCCTTATTAGAACGT+AGG + chr5_1:49536773-49536792 None:intergenic 35.0%
GTTCTAATAAGGCCAAATCA+AGG - chr5_1:49536775-49536794 Msa0734780:intron 35.0%
! CATCGATTATTTCCTTTGCA+CGG - chr5_1:49536823-49536842 Msa0734780:intron 35.0%
! CACGAAATTGCGTAGTTTTT+CGG + chr5_1:49536873-49536892 None:intergenic 35.0%
CTTCCAAAATCATAGAATGG+TGG - chr5_1:49536985-49537004 Msa0734780:intron 35.0%
! TGACCACCATTCTATGATTT+TGG + chr5_1:49536991-49537010 None:intergenic 35.0%
TTGAATTGATCTACGTTCCA+AGG - chr5_1:49537408-49537427 Msa0734780:intron 35.0%
TGAATTGATCTACGTTCCAA+GGG - chr5_1:49537409-49537428 Msa0734780:intron 35.0%
TCTCTTGGTATTGTAAAGCT+TGG + chr5_1:49537462-49537481 None:intergenic 35.0%
!!! TTTGGTGCTTGGTTTTAGAA+GGG + chr5_1:49537516-49537535 None:intergenic 35.0%
! AAATTCAGGAGAGTGTAGAT+TGG - chr5_1:49537552-49537571 Msa0734780:intron 35.0%
TCTTCTTCTAATACTGAACG+AGG + chr5_1:49537586-49537605 None:intergenic 35.0%
ATTATTTCCCAAATCTTCGG+TGG - chr5_1:49537606-49537625 Msa0734780:intron 35.0%
TAGGGAAAACTGCATAAAAG+AGG - chr5_1:49537678-49537697 Msa0734780:intron 35.0%
TAGGTAAACGAAGTAATGTG+TGG - chr5_1:49537724-49537743 Msa0734780:intron 35.0%
ACTCTGTCTAGTAATAGAGT+GGG + chr5_1:49537808-49537827 None:intergenic 35.0%
ACTCTATTACTAGACAGAGT+GGG - chr5_1:49537808-49537827 Msa0734780:intron 35.0%
! GATGAATTGAGTCTTGTGTT+TGG + chr5_1:49538005-49538024 None:intergenic 35.0%
GACTCAATTCATCATCTTCT+TGG - chr5_1:49538012-49538031 Msa0734780:intron 35.0%
! ATTTTGCGGTATGACTTTGT+CGG + chr5_1:49538122-49538141 None:intergenic 35.0%
!! TTTGCTTCAGTCGATTTTAG+AGG + chr5_1:49538265-49538284 None:intergenic 35.0%
TTTGTTTCAGGAGTTACTAC+AGG - chr5_1:49538314-49538333 Msa0734780:intron 35.0%
GACACGCATATAATTTCATG+TGG + chr5_1:49538345-49538364 None:intergenic 35.0%
AAGTTGTTGTACTTTCTTCC+TGG + chr5_1:49538371-49538390 None:intergenic 35.0%
! AGGAAGAAAGTACAACAACT+TGG - chr5_1:49538370-49538389 Msa0734780:intron 35.0%
ATGGTATTGTTAAGGACATG+TGG + chr5_1:49538444-49538463 None:intergenic 35.0%
GTCCTTAACAATACCATCAA+TGG - chr5_1:49538447-49538466 Msa0734780:intron 35.0%
GTTTGAGTAACATCCATTGA+TGG + chr5_1:49538463-49538482 None:intergenic 35.0%
!! TAAAGTTGATGAAGTAGGCA+TGG + chr5_1:49538488-49538507 None:intergenic 35.0%
CATCAACTTTATATTCTGGG+TGG - chr5_1:49538497-49538516 Msa0734780:intron 35.0%
! ATATTCTGGGTGGATTTCAT+CGG - chr5_1:49538507-49538526 Msa0734780:intron 35.0%
!!! GGCATACCAGGTATTTTTTA+TGG - chr5_1:49538529-49538548 Msa0734780:intron 35.0%
!!! GTTTGGGCTAGGTTTTATTT+TGG - chr5_1:49538759-49538778 Msa0734780:intron 35.0%
TTGTTTGCTTTATGAGTGGA+AGG - chr5_1:49538882-49538901 Msa0734780:intron 35.0%
! TTCCTTTTTCTTGGAAGAGA+TGG - chr5_1:49538935-49538954 Msa0734780:CDS 35.0%
AACCATCTCTTCCAAGAAAA+AGG + chr5_1:49538940-49538959 None:intergenic 35.0%
!!! TCTATGCTTTTAGAGTTTGG+AGG - chr5_1:49538964-49538983 Msa0734780:CDS 35.0%
!!! CTATGCTTTTAGAGTTTGGA+GGG - chr5_1:49538965-49538984 Msa0734780:CDS 35.0%
!!! GGTTTGAGAGTTTTTTGTGA+TGG - chr5_1:49539054-49539073 Msa0734780:CDS 35.0%
!! ACTTGCTGTTGTAAATTCTC+TGG - chr5_1:49539214-49539233 Msa0734780:five_prime_UTR 35.0%
!! CTTGCTGTTGTAAATTCTCT+GGG - chr5_1:49539215-49539234 Msa0734780:five_prime_UTR 35.0%
! AGAGTTTATGGATTTTCCTG+TGG + chr5_1:49539350-49539369 None:intergenic 35.0%
! CTGACAAAGGCGACAAATTT+TGG - chr5_1:49533841-49533860 Msa0734780:intron 40.0%
! ACAAAGGCGACAAATTTTGG+TGG - chr5_1:49533844-49533863 Msa0734780:intron 40.0%
GAGGTAGTTCATCACATGTT+GGG + chr5_1:49533887-49533906 None:intergenic 40.0%
! GACTTGCTCTAATGTTTGCT+GGG + chr5_1:49533926-49533945 None:intergenic 40.0%
! AGACTTGCTCTAATGTTTGC+TGG + chr5_1:49533927-49533946 None:intergenic 40.0%
GGATACATTGGAGAGCAATT+TGG - chr5_1:49533987-49534006 Msa0734780:intron 40.0%
! GTGAATTAGGAACCCTTTTG+GGG - chr5_1:49534100-49534119 Msa0734780:intron 40.0%
! TGAATTAGGAACCCTTTTGG+GGG - chr5_1:49534101-49534120 Msa0734780:intron 40.0%
AAAATCTAGCACTAGAGTGG+TGG + chr5_1:49534203-49534222 None:intergenic 40.0%
! GAAGGATCAAAGGTGTATCA+AGG - chr5_1:49534247-49534266 Msa0734780:intron 40.0%
CAACATGAGTTAACTCACGT+AGG + chr5_1:49535197-49535216 None:intergenic 40.0%
! ATGTATTTGTTACGAACGCG+AGG + chr5_1:49535247-49535266 None:intergenic 40.0%
TCGCGTTCGTAACAAATACA+TGG - chr5_1:49535246-49535265 Msa0734780:intron 40.0%
ATGCACAAGGATCAATCCAA+TGG - chr5_1:49535446-49535465 Msa0734780:intron 40.0%
GTAGCAGCTTTACAACCTTA+CGG - chr5_1:49535478-49535497 Msa0734780:intron 40.0%
TACCAACGTGAGTTAACTCA+AGG - chr5_1:49535609-49535628 Msa0734780:intron 40.0%
AACCTTGAGTTAACTCACGT+TGG + chr5_1:49535614-49535633 None:intergenic 40.0%
!!! AACTCAAGCTGAGGGTATTT+TGG - chr5_1:49535651-49535670 Msa0734780:intron 40.0%
GGAAAATGCAAGAGAAGACT+AGG + chr5_1:49535776-49535795 None:intergenic 40.0%
!! AAGGTAATGGAGGAACTGAA+GGG + chr5_1:49535801-49535820 None:intergenic 40.0%
!! AAAGGTAATGGAGGAACTGA+AGG + chr5_1:49535802-49535821 None:intergenic 40.0%
TTCAGTTCCTCCATTACCTT+TGG - chr5_1:49535801-49535820 Msa0734780:intron 40.0%
! TGCATAACCAAAGGTAATGG+AGG + chr5_1:49535811-49535830 None:intergenic 40.0%
CACTGCATAACCAAAGGTAA+TGG + chr5_1:49535814-49535833 None:intergenic 40.0%
AATGTGCACTGCATAACCAA+AGG + chr5_1:49535820-49535839 None:intergenic 40.0%
TTGTATGTGTTCCCAAACTG+GGG + chr5_1:49536001-49536020 None:intergenic 40.0%
GAACACATACAAAATGCCAC+CGG - chr5_1:49536009-49536028 Msa0734780:intron 40.0%
TATGGAAGGAAAGAGATACC+TGG - chr5_1:49536055-49536074 Msa0734780:intron 40.0%
GTTTAGTGTAAAACTGGAGG+AGG + chr5_1:49536177-49536196 None:intergenic 40.0%
TTCATTCAACCATCTCGAGA+GGG - chr5_1:49536220-49536239 Msa0734780:intron 40.0%
AACTTGGCAAGCATGATCTT+CGG - chr5_1:49536302-49536321 Msa0734780:intron 40.0%
! ATCTTCGGGAAATTAGCTTG+AGG - chr5_1:49536317-49536336 Msa0734780:intron 40.0%
GGTCTATATAGATGACATGG+TGG - chr5_1:49536376-49536395 Msa0734780:intron 40.0%
AAGATTTCTTGTAGGTCTCG+GGG + chr5_1:49536428-49536447 None:intergenic 40.0%
CAAGATTTCTTGTAGGTCTC+GGG + chr5_1:49536429-49536448 None:intergenic 40.0%
CCAAGATTTCTTGTAGGTCT+CGG + chr5_1:49536430-49536449 None:intergenic 40.0%
CGAGACCTACAAGAAATCTT+GGG - chr5_1:49536428-49536447 Msa0734780:intron 40.0%
!!! TTTTCTAGCTTGGACTCCAA+AGG + chr5_1:49536498-49536517 None:intergenic 40.0%
TATTCGTGAGCATCAAGCTA+AGG + chr5_1:49536523-49536542 None:intergenic 40.0%
! TTAGCTTGATGCTCACGAAT+AGG - chr5_1:49536522-49536541 Msa0734780:intron 40.0%
! AGGAGCCCATAAAGTGTTAA+AGG - chr5_1:49536587-49536606 Msa0734780:intron 40.0%
GCTACTCCTACGTTCTAATA+AGG - chr5_1:49536764-49536783 Msa0734780:intron 40.0%
AGTAGGGGATTACCTTGATT+TGG + chr5_1:49536790-49536809 None:intergenic 40.0%
CGTGCAAAGGAAATAATCGA+TGG + chr5_1:49536825-49536844 None:intergenic 40.0%
TTGGGTTCAACAAGGGTTAT+TGG + chr5_1:49537089-49537108 None:intergenic 40.0%
CCACATATTGGGTTCAACAA+GGG + chr5_1:49537096-49537115 None:intergenic 40.0%
TCCACATATTGGGTTCAACA+AGG + chr5_1:49537097-49537116 None:intergenic 40.0%
TTGAGTAGTACCAGAAGAAC+TGG - chr5_1:49537160-49537179 Msa0734780:CDS 40.0%
CTTTACAATACCAAGAGACC+TGG - chr5_1:49537464-49537483 Msa0734780:intron 40.0%
! GTTATTGTTCCGTTGTTTCC+AGG + chr5_1:49537485-49537504 None:intergenic 40.0%
!!! CTTTGGTGCTTGGTTTTAGA+AGG + chr5_1:49537517-49537536 None:intergenic 40.0%
!! CTTCTAAAACCAAGCACCAA+AGG - chr5_1:49537515-49537534 Msa0734780:intron 40.0%
!! ACATACATTCCTTTGGTGCT+TGG + chr5_1:49537527-49537546 None:intergenic 40.0%
CTTAACTCCACCGAAGATTT+GGG + chr5_1:49537616-49537635 None:intergenic 40.0%
TCTTAACTCCACCGAAGATT+TGG + chr5_1:49537617-49537636 None:intergenic 40.0%
GGAAAACTGCATAAAAGAGG+AGG - chr5_1:49537681-49537700 Msa0734780:intron 40.0%
AGCAAAGAGAGTAACGTAGT+AGG - chr5_1:49537705-49537724 Msa0734780:intron 40.0%
CACTCTGTCTAGTAATAGAG+TGG + chr5_1:49537809-49537828 None:intergenic 40.0%
CACTCTATTACTAGACAGAG+TGG - chr5_1:49537807-49537826 Msa0734780:intron 40.0%
TATTCCCATGCATGAGCAAT+GGG - chr5_1:49537832-49537851 Msa0734780:intron 40.0%
GTCATACCGCAAAATGTAAC+CGG - chr5_1:49538127-49538146 Msa0734780:intron 40.0%
TCATACCGCAAAATGTAACC+GGG - chr5_1:49538128-49538147 Msa0734780:intron 40.0%
ATGATCAGACCATAACACAC+TGG + chr5_1:49538168-49538187 None:intergenic 40.0%
TATTGTTAAGGACATGTGGC+AGG + chr5_1:49538440-49538459 None:intergenic 40.0%
! TATTCTGGGTGGATTTCATC+GGG - chr5_1:49538508-49538527 Msa0734780:intron 40.0%
ATACTCCCAAACAAAGGCTT+AGG - chr5_1:49538724-49538743 Msa0734780:intron 40.0%
TACTCCCAAACAAAGGCTTA+GGG - chr5_1:49538725-49538744 Msa0734780:intron 40.0%
GGCAAAGAACCACTTTGAAT+TGG + chr5_1:49538845-49538864 None:intergenic 40.0%
AGGTGAGGCTAATTCTCTAT+TGG - chr5_1:49538902-49538921 Msa0734780:CDS 40.0%
CCACTACCAAGTAAACAACA+GGG + chr5_1:49539033-49539052 None:intergenic 40.0%
ACCACTACCAAGTAAACAAC+AGG + chr5_1:49539034-49539053 None:intergenic 40.0%
!! TGTTGTTTACTTGGTAGTGG+TGG - chr5_1:49539033-49539052 Msa0734780:CDS 40.0%
! CTCTGTTTACCTTTTGTTGG+CGG - chr5_1:49539161-49539180 Msa0734780:five_prime_UTR 40.0%
ATCCATAAACTCTATGCCAG+AGG - chr5_1:49539357-49539376 Msa0734780:five_prime_UTR 40.0%
! GATTGGTCGAGATCTGACAA+AGG - chr5_1:49533828-49533847 Msa0734780:CDS 45.0%
!! AAGGCGACAAATTTTGGTGG+CGG - chr5_1:49533847-49533866 Msa0734780:intron 45.0%
GGAGGTAGTTCATCACATGT+TGG + chr5_1:49533888-49533907 None:intergenic 45.0%
! GCTCTAATGTTTGCTGGGAT+CGG + chr5_1:49533921-49533940 None:intergenic 45.0%
TGCTACGAGGACTCTTCTTT+AGG - chr5_1:49534024-49534043 Msa0734780:intron 45.0%
TTCCGGTCAAGAAATGATGG+CGG - chr5_1:49534223-49534242 Msa0734780:intron 45.0%
ACGTGAGTTAACTCAAGCTG+AGG - chr5_1:49535642-49535661 Msa0734780:intron 45.0%
CGTGAGTTAACTCAAGCTGA+GGG - chr5_1:49535643-49535662 Msa0734780:intron 45.0%
!! AGGTAATGGAGGAACTGAAG+GGG + chr5_1:49535800-49535819 None:intergenic 45.0%
TACAAAATGCCACCGGAAGA+CGG - chr5_1:49536016-49536035 Msa0734780:intron 45.0%
TTCCAGATAAACCCGTCTTC+CGG + chr5_1:49536031-49536050 None:intergenic 45.0%
! GCTTCAACCCGAGGTATTTA+TGG - chr5_1:49536077-49536096 Msa0734780:intron 45.0%
CTTCATTCAACCATCTCGAG+AGG - chr5_1:49536219-49536238 Msa0734780:intron 45.0%
TCTTGATTTCCCTCTCGAGA+TGG + chr5_1:49536232-49536251 None:intergenic 45.0%
ATCTCGAGAGGGAAATCAAG+AGG - chr5_1:49536231-49536250 Msa0734780:intron 45.0%
GAAGATCATGCTTGCCAAGT+TGG + chr5_1:49536303-49536322 None:intergenic 45.0%
ACTTGGCAAGCATGATCTTC+GGG - chr5_1:49536303-49536322 Msa0734780:intron 45.0%
! TCGGGAAATTAGCTTGAGGT+AGG - chr5_1:49536321-49536340 Msa0734780:intron 45.0%
! AATTAGCTTGAGGTAGGACG+TGG - chr5_1:49536327-49536346 Msa0734780:intron 45.0%
TGGTGAAGACCGATGAAGTA+TGG - chr5_1:49536396-49536415 Msa0734780:intron 45.0%
! GGGTTGACTCCATACTTCAT+CGG + chr5_1:49536408-49536427 None:intergenic 45.0%
CCGAGACCTACAAGAAATCT+TGG - chr5_1:49536427-49536446 Msa0734780:intron 45.0%
CGGAACCCAAGATTTCTTGT+AGG + chr5_1:49536436-49536455 None:intergenic 45.0%
CTTGATCTAACACCGTGCAA+AGG + chr5_1:49536838-49536857 None:intergenic 45.0%
GAGCTTAGTCGTAGTAACGA+CGG + chr5_1:49536953-49536972 None:intergenic 45.0%
CCCTTGTTGAACCCAATATG+TGG - chr5_1:49537093-49537112 Msa0734780:intron 45.0%
GAAACTTCGTCCAGTTCTTC+TGG + chr5_1:49537173-49537192 None:intergenic 45.0%
TCCAAGGGAACTAAACTGCA+AGG - chr5_1:49537424-49537443 Msa0734780:intron 45.0%
ACCAAGAGACCTGGAAACAA+CGG - chr5_1:49537473-49537492 Msa0734780:intron 45.0%
GTAATGTGTGGTAGTCACGT+TGG - chr5_1:49537736-49537755 Msa0734780:intron 45.0%
! TCACGTTGGTGGAAGATCTT+TGG - chr5_1:49537750-49537769 Msa0734780:intron 45.0%
CTATTCCCATGCATGAGCAA+TGG - chr5_1:49537831-49537850 Msa0734780:intron 45.0%
TTGACCCATTGCTCATGCAT+GGG + chr5_1:49537839-49537858 None:intergenic 45.0%
ATTGACCCATTGCTCATGCA+TGG + chr5_1:49537840-49537859 None:intergenic 45.0%
TTAGATTGAGGTAGAGCCAG+TGG - chr5_1:49537898-49537917 Msa0734780:intron 45.0%
! CTCTTCCCGGTTACATTTTG+CGG + chr5_1:49538136-49538155 None:intergenic 45.0%
ATCAGACCATAACACACTGG+CGG + chr5_1:49538165-49538184 None:intergenic 45.0%
AATTATATGCGTGTCGAGCC+AGG - chr5_1:49538350-49538369 Msa0734780:intron 45.0%
!! AGTTGATGAAGTAGGCATGG+TGG + chr5_1:49538485-49538504 None:intergenic 45.0%
ACTCCCAAACAAAGGCTTAG+GGG - chr5_1:49538726-49538745 Msa0734780:intron 45.0%
! GAACCCCTAAGCCTTTGTTT+GGG + chr5_1:49538732-49538751 None:intergenic 45.0%
CAAACAAAGGCTTAGGGGTT+CGG - chr5_1:49538731-49538750 Msa0734780:intron 45.0%
TTAGGGGTTCGGAGATAGTT+TGG - chr5_1:49538742-49538761 Msa0734780:intron 45.0%
TAGGGGTTCGGAGATAGTTT+GGG - chr5_1:49538743-49538762 Msa0734780:intron 45.0%
TGCTTTATGAGTGGAAGGTG+AGG - chr5_1:49538887-49538906 Msa0734780:intron 45.0%
! TTAGAGTTTGGAGGGTGCAT+AGG - chr5_1:49538973-49538992 Msa0734780:CDS 45.0%
ACCACCAACTAGAAAGACCT+CGG + chr5_1:49539002-49539021 None:intergenic 45.0%
! TCATCGCCCTGTTGTTTACT+TGG - chr5_1:49539024-49539043 Msa0734780:CDS 45.0%
! CCCTGTTGTTTACTTGGTAG+TGG - chr5_1:49539030-49539049 Msa0734780:CDS 45.0%
AAACAACACTGCAACCTGAG+AGG + chr5_1:49539132-49539151 None:intergenic 45.0%
! GTTTACCTTTTGTTGGCGGT+AGG - chr5_1:49539165-49539184 Msa0734780:five_prime_UTR 45.0%
CATGTGATGAACTACCTCCG+TGG - chr5_1:49533889-49533908 Msa0734780:intron 50.0%
!! GAACCCTTTTGGGGGATGAT+TGG - chr5_1:49534109-49534128 Msa0734780:intron 50.0%
GAGCCAATCATCCCCCAAAA+GGG + chr5_1:49534115-49534134 None:intergenic 50.0%
TCCGGTCAAGAAATGATGGC+GGG - chr5_1:49534224-49534243 Msa0734780:intron 50.0%
!! TCAAGAAATGATGGCGGGGA+AGG - chr5_1:49534229-49534248 Msa0734780:intron 50.0%
TACCTTTCTCCTGGTTGCGA+GGG + chr5_1:49534301-49534320 None:intergenic 50.0%
ATACCTTTCTCCTGGTTGCG+AGG + chr5_1:49534302-49534321 None:intergenic 50.0%
! TGTTACGAACGCGAGGTGTT+CGG + chr5_1:49535240-49535259 None:intergenic 50.0%
TAATGGAGGAACTGAAGGGG+AGG + chr5_1:49535797-49535816 None:intergenic 50.0%
TGTGTTCCCAAACTGGGGTT+CGG + chr5_1:49535996-49536015 None:intergenic 50.0%
ACAAAATGCCACCGGAAGAC+GGG - chr5_1:49536017-49536036 Msa0734780:intron 50.0%
!! AAATACCTCGGGTTGAAGCC+AGG + chr5_1:49536076-49536095 None:intergenic 50.0%
GGGAAACATGTCGACCAACT+TGG - chr5_1:49536286-49536305 Msa0734780:intron 50.0%
! GCCTTGCAGTTTAGTTCCCT+TGG + chr5_1:49537428-49537447 None:intergenic 50.0%
! TCCGTTGTTTCCAGGTCTCT+TGG + chr5_1:49537477-49537496 None:intergenic 50.0%
ATGTGTGGTAGTCACGTTGG+TGG - chr5_1:49537739-49537758 Msa0734780:intron 50.0%
TCTTCCATGATGGTAGCCAC+TGG + chr5_1:49537917-49537936 None:intergenic 50.0%
GCGTAGTTGCTCTTCCATGA+TGG + chr5_1:49537927-49537946 None:intergenic 50.0%
CATGGAAGAGCAACTACGCA+TGG - chr5_1:49537928-49537947 Msa0734780:intron 50.0%
CGCAAAATGTAACCGGGAAG+AGG - chr5_1:49538134-49538153 Msa0734780:intron 50.0%
TCAGACCATAACACACTGGC+GGG + chr5_1:49538164-49538183 None:intergenic 50.0%
TGGATTTCATCGGGCATACC+AGG - chr5_1:49538517-49538536 Msa0734780:intron 50.0%
CGAACCCCTAAGCCTTTGTT+TGG + chr5_1:49538733-49538752 None:intergenic 50.0%
GTTCGGAGATAGTTTGGGCT+AGG - chr5_1:49538748-49538767 Msa0734780:intron 50.0%
! GCTTCCGAGGTCTTTCTAGT+TGG - chr5_1:49538995-49539014 Msa0734780:CDS 50.0%
!! TCCGAGGTCTTTCTAGTTGG+TGG - chr5_1:49538998-49539017 Msa0734780:CDS 50.0%
AACACAAACCCACACGAGGT+CGG + chr5_1:49539082-49539101 None:intergenic 50.0%
ACCTCGTGTGGGTTTGTGTT+GGG - chr5_1:49539082-49539101 Msa0734780:exon 50.0%
AAAGGCCTACCGCCAACAAA+AGG + chr5_1:49539173-49539192 None:intergenic 50.0%
GGCCTCTGGCATAGAGTTTA+TGG + chr5_1:49539362-49539381 None:intergenic 50.0%
GGAGCCAATCATCCCCCAAA+AGG + chr5_1:49534116-49534135 None:intergenic 55.0%
CCCCGCCATCATTTCTTGAC+CGG + chr5_1:49534228-49534247 None:intergenic 55.0%
! CCGGTCAAGAAATGATGGCG+GGG - chr5_1:49534225-49534244 Msa0734780:intron 55.0%
!! TGATGGCGGGGAAGGATCAA+AGG - chr5_1:49534237-49534256 Msa0734780:intron 55.0%
! GAAGTATCACCCTCGCAACC+AGG - chr5_1:49534289-49534308 Msa0734780:intron 55.0%
ATCTCTCCCGAACCCCAGTT+TGG - chr5_1:49535986-49536005 Msa0734780:intron 55.0%
TCTCTCCCGAACCCCAGTTT+GGG - chr5_1:49535987-49536006 Msa0734780:intron 55.0%
GTGTTCCCAAACTGGGGTTC+GGG + chr5_1:49535995-49536014 None:intergenic 55.0%
CAGATAAACCCGTCTTCCGG+TGG + chr5_1:49536028-49536047 None:intergenic 55.0%
! CACCGGAAGACGGGTTTATC+TGG - chr5_1:49536026-49536045 Msa0734780:intron 55.0%
AGATACCTGGCTTCAACCCG+AGG - chr5_1:49536068-49536087 Msa0734780:intron 55.0%
TGCTATCCTCACAGCTCGAG+AGG - chr5_1:49536265-49536284 Msa0734780:intron 55.0%
GCTATCCTCACAGCTCGAGA+GGG - chr5_1:49536266-49536285 Msa0734780:intron 55.0%
TGTTTCCCTCTCGAGCTGTG+AGG + chr5_1:49536274-49536293 None:intergenic 55.0%
AGAGGGAGCTTCGAACCTCA+AGG - chr5_1:49537127-49537146 Msa0734780:CDS 55.0%
GAGGGAGCTTCGAACCTCAA+GGG - chr5_1:49537128-49537147 Msa0734780:CDS 55.0%
AGAGCCAGTGGCTACCATCA+TGG - chr5_1:49537910-49537929 Msa0734780:intron 55.0%
GATCTCCCGCCAGTGTGTTA+TGG - chr5_1:49538156-49538175 Msa0734780:intron 55.0%
GACCTCGTGTGGGTTTGTGT+TGG - chr5_1:49539081-49539100 Msa0734780:exon 55.0%
ACCCAACACAAACCCACACG+AGG + chr5_1:49539086-49539105 None:intergenic 55.0%
TCGTGTGGGTTTGTGTTGGG+TGG - chr5_1:49539085-49539104 Msa0734780:exon 55.0%
CGTGTGGGTTTGTGTTGGGT+GGG - chr5_1:49539086-49539105 Msa0734780:exon 55.0%
GTGTGGGTTTGTGTTGGGTG+GGG - chr5_1:49539087-49539106 Msa0734780:exon 55.0%
AGAGGCCATGTTAGCTGCTC+CGG - chr5_1:49539375-49539394 Msa0734780:five_prime_UTR 55.0%
GCTGGGATCGGCAAACTCCA+CGG + chr5_1:49533909-49533928 None:intergenic 60.0%
! AGTGGTGGCGATCGTTCCCT+TGG + chr5_1:49534188-49534207 None:intergenic 60.0%
CACCCTCGCAACCAGGAGAA+AGG - chr5_1:49534296-49534315 Msa0734780:intron 60.0%
GGAGCTTCGAACCTCAAGGG+AGG - chr5_1:49537131-49537150 Msa0734780:CDS 60.0%
GCTTCGAACCTCAAGGGAGG+TGG - chr5_1:49537134-49537153 Msa0734780:CDS 60.0%
CTCAAGCTCCACCTCCCTTG+AGG + chr5_1:49537145-49537164 None:intergenic 60.0%
GGTTTGTGTTGGGTGGGGTC+CGG - chr5_1:49539092-49539111 Msa0734780:five_prime_UTR 60.0%
GTTTGTGTTGGGTGGGGTCC+GGG - chr5_1:49539093-49539112 Msa0734780:five_prime_UTR 60.0%
TTTGTGTTGGGTGGGGTCCG+GGG - chr5_1:49539094-49539113 Msa0734780:five_prime_UTR 60.0%
AGAGGCCAAACAAACGCCCC+CGG + chr5_1:49539114-49539133 None:intergenic 60.0%
GGGCGTTTGTTTGGCCTCTC+AGG - chr5_1:49539115-49539134 Msa0734780:five_prime_UTR 60.0%
GGAGCAGCTAACATGGCCTC+TGG + chr5_1:49539376-49539395 None:intergenic 60.0%
ATCCGCCGGAGCAGCTAACA+TGG + chr5_1:49539383-49539402 None:intergenic 60.0%
ATGTTAGCTGCTCCGGCGGA+TGG - chr5_1:49539382-49539401 Msa0734780:five_prime_UTR 60.0%
GGGATCGGCAAACTCCACGG+AGG + chr5_1:49533906-49533925 None:intergenic 65.0%
CTGGCGGGAGATCCTCTTCC+CGG + chr5_1:49538149-49538168 None:intergenic 65.0%
! GGAGGGTGCATAGGCTTCCG+AGG - chr5_1:49538982-49539001 Msa0734780:CDS 65.0%
TGATGGGGCCGACCTCGTGT+GGG - chr5_1:49539071-49539090 Msa0734780:exon 65.0%
TTGTGTTGGGTGGGGTCCGG+GGG - chr5_1:49539095-49539114 Msa0734780:five_prime_UTR 65.0%
GGCCATGTTAGCTGCTCCGG+CGG - chr5_1:49539378-49539397 Msa0734780:five_prime_UTR 65.0%
TTAGCTGCTCCGGCGGATGG+TGG - chr5_1:49539385-49539404 Msa0734780:five_prime_UTR 65.0%
TAGCTGCTCCGGCGGATGGT+GGG - chr5_1:49539386-49539405 Msa0734780:five_prime_UTR 65.0%
GGATGATGCCCACCATCCGC+CGG + chr5_1:49539397-49539416 None:intergenic 65.0%
! GTGATGGGGCCGACCTCGTG+TGG - chr5_1:49539070-49539089 Msa0734780:exon 70.0%
!! GGGGTCCGGGGGCGTTTGTT+TGG - chr5_1:49539106-49539125 Msa0734780:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 49533791 49539420 49533791 ID=Msa0734780;Name=Msa0734780
chr5_1 mRNA 49533791 49539420 49533791 ID=Msa0734780-mRNA-1;Parent=Msa0734780;Name=Msa0734780-mRNA-1;_AED=0.27;_eAED=0.27;_QI=333|0.66|0.5|0.75|0.33|0.5|4|0|206
chr5_1 exon 49533791 49533858 49533791 ID=Msa0734780-mRNA-1:exon:14037;Parent=Msa0734780-mRNA-1
chr5_1 exon 49534673 49534887 49534673 ID=Msa0734780-mRNA-1:exon:14036;Parent=Msa0734780-mRNA-1
chr5_1 exon 49537122 49537262 49537122 ID=Msa0734780-mRNA-1:exon:14035;Parent=Msa0734780-mRNA-1
chr5_1 exon 49538894 49539420 49538894 ID=Msa0734780-mRNA-1:exon:14034;Parent=Msa0734780-mRNA-1
chr5_1 five_prime_UTR 49539088 49539420 49539088 ID=Msa0734780-mRNA-1:five_prime_utr;Parent=Msa0734780-mRNA-1
chr5_1 CDS 49538894 49539087 49538894 ID=Msa0734780-mRNA-1:cds;Parent=Msa0734780-mRNA-1
chr5_1 CDS 49537122 49537262 49537122 ID=Msa0734780-mRNA-1:cds;Parent=Msa0734780-mRNA-1
chr5_1 CDS 49534673 49534887 49534673 ID=Msa0734780-mRNA-1:cds;Parent=Msa0734780-mRNA-1
chr5_1 CDS 49533791 49533858 49533791 ID=Msa0734780-mRNA-1:cds;Parent=Msa0734780-mRNA-1
Gene Sequence

>Msa0734780

ATGATTGGCTCCAAAAACTCGCTGAGAAAGTTTGGGATTACCATACACAATATAAAAAAAACCAAGGGAACGATCGCCACCACTCTAGTGCTAGATTTTTTCCGGTCAAGAAATGATGGCGGGGAAGGATCAAAGGTGTATCAAGGAGATCATATGAAAGAAATAGAAGTATCACCCTCGCAACCAGGAGAAAGGAGAAAGAAATTGGAGACAGAGATAATAACAATAGTGATCTCTCCCGAACCCCAGTTTGGGAACACATACAAAATGCCACCGGAAGACGGGTTTATCTGGAAAGAATATGGAAGGAAAGAGATACCTGGCTTCAACCCGAGGAGTTACTACAGGTGCAACCACATGAAATTATATGCGTGTCGAGCCAGGAAGAAAGTACAACAACTTGGTGACCATCCAAACATATTTGAAGTTATATACAACGGTGGACATACCTGCCACATGTCCTTAACAATACCATCAATGGATGTTACTCAAACCACCATGCCTACTTCATCAACTTTATATTCTGGGTGGATTTCATCGGGCATACCAGGAAAATCCATAAACTCTATGCCAGAGGCCATGTTAGCTGCTCCGGCGGATGGTGGGCATCATCCTATG
Protein sequence

>Msa0734780

MIGSKNSLRKFGITIHNIKKTKGTIATTLVLDFFRSRNDGGEGSKVYQGDHMKEIEVSPSQPGERRKKLETEIITIVISPEPQFGNTYKMPPEDGFIWKEYGRKEIPGFNPRSYYRCNHMKLYACRARKKVQQLGDHPNIFEVIYNGGHTCHMSLTIPSMDVTQTTMPTSSTLYSGWISSGIPGKSINSMPEAMLAAPADGGHHPM