AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0854630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854630 MtrunA17_Chr5g0431811 75.377 199 29 5 20 199 594 791 1.54e-92 291
Msa0854630 MtrunA17_Chr3g0126391 44.118 68 37 1 91 157 131 198 7.16e-16 74.7
Msa0854630 MtrunA17_Chr8g0387981 48.387 62 31 1 91 151 130 191 7.53e-14 68.9
Msa0854630 MtrunA17_Chr3g0128671 30.357 168 79 7 6 160 53 195 2.35e-13 67.4
Msa0854630 MtrunA17_Chr7g0244971 43.750 64 35 1 91 153 121 184 8.91e-13 65.5
Msa0854630 MtrunA17_Chr7g0244981 42.424 66 37 1 89 153 118 183 1.44e-12 65.1
Msa0854630 MtrunA17_Chr8g0347251 46.032 63 33 1 93 154 136 198 1.37e-11 62.4
Msa0854630 MtrunA17_Chr7g0275531 43.284 67 37 1 93 158 118 184 1.85e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854630 AT2G40740.1 39.568 139 78 4 60 197 142 275 1.89e-25 100
Msa0854630 AT2G40740.3 39.568 139 78 4 60 197 151 284 2.47e-25 100
Msa0854630 AT2G46400.1 33.858 127 74 4 54 176 67 187 4.20e-16 75.5
Msa0854630 AT4G11070.2 40.625 96 52 2 64 158 84 175 1.81e-14 70.5
Msa0854630 AT4G11070.1 40.625 96 52 2 64 158 116 207 2.40e-14 70.5
Msa0854630 AT4G23810.1 40.000 95 52 2 63 156 132 222 2.68e-14 70.5
Msa0854630 AT3G56400.1 43.284 67 37 1 93 158 120 186 2.03e-13 67.8
Msa0854630 AT2G40740.2 38.372 86 50 1 112 197 149 231 3.25e-13 66.6
Msa0854630 AT5G22570.1 39.706 68 40 1 94 160 111 178 1.36e-12 65.5
Msa0854630 AT5G24110.1 28.000 175 107 6 1 168 21 183 1.65e-12 65.5
Msa0854630 AT1G66560.1 44.444 63 32 2 92 152 102 163 2.11e-12 64.3
Msa0854630 AT1G66550.2 42.188 64 36 1 90 152 100 163 2.53e-12 64.3
Msa0854630 AT1G66550.1 42.188 64 36 1 90 152 105 168 2.71e-12 64.3
Msa0854630 AT2G37260.1 42.500 80 38 3 93 171 349 421 4.73e-11 61.6
Msa0854630 AT2G37260.3 42.500 80 38 3 93 171 269 341 5.16e-11 61.2
Msa0854630 AT2G40750.1 43.333 60 33 1 93 151 152 211 5.21e-11 61.2
Msa0854630 AT2G37260.2 42.500 80 38 3 93 171 267 339 5.48e-11 61.2
Msa0854630 AT1G66600.1 38.667 75 37 2 79 152 97 163 6.17e-11 60.5

Find 89 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCCTCTGGCATAGAGTTTA+TGG 0.171782 5_4:-47291533 None:intergenic
AACAATTAGGGACATATTTA+AGG 0.175778 5_4:+47285628 Msa0854630:five_prime_UTR
CTGACAAAGGCGACAAATTT+TGG 0.195810 5_4:+47285677 Msa0854630:five_prime_UTR
TTCAAAGATTCGTAGAATTA+TGG 0.204532 5_4:+47285802 Msa0854630:five_prime_UTR
TTCATCACATGTTGGGTAAT+TGG 0.206411 5_4:-47285713 None:intergenic
ACTTCGTCAACTTTATATTC+TGG 0.243467 5_4:+47290695 Msa0854630:CDS
GGTTCCTAATTCATTATCTT+TGG 0.263537 5_4:-47285927 None:intergenic
ATGACCAAAGATAATGAATT+AGG 0.294145 5_4:+47285923 Msa0854630:five_prime_UTR
AGAGACTGGGGAAAACAATT+AGG 0.294854 5_4:+47285615 None:intergenic
TAATGGCAGGAGAAAGAAAT+TGG 0.297328 5_4:+47287776 Msa0854630:intron
GGATACATTGGAGAGCAATT+TGG 0.317424 5_4:+47285823 Msa0854630:five_prime_UTR
AAGTTGTTGTACTTTCTTCC+TGG 0.317889 5_4:-47290570 None:intergenic
CTTCGTCAACTTTATATTCT+GGG 0.329976 5_4:+47290696 Msa0854630:CDS
TAATGAATTAGGAACCCTTT+TGG 0.331804 5_4:+47285934 Msa0854630:five_prime_UTR
TGCTACGAGGACTCTTCTTT+AGG 0.341531 5_4:+47285860 Msa0854630:five_prime_UTR
TATATAACTTCAAATATGTT+TGG 0.345904 5_4:-47290602 None:intergenic
CACCGGAAGACGGGTTTATC+TGG 0.355975 5_4:+47287862 Msa0854630:CDS
TGTGTTCCCAAACTGGGGTT+CGG 0.363263 5_4:-47287829 None:intergenic
ATCTCTCCCGAACCCCAGTT+TGG 0.364203 5_4:+47287822 Msa0854630:CDS
AGACTTGCTCTAATGTTTGC+TGG 0.368138 5_4:-47285760 None:intergenic
GGGTTTATCTGGAAAGAATA+TGG 0.380541 5_4:+47287873 Msa0854630:CDS
TCATCACATGTTGGGTAATT+GGG 0.383234 5_4:-47285712 None:intergenic
ATCCATTGATGGTATTGTTA+AGG 0.387780 5_4:-47290651 None:intergenic
CCCCGCCATCATTTCTTGAC+CGG 0.393350 5_4:-47286061 None:intergenic
GTGTTCCCAAACTGGGGTTC+GGG 0.408159 5_4:-47287828 None:intergenic
TAGGGACATATTTAAGGAGT+TGG 0.415790 5_4:+47285634 Msa0854630:five_prime_UTR
AAGGAGTTGGAGTATTTGAT+TGG 0.419385 5_4:+47285647 Msa0854630:five_prime_UTR
AAAACTCGCTGAGAAAGTTT+GGG 0.424967 5_4:+47285973 Msa0854630:CDS
TTCCAGATAAACCCGTCTTC+CGG 0.427566 5_4:-47287864 None:intergenic
ATATTCTGGGTGGATTTCAT+CGG 0.427674 5_4:+47290709 Msa0854630:CDS
TTTGTATGTGTTCCCAAACT+GGG 0.440270 5_4:-47287835 None:intergenic
TCTCTCCCGAACCCCAGTTT+GGG 0.442895 5_4:+47287823 Msa0854630:CDS
TATTCTGGGTGGATTTCATC+GGG 0.444409 5_4:+47290710 Msa0854630:CDS
AGTGGTGGCGATCGTTCCCT+TGG 0.462989 5_4:-47286021 None:intergenic
GTTTGAGTAACATCCATTGA+TGG 0.463141 5_4:-47290662 None:intergenic
TTTGTTTCAGGAGTTACTAC+AGG 0.465753 5_4:+47290516 Msa0854630:intron
GTCCTTAACAATACCATCAA+TGG 0.466957 5_4:+47290649 Msa0854630:CDS
AATTATATGCGTGTCGAGCC+AGG 0.475350 5_4:+47290552 Msa0854630:CDS
TGGATTTCATCGGGCATACC+AGG 0.487949 5_4:+47290719 Msa0854630:CDS
TTAGCTGCTCCGACGGATGG+TGG 0.488050 5_4:+47291559 Msa0854630:CDS
GACTTGCTCTAATGTTTGCT+GGG 0.491728 5_4:-47285759 None:intergenic
GAGACTGGGGAAAACAATTA+GGG 0.498215 5_4:+47285616 None:intergenic
TACAAAATGCCACCGGAAGA+CGG 0.501523 5_4:+47287852 Msa0854630:CDS
CACCCTCGCAACCAGGAGAA+AGG 0.510246 5_4:+47286132 Msa0854630:CDS
ACAAAATGCCACCGGAAGAC+GGG 0.511101 5_4:+47287853 Msa0854630:CDS
ATGTTAGCTGCTCCGACGGA+TGG 0.511981 5_4:+47291556 Msa0854630:CDS
TCCGGTCAAGAAATGATGGC+GGG 0.512447 5_4:+47286060 Msa0854630:CDS
GAATATAAAGTTGACGAAGT+AGG 0.519575 5_4:-47290692 None:intergenic
TACCTTTCTCCTGGTTGCGA+GGG 0.522243 5_4:-47286134 None:intergenic
TCAAGAAATGATGGCGGGGA+AGG 0.522448 5_4:+47286065 Msa0854630:CDS
GAGGTAGTTCATCACATGTT+GGG 0.528887 5_4:-47285720 None:intergenic
GGAGCAGCTAACATGGCCTC+TGG 0.529383 5_4:-47291547 None:intergenic
ATACCTTTCTCCTGGTTGCG+AGG 0.537516 5_4:-47286135 None:intergenic
AAATACCTCGGGTTGAAGCC+AGG 0.538543 5_4:-47287909 None:intergenic
TAACTTCAAATATGTTTGGA+TGG 0.540945 5_4:-47290598 None:intergenic
GGCCATGTTAGCTGCTCCGA+CGG 0.545472 5_4:+47291552 Msa0854630:CDS
TCGTAGAATTATGGATACAT+TGG 0.561410 5_4:+47285811 Msa0854630:five_prime_UTR
GAAGGATCAAAGGTGTATCA+AGG 0.565861 5_4:+47286083 Msa0854630:CDS
TAGCTGCTCCGACGGATGGT+GGG 0.569296 5_4:+47291560 Msa0854630:CDS
ATCCGTCGGAGCAGCTAACA+TGG 0.572394 5_4:-47291554 None:intergenic
TGATGGCGGGGAAGGATCAA+AGG 0.572892 5_4:+47286073 Msa0854630:CDS
GAAGTATCACCCTCGCAACC+AGG 0.581020 5_4:+47286125 Msa0854630:CDS
GGAGGTAGTTCATCACATGT+TGG 0.586269 5_4:-47285721 None:intergenic
CAGATAAACCCGTCTTCCGG+TGG 0.589083 5_4:-47287861 None:intergenic
TATTGTTAAGGACATGCGGC+AGG 0.597318 5_4:-47290639 None:intergenic
TTATCTGGAAAGAATATGGA+AGG 0.599335 5_4:+47287877 Msa0854630:CDS
TTGTATGTGTTCCCAAACTG+GGG 0.599512 5_4:-47287834 None:intergenic
TAAAGTTGACGAAGTAGGCA+TGG 0.601902 5_4:-47290687 None:intergenic
ACGAATCTTTGAAGAAAGTG+AGG 0.606278 5_4:-47285792 None:intergenic
AGGAAGAAAGTACAACAACT+TGG 0.610203 5_4:+47290572 Msa0854630:CDS
CGTCAACTTTATATTCTGGG+TGG 0.614331 5_4:+47290699 Msa0854630:CDS
GACACGCATATAATTTCATG+TGG 0.627518 5_4:-47290544 None:intergenic
TTCCGGTCAAGAAATGATGG+CGG 0.631799 5_4:+47286059 Msa0854630:CDS
AGATACCTGGCTTCAACCCG+AGG 0.632242 5_4:+47287904 Msa0854630:CDS
ATGGTATTGTTAAGGACATG+CGG 0.637436 5_4:-47290643 None:intergenic
AAAATCTAGCACTAGAGTGG+TGG 0.640432 5_4:-47286036 None:intergenic
ATCCATAAACTCTATGCCAG+AGG 0.646131 5_4:+47291531 Msa0854630:CDS
GGATGATGCCCACCATCCGT+CGG 0.648793 5_4:-47291568 None:intergenic
TATGGAAGGAAAGAGATACC+TGG 0.657804 5_4:+47287891 Msa0854630:CDS
GCTGGGATCAGCAAACTCCA+CGG 0.659970 5_4:-47285742 None:intergenic
CCGGTCAAGAAATGATGGCG+GGG 0.666039 5_4:+47286061 Msa0854630:CDS
TTTGAAGTTATATACAACGG+TGG 0.672572 5_4:+47290611 Msa0854630:CDS
GAACACATACAAAATGCCAC+CGG 0.673182 5_4:+47287845 Msa0854630:CDS
TCATCTCAACTATATATGTG+TGG 0.676518 5_4:-47285904 None:intergenic
ATATTTGAAGTTATATACAA+CGG 0.679230 5_4:+47290608 Msa0854630:CDS
GATTGGTCGAGATCTGACAA+AGG 0.707472 5_4:+47285664 Msa0854630:five_prime_UTR
AGTTGACGAAGTAGGCATGG+TGG 0.721158 5_4:-47290684 None:intergenic
CATGTGATGAACTACCTCCG+TGG 0.736681 5_4:+47285725 Msa0854630:five_prime_UTR
GGGATCAGCAAACTCCACGG+AGG 0.794892 5_4:-47285739 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAATAAAAAAATA+AGG + chr5_4:47290258-47290277 Msa0854630:intron 0.0%
!! TTATAATGATATCTTTATAT+CGG + chr5_4:47287566-47287585 Msa0854630:intron 10.0%
!! TAATTGTAAATAGAAATATA+TGG - chr5_4:47287754-47287773 None:intergenic 10.0%
!! TTCTATTTACAATTAATTAA+TGG + chr5_4:47287759-47287778 Msa0854630:intron 10.0%
!!! ATTAAGTAATTAATTTTGTT+AGG + chr5_4:47287939-47287958 Msa0854630:intron 10.0%
!!! AGAAAAATGAAATTTTTTAA+TGG + chr5_4:47288532-47288551 Msa0854630:intron 10.0%
!! TAAACAAAACAAAAAAAATA+AGG - chr5_4:47288890-47288909 None:intergenic 10.0%
!!! AACTCTAAAAATATTACTAA+TGG - chr5_4:47286600-47286619 None:intergenic 15.0%
!! TAACGTATATTTAAGAATAA+AGG + chr5_4:47287723-47287742 Msa0854630:intron 15.0%
!!! ACAAATTTTGTATTTTCTAA+CGG - chr5_4:47288292-47288311 None:intergenic 15.0%
!!! AAATTTCATTTTTCTAAGAA+TGG - chr5_4:47288527-47288546 None:intergenic 15.0%
!! AAAACAAAAAAAATAAGGTT+AGG - chr5_4:47288885-47288904 None:intergenic 15.0%
!! ATTAAATTACATTATAGTCT+AGG + chr5_4:47289495-47289514 Msa0854630:intron 15.0%
!! TTAAATTACATTATAGTCTA+GGG + chr5_4:47289496-47289515 Msa0854630:intron 15.0%
!!! TTTTTATATGCATAAACATA+AGG - chr5_4:47290245-47290264 None:intergenic 15.0%
!! TATATAACTTCAAATATGTT+TGG - chr5_4:47290605-47290624 None:intergenic 15.0%
!! ATATATATATATAGCGAAAA+GGG - chr5_4:47291450-47291469 None:intergenic 15.0%
!! TATATATATATATAGCGAAA+AGG - chr5_4:47291451-47291470 None:intergenic 15.0%
!!! GGTTTTTTTTATATTGTGTA+TGG - chr5_4:47286003-47286022 None:intergenic 20.0%
!! ACACAATATAAAAAAAACCA+AGG + chr5_4:47286004-47286023 Msa0854630:CDS 20.0%
!! CACAATATAAAAAAAACCAA+GGG + chr5_4:47286005-47286024 Msa0854630:CDS 20.0%
!! TAATAAAATTCTAGACCAAA+AGG + chr5_4:47286399-47286418 Msa0854630:intron 20.0%
!!! CACTTTTTTTTTTTTCCTTT+TGG - chr5_4:47286417-47286436 None:intergenic 20.0%
!!! ACGAATTTGTTTAATACAAT+AGG + chr5_4:47286461-47286480 Msa0854630:intron 20.0%
!!! CACTTTTTTTTAACAAATAG+AGG - chr5_4:47286523-47286542 None:intergenic 20.0%
!! TTCCAATGTAAAATTATTCA+TGG + chr5_4:47286571-47286590 Msa0854630:intron 20.0%
!!! AACCATGAATAATTTTACAT+TGG - chr5_4:47286576-47286595 None:intergenic 20.0%
!!! TAGTAATATTTTTAGAGTTG+CGG + chr5_4:47286601-47286620 Msa0854630:intron 20.0%
!!! ATCCTTTTTTGTTTTGTTTT+TGG - chr5_4:47287404-47287423 None:intergenic 20.0%
!! ATTTACAATTAATTAATGGC+AGG + chr5_4:47287763-47287782 Msa0854630:intron 20.0%
!! TGCATAAAATAGATACAAAA+AGG + chr5_4:47288746-47288765 Msa0854630:intron 20.0%
!!! AAATAAGGTTAGGTTTTTTA+AGG - chr5_4:47288875-47288894 None:intergenic 20.0%
!! TTAATTATGGATATTTGGTT+TGG - chr5_4:47289172-47289191 None:intergenic 20.0%
!!! AGTATTTTACGAGTTAATTA+TGG - chr5_4:47289185-47289204 None:intergenic 20.0%
!! TAGTTAGAGATATAAAGATT+AGG + chr5_4:47289211-47289230 Msa0854630:intron 20.0%
!! AATGTATGTTAACTAAATTC+AGG + chr5_4:47289374-47289393 Msa0854630:intron 20.0%
!!! CAATTCAAGTTTCTAATAAT+AGG + chr5_4:47289692-47289711 Msa0854630:intron 20.0%
!!! TGGAGATAATATTTTTCAAT+AGG - chr5_4:47289821-47289840 None:intergenic 20.0%
!! ATTATACATCAATGAGAAAA+TGG + chr5_4:47289918-47289937 Msa0854630:intron 20.0%
!!! ATTTTTGTTGTTTTTGTTTC+AGG + chr5_4:47290504-47290523 Msa0854630:intron 20.0%
!!! TTTTTACCATAAAAAATACC+TGG - chr5_4:47290740-47290759 None:intergenic 20.0%
!! TCATTAGCAATAAAATTGTA+AGG + chr5_4:47290891-47290910 Msa0854630:intron 20.0%
!!! TGAAAATATATCTGGTTTAT+TGG + chr5_4:47291019-47291038 Msa0854630:intron 20.0%
!! TATATATATATAGCGAAAAG+GGG - chr5_4:47291449-47291468 None:intergenic 20.0%
! AACAATTAGGGACATATTTA+AGG + chr5_4:47285628-47285647 Msa0854630:five_prime_UTR 25.0%
! TTCAAAGATTCGTAGAATTA+TGG + chr5_4:47285802-47285821 Msa0854630:five_prime_UTR 25.0%
! ATGACCAAAGATAATGAATT+AGG + chr5_4:47285923-47285942 Msa0854630:five_prime_UTR 25.0%
! ACATTAAAGATGCTCTAATA+AGG - chr5_4:47286241-47286260 None:intergenic 25.0%
!! AAAGTGTAATCAATTTTGTC+AGG + chr5_4:47286537-47286556 Msa0854630:intron 25.0%
!!! AGTAATATTTTTAGAGTTGC+GGG + chr5_4:47286602-47286621 Msa0854630:intron 25.0%
! TAAAATCTAGTCAACAGTTA+AGG + chr5_4:47286805-47286824 Msa0854630:intron 25.0%
! TTCCTTCAAACAAAAAGTTT+AGG + chr5_4:47286838-47286857 Msa0854630:intron 25.0%
! AAACAAATGCTACATATCAT+GGG - chr5_4:47286867-47286886 None:intergenic 25.0%
! AAAACAAATGCTACATATCA+TGG - chr5_4:47286868-47286887 None:intergenic 25.0%
! GTGAACTTCAAATATTTCAA+TGG + chr5_4:47287109-47287128 Msa0854630:intron 25.0%
! AACTAGATTAAGTTTCAACA+TGG + chr5_4:47287133-47287152 Msa0854630:intron 25.0%
! ACTAGATTAAGTTTCAACAT+GGG + chr5_4:47287134-47287153 Msa0854630:intron 25.0%
! TGTTATCAGTAATTAGGAAA+AGG + chr5_4:47287229-47287248 Msa0854630:intron 25.0%
! GATTATTTATGTGATGTATG+TGG - chr5_4:47287262-47287281 None:intergenic 25.0%
! GACCAAAAACAAAACAAAAA+AGG + chr5_4:47287399-47287418 Msa0854630:intron 25.0%
! TTAATTGACCATAAATACCT+CGG - chr5_4:47287924-47287943 None:intergenic 25.0%
! AATTTCGAGATATAAACATG+AGG + chr5_4:47288403-47288422 Msa0854630:intron 25.0%
! TAGAAACTGAAATAAAGTTG+TGG - chr5_4:47288471-47288490 None:intergenic 25.0%
! AAGAATGGTGAAGAAATTAA+AGG - chr5_4:47288512-47288531 None:intergenic 25.0%
!!! TGAAATTTTTTAATGGACCT+TGG + chr5_4:47288539-47288558 Msa0854630:intron 25.0%
!!! TGGGAAGATTAAGAATTTTT+TGG + chr5_4:47288578-47288597 Msa0854630:intron 25.0%
!!! ATGGTTGATAACTAAAAGTA+GGG - chr5_4:47288642-47288661 None:intergenic 25.0%
!! TGTATCTATTTTATGCATCT+TGG - chr5_4:47288743-47288762 None:intergenic 25.0%
!!! ATTCTATGATTTTGGAAGTA+TGG - chr5_4:47288819-47288838 None:intergenic 25.0%
! ATACTTCCAAAATCATAGAA+TGG + chr5_4:47288818-47288837 Msa0854630:intron 25.0%
! ACAGATAAAATCCACATATT+GGG - chr5_4:47288943-47288962 None:intergenic 25.0%
! TACAGATAAAATCCACATAT+TGG - chr5_4:47288944-47288963 None:intergenic 25.0%
! ACGAGTTAATTATGGATATT+TGG - chr5_4:47289177-47289196 None:intergenic 25.0%
! TTAGTTAACATACATTCCTT+TGG - chr5_4:47289370-47289389 None:intergenic 25.0%
! ATAGAATTCTTCGAAGATAT+GGG + chr5_4:47289873-47289892 Msa0854630:intron 25.0%
! AAAAAAATAAGGCTAGAATC+TGG + chr5_4:47290269-47290288 Msa0854630:intron 25.0%
! TAACTTCAAATATGTTTGGA+TGG - chr5_4:47290601-47290620 None:intergenic 25.0%
! ACACTTCTCTCATTATTTAT+TGG - chr5_4:47290775-47290794 None:intergenic 25.0%
! AGAAAGCTTGAAAATATATC+TGG + chr5_4:47291011-47291030 Msa0854630:intron 25.0%
! AAAGCAAACAATTCTATCTA+GGG - chr5_4:47291075-47291094 None:intergenic 25.0%
! TAAAGCAAACAATTCTATCT+AGG - chr5_4:47291076-47291095 None:intergenic 25.0%
TCGTAGAATTATGGATACAT+TGG + chr5_4:47285811-47285830 Msa0854630:five_prime_UTR 30.0%
AGAAAAATCTATATGCTACG+AGG + chr5_4:47285847-47285866 Msa0854630:five_prime_UTR 30.0%
TCATCTCAACTATATATGTG+TGG - chr5_4:47285907-47285926 None:intergenic 30.0%
GGTTCCTAATTCATTATCTT+TGG - chr5_4:47285930-47285949 None:intergenic 30.0%
! TAATGAATTAGGAACCCTTT+TGG + chr5_4:47285934-47285953 Msa0854630:five_prime_UTR 30.0%
! AATGAATTAGGAACCCTTTT+GGG + chr5_4:47285935-47285954 Msa0854630:five_prime_UTR 30.0%
TCACATGAGATCACTTATTA+TGG + chr5_4:47286686-47286705 Msa0854630:intron 30.0%
!! CTTTTTGTTTGAAGGAATCA+TGG - chr5_4:47286835-47286854 None:intergenic 30.0%
!! CACCTAAACTTTTTGTTTGA+AGG - chr5_4:47286843-47286862 None:intergenic 30.0%
CTTCAAACAAAAAGTTTAGG+TGG + chr5_4:47286841-47286860 Msa0854630:intron 30.0%
TTCGTAACAAATACATGGAA+AGG + chr5_4:47287087-47287106 Msa0854630:intron 30.0%
AACATGGGATAAGAAATTAC+CGG + chr5_4:47287149-47287168 Msa0854630:intron 30.0%
CAGTTGTGTTATCAGTAATT+AGG + chr5_4:47287223-47287242 Msa0854630:intron 30.0%
CACATAAATAATCATGCACA+AGG + chr5_4:47287269-47287288 Msa0854630:intron 30.0%
AATATTTGAACTTTGCCGTA+AGG - chr5_4:47287332-47287351 None:intergenic 30.0%
TCAAATATTAAGTCTCGTGT+TGG + chr5_4:47287343-47287362 Msa0854630:intron 30.0%
TGGTAACAAATCATGCAATT+TGG - chr5_4:47287430-47287449 None:intergenic 30.0%
!! TGATAGTGAGCAATTTTGTA+TGG + chr5_4:47287520-47287539 Msa0854630:intron 30.0%
! GATAGTGAGCAATTTTGTAT+GGG + chr5_4:47287521-47287540 Msa0854630:intron 30.0%
! AGAGAAGACTAGGTTTTTAT+TGG - chr5_4:47287602-47287621 None:intergenic 30.0%
TTATCTGGAAAGAATATGGA+AGG + chr5_4:47287877-47287896 Msa0854630:CDS 30.0%
TAATTGACCATAAATACCTC+GGG - chr5_4:47287923-47287942 None:intergenic 30.0%
ATGAGTGTTTAGTGTAAAAC+TGG - chr5_4:47288019-47288038 None:intergenic 30.0%
TGAATGAAGTTAGCAAACAA+GGG - chr5_4:47288044-47288063 None:intergenic 30.0%
TTGAATGAAGTTAGCAAACA+AGG - chr5_4:47288045-47288064 None:intergenic 30.0%
!! CTCTAGTTATTTTCACTACA+AGG - chr5_4:47288193-47288212 None:intergenic 30.0%
CTTGTAGTGAAAATAACTAG+AGG + chr5_4:47288191-47288210 Msa0854630:intron 30.0%
TGGATCCTTTAACACTTTAT+GGG - chr5_4:47288431-47288450 None:intergenic 30.0%
ATGGATCCTTTAACACTTTA+TGG - chr5_4:47288432-47288451 None:intergenic 30.0%
! GAAATTAAAGGCTTTGTCTT+CGG - chr5_4:47288500-47288519 None:intergenic 30.0%
! AAAACTGGTTTATCATTCCA+AGG - chr5_4:47288559-47288578 None:intergenic 30.0%
! TTGGAATGATAAACCAGTTT+TGG + chr5_4:47288558-47288577 Msa0854630:intron 30.0%
! TGGAATGATAAACCAGTTTT+GGG + chr5_4:47288559-47288578 Msa0854630:intron 30.0%
ATTCTTAATCTTCCCAAAAC+TGG - chr5_4:47288574-47288593 None:intergenic 30.0%
!! TGGTTGATAACTAAAAGTAG+GGG - chr5_4:47288641-47288660 None:intergenic 30.0%
!! GATGGTTGATAACTAAAAGT+AGG - chr5_4:47288643-47288662 None:intergenic 30.0%
GTGTTAGATCAAGAGATAAA+TGG + chr5_4:47288681-47288700 Msa0854630:intron 30.0%
!! ATTTTGGAAGTATGGTTAGT+CGG - chr5_4:47288811-47288830 None:intergenic 30.0%
!!! TTTTAAGGCTGTACTTAATC+AGG - chr5_4:47288860-47288879 None:intergenic 30.0%
! TATGTGGATTTTATCTGTAG+AGG + chr5_4:47288945-47288964 Msa0854630:intron 30.0%
! ATGTGGATTTTATCTGTAGA+GGG + chr5_4:47288946-47288965 Msa0854630:intron 30.0%
AAACAACGGAACAATAACTT+AGG + chr5_4:47289323-47289342 Msa0854630:intron 30.0%
AAGACAGATCAATAAGATAG+CGG + chr5_4:47289469-47289488 Msa0854630:intron 30.0%
CTACTTCACAAATTAGATTG+AGG + chr5_4:47289722-47289741 Msa0854630:intron 30.0%
! GATGAATTGATTCTTGTGTT+TGG - chr5_4:47289841-47289860 None:intergenic 30.0%
GAATCAATTCATCATCTTCT+TGG + chr5_4:47289848-47289867 Msa0854630:intron 30.0%
GATAGAATTCTTCGAAGATA+TGG + chr5_4:47289872-47289891 Msa0854630:intron 30.0%
TGTTTGCAGTATAACTTTGT+CGG - chr5_4:47289958-47289977 None:intergenic 30.0%
ACAAAGTTATACTGCAAACA+GGG + chr5_4:47289958-47289977 Msa0854630:intron 30.0%
CTAGACATTTCATATTAGTG+TGG + chr5_4:47289987-47290006 Msa0854630:intron 30.0%
CAAAAGTGACCATATATAGA+CGG + chr5_4:47290138-47290157 Msa0854630:intron 30.0%
ACTTAAACACTAAAACCACT+CGG + chr5_4:47290164-47290183 Msa0854630:intron 30.0%
! TTTTGTACGCATATACATTC+CGG - chr5_4:47290198-47290217 None:intergenic 30.0%
ATATGCATAAACATAAGGCA+CGG - chr5_4:47290240-47290259 None:intergenic 30.0%
! ATCCATTGATGGTATTGTTA+AGG - chr5_4:47290654-47290673 None:intergenic 30.0%
GAATATAAAGTTGACGAAGT+AGG - chr5_4:47290695-47290714 None:intergenic 30.0%
ACTTCGTCAACTTTATATTC+TGG + chr5_4:47290695-47290714 Msa0854630:CDS 30.0%
CTTCGTCAACTTTATATTCT+GGG + chr5_4:47290696-47290715 Msa0854630:CDS 30.0%
GTTTATATACTCCCAAACAA+AGG + chr5_4:47290920-47290939 Msa0854630:intron 30.0%
TTATTGGATCCAATTCAAAG+TGG + chr5_4:47291035-47291054 Msa0854630:intron 30.0%
ACAATTCTATCTAGGGAATT+TGG - chr5_4:47291068-47291087 None:intergenic 30.0%
AGAATTGTTTGCTTTATGAG+TGG + chr5_4:47291080-47291099 Msa0854630:intron 30.0%
CCAAGAAAAAGGAAACTTAT+TGG - chr5_4:47291131-47291150 None:intergenic 30.0%
! CCAATAAGTTTCCTTTTTCT+TGG + chr5_4:47291128-47291147 Msa0854630:intron 30.0%
AACAAAAGGTAAACAGAGAA+AGG - chr5_4:47291361-47291380 None:intergenic 30.0%
! TTTCTCTGTTTACCTTTTGT+TGG + chr5_4:47291360-47291379 Msa0854630:intron 30.0%
CAGATACAAAAGAAATGGAA+AGG - chr5_4:47291393-47291412 None:intergenic 30.0%
GTTGTCAGATACAAAAGAAA+TGG - chr5_4:47291398-47291417 None:intergenic 30.0%
TTACAGTAATTGAATTCCAC+AGG + chr5_4:47291505-47291524 Msa0854630:intron 30.0%
TAGGGACATATTTAAGGAGT+TGG + chr5_4:47285634-47285653 Msa0854630:five_prime_UTR 35.0%
! AAGGAGTTGGAGTATTTGAT+TGG + chr5_4:47285647-47285666 Msa0854630:five_prime_UTR 35.0%
TCATCACATGTTGGGTAATT+GGG - chr5_4:47285715-47285734 None:intergenic 35.0%
TTCATCACATGTTGGGTAAT+TGG - chr5_4:47285716-47285735 None:intergenic 35.0%
! ACGAATCTTTGAAGAAAGTG+AGG - chr5_4:47285795-47285814 None:intergenic 35.0%
! ATGAATTAGGAACCCTTTTG+GGG + chr5_4:47285936-47285955 Msa0854630:five_prime_UTR 35.0%
! AAACTTTCTCAGCGAGTTTT+TGG - chr5_4:47285973-47285992 None:intergenic 35.0%
AAAAACTCGCTGAGAAAGTT+TGG + chr5_4:47285972-47285991 Msa0854630:CDS 35.0%
AAAACTCGCTGAGAAAGTTT+GGG + chr5_4:47285973-47285992 Msa0854630:CDS 35.0%
GAAAAAATCTAGCACTAGAG+TGG - chr5_4:47286042-47286061 None:intergenic 35.0%
!!! CTCTAGTGCTAGATTTTTTC+CGG + chr5_4:47286042-47286061 Msa0854630:CDS 35.0%
! TTTTTCCGGTCAAGAAATGA+TGG + chr5_4:47286056-47286075 Msa0854630:CDS 35.0%
!! AAGTTTTGATACCTTTCTCC+TGG - chr5_4:47286146-47286165 None:intergenic 35.0%
TGCATATTACTTACTCTCGT+TGG + chr5_4:47286287-47286306 Msa0854630:intron 35.0%
!!! ATATTTTTAGAGTTGCGGGT+TGG + chr5_4:47286606-47286625 Msa0854630:intron 35.0%
TTTGAGTGAAGGAATCATGT+AGG - chr5_4:47286914-47286933 None:intergenic 35.0%
!! AAGTGAGCAATTTTGAGTGA+AGG - chr5_4:47286925-47286944 None:intergenic 35.0%
AACTCACGTTGAGAATATTG+TGG - chr5_4:47286961-47286980 None:intergenic 35.0%
AACGTGAGTTATCTCACATT+CGG + chr5_4:47286971-47286990 Msa0854630:intron 35.0%
CAACATGAGTTAACTCATGT+TGG - chr5_4:47287000-47287019 None:intergenic 35.0%
CAACATGAGTTAACTCATGT+TGG + chr5_4:47287000-47287019 Msa0854630:intron 35.0%
AGTTAACTCACGTAGGTTAT+AGG - chr5_4:47287026-47287045 None:intergenic 35.0%
AGAAGATATGACTTTCTGTC+CGG - chr5_4:47287171-47287190 None:intergenic 35.0%
!! CTGCTACTTTGTATTTCCAT+TGG - chr5_4:47287301-47287320 None:intergenic 35.0%
GTGAGTTAACTCAAGGTTAT+AGG + chr5_4:47287452-47287471 Msa0854630:intron 35.0%
TAATGGCAGGAGAAAGAAAT+TGG + chr5_4:47287776-47287795 Msa0854630:intron 35.0%
TTTGTATGTGTTCCCAAACT+GGG - chr5_4:47287838-47287857 None:intergenic 35.0%
! TTTTGTATGTGTTCCCAAAC+TGG - chr5_4:47287839-47287858 None:intergenic 35.0%
GGGTTTATCTGGAAAGAATA+TGG + chr5_4:47287873-47287892 Msa0854630:CDS 35.0%
AGTGTTTAGTGTAAAACTGG+AGG - chr5_4:47288016-47288035 None:intergenic 35.0%
AGAGGTCTATATAGATGACA+TGG + chr5_4:47288209-47288228 Msa0854630:intron 35.0%
GATAGTTCAAAATGCTCCTT+TGG + chr5_4:47288315-47288334 Msa0854630:intron 35.0%
!!! AGCTAAGGAATTTTCTAGCT+TGG - chr5_4:47288344-47288363 None:intergenic 35.0%
TGGTTCTTCTCATTAGATGA+TGG - chr5_4:47288451-47288470 None:intergenic 35.0%
!! ATTTGGCCTTATTAGAACGT+AGG - chr5_4:47288609-47288628 None:intergenic 35.0%
GTTCTAATAAGGCCAAATCA+AGG + chr5_4:47288611-47288630 Msa0854630:intron 35.0%
! CATCGATTATTTCCTTTGCA+CGG + chr5_4:47288659-47288678 Msa0854630:intron 35.0%
! CACGAAATTGCGTAGTTTTT+CGG - chr5_4:47288709-47288728 None:intergenic 35.0%
CTTCCAAAATCATAGAATGG+TGG + chr5_4:47288821-47288840 Msa0854630:intron 35.0%
! TGACCACCATTCTATGATTT+TGG - chr5_4:47288827-47288846 None:intergenic 35.0%
TTGAATTGATCTACGTTCCA+AGG + chr5_4:47289244-47289263 Msa0854630:intron 35.0%
TGAATTGATCTACGTTCCAA+GGG + chr5_4:47289245-47289264 Msa0854630:intron 35.0%
TCTCTTGGTATTGTAAAGCT+TGG - chr5_4:47289298-47289317 None:intergenic 35.0%
!!! TTTGGTGCTTGGTTTTAGAA+GGG - chr5_4:47289352-47289371 None:intergenic 35.0%
! AAATTCAGGAGAGTGTAGAT+TGG + chr5_4:47289388-47289407 Msa0854630:intron 35.0%
TCTTCTTCTAATACTGAACG+AGG - chr5_4:47289422-47289441 None:intergenic 35.0%
TAGGGAAAACTGCATAAAAG+AGG + chr5_4:47289514-47289533 Msa0854630:intron 35.0%
TAGGTAAACGAAGTAATGTG+TGG + chr5_4:47289560-47289579 Msa0854630:intron 35.0%
TACTTCGAGCAAGTTTCTAT+TGG + chr5_4:47289618-47289637 Msa0854630:intron 35.0%
ACTCTGTCTAGTAATAGAGT+GGG - chr5_4:47289644-47289663 None:intergenic 35.0%
ACTCTATTACTAGACAGAGT+GGG + chr5_4:47289644-47289663 Msa0854630:intron 35.0%
GACAAAGTTATACTGCAAAC+AGG + chr5_4:47289957-47289976 Msa0854630:intron 35.0%
CAAAGTTATACTGCAAACAG+GGG + chr5_4:47289959-47289978 Msa0854630:intron 35.0%
TTAAGTGTGCCGTCTATATA+TGG - chr5_4:47290150-47290169 None:intergenic 35.0%
TATGCATAAACATAAGGCAC+GGG - chr5_4:47290239-47290258 None:intergenic 35.0%
TTTGTTTCAGGAGTTACTAC+AGG + chr5_4:47290516-47290535 Msa0854630:intron 35.0%
GACACGCATATAATTTCATG+TGG - chr5_4:47290547-47290566 None:intergenic 35.0%
AAGTTGTTGTACTTTCTTCC+TGG - chr5_4:47290573-47290592 None:intergenic 35.0%
! AGGAAGAAAGTACAACAACT+TGG + chr5_4:47290572-47290591 Msa0854630:CDS 35.0%
ATGGTATTGTTAAGGACATG+CGG - chr5_4:47290646-47290665 None:intergenic 35.0%
GTCCTTAACAATACCATCAA+TGG + chr5_4:47290649-47290668 Msa0854630:CDS 35.0%
GTTTGAGTAACATCCATTGA+TGG - chr5_4:47290665-47290684 None:intergenic 35.0%
! ATATTCTGGGTGGATTTCAT+CGG + chr5_4:47290709-47290728 Msa0854630:CDS 35.0%
!!! GGCATACCAGGTATTTTTTA+TGG + chr5_4:47290731-47290750 Msa0854630:intron 35.0%
!!! GTTTGGGCTAGGTTTTATTT+TGG + chr5_4:47290961-47290980 Msa0854630:intron 35.0%
TTGTTTGCTTTATGAGTGGA+AGG + chr5_4:47291084-47291103 Msa0854630:intron 35.0%
! TTCCTTTTTCTTGGAAGAGA+TGG + chr5_4:47291137-47291156 Msa0854630:intron 35.0%
AACCATCTCTTCCAAGAAAA+AGG - chr5_4:47291142-47291161 None:intergenic 35.0%
TGATCTATGCTTTCAGAGTT+TGG + chr5_4:47291163-47291182 Msa0854630:intron 35.0%
! GTTTGAGAGTCTTTTGTGAT+GGG + chr5_4:47291257-47291276 Msa0854630:intron 35.0%
! TTTGAGAGTCTTTTGTGATG+GGG + chr5_4:47291258-47291277 Msa0854630:intron 35.0%
!! ACTTGCTGTTGTAAATTCTC+TGG + chr5_4:47291416-47291435 Msa0854630:intron 35.0%
!! CTTGCTGTTGTAAATTCTCT+GGG + chr5_4:47291417-47291436 Msa0854630:intron 35.0%
! AGAGTTTATGGATTTTCCTG+TGG - chr5_4:47291524-47291543 None:intergenic 35.0%
! CTGACAAAGGCGACAAATTT+TGG + chr5_4:47285677-47285696 Msa0854630:five_prime_UTR 40.0%
! ACAAAGGCGACAAATTTTGG+TGG + chr5_4:47285680-47285699 Msa0854630:five_prime_UTR 40.0%
GAGGTAGTTCATCACATGTT+GGG - chr5_4:47285723-47285742 None:intergenic 40.0%
! GACTTGCTCTAATGTTTGCT+GGG - chr5_4:47285762-47285781 None:intergenic 40.0%
! AGACTTGCTCTAATGTTTGC+TGG - chr5_4:47285763-47285782 None:intergenic 40.0%
GGATACATTGGAGAGCAATT+TGG + chr5_4:47285823-47285842 Msa0854630:five_prime_UTR 40.0%
! TGAATTAGGAACCCTTTTGG+GGG + chr5_4:47285937-47285956 Msa0854630:five_prime_UTR 40.0%
AAAATCTAGCACTAGAGTGG+TGG - chr5_4:47286039-47286058 None:intergenic 40.0%
! GAAGGATCAAAGGTGTATCA+AGG + chr5_4:47286083-47286102 Msa0854630:CDS 40.0%
CAACATGAGTTAACTCACGT+AGG - chr5_4:47287033-47287052 None:intergenic 40.0%
! ATGTATTTGTTACGAACGCG+AGG - chr5_4:47287083-47287102 None:intergenic 40.0%
TCGCGTTCGTAACAAATACA+TGG + chr5_4:47287082-47287101 Msa0854630:intron 40.0%
ATGCACAAGGATCAATCCAA+TGG + chr5_4:47287282-47287301 Msa0854630:intron 40.0%
GTAGCAGCTTTACAACCTTA+CGG + chr5_4:47287314-47287333 Msa0854630:intron 40.0%
TACCAACGTGAGTTAACTCA+AGG + chr5_4:47287445-47287464 Msa0854630:intron 40.0%
AACCTTGAGTTAACTCACGT+TGG - chr5_4:47287450-47287469 None:intergenic 40.0%
!!! AACTCAAGCTGAGGGTATTT+TGG + chr5_4:47287487-47287506 Msa0854630:intron 40.0%
GGAAAATGCAAGAGAAGACT+AGG - chr5_4:47287612-47287631 None:intergenic 40.0%
!! AAGGTAATGGAGGAACTGAA+GGG - chr5_4:47287637-47287656 None:intergenic 40.0%
!! AAAGGTAATGGAGGAACTGA+AGG - chr5_4:47287638-47287657 None:intergenic 40.0%
TTCAGTTCCTCCATTACCTT+TGG + chr5_4:47287637-47287656 Msa0854630:intron 40.0%
! TGCATAACCAAAGGTAATGG+AGG - chr5_4:47287647-47287666 None:intergenic 40.0%
CACTGCATAACCAAAGGTAA+TGG - chr5_4:47287650-47287669 None:intergenic 40.0%
AATGTGCACTGCATAACCAA+AGG - chr5_4:47287656-47287675 None:intergenic 40.0%
TTGTATGTGTTCCCAAACTG+GGG - chr5_4:47287837-47287856 None:intergenic 40.0%
GAACACATACAAAATGCCAC+CGG + chr5_4:47287845-47287864 Msa0854630:CDS 40.0%
TATGGAAGGAAAGAGATACC+TGG + chr5_4:47287891-47287910 Msa0854630:CDS 40.0%
GTTTAGTGTAAAACTGGAGG+AGG - chr5_4:47288013-47288032 None:intergenic 40.0%
TTCATTCAACCATCTCGAGA+GGG + chr5_4:47288056-47288075 Msa0854630:intron 40.0%
AACTTGGCAAGCATGATCTT+CGG + chr5_4:47288138-47288157 Msa0854630:intron 40.0%
! ATCTTCGGGAAATTAGCTTG+AGG + chr5_4:47288153-47288172 Msa0854630:intron 40.0%
GGTCTATATAGATGACATGG+TGG + chr5_4:47288212-47288231 Msa0854630:intron 40.0%
AAGATTTCTTGTAGGTCTCG+GGG - chr5_4:47288264-47288283 None:intergenic 40.0%
CAAGATTTCTTGTAGGTCTC+GGG - chr5_4:47288265-47288284 None:intergenic 40.0%
CCAAGATTTCTTGTAGGTCT+CGG - chr5_4:47288266-47288285 None:intergenic 40.0%
CGAGACCTACAAGAAATCTT+GGG + chr5_4:47288264-47288283 Msa0854630:intron 40.0%
!!! TTTTCTAGCTTGGACTCCAA+AGG - chr5_4:47288334-47288353 None:intergenic 40.0%
TATTCGTGAGCATCAAGCTA+AGG - chr5_4:47288359-47288378 None:intergenic 40.0%
! TTAGCTTGATGCTCACGAAT+AGG + chr5_4:47288358-47288377 Msa0854630:intron 40.0%
! AGGAGCCCATAAAGTGTTAA+AGG + chr5_4:47288423-47288442 Msa0854630:intron 40.0%
GCTACTCCTACGTTCTAATA+AGG + chr5_4:47288600-47288619 Msa0854630:intron 40.0%
AGTAGGGGATTACCTTGATT+TGG - chr5_4:47288626-47288645 None:intergenic 40.0%
CGTGCAAAGGAAATAATCGA+TGG - chr5_4:47288661-47288680 None:intergenic 40.0%
TTGGGTTCAACAAGGGTTAT+TGG - chr5_4:47288925-47288944 None:intergenic 40.0%
CCACATATTGGGTTCAACAA+GGG - chr5_4:47288932-47288951 None:intergenic 40.0%
TCCACATATTGGGTTCAACA+AGG - chr5_4:47288933-47288952 None:intergenic 40.0%
TTGAGTAGTACCAGAAGAAC+TGG + chr5_4:47288996-47289015 Msa0854630:intron 40.0%
CTTTACAATACCAAGAGACC+TGG + chr5_4:47289300-47289319 Msa0854630:intron 40.0%
! GTTATTGTTCCGTTGTTTCC+AGG - chr5_4:47289321-47289340 None:intergenic 40.0%
!!! CTTTGGTGCTTGGTTTTAGA+AGG - chr5_4:47289353-47289372 None:intergenic 40.0%
!! CTTCTAAAACCAAGCACCAA+AGG + chr5_4:47289351-47289370 Msa0854630:intron 40.0%
!! ACATACATTCCTTTGGTGCT+TGG - chr5_4:47289363-47289382 None:intergenic 40.0%
GGAAAACTGCATAAAAGAGG+AGG + chr5_4:47289517-47289536 Msa0854630:intron 40.0%
AGCAAAGAGAGTAACGTAGT+AGG + chr5_4:47289541-47289560 Msa0854630:intron 40.0%
CACTCTGTCTAGTAATAGAG+TGG - chr5_4:47289645-47289664 None:intergenic 40.0%
CACTCTATTACTAGACAGAG+TGG + chr5_4:47289643-47289662 Msa0854630:intron 40.0%
TATTCCCATGCATGAGCAAT+GGG + chr5_4:47289668-47289687 Msa0854630:intron 40.0%
GCAAATATTCATCGTCGAGA+GGG + chr5_4:47290072-47290091 Msa0854630:intron 40.0%
AATAAGGCTAGAATCTGGTG+TGG + chr5_4:47290274-47290293 Msa0854630:intron 40.0%
ATGTAGAGTGAAACATGGTG+TGG - chr5_4:47290306-47290325 None:intergenic 40.0%
ATGATCAGACCATAACACAC+TGG - chr5_4:47290370-47290389 None:intergenic 40.0%
! TTTGCTTCAGTCGATTTCAG+AGG - chr5_4:47290467-47290486 None:intergenic 40.0%
TAAAGTTGACGAAGTAGGCA+TGG - chr5_4:47290690-47290709 None:intergenic 40.0%
CGTCAACTTTATATTCTGGG+TGG + chr5_4:47290699-47290718 Msa0854630:CDS 40.0%
! TATTCTGGGTGGATTTCATC+GGG + chr5_4:47290710-47290729 Msa0854630:CDS 40.0%
ATACTCCCAAACAAAGGCTT+AGG + chr5_4:47290926-47290945 Msa0854630:intron 40.0%
TACTCCCAAACAAAGGCTTA+GGG + chr5_4:47290927-47290946 Msa0854630:intron 40.0%
AGATAGACCACATAGTTGCA+TGG - chr5_4:47290991-47291010 None:intergenic 40.0%
GGCAAAGAACCACTTTGAAT+TGG - chr5_4:47291047-47291066 None:intergenic 40.0%
AGGTGAGGCTAATTCTCTAT+TGG + chr5_4:47291104-47291123 Msa0854630:intron 40.0%
TCTATGCTTTCAGAGTTTGG+AGG + chr5_4:47291166-47291185 Msa0854630:intron 40.0%
CTATGCTTTCAGAGTTTGGA+GGG + chr5_4:47291167-47291186 Msa0854630:intron 40.0%
CCACTACCAAGTAAACAACA+GGG - chr5_4:47291235-47291254 None:intergenic 40.0%
ACCACTACCAAGTAAACAAC+AGG - chr5_4:47291236-47291255 None:intergenic 40.0%
!! TGTTGTTTACTTGGTAGTGG+TGG + chr5_4:47291235-47291254 Msa0854630:intron 40.0%
! GGTTTGAGAGTCTTTTGTGA+TGG + chr5_4:47291256-47291275 Msa0854630:intron 40.0%
!! GTTTACCTTTTGTTGGCTGT+AGG + chr5_4:47291367-47291386 Msa0854630:intron 40.0%
ATCCATAAACTCTATGCCAG+AGG + chr5_4:47291531-47291550 Msa0854630:CDS 40.0%
! GATTGGTCGAGATCTGACAA+AGG + chr5_4:47285664-47285683 Msa0854630:five_prime_UTR 45.0%
!! AAGGCGACAAATTTTGGTGG+CGG + chr5_4:47285683-47285702 Msa0854630:five_prime_UTR 45.0%
GGAGGTAGTTCATCACATGT+TGG - chr5_4:47285724-47285743 None:intergenic 45.0%
TGCTACGAGGACTCTTCTTT+AGG + chr5_4:47285860-47285879 Msa0854630:five_prime_UTR 45.0%
TTCCGGTCAAGAAATGATGG+CGG + chr5_4:47286059-47286078 Msa0854630:CDS 45.0%
ACGTGAGTTAACTCAAGCTG+AGG + chr5_4:47287478-47287497 Msa0854630:intron 45.0%
CGTGAGTTAACTCAAGCTGA+GGG + chr5_4:47287479-47287498 Msa0854630:intron 45.0%
!! AGGTAATGGAGGAACTGAAG+GGG - chr5_4:47287636-47287655 None:intergenic 45.0%
TACAAAATGCCACCGGAAGA+CGG + chr5_4:47287852-47287871 Msa0854630:CDS 45.0%
TTCCAGATAAACCCGTCTTC+CGG - chr5_4:47287867-47287886 None:intergenic 45.0%
! GCTTCAACCCGAGGTATTTA+TGG + chr5_4:47287913-47287932 Msa0854630:intron 45.0%
CTTCATTCAACCATCTCGAG+AGG + chr5_4:47288055-47288074 Msa0854630:intron 45.0%
TCTTGATTTCCCTCTCGAGA+TGG - chr5_4:47288068-47288087 None:intergenic 45.0%
ATCTCGAGAGGGAAATCAAG+AGG + chr5_4:47288067-47288086 Msa0854630:intron 45.0%
GAAGATCATGCTTGCCAAGT+TGG - chr5_4:47288139-47288158 None:intergenic 45.0%
ACTTGGCAAGCATGATCTTC+GGG + chr5_4:47288139-47288158 Msa0854630:intron 45.0%
! TCGGGAAATTAGCTTGAGGT+AGG + chr5_4:47288157-47288176 Msa0854630:intron 45.0%
! AATTAGCTTGAGGTAGGACG+TGG + chr5_4:47288163-47288182 Msa0854630:intron 45.0%
TGGTGAAGACCGATGAAGTA+TGG + chr5_4:47288232-47288251 Msa0854630:intron 45.0%
! GGGTTGACTCCATACTTCAT+CGG - chr5_4:47288244-47288263 None:intergenic 45.0%
CCGAGACCTACAAGAAATCT+TGG + chr5_4:47288263-47288282 Msa0854630:intron 45.0%
CGGAACCCAAGATTTCTTGT+AGG - chr5_4:47288272-47288291 None:intergenic 45.0%
CTTGATCTAACACCGTGCAA+AGG - chr5_4:47288674-47288693 None:intergenic 45.0%
GAGCTTAGTCGTAGTAACGA+CGG - chr5_4:47288789-47288808 None:intergenic 45.0%
CCCTTGTTGAACCCAATATG+TGG + chr5_4:47288929-47288948 Msa0854630:intron 45.0%
GAAACTTCGTCCAGTTCTTC+TGG - chr5_4:47289009-47289028 None:intergenic 45.0%
TCCAAGGGAACTAAACTGCA+AGG + chr5_4:47289260-47289279 Msa0854630:intron 45.0%
ACCAAGAGACCTGGAAACAA+CGG + chr5_4:47289309-47289328 Msa0854630:intron 45.0%
GTAATGTGTGGTAGTCACGT+TGG + chr5_4:47289572-47289591 Msa0854630:intron 45.0%
! TCACGTTGGTGGAAGATCTT+TGG + chr5_4:47289586-47289605 Msa0854630:intron 45.0%
CTATTCCCATGCATGAGCAA+TGG + chr5_4:47289667-47289686 Msa0854630:intron 45.0%
TTGACCCATTGCTCATGCAT+GGG - chr5_4:47289675-47289694 None:intergenic 45.0%
ATTGACCCATTGCTCATGCA+TGG - chr5_4:47289676-47289695 None:intergenic 45.0%
TTAGATTGAGGTAGAGCCAG+TGG + chr5_4:47289734-47289753 Msa0854630:intron 45.0%
AGTTATACTGCAAACAGGGG+CGG + chr5_4:47289962-47289981 Msa0854630:intron 45.0%
GGCAAATATTCATCGTCGAG+AGG + chr5_4:47290071-47290090 Msa0854630:intron 45.0%
AGGCACGGGAAGGAATAATA+TGG - chr5_4:47290225-47290244 None:intergenic 45.0%
CATAAACATAAGGCACGGGA+AGG - chr5_4:47290235-47290254 None:intergenic 45.0%
! GTTACATTTTGCAGCATGGG+CGG - chr5_4:47290329-47290348 None:intergenic 45.0%
! CCGGTTACATTTTGCAGCAT+GGG - chr5_4:47290332-47290351 None:intergenic 45.0%
CCCATGCTGCAAAATGTAAC+CGG + chr5_4:47290329-47290348 Msa0854630:intron 45.0%
CCATGCTGCAAAATGTAACC+GGG + chr5_4:47290330-47290349 Msa0854630:intron 45.0%
TGCAAAATGTAACCGGGAAG+AGG + chr5_4:47290336-47290355 Msa0854630:intron 45.0%
ATCAGACCATAACACACTGG+CGG - chr5_4:47290367-47290386 None:intergenic 45.0%
AATTATATGCGTGTCGAGCC+AGG + chr5_4:47290552-47290571 Msa0854630:CDS 45.0%
TATTGTTAAGGACATGCGGC+AGG - chr5_4:47290642-47290661 None:intergenic 45.0%
ACTCCCAAACAAAGGCTTAG+GGG + chr5_4:47290928-47290947 Msa0854630:intron 45.0%
! GAACCCCTAAGCCTTTGTTT+GGG - chr5_4:47290934-47290953 None:intergenic 45.0%
CAAACAAAGGCTTAGGGGTT+CGG + chr5_4:47290933-47290952 Msa0854630:intron 45.0%
TTAGGGGTTCGGAGATAGTT+TGG + chr5_4:47290944-47290963 Msa0854630:intron 45.0%
TAGGGGTTCGGAGATAGTTT+GGG + chr5_4:47290945-47290964 Msa0854630:intron 45.0%
! TGGTTTGCCATGCAACTATG+TGG + chr5_4:47290981-47291000 Msa0854630:intron 45.0%
TGCTTTATGAGTGGAAGGTG+AGG + chr5_4:47291089-47291108 Msa0854630:intron 45.0%
ACCACCAACTAGAAAGACCT+CGG - chr5_4:47291204-47291223 None:intergenic 45.0%
! CCCTGTTGTTTACTTGGTAG+TGG + chr5_4:47291232-47291251 Msa0854630:intron 45.0%
AACACAAACCCACACAAGGT+TGG - chr5_4:47291284-47291303 None:intergenic 45.0%
AACCTTGTGTGGGTTTGTGT+TGG + chr5_4:47291283-47291302 Msa0854630:intron 45.0%
ACCTTGTGTGGGTTTGTGTT+GGG + chr5_4:47291284-47291303 Msa0854630:intron 45.0%
AAACAACACTGCAACCTGAG+AGG - chr5_4:47291334-47291353 None:intergenic 45.0%
AAAGGCCTACAGCCAACAAA+AGG - chr5_4:47291375-47291394 None:intergenic 45.0%
!!! TAATATATAACATTTTTTTA+CGG + chr5_4:47290050-47290069 Msa0854630:intron 5.0%
CATGTGATGAACTACCTCCG+TGG + chr5_4:47285725-47285744 Msa0854630:five_prime_UTR 50.0%
!! GAACCCTTTTGGGGGATGAT+TGG + chr5_4:47285945-47285964 Msa0854630:exon 50.0%
GAGCCAATCATCCCCCAAAA+GGG - chr5_4:47285951-47285970 None:intergenic 50.0%
TCCGGTCAAGAAATGATGGC+GGG + chr5_4:47286060-47286079 Msa0854630:CDS 50.0%
!! TCAAGAAATGATGGCGGGGA+AGG + chr5_4:47286065-47286084 Msa0854630:CDS 50.0%
TACCTTTCTCCTGGTTGCGA+GGG - chr5_4:47286137-47286156 None:intergenic 50.0%
ATACCTTTCTCCTGGTTGCG+AGG - chr5_4:47286138-47286157 None:intergenic 50.0%
! TGTTACGAACGCGAGGTGTT+CGG - chr5_4:47287076-47287095 None:intergenic 50.0%
TAATGGAGGAACTGAAGGGG+AGG - chr5_4:47287633-47287652 None:intergenic 50.0%
TGTGTTCCCAAACTGGGGTT+CGG - chr5_4:47287832-47287851 None:intergenic 50.0%
ACAAAATGCCACCGGAAGAC+GGG + chr5_4:47287853-47287872 Msa0854630:CDS 50.0%
!! AAATACCTCGGGTTGAAGCC+AGG - chr5_4:47287912-47287931 None:intergenic 50.0%
TGCTATTCTCACAGCTCGAG+AGG + chr5_4:47288101-47288120 Msa0854630:intron 50.0%
GCTATTCTCACAGCTCGAGA+GGG + chr5_4:47288102-47288121 Msa0854630:intron 50.0%
GGGAAACATGTCGACCAACT+TGG + chr5_4:47288122-47288141 Msa0854630:intron 50.0%
! GCCTTGCAGTTTAGTTCCCT+TGG - chr5_4:47289264-47289283 None:intergenic 50.0%
! TCCGTTGTTTCCAGGTCTCT+TGG - chr5_4:47289313-47289332 None:intergenic 50.0%
ATGTGTGGTAGTCACGTTGG+TGG + chr5_4:47289575-47289594 Msa0854630:intron 50.0%
TCTTCCATGATGGTAGCCAC+TGG - chr5_4:47289753-47289772 None:intergenic 50.0%
GCGTAGTTGCTCTTCCATGA+TGG - chr5_4:47289763-47289782 None:intergenic 50.0%
CATGGAAGAGCAACTACGCA+TGG + chr5_4:47289764-47289783 Msa0854630:intron 50.0%
TAAGACACACCCACAACTCG+CGG + chr5_4:47290097-47290116 Msa0854630:intron 50.0%
!!! CCTTTTTTCCCGCGAGTTGT+GGG - chr5_4:47290109-47290128 None:intergenic 50.0%
AAACCACTCGGTCATGATGC+CGG + chr5_4:47290176-47290195 Msa0854630:intron 50.0%
GGCGGATGTAGAGTGAAACA+TGG - chr5_4:47290311-47290330 None:intergenic 50.0%
! CCCGGTTACATTTTGCAGCA+TGG - chr5_4:47290333-47290352 None:intergenic 50.0%
TCAGACCATAACACACTGGC+GGG - chr5_4:47290366-47290385 None:intergenic 50.0%
AGTTGACGAAGTAGGCATGG+TGG - chr5_4:47290687-47290706 None:intergenic 50.0%
TGGATTTCATCGGGCATACC+AGG + chr5_4:47290719-47290738 Msa0854630:CDS 50.0%
CGAACCCCTAAGCCTTTGTT+TGG - chr5_4:47290935-47290954 None:intergenic 50.0%
GTTCGGAGATAGTTTGGGCT+AGG + chr5_4:47290950-47290969 Msa0854630:intron 50.0%
! TCAGAGTTTGGAGGGTGCAT+AGG + chr5_4:47291175-47291194 Msa0854630:intron 50.0%
! GCTTCCGAGGTCTTTCTAGT+TGG + chr5_4:47291197-47291216 Msa0854630:intron 50.0%
!! TCCGAGGTCTTTCTAGTTGG+TGG + chr5_4:47291200-47291219 Msa0854630:intron 50.0%
! TCCTCGCCCTGTTGTTTACT+TGG + chr5_4:47291226-47291245 Msa0854630:intron 50.0%
ACCAAGTAAACAACAGGGCG+AGG - chr5_4:47291230-47291249 None:intergenic 50.0%
ACCCAACACAAACCCACACA+AGG - chr5_4:47291288-47291307 None:intergenic 50.0%
TTGTGTGGGTTTGTGTTGGG+TGG + chr5_4:47291287-47291306 Msa0854630:intron 50.0%
TGTGTGGGTTTGTGTTGGGT+GGG + chr5_4:47291288-47291307 Msa0854630:intron 50.0%
GGCCTCTGGCATAGAGTTTA+TGG - chr5_4:47291536-47291555 None:intergenic 50.0%
GCTGGGATCAGCAAACTCCA+CGG - chr5_4:47285745-47285764 None:intergenic 55.0%
GGAGCCAATCATCCCCCAAA+AGG - chr5_4:47285952-47285971 None:intergenic 55.0%
CCCCGCCATCATTTCTTGAC+CGG - chr5_4:47286064-47286083 None:intergenic 55.0%
! CCGGTCAAGAAATGATGGCG+GGG + chr5_4:47286061-47286080 Msa0854630:CDS 55.0%
!! TGATGGCGGGGAAGGATCAA+AGG + chr5_4:47286073-47286092 Msa0854630:CDS 55.0%
! GAAGTATCACCCTCGCAACC+AGG + chr5_4:47286125-47286144 Msa0854630:CDS 55.0%
ATCTCTCCCGAACCCCAGTT+TGG + chr5_4:47287822-47287841 Msa0854630:CDS 55.0%
TCTCTCCCGAACCCCAGTTT+GGG + chr5_4:47287823-47287842 Msa0854630:CDS 55.0%
GTGTTCCCAAACTGGGGTTC+GGG - chr5_4:47287831-47287850 None:intergenic 55.0%
CAGATAAACCCGTCTTCCGG+TGG - chr5_4:47287864-47287883 None:intergenic 55.0%
! CACCGGAAGACGGGTTTATC+TGG + chr5_4:47287862-47287881 Msa0854630:CDS 55.0%
AGATACCTGGCTTCAACCCG+AGG + chr5_4:47287904-47287923 Msa0854630:CDS 55.0%
AGAGGGAGCTTCGAACCTCA+AGG + chr5_4:47288963-47288982 Msa0854630:intron 55.0%
GAGGGAGCTTCGAACCTCAA+GGG + chr5_4:47288964-47288983 Msa0854630:intron 55.0%
AGAGCCAGTGGCTACCATCA+TGG + chr5_4:47289746-47289765 Msa0854630:intron 55.0%
AAGACACACCCACAACTCGC+GGG + chr5_4:47290098-47290117 Msa0854630:intron 55.0%
CCCACAACTCGCGGGAAAAA+AGG + chr5_4:47290106-47290125 Msa0854630:intron 55.0%
!!! GCCTTTTTTCCCGCGAGTTG+TGG - chr5_4:47290110-47290129 None:intergenic 55.0%
ATTCCGGCATCATGACCGAG+TGG - chr5_4:47290182-47290201 None:intergenic 55.0%
GATCTCCCGCCAGTGTGTTA+TGG + chr5_4:47290358-47290377 Msa0854630:intron 55.0%
TGATGGGGCCAACCTTGTGT+GGG + chr5_4:47291273-47291292 Msa0854630:intron 55.0%
GTGTGGGTTTGTGTTGGGTG+GGG + chr5_4:47291289-47291308 Msa0854630:intron 55.0%
ATCCGTCGGAGCAGCTAACA+TGG - chr5_4:47291557-47291576 None:intergenic 55.0%
ATGTTAGCTGCTCCGACGGA+TGG + chr5_4:47291556-47291575 Msa0854630:CDS 55.0%
GGGATCAGCAAACTCCACGG+AGG - chr5_4:47285742-47285761 None:intergenic 60.0%
! AGTGGTGGCGATCGTTCCCT+TGG - chr5_4:47286024-47286043 None:intergenic 60.0%
CACCCTCGCAACCAGGAGAA+AGG + chr5_4:47286132-47286151 Msa0854630:CDS 60.0%
GGAGCTTCGAACCTCAAGGG+AGG + chr5_4:47288967-47288986 Msa0854630:intron 60.0%
GCTTCGAACCTCAAGGGAGG+TGG + chr5_4:47288970-47288989 Msa0854630:intron 60.0%
CTCAAGCTCCACCTCCCTTG+AGG - chr5_4:47288981-47289000 None:intergenic 60.0%
! GTGATGGGGCCAACCTTGTG+TGG + chr5_4:47291272-47291291 Msa0854630:intron 60.0%
GGTTTGTGTTGGGTGGGGTC+CGG + chr5_4:47291294-47291313 Msa0854630:intron 60.0%
GTTTGTGTTGGGTGGGGTCC+GGG + chr5_4:47291295-47291314 Msa0854630:intron 60.0%
TTTGTGTTGGGTGGGGTCCG+GGG + chr5_4:47291296-47291315 Msa0854630:intron 60.0%
AGAGGCCAAACAAACGCCCC+CGG - chr5_4:47291316-47291335 None:intergenic 60.0%
GGGCGTTTGTTTGGCCTCTC+AGG + chr5_4:47291317-47291336 Msa0854630:intron 60.0%
GGAGCAGCTAACATGGCCTC+TGG - chr5_4:47291550-47291569 None:intergenic 60.0%
GGCCATGTTAGCTGCTCCGA+CGG + chr5_4:47291552-47291571 Msa0854630:CDS 60.0%
TTAGCTGCTCCGACGGATGG+TGG + chr5_4:47291559-47291578 Msa0854630:CDS 60.0%
TAGCTGCTCCGACGGATGGT+GGG + chr5_4:47291560-47291579 Msa0854630:CDS 60.0%
GGATGATGCCCACCATCCGT+CGG - chr5_4:47291571-47291590 None:intergenic 60.0%
CTGGCGGGAGATCCTCTTCC+CGG - chr5_4:47290351-47290370 None:intergenic 65.0%
! GGAGGGTGCATAGGCTTCCG+AGG + chr5_4:47291184-47291203 Msa0854630:intron 65.0%
TTGTGTTGGGTGGGGTCCGG+GGG + chr5_4:47291297-47291316 Msa0854630:intron 65.0%
!! GGGGTCCGGGGGCGTTTGTT+TGG + chr5_4:47291308-47291327 Msa0854630:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 47285627 47291594 47285627 ID=Msa0854630;Name=Msa0854630
chr5_4 mRNA 47285627 47291594 47285627 ID=Msa0854630-mRNA-1;Parent=Msa0854630;Name=Msa0854630-mRNA-1;_AED=0.27;_eAED=0.27;_QI=333|0.66|0.5|0.75|0|0.5|4|0|206
chr5_4 exon 47285627 47286153 47285627 ID=Msa0854630-mRNA-1:exon:14947;Parent=Msa0854630-mRNA-1
chr5_4 exon 47287785 47287925 47287785 ID=Msa0854630-mRNA-1:exon:14948;Parent=Msa0854630-mRNA-1
chr5_4 exon 47290526 47290740 47290526 ID=Msa0854630-mRNA-1:exon:14949;Parent=Msa0854630-mRNA-1
chr5_4 exon 47291527 47291594 47291527 ID=Msa0854630-mRNA-1:exon:14950;Parent=Msa0854630-mRNA-1
chr5_4 five_prime_UTR 47285627 47285959 47285627 ID=Msa0854630-mRNA-1:five_prime_utr;Parent=Msa0854630-mRNA-1
chr5_4 CDS 47285960 47286153 47285960 ID=Msa0854630-mRNA-1:cds;Parent=Msa0854630-mRNA-1
chr5_4 CDS 47287785 47287925 47287785 ID=Msa0854630-mRNA-1:cds;Parent=Msa0854630-mRNA-1
chr5_4 CDS 47290526 47290740 47290526 ID=Msa0854630-mRNA-1:cds;Parent=Msa0854630-mRNA-1
chr5_4 CDS 47291527 47291594 47291527 ID=Msa0854630-mRNA-1:cds;Parent=Msa0854630-mRNA-1
Gene Sequence

>Msa0854630

ATGATTGGCTCCAAAAACTCGCTGAGAAAGTTTGGGATTACCATACACAATATAAAAAAAACCAAGGGAACGATCGCCACCACTCTAGTGCTAGATTTTTTCCGGTCAAGAAATGATGGCGGGGAAGGATCAAAGGTGTATCAAGGAGATCATATGAAAGAAATAGAAGTATCACCCTCGCAACCAGGAGAAAGGAGAAAGAAATTGGAGACAGAGATAATAACAATAGTGATCTCTCCCGAACCCCAGTTTGGGAACACATACAAAATGCCACCGGAAGACGGGTTTATCTGGAAAGAATATGGAAGGAAAGAGATACCTGGCTTCAACCCGAGGAGTTACTACAGGTGCAACCACATGAAATTATATGCGTGTCGAGCCAGGAAGAAAGTACAACAACTTGGTGACCATCCAAACATATTTGAAGTTATATACAACGGTGGACATACCTGCCGCATGTCCTTAACAATACCATCAATGGATGTTACTCAAACCACCATGCCTACTTCGTCAACTTTATATTCTGGGTGGATTTCATCGGGCATACCAGGAAAATCCATAAACTCTATGCCAGAGGCCATGTTAGCTGCTCCGACGGATGGTGGGCATCATCCTATG
Protein sequence

>Msa0854630

MIGSKNSLRKFGITIHNIKKTKGTIATTLVLDFFRSRNDGGEGSKVYQGDHMKEIEVSPSQPGERRKKLETEIITIVISPEPQFGNTYKMPPEDGFIWKEYGRKEIPGFNPRSYYRCNHMKLYACRARKKVQQLGDHPNIFEVIYNGGHTCRMSLTIPSMDVTQTTMPTSSTLYSGWISSGIPGKSINSMPEAMLAAPTDGGHHPM