AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0776730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0776730 MtrunA17_Chr5g0431811 75.377 199 29 5 20 199 594 791 1.54e-92 291
Msa0776730 MtrunA17_Chr3g0126391 44.118 68 37 1 91 157 131 198 7.16e-16 74.7
Msa0776730 MtrunA17_Chr8g0387981 48.387 62 31 1 91 151 130 191 7.53e-14 68.9
Msa0776730 MtrunA17_Chr3g0128671 30.357 168 79 7 6 160 53 195 2.35e-13 67.4
Msa0776730 MtrunA17_Chr7g0244971 43.750 64 35 1 91 153 121 184 8.91e-13 65.5
Msa0776730 MtrunA17_Chr7g0244981 42.424 66 37 1 89 153 118 183 1.44e-12 65.1
Msa0776730 MtrunA17_Chr8g0347251 46.032 63 33 1 93 154 136 198 1.37e-11 62.4
Msa0776730 MtrunA17_Chr7g0275531 43.284 67 37 1 93 158 118 184 1.85e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0776730 AT2G40740.1 39.568 139 78 4 60 197 142 275 1.89e-25 100
Msa0776730 AT2G40740.3 39.568 139 78 4 60 197 151 284 2.47e-25 100
Msa0776730 AT2G46400.1 33.858 127 74 4 54 176 67 187 4.20e-16 75.5
Msa0776730 AT4G11070.2 40.625 96 52 2 64 158 84 175 1.81e-14 70.5
Msa0776730 AT4G11070.1 40.625 96 52 2 64 158 116 207 2.40e-14 70.5
Msa0776730 AT4G23810.1 40.000 95 52 2 63 156 132 222 2.68e-14 70.5
Msa0776730 AT3G56400.1 43.284 67 37 1 93 158 120 186 2.03e-13 67.8
Msa0776730 AT2G40740.2 38.372 86 50 1 112 197 149 231 3.25e-13 66.6
Msa0776730 AT5G22570.1 39.706 68 40 1 94 160 111 178 1.36e-12 65.5
Msa0776730 AT5G24110.1 28.000 175 107 6 1 168 21 183 1.65e-12 65.5
Msa0776730 AT1G66560.1 44.444 63 32 2 92 152 102 163 2.11e-12 64.3
Msa0776730 AT1G66550.2 42.188 64 36 1 90 152 100 163 2.53e-12 64.3
Msa0776730 AT1G66550.1 42.188 64 36 1 90 152 105 168 2.71e-12 64.3
Msa0776730 AT2G37260.1 42.500 80 38 3 93 171 349 421 4.73e-11 61.6
Msa0776730 AT2G37260.3 42.500 80 38 3 93 171 269 341 5.16e-11 61.2
Msa0776730 AT2G40750.1 43.333 60 33 1 93 151 152 211 5.21e-11 61.2
Msa0776730 AT2G37260.2 42.500 80 38 3 93 171 267 339 5.48e-11 61.2
Msa0776730 AT1G66600.1 38.667 75 37 2 79 152 97 163 6.17e-11 60.5

Find 89 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCCTCTGGCATAGAGTTTA+TGG 0.171782 5_2:-55265840 None:intergenic
AACAATTAGGGACATATTTA+AGG 0.175778 5_2:+55259935 Msa0776730:five_prime_UTR
CTGACAAAGGCGACAAATTT+TGG 0.195810 5_2:+55259984 Msa0776730:five_prime_UTR
TTCAAAGATTCGTAGAATTA+TGG 0.204532 5_2:+55260109 Msa0776730:five_prime_UTR
TTCATCACATGTTGGGTAAT+TGG 0.206411 5_2:-55260020 None:intergenic
ACTTCGTCAACTTTATATTC+TGG 0.243467 5_2:+55265002 Msa0776730:CDS
GGTTCCTAATTCATTATCTT+TGG 0.263537 5_2:-55260234 None:intergenic
ATGACCAAAGATAATGAATT+AGG 0.294145 5_2:+55260230 Msa0776730:five_prime_UTR
AGAGACTGGGGAAAACAATT+AGG 0.294854 5_2:+55259922 None:intergenic
TAATGGCAGGAGAAAGAAAT+TGG 0.297328 5_2:+55262083 Msa0776730:intron
GGATACATTGGAGAGCAATT+TGG 0.317424 5_2:+55260130 Msa0776730:five_prime_UTR
AAGTTGTTGTACTTTCTTCC+TGG 0.317889 5_2:-55264877 None:intergenic
CTTCGTCAACTTTATATTCT+GGG 0.329976 5_2:+55265003 Msa0776730:CDS
TAATGAATTAGGAACCCTTT+TGG 0.331804 5_2:+55260241 Msa0776730:five_prime_UTR
TGCTACGAGGACTCTTCTTT+AGG 0.341531 5_2:+55260167 Msa0776730:five_prime_UTR
TATATAACTTCAAATATGTT+TGG 0.345904 5_2:-55264909 None:intergenic
CACCGGAAGACGGGTTTATC+TGG 0.355975 5_2:+55262169 Msa0776730:CDS
TGTGTTCCCAAACTGGGGTT+CGG 0.363263 5_2:-55262136 None:intergenic
ATCTCTCCCGAACCCCAGTT+TGG 0.364203 5_2:+55262129 Msa0776730:CDS
AGACTTGCTCTAATGTTTGC+TGG 0.368138 5_2:-55260067 None:intergenic
GGGTTTATCTGGAAAGAATA+TGG 0.380541 5_2:+55262180 Msa0776730:CDS
TCATCACATGTTGGGTAATT+GGG 0.383234 5_2:-55260019 None:intergenic
ATCCATTGATGGTATTGTTA+AGG 0.387780 5_2:-55264958 None:intergenic
CCCCGCCATCATTTCTTGAC+CGG 0.393350 5_2:-55260368 None:intergenic
GTGTTCCCAAACTGGGGTTC+GGG 0.408159 5_2:-55262135 None:intergenic
TAGGGACATATTTAAGGAGT+TGG 0.415790 5_2:+55259941 Msa0776730:five_prime_UTR
AAGGAGTTGGAGTATTTGAT+TGG 0.419385 5_2:+55259954 Msa0776730:five_prime_UTR
AAAACTCGCTGAGAAAGTTT+GGG 0.424967 5_2:+55260280 Msa0776730:CDS
TTCCAGATAAACCCGTCTTC+CGG 0.427566 5_2:-55262171 None:intergenic
ATATTCTGGGTGGATTTCAT+CGG 0.427674 5_2:+55265016 Msa0776730:CDS
TTTGTATGTGTTCCCAAACT+GGG 0.440270 5_2:-55262142 None:intergenic
TCTCTCCCGAACCCCAGTTT+GGG 0.442895 5_2:+55262130 Msa0776730:CDS
TATTCTGGGTGGATTTCATC+GGG 0.444409 5_2:+55265017 Msa0776730:CDS
AGTGGTGGCGATCGTTCCCT+TGG 0.462989 5_2:-55260328 None:intergenic
GTTTGAGTAACATCCATTGA+TGG 0.463141 5_2:-55264969 None:intergenic
TTTGTTTCAGGAGTTACTAC+AGG 0.465753 5_2:+55264823 Msa0776730:intron
GTCCTTAACAATACCATCAA+TGG 0.466957 5_2:+55264956 Msa0776730:CDS
AATTATATGCGTGTCGAGCC+AGG 0.475350 5_2:+55264859 Msa0776730:CDS
TGGATTTCATCGGGCATACC+AGG 0.487949 5_2:+55265026 Msa0776730:CDS
TTAGCTGCTCCGACGGATGG+TGG 0.488050 5_2:+55265866 Msa0776730:CDS
GACTTGCTCTAATGTTTGCT+GGG 0.491728 5_2:-55260066 None:intergenic
GAGACTGGGGAAAACAATTA+GGG 0.498215 5_2:+55259923 None:intergenic
TACAAAATGCCACCGGAAGA+CGG 0.501523 5_2:+55262159 Msa0776730:CDS
CACCCTCGCAACCAGGAGAA+AGG 0.510246 5_2:+55260439 Msa0776730:CDS
ACAAAATGCCACCGGAAGAC+GGG 0.511101 5_2:+55262160 Msa0776730:CDS
ATGTTAGCTGCTCCGACGGA+TGG 0.511981 5_2:+55265863 Msa0776730:CDS
TCCGGTCAAGAAATGATGGC+GGG 0.512447 5_2:+55260367 Msa0776730:CDS
GAATATAAAGTTGACGAAGT+AGG 0.519575 5_2:-55264999 None:intergenic
TACCTTTCTCCTGGTTGCGA+GGG 0.522243 5_2:-55260441 None:intergenic
TCAAGAAATGATGGCGGGGA+AGG 0.522448 5_2:+55260372 Msa0776730:CDS
GAGGTAGTTCATCACATGTT+GGG 0.528887 5_2:-55260027 None:intergenic
GGAGCAGCTAACATGGCCTC+TGG 0.529383 5_2:-55265854 None:intergenic
ATACCTTTCTCCTGGTTGCG+AGG 0.537516 5_2:-55260442 None:intergenic
AAATACCTCGGGTTGAAGCC+AGG 0.538543 5_2:-55262216 None:intergenic
TAACTTCAAATATGTTTGGA+TGG 0.540945 5_2:-55264905 None:intergenic
GGCCATGTTAGCTGCTCCGA+CGG 0.545472 5_2:+55265859 Msa0776730:CDS
TCGTAGAATTATGGATACAT+TGG 0.561410 5_2:+55260118 Msa0776730:five_prime_UTR
GAAGGATCAAAGGTGTATCA+AGG 0.565861 5_2:+55260390 Msa0776730:CDS
TAGCTGCTCCGACGGATGGT+GGG 0.569296 5_2:+55265867 Msa0776730:CDS
ATCCGTCGGAGCAGCTAACA+TGG 0.572394 5_2:-55265861 None:intergenic
TGATGGCGGGGAAGGATCAA+AGG 0.572892 5_2:+55260380 Msa0776730:CDS
GAAGTATCACCCTCGCAACC+AGG 0.581020 5_2:+55260432 Msa0776730:CDS
GGAGGTAGTTCATCACATGT+TGG 0.586269 5_2:-55260028 None:intergenic
CAGATAAACCCGTCTTCCGG+TGG 0.589083 5_2:-55262168 None:intergenic
TATTGTTAAGGACATGCGGC+AGG 0.597318 5_2:-55264946 None:intergenic
TTATCTGGAAAGAATATGGA+AGG 0.599335 5_2:+55262184 Msa0776730:CDS
TTGTATGTGTTCCCAAACTG+GGG 0.599512 5_2:-55262141 None:intergenic
TAAAGTTGACGAAGTAGGCA+TGG 0.601902 5_2:-55264994 None:intergenic
ACGAATCTTTGAAGAAAGTG+AGG 0.606278 5_2:-55260099 None:intergenic
AGGAAGAAAGTACAACAACT+TGG 0.610203 5_2:+55264879 Msa0776730:CDS
CGTCAACTTTATATTCTGGG+TGG 0.614331 5_2:+55265006 Msa0776730:CDS
GACACGCATATAATTTCATG+TGG 0.627518 5_2:-55264851 None:intergenic
TTCCGGTCAAGAAATGATGG+CGG 0.631799 5_2:+55260366 Msa0776730:CDS
AGATACCTGGCTTCAACCCG+AGG 0.632242 5_2:+55262211 Msa0776730:CDS
ATGGTATTGTTAAGGACATG+CGG 0.637436 5_2:-55264950 None:intergenic
AAAATCTAGCACTAGAGTGG+TGG 0.640432 5_2:-55260343 None:intergenic
ATCCATAAACTCTATGCCAG+AGG 0.646131 5_2:+55265838 Msa0776730:CDS
GGATGATGCCCACCATCCGT+CGG 0.648793 5_2:-55265875 None:intergenic
TATGGAAGGAAAGAGATACC+TGG 0.657804 5_2:+55262198 Msa0776730:CDS
GCTGGGATCAGCAAACTCCA+CGG 0.659970 5_2:-55260049 None:intergenic
CCGGTCAAGAAATGATGGCG+GGG 0.666039 5_2:+55260368 Msa0776730:CDS
TTTGAAGTTATATACAACGG+TGG 0.672572 5_2:+55264918 Msa0776730:CDS
GAACACATACAAAATGCCAC+CGG 0.673182 5_2:+55262152 Msa0776730:CDS
TCATCTCAACTATATATGTG+TGG 0.676518 5_2:-55260211 None:intergenic
ATATTTGAAGTTATATACAA+CGG 0.679230 5_2:+55264915 Msa0776730:CDS
GATTGGTCGAGATCTGACAA+AGG 0.707472 5_2:+55259971 Msa0776730:five_prime_UTR
AGTTGACGAAGTAGGCATGG+TGG 0.721158 5_2:-55264991 None:intergenic
CATGTGATGAACTACCTCCG+TGG 0.736681 5_2:+55260032 Msa0776730:five_prime_UTR
GGGATCAGCAAACTCCACGG+AGG 0.794892 5_2:-55260046 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAATAAAAAAATA+AGG + chr5_2:55264565-55264584 Msa0776730:intron 0.0%
!! TTATAATGATATCTTTATAT+CGG + chr5_2:55261873-55261892 Msa0776730:intron 10.0%
!! TAATTGTAAATAGAAATATA+TGG - chr5_2:55262061-55262080 None:intergenic 10.0%
!! TTCTATTTACAATTAATTAA+TGG + chr5_2:55262066-55262085 Msa0776730:intron 10.0%
!!! ATTAAGTAATTAATTTTGTT+AGG + chr5_2:55262246-55262265 Msa0776730:intron 10.0%
!!! AGAAAAATGAAATTTTTTAA+TGG + chr5_2:55262839-55262858 Msa0776730:intron 10.0%
!! TAAACAAAACAAAAAAAATA+AGG - chr5_2:55263197-55263216 None:intergenic 10.0%
!!! AACTCTAAAAATATTACTAA+TGG - chr5_2:55260907-55260926 None:intergenic 15.0%
!! TAACGTATATTTAAGAATAA+AGG + chr5_2:55262030-55262049 Msa0776730:intron 15.0%
!!! ACAAATTTTGTATTTTCTAA+CGG - chr5_2:55262599-55262618 None:intergenic 15.0%
!!! AAATTTCATTTTTCTAAGAA+TGG - chr5_2:55262834-55262853 None:intergenic 15.0%
!! AAAACAAAAAAAATAAGGTT+AGG - chr5_2:55263192-55263211 None:intergenic 15.0%
!! ATTAAATTACATTATAGTCT+AGG + chr5_2:55263802-55263821 Msa0776730:intron 15.0%
!! TTAAATTACATTATAGTCTA+GGG + chr5_2:55263803-55263822 Msa0776730:intron 15.0%
!!! TTTTTATATGCATAAACATA+AGG - chr5_2:55264552-55264571 None:intergenic 15.0%
!! TATATAACTTCAAATATGTT+TGG - chr5_2:55264912-55264931 None:intergenic 15.0%
!! ATATATATATATAGCGAAAA+GGG - chr5_2:55265757-55265776 None:intergenic 15.0%
!! TATATATATATATAGCGAAA+AGG - chr5_2:55265758-55265777 None:intergenic 15.0%
!!! GGTTTTTTTTATATTGTGTA+TGG - chr5_2:55260310-55260329 None:intergenic 20.0%
!! ACACAATATAAAAAAAACCA+AGG + chr5_2:55260311-55260330 Msa0776730:CDS 20.0%
!! CACAATATAAAAAAAACCAA+GGG + chr5_2:55260312-55260331 Msa0776730:CDS 20.0%
!! TAATAAAATTCTAGACCAAA+AGG + chr5_2:55260706-55260725 Msa0776730:intron 20.0%
!!! CACTTTTTTTTTTTTCCTTT+TGG - chr5_2:55260724-55260743 None:intergenic 20.0%
!!! ACGAATTTGTTTAATACAAT+AGG + chr5_2:55260768-55260787 Msa0776730:intron 20.0%
!!! CACTTTTTTTTAACAAATAG+AGG - chr5_2:55260830-55260849 None:intergenic 20.0%
!! TTCCAATGTAAAATTATTCA+TGG + chr5_2:55260878-55260897 Msa0776730:intron 20.0%
!!! AACCATGAATAATTTTACAT+TGG - chr5_2:55260883-55260902 None:intergenic 20.0%
!!! TAGTAATATTTTTAGAGTTG+CGG + chr5_2:55260908-55260927 Msa0776730:intron 20.0%
!!! ATCCTTTTTTGTTTTGTTTT+TGG - chr5_2:55261711-55261730 None:intergenic 20.0%
!! ATTTACAATTAATTAATGGC+AGG + chr5_2:55262070-55262089 Msa0776730:intron 20.0%
!! TGCATAAAATAGATACAAAA+AGG + chr5_2:55263053-55263072 Msa0776730:intron 20.0%
!!! AAATAAGGTTAGGTTTTTTA+AGG - chr5_2:55263182-55263201 None:intergenic 20.0%
!! TTAATTATGGATATTTGGTT+TGG - chr5_2:55263479-55263498 None:intergenic 20.0%
!!! AGTATTTTACGAGTTAATTA+TGG - chr5_2:55263492-55263511 None:intergenic 20.0%
!! TAGTTAGAGATATAAAGATT+AGG + chr5_2:55263518-55263537 Msa0776730:intron 20.0%
!! AATGTATGTTAACTAAATTC+AGG + chr5_2:55263681-55263700 Msa0776730:intron 20.0%
!!! CAATTCAAGTTTCTAATAAT+AGG + chr5_2:55263999-55264018 Msa0776730:intron 20.0%
!!! TGGAGATAATATTTTTCAAT+AGG - chr5_2:55264128-55264147 None:intergenic 20.0%
!! ATTATACATCAATGAGAAAA+TGG + chr5_2:55264225-55264244 Msa0776730:intron 20.0%
!!! ATTTTTGTTGTTTTTGTTTC+AGG + chr5_2:55264811-55264830 Msa0776730:intron 20.0%
!!! TTTTTACCATAAAAAATACC+TGG - chr5_2:55265047-55265066 None:intergenic 20.0%
!! TCATTAGCAATAAAATTGTA+AGG + chr5_2:55265198-55265217 Msa0776730:intron 20.0%
!!! TGAAAATATATCTGGTTTAT+TGG + chr5_2:55265326-55265345 Msa0776730:intron 20.0%
!! TATATATATATAGCGAAAAG+GGG - chr5_2:55265756-55265775 None:intergenic 20.0%
! AACAATTAGGGACATATTTA+AGG + chr5_2:55259935-55259954 Msa0776730:five_prime_UTR 25.0%
! TTCAAAGATTCGTAGAATTA+TGG + chr5_2:55260109-55260128 Msa0776730:five_prime_UTR 25.0%
! ATGACCAAAGATAATGAATT+AGG + chr5_2:55260230-55260249 Msa0776730:five_prime_UTR 25.0%
! ACATTAAAGATGCTCTAATA+AGG - chr5_2:55260548-55260567 None:intergenic 25.0%
!! AAAGTGTAATCAATTTTGTC+AGG + chr5_2:55260844-55260863 Msa0776730:intron 25.0%
!!! AGTAATATTTTTAGAGTTGC+GGG + chr5_2:55260909-55260928 Msa0776730:intron 25.0%
! TAAAATCTAGTCAACAGTTA+AGG + chr5_2:55261112-55261131 Msa0776730:intron 25.0%
! TTCCTTCAAACAAAAAGTTT+AGG + chr5_2:55261145-55261164 Msa0776730:intron 25.0%
! AAACAAATGCTACATATCAT+GGG - chr5_2:55261174-55261193 None:intergenic 25.0%
! AAAACAAATGCTACATATCA+TGG - chr5_2:55261175-55261194 None:intergenic 25.0%
! GTGAACTTCAAATATTTCAA+TGG + chr5_2:55261416-55261435 Msa0776730:intron 25.0%
! AACTAGATTAAGTTTCAACA+TGG + chr5_2:55261440-55261459 Msa0776730:intron 25.0%
! ACTAGATTAAGTTTCAACAT+GGG + chr5_2:55261441-55261460 Msa0776730:intron 25.0%
! TGTTATCAGTAATTAGGAAA+AGG + chr5_2:55261536-55261555 Msa0776730:intron 25.0%
! GATTATTTATGTGATGTATG+TGG - chr5_2:55261569-55261588 None:intergenic 25.0%
! GACCAAAAACAAAACAAAAA+AGG + chr5_2:55261706-55261725 Msa0776730:intron 25.0%
! TTAATTGACCATAAATACCT+CGG - chr5_2:55262231-55262250 None:intergenic 25.0%
! AATTTCGAGATATAAACATG+AGG + chr5_2:55262710-55262729 Msa0776730:intron 25.0%
! TAGAAACTGAAATAAAGTTG+TGG - chr5_2:55262778-55262797 None:intergenic 25.0%
! AAGAATGGTGAAGAAATTAA+AGG - chr5_2:55262819-55262838 None:intergenic 25.0%
!!! TGAAATTTTTTAATGGACCT+TGG + chr5_2:55262846-55262865 Msa0776730:intron 25.0%
!!! TGGGAAGATTAAGAATTTTT+TGG + chr5_2:55262885-55262904 Msa0776730:intron 25.0%
!!! ATGGTTGATAACTAAAAGTA+GGG - chr5_2:55262949-55262968 None:intergenic 25.0%
!! TGTATCTATTTTATGCATCT+TGG - chr5_2:55263050-55263069 None:intergenic 25.0%
!!! ATTCTATGATTTTGGAAGTA+TGG - chr5_2:55263126-55263145 None:intergenic 25.0%
! ATACTTCCAAAATCATAGAA+TGG + chr5_2:55263125-55263144 Msa0776730:intron 25.0%
! ACAGATAAAATCCACATATT+GGG - chr5_2:55263250-55263269 None:intergenic 25.0%
! TACAGATAAAATCCACATAT+TGG - chr5_2:55263251-55263270 None:intergenic 25.0%
! ACGAGTTAATTATGGATATT+TGG - chr5_2:55263484-55263503 None:intergenic 25.0%
! TTAGTTAACATACATTCCTT+TGG - chr5_2:55263677-55263696 None:intergenic 25.0%
! ATAGAATTCTTCGAAGATAT+GGG + chr5_2:55264180-55264199 Msa0776730:intron 25.0%
! AAAAAAATAAGGCTAGAATC+TGG + chr5_2:55264576-55264595 Msa0776730:intron 25.0%
! TAACTTCAAATATGTTTGGA+TGG - chr5_2:55264908-55264927 None:intergenic 25.0%
! ACACTTCTCTCATTATTTAT+TGG - chr5_2:55265082-55265101 None:intergenic 25.0%
! AGAAAGCTTGAAAATATATC+TGG + chr5_2:55265318-55265337 Msa0776730:intron 25.0%
! AAAGCAAACAATTCTATCTA+GGG - chr5_2:55265382-55265401 None:intergenic 25.0%
! TAAAGCAAACAATTCTATCT+AGG - chr5_2:55265383-55265402 None:intergenic 25.0%
TCGTAGAATTATGGATACAT+TGG + chr5_2:55260118-55260137 Msa0776730:five_prime_UTR 30.0%
AGAAAAATCTATATGCTACG+AGG + chr5_2:55260154-55260173 Msa0776730:five_prime_UTR 30.0%
TCATCTCAACTATATATGTG+TGG - chr5_2:55260214-55260233 None:intergenic 30.0%
GGTTCCTAATTCATTATCTT+TGG - chr5_2:55260237-55260256 None:intergenic 30.0%
! TAATGAATTAGGAACCCTTT+TGG + chr5_2:55260241-55260260 Msa0776730:five_prime_UTR 30.0%
! AATGAATTAGGAACCCTTTT+GGG + chr5_2:55260242-55260261 Msa0776730:five_prime_UTR 30.0%
TCACATGAGATCACTTATTA+TGG + chr5_2:55260993-55261012 Msa0776730:intron 30.0%
!! CTTTTTGTTTGAAGGAATCA+TGG - chr5_2:55261142-55261161 None:intergenic 30.0%
!! CACCTAAACTTTTTGTTTGA+AGG - chr5_2:55261150-55261169 None:intergenic 30.0%
CTTCAAACAAAAAGTTTAGG+TGG + chr5_2:55261148-55261167 Msa0776730:intron 30.0%
TTCGTAACAAATACATGGAA+AGG + chr5_2:55261394-55261413 Msa0776730:intron 30.0%
AACATGGGATAAGAAATTAC+CGG + chr5_2:55261456-55261475 Msa0776730:intron 30.0%
CAGTTGTGTTATCAGTAATT+AGG + chr5_2:55261530-55261549 Msa0776730:intron 30.0%
CACATAAATAATCATGCACA+AGG + chr5_2:55261576-55261595 Msa0776730:intron 30.0%
AATATTTGAACTTTGCCGTA+AGG - chr5_2:55261639-55261658 None:intergenic 30.0%
TCAAATATTAAGTCTCGTGT+TGG + chr5_2:55261650-55261669 Msa0776730:intron 30.0%
TGGTAACAAATCATGCAATT+TGG - chr5_2:55261737-55261756 None:intergenic 30.0%
!! TGATAGTGAGCAATTTTGTA+TGG + chr5_2:55261827-55261846 Msa0776730:intron 30.0%
! GATAGTGAGCAATTTTGTAT+GGG + chr5_2:55261828-55261847 Msa0776730:intron 30.0%
! AGAGAAGACTAGGTTTTTAT+TGG - chr5_2:55261909-55261928 None:intergenic 30.0%
TTATCTGGAAAGAATATGGA+AGG + chr5_2:55262184-55262203 Msa0776730:CDS 30.0%
TAATTGACCATAAATACCTC+GGG - chr5_2:55262230-55262249 None:intergenic 30.0%
ATGAGTGTTTAGTGTAAAAC+TGG - chr5_2:55262326-55262345 None:intergenic 30.0%
TGAATGAAGTTAGCAAACAA+GGG - chr5_2:55262351-55262370 None:intergenic 30.0%
TTGAATGAAGTTAGCAAACA+AGG - chr5_2:55262352-55262371 None:intergenic 30.0%
!! CTCTAGTTATTTTCACTACA+AGG - chr5_2:55262500-55262519 None:intergenic 30.0%
CTTGTAGTGAAAATAACTAG+AGG + chr5_2:55262498-55262517 Msa0776730:intron 30.0%
TGGATCCTTTAACACTTTAT+GGG - chr5_2:55262738-55262757 None:intergenic 30.0%
ATGGATCCTTTAACACTTTA+TGG - chr5_2:55262739-55262758 None:intergenic 30.0%
! GAAATTAAAGGCTTTGTCTT+CGG - chr5_2:55262807-55262826 None:intergenic 30.0%
! AAAACTGGTTTATCATTCCA+AGG - chr5_2:55262866-55262885 None:intergenic 30.0%
! TTGGAATGATAAACCAGTTT+TGG + chr5_2:55262865-55262884 Msa0776730:intron 30.0%
! TGGAATGATAAACCAGTTTT+GGG + chr5_2:55262866-55262885 Msa0776730:intron 30.0%
ATTCTTAATCTTCCCAAAAC+TGG - chr5_2:55262881-55262900 None:intergenic 30.0%
!! TGGTTGATAACTAAAAGTAG+GGG - chr5_2:55262948-55262967 None:intergenic 30.0%
!! GATGGTTGATAACTAAAAGT+AGG - chr5_2:55262950-55262969 None:intergenic 30.0%
GTGTTAGATCAAGAGATAAA+TGG + chr5_2:55262988-55263007 Msa0776730:intron 30.0%
!! ATTTTGGAAGTATGGTTAGT+CGG - chr5_2:55263118-55263137 None:intergenic 30.0%
!!! TTTTAAGGCTGTACTTAATC+AGG - chr5_2:55263167-55263186 None:intergenic 30.0%
! TATGTGGATTTTATCTGTAG+AGG + chr5_2:55263252-55263271 Msa0776730:intron 30.0%
! ATGTGGATTTTATCTGTAGA+GGG + chr5_2:55263253-55263272 Msa0776730:intron 30.0%
AAACAACGGAACAATAACTT+AGG + chr5_2:55263630-55263649 Msa0776730:intron 30.0%
AAGACAGATCAATAAGATAG+CGG + chr5_2:55263776-55263795 Msa0776730:intron 30.0%
CTACTTCACAAATTAGATTG+AGG + chr5_2:55264029-55264048 Msa0776730:intron 30.0%
! GATGAATTGATTCTTGTGTT+TGG - chr5_2:55264148-55264167 None:intergenic 30.0%
GAATCAATTCATCATCTTCT+TGG + chr5_2:55264155-55264174 Msa0776730:intron 30.0%
GATAGAATTCTTCGAAGATA+TGG + chr5_2:55264179-55264198 Msa0776730:intron 30.0%
TGTTTGCAGTATAACTTTGT+CGG - chr5_2:55264265-55264284 None:intergenic 30.0%
ACAAAGTTATACTGCAAACA+GGG + chr5_2:55264265-55264284 Msa0776730:intron 30.0%
CTAGACATTTCATATTAGTG+TGG + chr5_2:55264294-55264313 Msa0776730:intron 30.0%
CAAAAGTGACCATATATAGA+CGG + chr5_2:55264445-55264464 Msa0776730:intron 30.0%
ACTTAAACACTAAAACCACT+CGG + chr5_2:55264471-55264490 Msa0776730:intron 30.0%
! TTTTGTACGCATATACATTC+CGG - chr5_2:55264505-55264524 None:intergenic 30.0%
ATATGCATAAACATAAGGCA+CGG - chr5_2:55264547-55264566 None:intergenic 30.0%
! ATCCATTGATGGTATTGTTA+AGG - chr5_2:55264961-55264980 None:intergenic 30.0%
GAATATAAAGTTGACGAAGT+AGG - chr5_2:55265002-55265021 None:intergenic 30.0%
ACTTCGTCAACTTTATATTC+TGG + chr5_2:55265002-55265021 Msa0776730:CDS 30.0%
CTTCGTCAACTTTATATTCT+GGG + chr5_2:55265003-55265022 Msa0776730:CDS 30.0%
GTTTATATACTCCCAAACAA+AGG + chr5_2:55265227-55265246 Msa0776730:intron 30.0%
TTATTGGATCCAATTCAAAG+TGG + chr5_2:55265342-55265361 Msa0776730:intron 30.0%
ACAATTCTATCTAGGGAATT+TGG - chr5_2:55265375-55265394 None:intergenic 30.0%
AGAATTGTTTGCTTTATGAG+TGG + chr5_2:55265387-55265406 Msa0776730:intron 30.0%
CCAAGAAAAAGGAAACTTAT+TGG - chr5_2:55265438-55265457 None:intergenic 30.0%
! CCAATAAGTTTCCTTTTTCT+TGG + chr5_2:55265435-55265454 Msa0776730:intron 30.0%
AACAAAAGGTAAACAGAGAA+AGG - chr5_2:55265668-55265687 None:intergenic 30.0%
! TTTCTCTGTTTACCTTTTGT+TGG + chr5_2:55265667-55265686 Msa0776730:intron 30.0%
CAGATACAAAAGAAATGGAA+AGG - chr5_2:55265700-55265719 None:intergenic 30.0%
GTTGTCAGATACAAAAGAAA+TGG - chr5_2:55265705-55265724 None:intergenic 30.0%
TTACAGTAATTGAATTCCAC+AGG + chr5_2:55265812-55265831 Msa0776730:intron 30.0%
TAGGGACATATTTAAGGAGT+TGG + chr5_2:55259941-55259960 Msa0776730:five_prime_UTR 35.0%
! AAGGAGTTGGAGTATTTGAT+TGG + chr5_2:55259954-55259973 Msa0776730:five_prime_UTR 35.0%
TCATCACATGTTGGGTAATT+GGG - chr5_2:55260022-55260041 None:intergenic 35.0%
TTCATCACATGTTGGGTAAT+TGG - chr5_2:55260023-55260042 None:intergenic 35.0%
! ACGAATCTTTGAAGAAAGTG+AGG - chr5_2:55260102-55260121 None:intergenic 35.0%
! ATGAATTAGGAACCCTTTTG+GGG + chr5_2:55260243-55260262 Msa0776730:five_prime_UTR 35.0%
! AAACTTTCTCAGCGAGTTTT+TGG - chr5_2:55260280-55260299 None:intergenic 35.0%
AAAAACTCGCTGAGAAAGTT+TGG + chr5_2:55260279-55260298 Msa0776730:CDS 35.0%
AAAACTCGCTGAGAAAGTTT+GGG + chr5_2:55260280-55260299 Msa0776730:CDS 35.0%
GAAAAAATCTAGCACTAGAG+TGG - chr5_2:55260349-55260368 None:intergenic 35.0%
!!! CTCTAGTGCTAGATTTTTTC+CGG + chr5_2:55260349-55260368 Msa0776730:CDS 35.0%
! TTTTTCCGGTCAAGAAATGA+TGG + chr5_2:55260363-55260382 Msa0776730:CDS 35.0%
!! AAGTTTTGATACCTTTCTCC+TGG - chr5_2:55260453-55260472 None:intergenic 35.0%
TGCATATTACTTACTCTCGT+TGG + chr5_2:55260594-55260613 Msa0776730:intron 35.0%
!!! ATATTTTTAGAGTTGCGGGT+TGG + chr5_2:55260913-55260932 Msa0776730:intron 35.0%
TTTGAGTGAAGGAATCATGT+AGG - chr5_2:55261221-55261240 None:intergenic 35.0%
!! AAGTGAGCAATTTTGAGTGA+AGG - chr5_2:55261232-55261251 None:intergenic 35.0%
AACTCACGTTGAGAATATTG+TGG - chr5_2:55261268-55261287 None:intergenic 35.0%
AACGTGAGTTATCTCACATT+CGG + chr5_2:55261278-55261297 Msa0776730:intron 35.0%
CAACATGAGTTAACTCATGT+TGG - chr5_2:55261307-55261326 None:intergenic 35.0%
CAACATGAGTTAACTCATGT+TGG + chr5_2:55261307-55261326 Msa0776730:intron 35.0%
AGTTAACTCACGTAGGTTAT+AGG - chr5_2:55261333-55261352 None:intergenic 35.0%
AGAAGATATGACTTTCTGTC+CGG - chr5_2:55261478-55261497 None:intergenic 35.0%
!! CTGCTACTTTGTATTTCCAT+TGG - chr5_2:55261608-55261627 None:intergenic 35.0%
GTGAGTTAACTCAAGGTTAT+AGG + chr5_2:55261759-55261778 Msa0776730:intron 35.0%
TAATGGCAGGAGAAAGAAAT+TGG + chr5_2:55262083-55262102 Msa0776730:intron 35.0%
TTTGTATGTGTTCCCAAACT+GGG - chr5_2:55262145-55262164 None:intergenic 35.0%
! TTTTGTATGTGTTCCCAAAC+TGG - chr5_2:55262146-55262165 None:intergenic 35.0%
GGGTTTATCTGGAAAGAATA+TGG + chr5_2:55262180-55262199 Msa0776730:CDS 35.0%
AGTGTTTAGTGTAAAACTGG+AGG - chr5_2:55262323-55262342 None:intergenic 35.0%
AGAGGTCTATATAGATGACA+TGG + chr5_2:55262516-55262535 Msa0776730:intron 35.0%
GATAGTTCAAAATGCTCCTT+TGG + chr5_2:55262622-55262641 Msa0776730:intron 35.0%
!!! AGCTAAGGAATTTTCTAGCT+TGG - chr5_2:55262651-55262670 None:intergenic 35.0%
TGGTTCTTCTCATTAGATGA+TGG - chr5_2:55262758-55262777 None:intergenic 35.0%
!! ATTTGGCCTTATTAGAACGT+AGG - chr5_2:55262916-55262935 None:intergenic 35.0%
GTTCTAATAAGGCCAAATCA+AGG + chr5_2:55262918-55262937 Msa0776730:intron 35.0%
! CATCGATTATTTCCTTTGCA+CGG + chr5_2:55262966-55262985 Msa0776730:intron 35.0%
! CACGAAATTGCGTAGTTTTT+CGG - chr5_2:55263016-55263035 None:intergenic 35.0%
CTTCCAAAATCATAGAATGG+TGG + chr5_2:55263128-55263147 Msa0776730:intron 35.0%
! TGACCACCATTCTATGATTT+TGG - chr5_2:55263134-55263153 None:intergenic 35.0%
TTGAATTGATCTACGTTCCA+AGG + chr5_2:55263551-55263570 Msa0776730:intron 35.0%
TGAATTGATCTACGTTCCAA+GGG + chr5_2:55263552-55263571 Msa0776730:intron 35.0%
TCTCTTGGTATTGTAAAGCT+TGG - chr5_2:55263605-55263624 None:intergenic 35.0%
!!! TTTGGTGCTTGGTTTTAGAA+GGG - chr5_2:55263659-55263678 None:intergenic 35.0%
! AAATTCAGGAGAGTGTAGAT+TGG + chr5_2:55263695-55263714 Msa0776730:intron 35.0%
TCTTCTTCTAATACTGAACG+AGG - chr5_2:55263729-55263748 None:intergenic 35.0%
TAGGGAAAACTGCATAAAAG+AGG + chr5_2:55263821-55263840 Msa0776730:intron 35.0%
TAGGTAAACGAAGTAATGTG+TGG + chr5_2:55263867-55263886 Msa0776730:intron 35.0%
TACTTCGAGCAAGTTTCTAT+TGG + chr5_2:55263925-55263944 Msa0776730:intron 35.0%
ACTCTGTCTAGTAATAGAGT+GGG - chr5_2:55263951-55263970 None:intergenic 35.0%
ACTCTATTACTAGACAGAGT+GGG + chr5_2:55263951-55263970 Msa0776730:intron 35.0%
GACAAAGTTATACTGCAAAC+AGG + chr5_2:55264264-55264283 Msa0776730:intron 35.0%
CAAAGTTATACTGCAAACAG+GGG + chr5_2:55264266-55264285 Msa0776730:intron 35.0%
TTAAGTGTGCCGTCTATATA+TGG - chr5_2:55264457-55264476 None:intergenic 35.0%
TATGCATAAACATAAGGCAC+GGG - chr5_2:55264546-55264565 None:intergenic 35.0%
TTTGTTTCAGGAGTTACTAC+AGG + chr5_2:55264823-55264842 Msa0776730:intron 35.0%
GACACGCATATAATTTCATG+TGG - chr5_2:55264854-55264873 None:intergenic 35.0%
AAGTTGTTGTACTTTCTTCC+TGG - chr5_2:55264880-55264899 None:intergenic 35.0%
! AGGAAGAAAGTACAACAACT+TGG + chr5_2:55264879-55264898 Msa0776730:CDS 35.0%
ATGGTATTGTTAAGGACATG+CGG - chr5_2:55264953-55264972 None:intergenic 35.0%
GTCCTTAACAATACCATCAA+TGG + chr5_2:55264956-55264975 Msa0776730:CDS 35.0%
GTTTGAGTAACATCCATTGA+TGG - chr5_2:55264972-55264991 None:intergenic 35.0%
! ATATTCTGGGTGGATTTCAT+CGG + chr5_2:55265016-55265035 Msa0776730:CDS 35.0%
!!! GGCATACCAGGTATTTTTTA+TGG + chr5_2:55265038-55265057 Msa0776730:intron 35.0%
!!! GTTTGGGCTAGGTTTTATTT+TGG + chr5_2:55265268-55265287 Msa0776730:intron 35.0%
TTGTTTGCTTTATGAGTGGA+AGG + chr5_2:55265391-55265410 Msa0776730:intron 35.0%
! TTCCTTTTTCTTGGAAGAGA+TGG + chr5_2:55265444-55265463 Msa0776730:intron 35.0%
AACCATCTCTTCCAAGAAAA+AGG - chr5_2:55265449-55265468 None:intergenic 35.0%
TGATCTATGCTTTCAGAGTT+TGG + chr5_2:55265470-55265489 Msa0776730:intron 35.0%
! GTTTGAGAGTCTTTTGTGAT+GGG + chr5_2:55265564-55265583 Msa0776730:intron 35.0%
! TTTGAGAGTCTTTTGTGATG+GGG + chr5_2:55265565-55265584 Msa0776730:intron 35.0%
!! ACTTGCTGTTGTAAATTCTC+TGG + chr5_2:55265723-55265742 Msa0776730:intron 35.0%
!! CTTGCTGTTGTAAATTCTCT+GGG + chr5_2:55265724-55265743 Msa0776730:intron 35.0%
! AGAGTTTATGGATTTTCCTG+TGG - chr5_2:55265831-55265850 None:intergenic 35.0%
! CTGACAAAGGCGACAAATTT+TGG + chr5_2:55259984-55260003 Msa0776730:five_prime_UTR 40.0%
! ACAAAGGCGACAAATTTTGG+TGG + chr5_2:55259987-55260006 Msa0776730:five_prime_UTR 40.0%
GAGGTAGTTCATCACATGTT+GGG - chr5_2:55260030-55260049 None:intergenic 40.0%
! GACTTGCTCTAATGTTTGCT+GGG - chr5_2:55260069-55260088 None:intergenic 40.0%
! AGACTTGCTCTAATGTTTGC+TGG - chr5_2:55260070-55260089 None:intergenic 40.0%
GGATACATTGGAGAGCAATT+TGG + chr5_2:55260130-55260149 Msa0776730:five_prime_UTR 40.0%
! TGAATTAGGAACCCTTTTGG+GGG + chr5_2:55260244-55260263 Msa0776730:five_prime_UTR 40.0%
AAAATCTAGCACTAGAGTGG+TGG - chr5_2:55260346-55260365 None:intergenic 40.0%
! GAAGGATCAAAGGTGTATCA+AGG + chr5_2:55260390-55260409 Msa0776730:CDS 40.0%
CAACATGAGTTAACTCACGT+AGG - chr5_2:55261340-55261359 None:intergenic 40.0%
! ATGTATTTGTTACGAACGCG+AGG - chr5_2:55261390-55261409 None:intergenic 40.0%
TCGCGTTCGTAACAAATACA+TGG + chr5_2:55261389-55261408 Msa0776730:intron 40.0%
ATGCACAAGGATCAATCCAA+TGG + chr5_2:55261589-55261608 Msa0776730:intron 40.0%
GTAGCAGCTTTACAACCTTA+CGG + chr5_2:55261621-55261640 Msa0776730:intron 40.0%
TACCAACGTGAGTTAACTCA+AGG + chr5_2:55261752-55261771 Msa0776730:intron 40.0%
AACCTTGAGTTAACTCACGT+TGG - chr5_2:55261757-55261776 None:intergenic 40.0%
!!! AACTCAAGCTGAGGGTATTT+TGG + chr5_2:55261794-55261813 Msa0776730:intron 40.0%
GGAAAATGCAAGAGAAGACT+AGG - chr5_2:55261919-55261938 None:intergenic 40.0%
!! AAGGTAATGGAGGAACTGAA+GGG - chr5_2:55261944-55261963 None:intergenic 40.0%
!! AAAGGTAATGGAGGAACTGA+AGG - chr5_2:55261945-55261964 None:intergenic 40.0%
TTCAGTTCCTCCATTACCTT+TGG + chr5_2:55261944-55261963 Msa0776730:intron 40.0%
! TGCATAACCAAAGGTAATGG+AGG - chr5_2:55261954-55261973 None:intergenic 40.0%
CACTGCATAACCAAAGGTAA+TGG - chr5_2:55261957-55261976 None:intergenic 40.0%
AATGTGCACTGCATAACCAA+AGG - chr5_2:55261963-55261982 None:intergenic 40.0%
TTGTATGTGTTCCCAAACTG+GGG - chr5_2:55262144-55262163 None:intergenic 40.0%
GAACACATACAAAATGCCAC+CGG + chr5_2:55262152-55262171 Msa0776730:CDS 40.0%
TATGGAAGGAAAGAGATACC+TGG + chr5_2:55262198-55262217 Msa0776730:CDS 40.0%
GTTTAGTGTAAAACTGGAGG+AGG - chr5_2:55262320-55262339 None:intergenic 40.0%
TTCATTCAACCATCTCGAGA+GGG + chr5_2:55262363-55262382 Msa0776730:intron 40.0%
AACTTGGCAAGCATGATCTT+CGG + chr5_2:55262445-55262464 Msa0776730:intron 40.0%
! ATCTTCGGGAAATTAGCTTG+AGG + chr5_2:55262460-55262479 Msa0776730:intron 40.0%
GGTCTATATAGATGACATGG+TGG + chr5_2:55262519-55262538 Msa0776730:intron 40.0%
AAGATTTCTTGTAGGTCTCG+GGG - chr5_2:55262571-55262590 None:intergenic 40.0%
CAAGATTTCTTGTAGGTCTC+GGG - chr5_2:55262572-55262591 None:intergenic 40.0%
CCAAGATTTCTTGTAGGTCT+CGG - chr5_2:55262573-55262592 None:intergenic 40.0%
CGAGACCTACAAGAAATCTT+GGG + chr5_2:55262571-55262590 Msa0776730:intron 40.0%
!!! TTTTCTAGCTTGGACTCCAA+AGG - chr5_2:55262641-55262660 None:intergenic 40.0%
TATTCGTGAGCATCAAGCTA+AGG - chr5_2:55262666-55262685 None:intergenic 40.0%
! TTAGCTTGATGCTCACGAAT+AGG + chr5_2:55262665-55262684 Msa0776730:intron 40.0%
! AGGAGCCCATAAAGTGTTAA+AGG + chr5_2:55262730-55262749 Msa0776730:intron 40.0%
GCTACTCCTACGTTCTAATA+AGG + chr5_2:55262907-55262926 Msa0776730:intron 40.0%
AGTAGGGGATTACCTTGATT+TGG - chr5_2:55262933-55262952 None:intergenic 40.0%
CGTGCAAAGGAAATAATCGA+TGG - chr5_2:55262968-55262987 None:intergenic 40.0%
TTGGGTTCAACAAGGGTTAT+TGG - chr5_2:55263232-55263251 None:intergenic 40.0%
CCACATATTGGGTTCAACAA+GGG - chr5_2:55263239-55263258 None:intergenic 40.0%
TCCACATATTGGGTTCAACA+AGG - chr5_2:55263240-55263259 None:intergenic 40.0%
TTGAGTAGTACCAGAAGAAC+TGG + chr5_2:55263303-55263322 Msa0776730:intron 40.0%
CTTTACAATACCAAGAGACC+TGG + chr5_2:55263607-55263626 Msa0776730:intron 40.0%
! GTTATTGTTCCGTTGTTTCC+AGG - chr5_2:55263628-55263647 None:intergenic 40.0%
!!! CTTTGGTGCTTGGTTTTAGA+AGG - chr5_2:55263660-55263679 None:intergenic 40.0%
!! CTTCTAAAACCAAGCACCAA+AGG + chr5_2:55263658-55263677 Msa0776730:intron 40.0%
!! ACATACATTCCTTTGGTGCT+TGG - chr5_2:55263670-55263689 None:intergenic 40.0%
GGAAAACTGCATAAAAGAGG+AGG + chr5_2:55263824-55263843 Msa0776730:intron 40.0%
AGCAAAGAGAGTAACGTAGT+AGG + chr5_2:55263848-55263867 Msa0776730:intron 40.0%
CACTCTGTCTAGTAATAGAG+TGG - chr5_2:55263952-55263971 None:intergenic 40.0%
CACTCTATTACTAGACAGAG+TGG + chr5_2:55263950-55263969 Msa0776730:intron 40.0%
TATTCCCATGCATGAGCAAT+GGG + chr5_2:55263975-55263994 Msa0776730:intron 40.0%
GCAAATATTCATCGTCGAGA+GGG + chr5_2:55264379-55264398 Msa0776730:intron 40.0%
AATAAGGCTAGAATCTGGTG+TGG + chr5_2:55264581-55264600 Msa0776730:intron 40.0%
ATGTAGAGTGAAACATGGTG+TGG - chr5_2:55264613-55264632 None:intergenic 40.0%
ATGATCAGACCATAACACAC+TGG - chr5_2:55264677-55264696 None:intergenic 40.0%
! TTTGCTTCAGTCGATTTCAG+AGG - chr5_2:55264774-55264793 None:intergenic 40.0%
TAAAGTTGACGAAGTAGGCA+TGG - chr5_2:55264997-55265016 None:intergenic 40.0%
CGTCAACTTTATATTCTGGG+TGG + chr5_2:55265006-55265025 Msa0776730:CDS 40.0%
! TATTCTGGGTGGATTTCATC+GGG + chr5_2:55265017-55265036 Msa0776730:CDS 40.0%
ATACTCCCAAACAAAGGCTT+AGG + chr5_2:55265233-55265252 Msa0776730:intron 40.0%
TACTCCCAAACAAAGGCTTA+GGG + chr5_2:55265234-55265253 Msa0776730:intron 40.0%
AGATAGACCACATAGTTGCA+TGG - chr5_2:55265298-55265317 None:intergenic 40.0%
GGCAAAGAACCACTTTGAAT+TGG - chr5_2:55265354-55265373 None:intergenic 40.0%
AGGTGAGGCTAATTCTCTAT+TGG + chr5_2:55265411-55265430 Msa0776730:intron 40.0%
TCTATGCTTTCAGAGTTTGG+AGG + chr5_2:55265473-55265492 Msa0776730:intron 40.0%
CTATGCTTTCAGAGTTTGGA+GGG + chr5_2:55265474-55265493 Msa0776730:intron 40.0%
CCACTACCAAGTAAACAACA+GGG - chr5_2:55265542-55265561 None:intergenic 40.0%
ACCACTACCAAGTAAACAAC+AGG - chr5_2:55265543-55265562 None:intergenic 40.0%
!! TGTTGTTTACTTGGTAGTGG+TGG + chr5_2:55265542-55265561 Msa0776730:intron 40.0%
! GGTTTGAGAGTCTTTTGTGA+TGG + chr5_2:55265563-55265582 Msa0776730:intron 40.0%
!! GTTTACCTTTTGTTGGCTGT+AGG + chr5_2:55265674-55265693 Msa0776730:intron 40.0%
ATCCATAAACTCTATGCCAG+AGG + chr5_2:55265838-55265857 Msa0776730:CDS 40.0%
! GATTGGTCGAGATCTGACAA+AGG + chr5_2:55259971-55259990 Msa0776730:five_prime_UTR 45.0%
!! AAGGCGACAAATTTTGGTGG+CGG + chr5_2:55259990-55260009 Msa0776730:five_prime_UTR 45.0%
GGAGGTAGTTCATCACATGT+TGG - chr5_2:55260031-55260050 None:intergenic 45.0%
TGCTACGAGGACTCTTCTTT+AGG + chr5_2:55260167-55260186 Msa0776730:five_prime_UTR 45.0%
TTCCGGTCAAGAAATGATGG+CGG + chr5_2:55260366-55260385 Msa0776730:CDS 45.0%
ACGTGAGTTAACTCAAGCTG+AGG + chr5_2:55261785-55261804 Msa0776730:intron 45.0%
CGTGAGTTAACTCAAGCTGA+GGG + chr5_2:55261786-55261805 Msa0776730:intron 45.0%
!! AGGTAATGGAGGAACTGAAG+GGG - chr5_2:55261943-55261962 None:intergenic 45.0%
TACAAAATGCCACCGGAAGA+CGG + chr5_2:55262159-55262178 Msa0776730:CDS 45.0%
TTCCAGATAAACCCGTCTTC+CGG - chr5_2:55262174-55262193 None:intergenic 45.0%
! GCTTCAACCCGAGGTATTTA+TGG + chr5_2:55262220-55262239 Msa0776730:intron 45.0%
CTTCATTCAACCATCTCGAG+AGG + chr5_2:55262362-55262381 Msa0776730:intron 45.0%
TCTTGATTTCCCTCTCGAGA+TGG - chr5_2:55262375-55262394 None:intergenic 45.0%
ATCTCGAGAGGGAAATCAAG+AGG + chr5_2:55262374-55262393 Msa0776730:intron 45.0%
GAAGATCATGCTTGCCAAGT+TGG - chr5_2:55262446-55262465 None:intergenic 45.0%
ACTTGGCAAGCATGATCTTC+GGG + chr5_2:55262446-55262465 Msa0776730:intron 45.0%
! TCGGGAAATTAGCTTGAGGT+AGG + chr5_2:55262464-55262483 Msa0776730:intron 45.0%
! AATTAGCTTGAGGTAGGACG+TGG + chr5_2:55262470-55262489 Msa0776730:intron 45.0%
TGGTGAAGACCGATGAAGTA+TGG + chr5_2:55262539-55262558 Msa0776730:intron 45.0%
! GGGTTGACTCCATACTTCAT+CGG - chr5_2:55262551-55262570 None:intergenic 45.0%
CCGAGACCTACAAGAAATCT+TGG + chr5_2:55262570-55262589 Msa0776730:intron 45.0%
CGGAACCCAAGATTTCTTGT+AGG - chr5_2:55262579-55262598 None:intergenic 45.0%
CTTGATCTAACACCGTGCAA+AGG - chr5_2:55262981-55263000 None:intergenic 45.0%
GAGCTTAGTCGTAGTAACGA+CGG - chr5_2:55263096-55263115 None:intergenic 45.0%
CCCTTGTTGAACCCAATATG+TGG + chr5_2:55263236-55263255 Msa0776730:intron 45.0%
GAAACTTCGTCCAGTTCTTC+TGG - chr5_2:55263316-55263335 None:intergenic 45.0%
TCCAAGGGAACTAAACTGCA+AGG + chr5_2:55263567-55263586 Msa0776730:intron 45.0%
ACCAAGAGACCTGGAAACAA+CGG + chr5_2:55263616-55263635 Msa0776730:intron 45.0%
GTAATGTGTGGTAGTCACGT+TGG + chr5_2:55263879-55263898 Msa0776730:intron 45.0%
! TCACGTTGGTGGAAGATCTT+TGG + chr5_2:55263893-55263912 Msa0776730:intron 45.0%
CTATTCCCATGCATGAGCAA+TGG + chr5_2:55263974-55263993 Msa0776730:intron 45.0%
TTGACCCATTGCTCATGCAT+GGG - chr5_2:55263982-55264001 None:intergenic 45.0%
ATTGACCCATTGCTCATGCA+TGG - chr5_2:55263983-55264002 None:intergenic 45.0%
TTAGATTGAGGTAGAGCCAG+TGG + chr5_2:55264041-55264060 Msa0776730:intron 45.0%
AGTTATACTGCAAACAGGGG+CGG + chr5_2:55264269-55264288 Msa0776730:intron 45.0%
GGCAAATATTCATCGTCGAG+AGG + chr5_2:55264378-55264397 Msa0776730:intron 45.0%
AGGCACGGGAAGGAATAATA+TGG - chr5_2:55264532-55264551 None:intergenic 45.0%
CATAAACATAAGGCACGGGA+AGG - chr5_2:55264542-55264561 None:intergenic 45.0%
! GTTACATTTTGCAGCATGGG+CGG - chr5_2:55264636-55264655 None:intergenic 45.0%
! CCGGTTACATTTTGCAGCAT+GGG - chr5_2:55264639-55264658 None:intergenic 45.0%
CCCATGCTGCAAAATGTAAC+CGG + chr5_2:55264636-55264655 Msa0776730:intron 45.0%
CCATGCTGCAAAATGTAACC+GGG + chr5_2:55264637-55264656 Msa0776730:intron 45.0%
TGCAAAATGTAACCGGGAAG+AGG + chr5_2:55264643-55264662 Msa0776730:intron 45.0%
ATCAGACCATAACACACTGG+CGG - chr5_2:55264674-55264693 None:intergenic 45.0%
AATTATATGCGTGTCGAGCC+AGG + chr5_2:55264859-55264878 Msa0776730:CDS 45.0%
TATTGTTAAGGACATGCGGC+AGG - chr5_2:55264949-55264968 None:intergenic 45.0%
ACTCCCAAACAAAGGCTTAG+GGG + chr5_2:55265235-55265254 Msa0776730:intron 45.0%
! GAACCCCTAAGCCTTTGTTT+GGG - chr5_2:55265241-55265260 None:intergenic 45.0%
CAAACAAAGGCTTAGGGGTT+CGG + chr5_2:55265240-55265259 Msa0776730:intron 45.0%
TTAGGGGTTCGGAGATAGTT+TGG + chr5_2:55265251-55265270 Msa0776730:intron 45.0%
TAGGGGTTCGGAGATAGTTT+GGG + chr5_2:55265252-55265271 Msa0776730:intron 45.0%
! TGGTTTGCCATGCAACTATG+TGG + chr5_2:55265288-55265307 Msa0776730:intron 45.0%
TGCTTTATGAGTGGAAGGTG+AGG + chr5_2:55265396-55265415 Msa0776730:intron 45.0%
ACCACCAACTAGAAAGACCT+CGG - chr5_2:55265511-55265530 None:intergenic 45.0%
! CCCTGTTGTTTACTTGGTAG+TGG + chr5_2:55265539-55265558 Msa0776730:intron 45.0%
AACACAAACCCACACAAGGT+TGG - chr5_2:55265591-55265610 None:intergenic 45.0%
AACCTTGTGTGGGTTTGTGT+TGG + chr5_2:55265590-55265609 Msa0776730:intron 45.0%
ACCTTGTGTGGGTTTGTGTT+GGG + chr5_2:55265591-55265610 Msa0776730:intron 45.0%
AAACAACACTGCAACCTGAG+AGG - chr5_2:55265641-55265660 None:intergenic 45.0%
AAAGGCCTACAGCCAACAAA+AGG - chr5_2:55265682-55265701 None:intergenic 45.0%
!!! TAATATATAACATTTTTTTA+CGG + chr5_2:55264357-55264376 Msa0776730:intron 5.0%
CATGTGATGAACTACCTCCG+TGG + chr5_2:55260032-55260051 Msa0776730:five_prime_UTR 50.0%
!! GAACCCTTTTGGGGGATGAT+TGG + chr5_2:55260252-55260271 Msa0776730:exon 50.0%
GAGCCAATCATCCCCCAAAA+GGG - chr5_2:55260258-55260277 None:intergenic 50.0%
TCCGGTCAAGAAATGATGGC+GGG + chr5_2:55260367-55260386 Msa0776730:CDS 50.0%
!! TCAAGAAATGATGGCGGGGA+AGG + chr5_2:55260372-55260391 Msa0776730:CDS 50.0%
TACCTTTCTCCTGGTTGCGA+GGG - chr5_2:55260444-55260463 None:intergenic 50.0%
ATACCTTTCTCCTGGTTGCG+AGG - chr5_2:55260445-55260464 None:intergenic 50.0%
! TGTTACGAACGCGAGGTGTT+CGG - chr5_2:55261383-55261402 None:intergenic 50.0%
TAATGGAGGAACTGAAGGGG+AGG - chr5_2:55261940-55261959 None:intergenic 50.0%
TGTGTTCCCAAACTGGGGTT+CGG - chr5_2:55262139-55262158 None:intergenic 50.0%
ACAAAATGCCACCGGAAGAC+GGG + chr5_2:55262160-55262179 Msa0776730:CDS 50.0%
!! AAATACCTCGGGTTGAAGCC+AGG - chr5_2:55262219-55262238 None:intergenic 50.0%
TGCTATTCTCACAGCTCGAG+AGG + chr5_2:55262408-55262427 Msa0776730:intron 50.0%
GCTATTCTCACAGCTCGAGA+GGG + chr5_2:55262409-55262428 Msa0776730:intron 50.0%
GGGAAACATGTCGACCAACT+TGG + chr5_2:55262429-55262448 Msa0776730:intron 50.0%
! GCCTTGCAGTTTAGTTCCCT+TGG - chr5_2:55263571-55263590 None:intergenic 50.0%
! TCCGTTGTTTCCAGGTCTCT+TGG - chr5_2:55263620-55263639 None:intergenic 50.0%
ATGTGTGGTAGTCACGTTGG+TGG + chr5_2:55263882-55263901 Msa0776730:intron 50.0%
TCTTCCATGATGGTAGCCAC+TGG - chr5_2:55264060-55264079 None:intergenic 50.0%
GCGTAGTTGCTCTTCCATGA+TGG - chr5_2:55264070-55264089 None:intergenic 50.0%
CATGGAAGAGCAACTACGCA+TGG + chr5_2:55264071-55264090 Msa0776730:intron 50.0%
TAAGACACACCCACAACTCG+CGG + chr5_2:55264404-55264423 Msa0776730:intron 50.0%
!!! CCTTTTTTCCCGCGAGTTGT+GGG - chr5_2:55264416-55264435 None:intergenic 50.0%
AAACCACTCGGTCATGATGC+CGG + chr5_2:55264483-55264502 Msa0776730:intron 50.0%
GGCGGATGTAGAGTGAAACA+TGG - chr5_2:55264618-55264637 None:intergenic 50.0%
! CCCGGTTACATTTTGCAGCA+TGG - chr5_2:55264640-55264659 None:intergenic 50.0%
TCAGACCATAACACACTGGC+GGG - chr5_2:55264673-55264692 None:intergenic 50.0%
AGTTGACGAAGTAGGCATGG+TGG - chr5_2:55264994-55265013 None:intergenic 50.0%
TGGATTTCATCGGGCATACC+AGG + chr5_2:55265026-55265045 Msa0776730:CDS 50.0%
CGAACCCCTAAGCCTTTGTT+TGG - chr5_2:55265242-55265261 None:intergenic 50.0%
GTTCGGAGATAGTTTGGGCT+AGG + chr5_2:55265257-55265276 Msa0776730:intron 50.0%
! TCAGAGTTTGGAGGGTGCAT+AGG + chr5_2:55265482-55265501 Msa0776730:intron 50.0%
! GCTTCCGAGGTCTTTCTAGT+TGG + chr5_2:55265504-55265523 Msa0776730:intron 50.0%
!! TCCGAGGTCTTTCTAGTTGG+TGG + chr5_2:55265507-55265526 Msa0776730:intron 50.0%
! TCCTCGCCCTGTTGTTTACT+TGG + chr5_2:55265533-55265552 Msa0776730:intron 50.0%
ACCAAGTAAACAACAGGGCG+AGG - chr5_2:55265537-55265556 None:intergenic 50.0%
ACCCAACACAAACCCACACA+AGG - chr5_2:55265595-55265614 None:intergenic 50.0%
TTGTGTGGGTTTGTGTTGGG+TGG + chr5_2:55265594-55265613 Msa0776730:intron 50.0%
TGTGTGGGTTTGTGTTGGGT+GGG + chr5_2:55265595-55265614 Msa0776730:intron 50.0%
GGCCTCTGGCATAGAGTTTA+TGG - chr5_2:55265843-55265862 None:intergenic 50.0%
GCTGGGATCAGCAAACTCCA+CGG - chr5_2:55260052-55260071 None:intergenic 55.0%
GGAGCCAATCATCCCCCAAA+AGG - chr5_2:55260259-55260278 None:intergenic 55.0%
CCCCGCCATCATTTCTTGAC+CGG - chr5_2:55260371-55260390 None:intergenic 55.0%
! CCGGTCAAGAAATGATGGCG+GGG + chr5_2:55260368-55260387 Msa0776730:CDS 55.0%
!! TGATGGCGGGGAAGGATCAA+AGG + chr5_2:55260380-55260399 Msa0776730:CDS 55.0%
! GAAGTATCACCCTCGCAACC+AGG + chr5_2:55260432-55260451 Msa0776730:CDS 55.0%
ATCTCTCCCGAACCCCAGTT+TGG + chr5_2:55262129-55262148 Msa0776730:CDS 55.0%
TCTCTCCCGAACCCCAGTTT+GGG + chr5_2:55262130-55262149 Msa0776730:CDS 55.0%
GTGTTCCCAAACTGGGGTTC+GGG - chr5_2:55262138-55262157 None:intergenic 55.0%
CAGATAAACCCGTCTTCCGG+TGG - chr5_2:55262171-55262190 None:intergenic 55.0%
! CACCGGAAGACGGGTTTATC+TGG + chr5_2:55262169-55262188 Msa0776730:CDS 55.0%
AGATACCTGGCTTCAACCCG+AGG + chr5_2:55262211-55262230 Msa0776730:CDS 55.0%
AGAGGGAGCTTCGAACCTCA+AGG + chr5_2:55263270-55263289 Msa0776730:intron 55.0%
GAGGGAGCTTCGAACCTCAA+GGG + chr5_2:55263271-55263290 Msa0776730:intron 55.0%
AGAGCCAGTGGCTACCATCA+TGG + chr5_2:55264053-55264072 Msa0776730:intron 55.0%
AAGACACACCCACAACTCGC+GGG + chr5_2:55264405-55264424 Msa0776730:intron 55.0%
CCCACAACTCGCGGGAAAAA+AGG + chr5_2:55264413-55264432 Msa0776730:intron 55.0%
!!! GCCTTTTTTCCCGCGAGTTG+TGG - chr5_2:55264417-55264436 None:intergenic 55.0%
ATTCCGGCATCATGACCGAG+TGG - chr5_2:55264489-55264508 None:intergenic 55.0%
GATCTCCCGCCAGTGTGTTA+TGG + chr5_2:55264665-55264684 Msa0776730:intron 55.0%
TGATGGGGCCAACCTTGTGT+GGG + chr5_2:55265580-55265599 Msa0776730:intron 55.0%
GTGTGGGTTTGTGTTGGGTG+GGG + chr5_2:55265596-55265615 Msa0776730:intron 55.0%
ATCCGTCGGAGCAGCTAACA+TGG - chr5_2:55265864-55265883 None:intergenic 55.0%
ATGTTAGCTGCTCCGACGGA+TGG + chr5_2:55265863-55265882 Msa0776730:CDS 55.0%
GGGATCAGCAAACTCCACGG+AGG - chr5_2:55260049-55260068 None:intergenic 60.0%
! AGTGGTGGCGATCGTTCCCT+TGG - chr5_2:55260331-55260350 None:intergenic 60.0%
CACCCTCGCAACCAGGAGAA+AGG + chr5_2:55260439-55260458 Msa0776730:CDS 60.0%
GGAGCTTCGAACCTCAAGGG+AGG + chr5_2:55263274-55263293 Msa0776730:intron 60.0%
GCTTCGAACCTCAAGGGAGG+TGG + chr5_2:55263277-55263296 Msa0776730:intron 60.0%
CTCAAGCTCCACCTCCCTTG+AGG - chr5_2:55263288-55263307 None:intergenic 60.0%
! GTGATGGGGCCAACCTTGTG+TGG + chr5_2:55265579-55265598 Msa0776730:intron 60.0%
GGTTTGTGTTGGGTGGGGTC+CGG + chr5_2:55265601-55265620 Msa0776730:intron 60.0%
GTTTGTGTTGGGTGGGGTCC+GGG + chr5_2:55265602-55265621 Msa0776730:intron 60.0%
TTTGTGTTGGGTGGGGTCCG+GGG + chr5_2:55265603-55265622 Msa0776730:intron 60.0%
AGAGGCCAAACAAACGCCCC+CGG - chr5_2:55265623-55265642 None:intergenic 60.0%
GGGCGTTTGTTTGGCCTCTC+AGG + chr5_2:55265624-55265643 Msa0776730:intron 60.0%
GGAGCAGCTAACATGGCCTC+TGG - chr5_2:55265857-55265876 None:intergenic 60.0%
GGCCATGTTAGCTGCTCCGA+CGG + chr5_2:55265859-55265878 Msa0776730:CDS 60.0%
TTAGCTGCTCCGACGGATGG+TGG + chr5_2:55265866-55265885 Msa0776730:CDS 60.0%
TAGCTGCTCCGACGGATGGT+GGG + chr5_2:55265867-55265886 Msa0776730:CDS 60.0%
GGATGATGCCCACCATCCGT+CGG - chr5_2:55265878-55265897 None:intergenic 60.0%
CTGGCGGGAGATCCTCTTCC+CGG - chr5_2:55264658-55264677 None:intergenic 65.0%
! GGAGGGTGCATAGGCTTCCG+AGG + chr5_2:55265491-55265510 Msa0776730:intron 65.0%
TTGTGTTGGGTGGGGTCCGG+GGG + chr5_2:55265604-55265623 Msa0776730:intron 65.0%
!! GGGGTCCGGGGGCGTTTGTT+TGG + chr5_2:55265615-55265634 Msa0776730:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 55259934 55265901 55259934 ID=Msa0776730;Name=Msa0776730
chr5_2 mRNA 55259934 55265901 55259934 ID=Msa0776730-mRNA-1;Parent=Msa0776730;Name=Msa0776730-mRNA-1;_AED=0.27;_eAED=0.27;_QI=333|0.66|0.5|0.75|0|0.5|4|0|206
chr5_2 exon 55259934 55260460 55259934 ID=Msa0776730-mRNA-1:exon:16354;Parent=Msa0776730-mRNA-1
chr5_2 exon 55262092 55262232 55262092 ID=Msa0776730-mRNA-1:exon:16355;Parent=Msa0776730-mRNA-1
chr5_2 exon 55264833 55265047 55264833 ID=Msa0776730-mRNA-1:exon:16356;Parent=Msa0776730-mRNA-1
chr5_2 exon 55265834 55265901 55265834 ID=Msa0776730-mRNA-1:exon:16357;Parent=Msa0776730-mRNA-1
chr5_2 five_prime_UTR 55259934 55260266 55259934 ID=Msa0776730-mRNA-1:five_prime_utr;Parent=Msa0776730-mRNA-1
chr5_2 CDS 55260267 55260460 55260267 ID=Msa0776730-mRNA-1:cds;Parent=Msa0776730-mRNA-1
chr5_2 CDS 55262092 55262232 55262092 ID=Msa0776730-mRNA-1:cds;Parent=Msa0776730-mRNA-1
chr5_2 CDS 55264833 55265047 55264833 ID=Msa0776730-mRNA-1:cds;Parent=Msa0776730-mRNA-1
chr5_2 CDS 55265834 55265901 55265834 ID=Msa0776730-mRNA-1:cds;Parent=Msa0776730-mRNA-1
Gene Sequence

>Msa0776730

ATGATTGGCTCCAAAAACTCGCTGAGAAAGTTTGGGATTACCATACACAATATAAAAAAAACCAAGGGAACGATCGCCACCACTCTAGTGCTAGATTTTTTCCGGTCAAGAAATGATGGCGGGGAAGGATCAAAGGTGTATCAAGGAGATCATATGAAAGAAATAGAAGTATCACCCTCGCAACCAGGAGAAAGGAGAAAGAAATTGGAGACAGAGATAATAACAATAGTGATCTCTCCCGAACCCCAGTTTGGGAACACATACAAAATGCCACCGGAAGACGGGTTTATCTGGAAAGAATATGGAAGGAAAGAGATACCTGGCTTCAACCCGAGGAGTTACTACAGGTGCAACCACATGAAATTATATGCGTGTCGAGCCAGGAAGAAAGTACAACAACTTGGTGACCATCCAAACATATTTGAAGTTATATACAACGGTGGACATACCTGCCGCATGTCCTTAACAATACCATCAATGGATGTTACTCAAACCACCATGCCTACTTCGTCAACTTTATATTCTGGGTGGATTTCATCGGGCATACCAGGAAAATCCATAAACTCTATGCCAGAGGCCATGTTAGCTGCTCCGACGGATGGTGGGCATCATCCTATG
Protein sequence

>Msa0776730

MIGSKNSLRKFGITIHNIKKTKGTIATTLVLDFFRSRNDGGEGSKVYQGDHMKEIEVSPSQPGERRKKLETEIITIVISPEPQFGNTYKMPPEDGFIWKEYGRKEIPGFNPRSYYRCNHMKLYACRARKKVQQLGDHPNIFEVIYNGGHTCRMSLTIPSMDVTQTTMPTSSTLYSGWISSGIPGKSINSMPEAMLAAPTDGGHHPM