Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735070 | XP_003615973.1 | 96.419 | 363 | 13 | 0 | 1 | 363 | 1 | 363 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735070 | sp|B0ZB57|OMT3_HUMLU | 59.889 | 359 | 138 | 3 | 6 | 359 | 19 | 376 | 4.29e-161 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735070 | G7KFK0 | 96.419 | 363 | 13 | 0 | 1 | 363 | 1 | 363 | 0.0 | 729 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0735070 | Msa0777040 | 0.918950 | 8.269656e-87 | -8.615850e-47 |
| Msa0735070 | Msa0814140 | 0.902702 | 7.402213e-79 | -8.615850e-47 |
| Msa0735070 | Msa1150150 | 0.834152 | 3.535989e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735070 | MtrunA17_Chr5g0432301 | 96.419 | 363 | 13 | 0 | 1 | 363 | 1 | 363 | 0.0 | 729 |
| Msa0735070 | MtrunA17_Chr5g0432251 | 84.958 | 359 | 53 | 1 | 1 | 359 | 1 | 358 | 0.0 | 634 |
| Msa0735070 | MtrunA17_Chr5g0432241 | 83.008 | 359 | 61 | 0 | 1 | 359 | 1 | 359 | 0.0 | 622 |
| Msa0735070 | MtrunA17_Chr5g0432211 | 74.930 | 359 | 75 | 2 | 1 | 359 | 1 | 344 | 0.0 | 542 |
| Msa0735070 | MtrunA17_Chr5g0432261 | 71.031 | 359 | 71 | 3 | 1 | 359 | 1 | 326 | 0.0 | 515 |
| Msa0735070 | MtrunA17_Chr4g0040621 | 61.389 | 360 | 132 | 4 | 1 | 359 | 15 | 368 | 4.20e-160 | 453 |
| Msa0735070 | MtrunA17_Chr4g0014681 | 51.507 | 365 | 168 | 6 | 1 | 359 | 1 | 362 | 5.34e-120 | 351 |
| Msa0735070 | MtrunA17_Chr4g0014561 | 50.959 | 365 | 170 | 6 | 1 | 359 | 1 | 362 | 2.97e-118 | 347 |
| Msa0735070 | MtrunA17_Chr4g0046361 | 47.443 | 352 | 179 | 5 | 12 | 359 | 11 | 360 | 8.41e-115 | 338 |
| Msa0735070 | MtrunA17_Chr4g0014641 | 49.311 | 363 | 173 | 6 | 3 | 359 | 5 | 362 | 9.89e-113 | 332 |
| Msa0735070 | MtrunA17_Chr1g0188391 | 46.429 | 364 | 186 | 7 | 1 | 359 | 1 | 360 | 4.59e-112 | 331 |
| Msa0735070 | MtrunA17_Chr7g0223231 | 44.444 | 360 | 190 | 5 | 1 | 360 | 1 | 350 | 3.25e-108 | 320 |
| Msa0735070 | MtrunA17_Chr4g0046341 | 47.253 | 364 | 181 | 6 | 3 | 359 | 4 | 363 | 2.62e-107 | 318 |
| Msa0735070 | MtrunA17_Chr7g0219141 | 45.152 | 361 | 186 | 6 | 3 | 359 | 4 | 356 | 2.99e-107 | 318 |
| Msa0735070 | MtrunA17_Chr7g0223241 | 44.444 | 360 | 190 | 5 | 1 | 360 | 1 | 350 | 4.23e-107 | 318 |
| Msa0735070 | MtrunA17_Chr7g0219161 | 45.533 | 347 | 183 | 5 | 3 | 348 | 4 | 345 | 4.78e-105 | 313 |
| Msa0735070 | MtrunA17_Chr4g0046531 | 44.986 | 349 | 187 | 4 | 12 | 359 | 11 | 355 | 7.90e-99 | 308 |
| Msa0735070 | MtrunA17_Chr4g0046531 | 43.840 | 349 | 191 | 4 | 12 | 359 | 373 | 717 | 4.84e-96 | 301 |
| Msa0735070 | MtrunA17_Chr4g0014661 | 47.293 | 351 | 177 | 5 | 12 | 359 | 11 | 356 | 1.67e-98 | 296 |
| Msa0735070 | MtrunA17_Chr4g0014591 | 45.014 | 351 | 185 | 5 | 12 | 359 | 11 | 356 | 5.60e-92 | 279 |
| Msa0735070 | MtrunA17_Chr1g0188371 | 42.857 | 343 | 190 | 5 | 1 | 340 | 1 | 340 | 3.22e-91 | 278 |
| Msa0735070 | MtrunA17_Chr3g0121301 | 40.059 | 337 | 195 | 4 | 21 | 356 | 27 | 357 | 1.75e-81 | 253 |
| Msa0735070 | MtrunA17_Chr4g0021981 | 38.682 | 349 | 204 | 6 | 15 | 359 | 25 | 367 | 2.03e-78 | 245 |
| Msa0735070 | MtrunA17_Chr4g0022021 | 38.968 | 349 | 203 | 7 | 15 | 359 | 25 | 367 | 4.46e-74 | 234 |
| Msa0735070 | MtrunA17_Chr4g0014601 | 42.126 | 254 | 140 | 4 | 12 | 262 | 11 | 260 | 5.34e-66 | 209 |
| Msa0735070 | MtrunA17_Chr7g0276411 | 31.902 | 326 | 203 | 10 | 31 | 345 | 30 | 347 | 1.45e-50 | 172 |
| Msa0735070 | MtrunA17_Chr7g0276401 | 33.125 | 320 | 202 | 8 | 32 | 345 | 47 | 360 | 1.47e-49 | 170 |
| Msa0735070 | MtrunA17_Chr3g0128011 | 31.677 | 322 | 207 | 9 | 32 | 346 | 88 | 403 | 5.47e-49 | 170 |
| Msa0735070 | MtrunA17_Chr8g0345851 | 36.330 | 267 | 162 | 6 | 95 | 359 | 29 | 289 | 2.94e-48 | 164 |
| Msa0735070 | MtrunA17_Chr8g0367441 | 35.246 | 244 | 152 | 4 | 99 | 341 | 120 | 358 | 5.39e-47 | 164 |
| Msa0735070 | MtrunA17_Chr8g0367501 | 31.045 | 335 | 216 | 9 | 20 | 345 | 20 | 348 | 3.11e-46 | 162 |
| Msa0735070 | MtrunA17_Chr7g0219171 | 56.391 | 133 | 56 | 2 | 227 | 359 | 117 | 247 | 6.87e-46 | 157 |
| Msa0735070 | MtrunA17_Chr7g0219171 | 44.954 | 109 | 56 | 1 | 12 | 120 | 11 | 115 | 1.46e-21 | 92.4 |
| Msa0735070 | MtrunA17_Chr7g0218261 | 30.409 | 342 | 222 | 9 | 27 | 359 | 33 | 367 | 1.38e-45 | 160 |
| Msa0735070 | MtrunA17_Chr8g0367491 | 29.503 | 322 | 214 | 6 | 32 | 345 | 45 | 361 | 5.28e-45 | 158 |
| Msa0735070 | MtrunA17_Chr2g0307521 | 30.383 | 339 | 212 | 10 | 34 | 359 | 35 | 362 | 1.75e-44 | 157 |
| Msa0735070 | MtrunA17_Chr1g0200491 | 29.518 | 332 | 216 | 8 | 27 | 347 | 34 | 358 | 2.19e-44 | 157 |
| Msa0735070 | MtrunA17_Chr7g0218301 | 29.799 | 349 | 221 | 9 | 27 | 359 | 34 | 374 | 2.62e-44 | 156 |
| Msa0735070 | MtrunA17_Chr5g0448091 | 30.462 | 325 | 210 | 10 | 32 | 347 | 33 | 350 | 3.26e-44 | 156 |
| Msa0735070 | MtrunA17_Chr7g0218271 | 30.172 | 348 | 221 | 11 | 27 | 359 | 34 | 374 | 5.92e-44 | 155 |
| Msa0735070 | MtrunA17_Chr8g0367451 | 30.818 | 318 | 207 | 7 | 32 | 341 | 45 | 357 | 1.24e-42 | 152 |
| Msa0735070 | MtrunA17_Chr7g0218131 | 29.326 | 341 | 228 | 8 | 27 | 359 | 34 | 369 | 2.39e-42 | 151 |
| Msa0735070 | MtrunA17_Chr7g0218181 | 28.739 | 341 | 227 | 9 | 27 | 359 | 34 | 366 | 4.37e-42 | 150 |
| Msa0735070 | MtrunA17_Chr1g0163601 | 29.365 | 378 | 239 | 10 | 1 | 359 | 1 | 369 | 7.85e-42 | 150 |
| Msa0735070 | MtrunA17_Chr1g0163611 | 36.279 | 215 | 130 | 4 | 147 | 359 | 160 | 369 | 1.38e-40 | 146 |
| Msa0735070 | MtrunA17_Chr7g0218211 | 28.446 | 341 | 231 | 8 | 27 | 359 | 33 | 368 | 1.16e-39 | 144 |
| Msa0735070 | MtrunA17_Chr3g0085201 | 29.261 | 352 | 233 | 9 | 1 | 346 | 1 | 342 | 1.64e-39 | 143 |
| Msa0735070 | MtrunA17_Chr1g0163621 | 29.480 | 346 | 226 | 9 | 26 | 359 | 44 | 383 | 1.14e-38 | 142 |
| Msa0735070 | MtrunA17_Chr3g0085211 | 30.275 | 327 | 212 | 8 | 29 | 347 | 38 | 356 | 1.27e-37 | 139 |
| Msa0735070 | MtrunA17_Chr2g0314271 | 30.841 | 321 | 207 | 8 | 32 | 345 | 27 | 339 | 8.61e-37 | 136 |
| Msa0735070 | MtrunA17_Chr8g0367381 | 37.838 | 185 | 105 | 5 | 147 | 328 | 149 | 326 | 2.67e-36 | 134 |
| Msa0735070 | MtrunA17_Chr3g0130061 | 27.794 | 349 | 234 | 10 | 8 | 345 | 2 | 343 | 1.24e-32 | 125 |
| Msa0735070 | MtrunA17_Chr3g0130011 | 27.747 | 364 | 243 | 12 | 8 | 359 | 2 | 357 | 8.19e-31 | 120 |
| Msa0735070 | MtrunA17_Chr6g0482291 | 33.333 | 174 | 102 | 5 | 173 | 345 | 1 | 161 | 3.78e-22 | 92.0 |
| Msa0735070 | MtrunA17_Chr4g0014611 | 60.000 | 100 | 39 | 1 | 260 | 359 | 8 | 106 | 5.69e-22 | 89.7 |
| Msa0735070 | MtrunA17_Chr8g0367401 | 38.182 | 110 | 67 | 1 | 150 | 259 | 2 | 110 | 5.61e-21 | 88.2 |
| Msa0735070 | MtrunA17_Chr8g0367461 | 42.857 | 98 | 51 | 3 | 246 | 342 | 1 | 94 | 1.70e-18 | 80.1 |
| Msa0735070 | MtrunA17_Chr4g0014671 | 59.048 | 105 | 42 | 1 | 255 | 359 | 30 | 133 | 1.76e-17 | 78.2 |
| Msa0735070 | MtrunA17_Chr4g0011691 | 46.392 | 97 | 47 | 3 | 261 | 356 | 140 | 232 | 2.42e-17 | 80.5 |
| Msa0735070 | MtrunA17_Chr8g0367421 | 32.727 | 110 | 56 | 2 | 150 | 259 | 2 | 93 | 7.39e-15 | 70.5 |
| Msa0735070 | MtrunA17_Chr8g0367391 | 36.449 | 107 | 62 | 3 | 237 | 341 | 13 | 115 | 1.85e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735070 | AT4G35160.1 | 35.753 | 372 | 216 | 10 | 4 | 359 | 16 | 380 | 3.09e-65 | 212 |
| Msa0735070 | AT4G35150.1 | 33.425 | 365 | 191 | 9 | 4 | 359 | 2 | 323 | 7.13e-61 | 199 |
| Msa0735070 | AT5G54160.1 | 32.812 | 320 | 204 | 8 | 32 | 346 | 34 | 347 | 6.95e-52 | 176 |
| Msa0735070 | AT1G51990.2 | 32.219 | 329 | 204 | 8 | 44 | 359 | 39 | 361 | 3.22e-47 | 164 |
| Msa0735070 | AT1G51990.1 | 32.219 | 329 | 204 | 8 | 44 | 359 | 39 | 361 | 6.06e-47 | 163 |
| Msa0735070 | AT1G77520.1 | 30.607 | 379 | 224 | 11 | 2 | 359 | 20 | 380 | 1.26e-44 | 158 |
| Msa0735070 | AT1G33030.1 | 32.622 | 328 | 196 | 12 | 32 | 346 | 21 | 336 | 8.28e-41 | 147 |
| Msa0735070 | AT1G63140.2 | 32.172 | 373 | 226 | 12 | 2 | 359 | 20 | 380 | 1.18e-39 | 144 |
| Msa0735070 | AT1G63140.4 | 32.172 | 373 | 226 | 12 | 2 | 359 | 40 | 400 | 2.13e-39 | 144 |
| Msa0735070 | AT1G77530.1 | 31.903 | 373 | 227 | 12 | 2 | 359 | 20 | 380 | 4.57e-39 | 143 |
| Msa0735070 | AT3G53140.1 | 31.077 | 325 | 206 | 9 | 32 | 345 | 27 | 344 | 6.19e-39 | 142 |
| Msa0735070 | AT5G53810.1 | 31.232 | 349 | 208 | 11 | 32 | 359 | 40 | 377 | 1.35e-37 | 139 |
| Msa0735070 | AT1G21130.1 | 30.931 | 333 | 199 | 13 | 32 | 346 | 40 | 359 | 4.78e-35 | 132 |
| Msa0735070 | AT1G21110.1 | 30.091 | 329 | 199 | 13 | 32 | 342 | 40 | 355 | 3.71e-33 | 127 |
| Msa0735070 | AT1G21100.1 | 29.129 | 333 | 205 | 11 | 32 | 346 | 40 | 359 | 5.35e-33 | 126 |
| Msa0735070 | AT1G21120.1 | 30.030 | 333 | 202 | 13 | 32 | 346 | 40 | 359 | 1.03e-32 | 125 |
| Msa0735070 | AT1G62900.1 | 38.462 | 208 | 123 | 3 | 153 | 359 | 1 | 204 | 1.64e-32 | 121 |
| Msa0735070 | AT1G21120.2 | 30.030 | 333 | 202 | 13 | 32 | 346 | 88 | 407 | 2.13e-32 | 126 |
| Msa0735070 | AT5G37170.2 | 34.272 | 213 | 128 | 7 | 151 | 359 | 29 | 233 | 3.17e-32 | 121 |
| Msa0735070 | AT5G37170.1 | 34.272 | 213 | 128 | 7 | 151 | 359 | 129 | 333 | 7.62e-32 | 122 |
| Msa0735070 | AT1G76790.1 | 28.440 | 327 | 207 | 7 | 32 | 341 | 30 | 346 | 7.15e-31 | 120 |
| Msa0735070 | AT5G37170.3 | 35.079 | 191 | 114 | 6 | 173 | 359 | 1 | 185 | 2.22e-28 | 109 |
| Msa0735070 | AT1G63140.1 | 28.676 | 272 | 171 | 9 | 2 | 259 | 40 | 302 | 8.56e-18 | 83.6 |
| Msa0735070 | AT1G33030.2 | 28.870 | 239 | 152 | 8 | 32 | 259 | 21 | 252 | 3.10e-17 | 80.9 |
| Msa0735070 | AT1G33030.3 | 28.870 | 239 | 152 | 8 | 32 | 259 | 21 | 252 | 4.36e-17 | 80.9 |
| Msa0735070 | AT1G21130.2 | 26.749 | 243 | 155 | 9 | 32 | 259 | 40 | 274 | 2.76e-12 | 67.0 |
Find 70 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACATTCTCTTGATTATTT+TGG | 0.038368 | 5_1:-50063112 | None:intergenic |
| TCAATTAGTTTCCAATTTAT+TGG | 0.157383 | 5_1:+50063634 | Msa0735070:CDS |
| GTTAACATATACTCAATTTC+TGG | 0.174426 | 5_1:-50063386 | None:intergenic |
| GCACTTCTCAACCAATAAAT+TGG | 0.202449 | 5_1:-50063645 | None:intergenic |
| CAATTTAACCCATTCTTTCT+TGG | 0.222335 | 5_1:-50064988 | None:intergenic |
| ACAGCTCTTAACCCTAAAAT+TGG | 0.269525 | 5_1:-50065047 | None:intergenic |
| CGACACACGGGATGTTGTTA+TGG | 0.290673 | 5_1:+50063549 | Msa0735070:CDS |
| CCATGGTTGTGTATGATATC+TGG | 0.301298 | 5_1:-50063230 | None:intergenic |
| GATCTCCCACAAGTTGTTGA+TGG | 0.340943 | 5_1:+50063776 | Msa0735070:CDS |
| TGCAAAATCATTCCCACAAA+TGG | 0.347819 | 5_1:+50063739 | Msa0735070:CDS |
| TGCCACGGATTCATCATAAC+TGG | 0.358498 | 5_1:-50063479 | None:intergenic |
| GTTGATGTTGGAGGAGGAAC+AGG | 0.362777 | 5_1:+50063698 | Msa0735070:CDS |
| TGCATCTAGATTATTACTTA+AGG | 0.368848 | 5_1:+50063412 | Msa0735070:CDS |
| GTTCAATGAATTTGAGTCAT+TGG | 0.391032 | 5_1:+50063676 | Msa0735070:CDS |
| CAATTTATTTAATGAGTCAA+TGG | 0.392635 | 5_1:+50063601 | Msa0735070:CDS |
| GCTTTGAGCCTTGAGCAAAT+TGG | 0.420837 | 5_1:-50063138 | None:intergenic |
| AACAAAATTGCATCTGTTGG+CGG | 0.431252 | 5_1:-50063854 | None:intergenic |
| AAGAGAGAACCAAGAAAGAA+TGG | 0.431260 | 5_1:+50064979 | Msa0735070:CDS |
| TGGAGGAGGAACAGGGACTA+TGG | 0.434351 | 5_1:+50063706 | Msa0735070:CDS |
| AGAAATTGAGTATATGTTAA+CGG | 0.434868 | 5_1:+50063388 | Msa0735070:CDS |
| GACACACGGGATGTTGTTAT+GGG | 0.439136 | 5_1:+50063550 | Msa0735070:CDS |
| ACGAATGGTGTCACACTCAT+TGG | 0.441378 | 5_1:-50063440 | None:intergenic |
| CTTCTTTGATATGTTGATGA+TGG | 0.447651 | 5_1:+50064941 | Msa0735070:CDS |
| CTTAAATGTGTAGTTGACTT+AGG | 0.449531 | 5_1:+50063203 | Msa0735070:CDS |
| AGTGAGAAGCTAAGATATGT+TGG | 0.452323 | 5_1:+50063809 | Msa0735070:CDS |
| AACACAATGCACTCCATTTG+TGG | 0.453290 | 5_1:-50063752 | None:intergenic |
| TTTGAGTCATTGGTTGATGT+TGG | 0.460976 | 5_1:+50063686 | Msa0735070:CDS |
| CAAGTTGTTGATGGCTTGCA+AGG | 0.482348 | 5_1:+50063785 | Msa0735070:CDS |
| AAAGAAAGGTAAAGAAGGAA+AGG | 0.487837 | 5_1:+50064851 | Msa0735070:CDS |
| TTCAACAAAATTGCATCTGT+TGG | 0.490404 | 5_1:-50063857 | None:intergenic |
| ATGGTGTTAGATTGTGAGAA+GGG | 0.493895 | 5_1:+50064888 | Msa0735070:CDS |
| TATCTTGTAGTCACTAAAAC+CGG | 0.495764 | 5_1:-50065021 | None:intergenic |
| GAAGATATTAAAGAATTGTA+AGG | 0.505831 | 5_1:+50064818 | Msa0735070:CDS |
| TTGATGATGGTAACACTCAC+TGG | 0.510994 | 5_1:+50064954 | Msa0735070:CDS |
| ACACAATGCACTCCATTTGT+GGG | 0.515239 | 5_1:-50063751 | None:intergenic |
| TGTAGTGGATATTGCATGAC+TGG | 0.519677 | 5_1:+50064778 | Msa0735070:intron |
| TGCAAGCCATCAACAACTTG+TGG | 0.519974 | 5_1:-50063782 | None:intergenic |
| CATGGTGTTAGATTGTGAGA+AGG | 0.520696 | 5_1:+50064887 | Msa0735070:CDS |
| AGAGAGAACCAAGAAAGAAT+GGG | 0.522205 | 5_1:+50064980 | Msa0735070:CDS |
| GCAAGCCATCAACAACTTGT+GGG | 0.530699 | 5_1:-50063781 | None:intergenic |
| TGTTGCTTCCAATTTGCTCA+AGG | 0.535107 | 5_1:+50063130 | Msa0735070:CDS |
| GAAGGGAGACAATAATGAAT+CGG | 0.547439 | 5_1:+50064905 | Msa0735070:CDS |
| ATAGCAAAGAAAGGTAAAGA+AGG | 0.550930 | 5_1:+50064846 | Msa0735070:CDS |
| GAGTCATTGGTTGATGTTGG+AGG | 0.554899 | 5_1:+50063689 | Msa0735070:CDS |
| CGTGGCATCAATTCTCTATG+TGG | 0.558108 | 5_1:+50063495 | Msa0735070:CDS |
| CGCATCAAGCGATAGATGCA+AGG | 0.562811 | 5_1:-50063311 | None:intergenic |
| AGAAGCTAAGATATGTTGGT+GGG | 0.573478 | 5_1:+50063813 | Msa0735070:CDS |
| TCGAGCATCGCGTACACGAA+TGG | 0.574656 | 5_1:-50063455 | None:intergenic |
| ATGCGAATCATGACTCACTC+TGG | 0.576549 | 5_1:+50063329 | Msa0735070:CDS |
| AAGGAGGCAATAGCAAAGAA+AGG | 0.578531 | 5_1:+50064837 | Msa0735070:CDS |
| GTAGTCACTAAAACCGGCCG+AGG | 0.580559 | 5_1:-50065015 | None:intergenic |
| GTTAAATTGATATCCTCGGC+CGG | 0.582802 | 5_1:+50065002 | Msa0735070:CDS |
| ATGGGTTAAATTGATATCCT+CGG | 0.589713 | 5_1:+50064998 | Msa0735070:CDS |
| TTTATTGGTTGAGAAGTGCA+AGG | 0.591471 | 5_1:+50063649 | Msa0735070:CDS |
| TTATTGGTTGAGAAGTGCAA+GGG | 0.594326 | 5_1:+50063650 | Msa0735070:CDS |
| TCAAGGCTCAAAGCCACGTA+TGG | 0.597244 | 5_1:+50063147 | Msa0735070:CDS |
| GATATTAAAGAATTGTAAGG+AGG | 0.600210 | 5_1:+50064821 | Msa0735070:CDS |
| CACATAGAGAATTGATGCCA+CGG | 0.606841 | 5_1:-50063494 | None:intergenic |
| GCCACGGATTCATCATAACT+GGG | 0.617476 | 5_1:-50063478 | None:intergenic |
| GAGAAGCTAAGATATGTTGG+TGG | 0.617907 | 5_1:+50063812 | Msa0735070:CDS |
| ACATCATTTGAAACGACACA+CGG | 0.621968 | 5_1:+50063536 | Msa0735070:CDS |
| TGAAAATGTGATTCCATACG+TGG | 0.623179 | 5_1:-50063160 | None:intergenic |
| TCATTGGTTGATGTTGGAGG+AGG | 0.629765 | 5_1:+50063692 | Msa0735070:CDS |
| CTTCTCTCAACAAAATGTTG+CGG | 0.629768 | 5_1:+50063355 | Msa0735070:CDS |
| CCAGATATCATACACAACCA+TGG | 0.643900 | 5_1:+50063230 | Msa0735070:CDS |
| GAAGCTAAGATATGTTGGTG+GGG | 0.652324 | 5_1:+50063814 | Msa0735070:CDS |
| TTGATGTTGGAGGAGGAACA+GGG | 0.660754 | 5_1:+50063699 | Msa0735070:CDS |
| ACCCAGTTATGATGAATCCG+TGG | 0.665584 | 5_1:+50063477 | Msa0735070:CDS |
| CATCATTTGAAACGACACAC+GGG | 0.671406 | 5_1:+50063537 | Msa0735070:CDS |
| AAAGGTAGTTATCATAGACA+TGG | 0.689933 | 5_1:+50064869 | Msa0735070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCAACTAATTTATTTTTT+AGG | + | chr5_1:50064025-50064044 | Msa0735070:intron | 10.0% |
| !!! | ATCAACTAATTTATTTTTTA+GGG | + | chr5_1:50064026-50064045 | Msa0735070:intron | 10.0% |
| !!! | AATCAACTAATTTATTTTTT+AGG | + | chr5_1:50064025-50064044 | Msa0735070:intron | 10.0% |
| !!! | ATCAACTAATTTATTTTTTA+GGG | + | chr5_1:50064026-50064045 | Msa0735070:intron | 10.0% |
| !!! | TCAACTAATTTATTTTTTAG+GGG | + | chr5_1:50064027-50064046 | Msa0735070:intron | 15.0% |
| !! | TATTAGAAAGAAAATGTTAT+TGG | + | chr5_1:50064338-50064357 | Msa0735070:intron | 15.0% |
| !!! | TAGAGATAAACTTTTTTAAT+AGG | - | chr5_1:50064543-50064562 | None:intergenic | 15.0% |
| !!! | TCAACTAATTTATTTTTTAG+GGG | + | chr5_1:50064027-50064046 | Msa0735070:intron | 15.0% |
| !! | TATTAGAAAGAAAATGTTAT+TGG | + | chr5_1:50064338-50064357 | Msa0735070:intron | 15.0% |
| !!! | TAGAGATAAACTTTTTTAAT+AGG | - | chr5_1:50064543-50064562 | None:intergenic | 15.0% |
| !!! | AACATTCTCTTGATTATTTT+GGG | - | chr5_1:50063114-50063133 | None:intergenic | 20.0% |
| !! | AGAAATTGAGTATATGTTAA+CGG | + | chr5_1:50063388-50063407 | Msa0735070:CDS | 20.0% |
| !! | CAATTTATTTAATGAGTCAA+TGG | + | chr5_1:50063601-50063620 | Msa0735070:CDS | 20.0% |
| !!! | TCAATTAGTTTCCAATTTAT+TGG | + | chr5_1:50063634-50063653 | Msa0735070:CDS | 20.0% |
| !!! | TAGTTGATTGTTTTCTTATA+TGG | - | chr5_1:50064014-50064033 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTTGTAATGGGT+AGG | + | chr5_1:50064074-50064093 | Msa0735070:intron | 20.0% |
| !!! | ATTCACACAGTTATTTTTAT+AGG | + | chr5_1:50064105-50064124 | Msa0735070:intron | 20.0% |
| !! | ACTTCTTACATAAAAAATGT+TGG | - | chr5_1:50064193-50064212 | None:intergenic | 20.0% |
| !!! | AATATTTTTTTGCCACATTT+TGG | + | chr5_1:50064647-50064666 | Msa0735070:intron | 20.0% |
| !! | TAAAATAAGGAGAATATGAA+GGG | - | chr5_1:50064686-50064705 | None:intergenic | 20.0% |
| !! | ATAAAATAAGGAGAATATGA+AGG | - | chr5_1:50064687-50064706 | None:intergenic | 20.0% |
| !! | ACTGAAATGAAGATAAAATA+AGG | - | chr5_1:50064699-50064718 | None:intergenic | 20.0% |
| !! | GAAGATATTAAAGAATTGTA+AGG | + | chr5_1:50064818-50064837 | Msa0735070:CDS | 20.0% |
| !!! | AACATTCTCTTGATTATTTT+GGG | - | chr5_1:50063114-50063133 | None:intergenic | 20.0% |
| !! | AGAAATTGAGTATATGTTAA+CGG | + | chr5_1:50063388-50063407 | Msa0735070:CDS | 20.0% |
| !! | CAATTTATTTAATGAGTCAA+TGG | + | chr5_1:50063601-50063620 | Msa0735070:CDS | 20.0% |
| !!! | TCAATTAGTTTCCAATTTAT+TGG | + | chr5_1:50063634-50063653 | Msa0735070:CDS | 20.0% |
| !!! | TAGTTGATTGTTTTCTTATA+TGG | - | chr5_1:50064014-50064033 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTTGTAATGGGT+AGG | + | chr5_1:50064074-50064093 | Msa0735070:intron | 20.0% |
| !!! | ATTCACACAGTTATTTTTAT+AGG | + | chr5_1:50064105-50064124 | Msa0735070:intron | 20.0% |
| !! | ACTTCTTACATAAAAAATGT+TGG | - | chr5_1:50064193-50064212 | None:intergenic | 20.0% |
| !!! | AATATTTTTTTGCCACATTT+TGG | + | chr5_1:50064647-50064666 | Msa0735070:intron | 20.0% |
| !! | TAAAATAAGGAGAATATGAA+GGG | - | chr5_1:50064686-50064705 | None:intergenic | 20.0% |
| !! | ATAAAATAAGGAGAATATGA+AGG | - | chr5_1:50064687-50064706 | None:intergenic | 20.0% |
| !! | ACTGAAATGAAGATAAAATA+AGG | - | chr5_1:50064699-50064718 | None:intergenic | 20.0% |
| !! | GAAGATATTAAAGAATTGTA+AGG | + | chr5_1:50064818-50064837 | Msa0735070:CDS | 20.0% |
| !! | CAACATTCTCTTGATTATTT+TGG | - | chr5_1:50063115-50063134 | None:intergenic | 25.0% |
| ! | GTTAACATATACTCAATTTC+TGG | - | chr5_1:50063389-50063408 | None:intergenic | 25.0% |
| ! | TGCATCTAGATTATTACTTA+AGG | + | chr5_1:50063412-50063431 | Msa0735070:CDS | 25.0% |
| !!! | CTAAAGTATTTTCTATGGAT+CGG | - | chr5_1:50063906-50063925 | None:intergenic | 25.0% |
| !!! | GAACACTAAAGTATTTTCTA+TGG | - | chr5_1:50063911-50063930 | None:intergenic | 25.0% |
| !! | TGTGTTTAATTTCTTATAGC+AGG | + | chr5_1:50064131-50064150 | Msa0735070:intron | 25.0% |
| ! | ATAAAATGATAAGACACACA+TGG | + | chr5_1:50064287-50064306 | Msa0735070:intron | 25.0% |
| ! | TAAAATGATAAGACACACAT+GGG | + | chr5_1:50064288-50064307 | Msa0735070:intron | 25.0% |
| !! | TGCTTTTGTATACATAGTTT+AGG | + | chr5_1:50064621-50064640 | Msa0735070:intron | 25.0% |
| !! | GCTTTTGTATACATAGTTTA+GGG | + | chr5_1:50064622-50064641 | Msa0735070:intron | 25.0% |
| ! | AAGTCTTAATGAAATTGTAG+TGG | + | chr5_1:50064763-50064782 | Msa0735070:intron | 25.0% |
| ! | GATATTAAAGAATTGTAAGG+AGG | + | chr5_1:50064821-50064840 | Msa0735070:CDS | 25.0% |
| !! | TACAAGATAACTCCAATTTT+AGG | + | chr5_1:50065035-50065054 | Msa0735070:CDS | 25.0% |
| !! | ACAAGATAACTCCAATTTTA+GGG | + | chr5_1:50065036-50065055 | Msa0735070:CDS | 25.0% |
| !! | CAACATTCTCTTGATTATTT+TGG | - | chr5_1:50063115-50063134 | None:intergenic | 25.0% |
| ! | GTTAACATATACTCAATTTC+TGG | - | chr5_1:50063389-50063408 | None:intergenic | 25.0% |
| ! | TGCATCTAGATTATTACTTA+AGG | + | chr5_1:50063412-50063431 | Msa0735070:CDS | 25.0% |
| !!! | CTAAAGTATTTTCTATGGAT+CGG | - | chr5_1:50063906-50063925 | None:intergenic | 25.0% |
| !!! | GAACACTAAAGTATTTTCTA+TGG | - | chr5_1:50063911-50063930 | None:intergenic | 25.0% |
| !! | TGTGTTTAATTTCTTATAGC+AGG | + | chr5_1:50064131-50064150 | Msa0735070:intron | 25.0% |
| ! | ATAAAATGATAAGACACACA+TGG | + | chr5_1:50064287-50064306 | Msa0735070:intron | 25.0% |
| ! | TAAAATGATAAGACACACAT+GGG | + | chr5_1:50064288-50064307 | Msa0735070:intron | 25.0% |
| !! | TGCTTTTGTATACATAGTTT+AGG | + | chr5_1:50064621-50064640 | Msa0735070:intron | 25.0% |
| !! | GCTTTTGTATACATAGTTTA+GGG | + | chr5_1:50064622-50064641 | Msa0735070:intron | 25.0% |
| ! | AAGTCTTAATGAAATTGTAG+TGG | + | chr5_1:50064763-50064782 | Msa0735070:intron | 25.0% |
| ! | GATATTAAAGAATTGTAAGG+AGG | + | chr5_1:50064821-50064840 | Msa0735070:CDS | 25.0% |
| !! | TACAAGATAACTCCAATTTT+AGG | + | chr5_1:50065035-50065054 | Msa0735070:CDS | 25.0% |
| !! | ACAAGATAACTCCAATTTTA+GGG | + | chr5_1:50065036-50065055 | Msa0735070:CDS | 25.0% |
| ! | CTTAAATGTGTAGTTGACTT+AGG | + | chr5_1:50063203-50063222 | Msa0735070:CDS | 30.0% |
| GTTCAATGAATTTGAGTCAT+TGG | + | chr5_1:50063676-50063695 | Msa0735070:CDS | 30.0% | |
| TTCAACAAAATTGCATCTGT+TGG | - | chr5_1:50063860-50063879 | None:intergenic | 30.0% | |
| ! | AACAGATGCAATTTTGTTGA+AGG | + | chr5_1:50063859-50063878 | Msa0735070:CDS | 30.0% |
| TTTAACACTCACTCTCTTAT+AGG | + | chr5_1:50064230-50064249 | Msa0735070:intron | 30.0% | |
| ! | GTGTGTCTTATCATTTTATG+TGG | - | chr5_1:50064286-50064305 | None:intergenic | 30.0% |
| !!! | CTTTTTTAATAGGACAAGAG+TGG | - | chr5_1:50064533-50064552 | None:intergenic | 30.0% |
| !! | CACATTTTGGTACTAATGAT+CGG | + | chr5_1:50064660-50064679 | Msa0735070:intron | 30.0% |
| ATAGCAAAGAAAGGTAAAGA+AGG | + | chr5_1:50064846-50064865 | Msa0735070:CDS | 30.0% | |
| AAAGAAAGGTAAAGAAGGAA+AGG | + | chr5_1:50064851-50064870 | Msa0735070:CDS | 30.0% | |
| AAAGGTAGTTATCATAGACA+TGG | + | chr5_1:50064869-50064888 | Msa0735070:CDS | 30.0% | |
| ! | CTTCTTTGATATGTTGATGA+TGG | + | chr5_1:50064941-50064960 | Msa0735070:CDS | 30.0% |
| CAATTTAACCCATTCTTTCT+TGG | - | chr5_1:50064991-50065010 | None:intergenic | 30.0% | |
| ! | ATGGGTTAAATTGATATCCT+CGG | + | chr5_1:50064998-50065017 | Msa0735070:CDS | 30.0% |
| TATCTTGTAGTCACTAAAAC+CGG | - | chr5_1:50065024-50065043 | None:intergenic | 30.0% | |
| ! | CTTAAATGTGTAGTTGACTT+AGG | + | chr5_1:50063203-50063222 | Msa0735070:CDS | 30.0% |
| GTTCAATGAATTTGAGTCAT+TGG | + | chr5_1:50063676-50063695 | Msa0735070:CDS | 30.0% | |
| TTCAACAAAATTGCATCTGT+TGG | - | chr5_1:50063860-50063879 | None:intergenic | 30.0% | |
| ! | AACAGATGCAATTTTGTTGA+AGG | + | chr5_1:50063859-50063878 | Msa0735070:CDS | 30.0% |
| TTTAACACTCACTCTCTTAT+AGG | + | chr5_1:50064230-50064249 | Msa0735070:intron | 30.0% | |
| ! | GTGTGTCTTATCATTTTATG+TGG | - | chr5_1:50064286-50064305 | None:intergenic | 30.0% |
| !!! | CTTTTTTAATAGGACAAGAG+TGG | - | chr5_1:50064533-50064552 | None:intergenic | 30.0% |
| !! | CACATTTTGGTACTAATGAT+CGG | + | chr5_1:50064660-50064679 | Msa0735070:intron | 30.0% |
| ATAGCAAAGAAAGGTAAAGA+AGG | + | chr5_1:50064846-50064865 | Msa0735070:CDS | 30.0% | |
| AAAGAAAGGTAAAGAAGGAA+AGG | + | chr5_1:50064851-50064870 | Msa0735070:CDS | 30.0% | |
| AAAGGTAGTTATCATAGACA+TGG | + | chr5_1:50064869-50064888 | Msa0735070:CDS | 30.0% | |
| ! | CTTCTTTGATATGTTGATGA+TGG | + | chr5_1:50064941-50064960 | Msa0735070:CDS | 30.0% |
| CAATTTAACCCATTCTTTCT+TGG | - | chr5_1:50064991-50065010 | None:intergenic | 30.0% | |
| ! | ATGGGTTAAATTGATATCCT+CGG | + | chr5_1:50064998-50065017 | Msa0735070:CDS | 30.0% |
| TATCTTGTAGTCACTAAAAC+CGG | - | chr5_1:50065024-50065043 | None:intergenic | 30.0% | |
| TGAAAATGTGATTCCATACG+TGG | - | chr5_1:50063163-50063182 | None:intergenic | 35.0% | |
| !!! | GAAGAAATGAGTTTTGAGAG+TGG | - | chr5_1:50063266-50063285 | None:intergenic | 35.0% |
| !!! | AGATGCAAGGCTTTTTTGAA+GGG | - | chr5_1:50063301-50063320 | None:intergenic | 35.0% |
| !!! | TAGATGCAAGGCTTTTTTGA+AGG | - | chr5_1:50063302-50063321 | None:intergenic | 35.0% |
| CTTCTCTCAACAAAATGTTG+CGG | + | chr5_1:50063355-50063374 | Msa0735070:CDS | 35.0% | |
| ! | ACATCATTTGAAACGACACA+CGG | + | chr5_1:50063536-50063555 | Msa0735070:CDS | 35.0% |
| GCACTTCTCAACCAATAAAT+TGG | - | chr5_1:50063648-50063667 | None:intergenic | 35.0% | |
| ! | TTTATTGGTTGAGAAGTGCA+AGG | + | chr5_1:50063649-50063668 | Msa0735070:CDS | 35.0% |
| ! | TTATTGGTTGAGAAGTGCAA+GGG | + | chr5_1:50063650-50063669 | Msa0735070:CDS | 35.0% |
| ! | TTTGAGTCATTGGTTGATGT+TGG | + | chr5_1:50063686-50063705 | Msa0735070:CDS | 35.0% |
| TGCAAAATCATTCCCACAAA+TGG | + | chr5_1:50063739-50063758 | Msa0735070:CDS | 35.0% | |
| AGTGAGAAGCTAAGATATGT+TGG | + | chr5_1:50063809-50063828 | Msa0735070:CDS | 35.0% | |
| AGAAGCTAAGATATGTTGGT+GGG | + | chr5_1:50063813-50063832 | Msa0735070:CDS | 35.0% | |
| AACAAAATTGCATCTGTTGG+CGG | - | chr5_1:50063857-50063876 | None:intergenic | 35.0% | |
| TAAAGCATGTTATCACGAGA+TGG | + | chr5_1:50063949-50063968 | Msa0735070:intron | 35.0% | |
| ! | TTTTAATAGGACAAGAGTGG+AGG | - | chr5_1:50064530-50064549 | None:intergenic | 35.0% |
| CGATCATTAGTACCAAAATG+TGG | - | chr5_1:50064662-50064681 | None:intergenic | 35.0% | |
| ! | ATGGTGTTAGATTGTGAGAA+GGG | + | chr5_1:50064888-50064907 | Msa0735070:CDS | 35.0% |
| GAAGGGAGACAATAATGAAT+CGG | + | chr5_1:50064905-50064924 | Msa0735070:CDS | 35.0% | |
| AAGAGAGAACCAAGAAAGAA+TGG | + | chr5_1:50064979-50064998 | Msa0735070:CDS | 35.0% | |
| AGAGAGAACCAAGAAAGAAT+GGG | + | chr5_1:50064980-50064999 | Msa0735070:CDS | 35.0% | |
| ACAGCTCTTAACCCTAAAAT+TGG | - | chr5_1:50065050-50065069 | None:intergenic | 35.0% | |
| TGAAAATGTGATTCCATACG+TGG | - | chr5_1:50063163-50063182 | None:intergenic | 35.0% | |
| !!! | GAAGAAATGAGTTTTGAGAG+TGG | - | chr5_1:50063266-50063285 | None:intergenic | 35.0% |
| !!! | AGATGCAAGGCTTTTTTGAA+GGG | - | chr5_1:50063301-50063320 | None:intergenic | 35.0% |
| !!! | TAGATGCAAGGCTTTTTTGA+AGG | - | chr5_1:50063302-50063321 | None:intergenic | 35.0% |
| CTTCTCTCAACAAAATGTTG+CGG | + | chr5_1:50063355-50063374 | Msa0735070:CDS | 35.0% | |
| ! | ACATCATTTGAAACGACACA+CGG | + | chr5_1:50063536-50063555 | Msa0735070:CDS | 35.0% |
| GCACTTCTCAACCAATAAAT+TGG | - | chr5_1:50063648-50063667 | None:intergenic | 35.0% | |
| ! | TTTATTGGTTGAGAAGTGCA+AGG | + | chr5_1:50063649-50063668 | Msa0735070:CDS | 35.0% |
| ! | TTATTGGTTGAGAAGTGCAA+GGG | + | chr5_1:50063650-50063669 | Msa0735070:CDS | 35.0% |
| ! | TTTGAGTCATTGGTTGATGT+TGG | + | chr5_1:50063686-50063705 | Msa0735070:CDS | 35.0% |
| TGCAAAATCATTCCCACAAA+TGG | + | chr5_1:50063739-50063758 | Msa0735070:CDS | 35.0% | |
| AGTGAGAAGCTAAGATATGT+TGG | + | chr5_1:50063809-50063828 | Msa0735070:CDS | 35.0% | |
| AGAAGCTAAGATATGTTGGT+GGG | + | chr5_1:50063813-50063832 | Msa0735070:CDS | 35.0% | |
| AACAAAATTGCATCTGTTGG+CGG | - | chr5_1:50063857-50063876 | None:intergenic | 35.0% | |
| TAAAGCATGTTATCACGAGA+TGG | + | chr5_1:50063949-50063968 | Msa0735070:intron | 35.0% | |
| ! | TTTTAATAGGACAAGAGTGG+AGG | - | chr5_1:50064530-50064549 | None:intergenic | 35.0% |
| CGATCATTAGTACCAAAATG+TGG | - | chr5_1:50064662-50064681 | None:intergenic | 35.0% | |
| ! | ATGGTGTTAGATTGTGAGAA+GGG | + | chr5_1:50064888-50064907 | Msa0735070:CDS | 35.0% |
| GAAGGGAGACAATAATGAAT+CGG | + | chr5_1:50064905-50064924 | Msa0735070:CDS | 35.0% | |
| AAGAGAGAACCAAGAAAGAA+TGG | + | chr5_1:50064979-50064998 | Msa0735070:CDS | 35.0% | |
| AGAGAGAACCAAGAAAGAAT+GGG | + | chr5_1:50064980-50064999 | Msa0735070:CDS | 35.0% | |
| ACAGCTCTTAACCCTAAAAT+TGG | - | chr5_1:50065050-50065069 | None:intergenic | 35.0% | |
| ! | TGTTGCTTCCAATTTGCTCA+AGG | + | chr5_1:50063130-50063149 | Msa0735070:CDS | 40.0% |
| CCATGGTTGTGTATGATATC+TGG | - | chr5_1:50063233-50063252 | None:intergenic | 40.0% | |
| CCAGATATCATACACAACCA+TGG | + | chr5_1:50063230-50063249 | Msa0735070:CDS | 40.0% | |
| !!! | AATGAGTTTTGAGAGTGGCA+TGG | - | chr5_1:50063261-50063280 | None:intergenic | 40.0% |
| CACATAGAGAATTGATGCCA+CGG | - | chr5_1:50063497-50063516 | None:intergenic | 40.0% | |
| ! | CATCATTTGAAACGACACAC+GGG | + | chr5_1:50063537-50063556 | Msa0735070:CDS | 40.0% |
| ACACAATGCACTCCATTTGT+GGG | - | chr5_1:50063754-50063773 | None:intergenic | 40.0% | |
| AACACAATGCACTCCATTTG+TGG | - | chr5_1:50063755-50063774 | None:intergenic | 40.0% | |
| GAGAAGCTAAGATATGTTGG+TGG | + | chr5_1:50063812-50063831 | Msa0735070:CDS | 40.0% | |
| GAAGCTAAGATATGTTGGTG+GGG | + | chr5_1:50063814-50063833 | Msa0735070:CDS | 40.0% | |
| CATGTTATCACGAGATGGTA+AGG | + | chr5_1:50063954-50063973 | Msa0735070:intron | 40.0% | |
| CACGAGATGGTAAGGTTTAA+TGG | + | chr5_1:50063962-50063981 | Msa0735070:intron | 40.0% | |
| AACGAGTGGTACAATGGTAT+GGG | - | chr5_1:50064381-50064400 | None:intergenic | 40.0% | |
| AAACGAGTGGTACAATGGTA+TGG | - | chr5_1:50064382-50064401 | None:intergenic | 40.0% | |
| TACCATTGTACCACTCGTTT+AGG | + | chr5_1:50064382-50064401 | Msa0735070:intron | 40.0% | |
| !! | ACCACTCGTTTAGGAGTATT+AGG | + | chr5_1:50064391-50064410 | Msa0735070:intron | 40.0% |
| TCCTAATACTCCTAAACGAG+TGG | - | chr5_1:50064395-50064414 | None:intergenic | 40.0% | |
| TAAAGGGAGAACGCTAAGAT+AGG | - | chr5_1:50064435-50064454 | None:intergenic | 40.0% | |
| TCTTAGCGTTCTCCCTTTAT+TGG | + | chr5_1:50064436-50064455 | Msa0735070:intron | 40.0% | |
| !! | TGTAGTGGATATTGCATGAC+TGG | + | chr5_1:50064778-50064797 | Msa0735070:intron | 40.0% |
| AAGGAGGCAATAGCAAAGAA+AGG | + | chr5_1:50064837-50064856 | Msa0735070:CDS | 40.0% | |
| ! | CATGGTGTTAGATTGTGAGA+AGG | + | chr5_1:50064887-50064906 | Msa0735070:CDS | 40.0% |
| !! | TTGATGATGGTAACACTCAC+TGG | + | chr5_1:50064954-50064973 | Msa0735070:CDS | 40.0% |
| GTTAAATTGATATCCTCGGC+CGG | + | chr5_1:50065002-50065021 | Msa0735070:CDS | 40.0% | |
| ! | TGTTGCTTCCAATTTGCTCA+AGG | + | chr5_1:50063130-50063149 | Msa0735070:CDS | 40.0% |
| CCATGGTTGTGTATGATATC+TGG | - | chr5_1:50063233-50063252 | None:intergenic | 40.0% | |
| CCAGATATCATACACAACCA+TGG | + | chr5_1:50063230-50063249 | Msa0735070:CDS | 40.0% | |
| !!! | AATGAGTTTTGAGAGTGGCA+TGG | - | chr5_1:50063261-50063280 | None:intergenic | 40.0% |
| CACATAGAGAATTGATGCCA+CGG | - | chr5_1:50063497-50063516 | None:intergenic | 40.0% | |
| ! | CATCATTTGAAACGACACAC+GGG | + | chr5_1:50063537-50063556 | Msa0735070:CDS | 40.0% |
| ACACAATGCACTCCATTTGT+GGG | - | chr5_1:50063754-50063773 | None:intergenic | 40.0% | |
| AACACAATGCACTCCATTTG+TGG | - | chr5_1:50063755-50063774 | None:intergenic | 40.0% | |
| GAGAAGCTAAGATATGTTGG+TGG | + | chr5_1:50063812-50063831 | Msa0735070:CDS | 40.0% | |
| GAAGCTAAGATATGTTGGTG+GGG | + | chr5_1:50063814-50063833 | Msa0735070:CDS | 40.0% | |
| CATGTTATCACGAGATGGTA+AGG | + | chr5_1:50063954-50063973 | Msa0735070:intron | 40.0% | |
| CACGAGATGGTAAGGTTTAA+TGG | + | chr5_1:50063962-50063981 | Msa0735070:intron | 40.0% | |
| AACGAGTGGTACAATGGTAT+GGG | - | chr5_1:50064381-50064400 | None:intergenic | 40.0% | |
| AAACGAGTGGTACAATGGTA+TGG | - | chr5_1:50064382-50064401 | None:intergenic | 40.0% | |
| TACCATTGTACCACTCGTTT+AGG | + | chr5_1:50064382-50064401 | Msa0735070:intron | 40.0% | |
| !! | ACCACTCGTTTAGGAGTATT+AGG | + | chr5_1:50064391-50064410 | Msa0735070:intron | 40.0% |
| TCCTAATACTCCTAAACGAG+TGG | - | chr5_1:50064395-50064414 | None:intergenic | 40.0% | |
| TAAAGGGAGAACGCTAAGAT+AGG | - | chr5_1:50064435-50064454 | None:intergenic | 40.0% | |
| TCTTAGCGTTCTCCCTTTAT+TGG | + | chr5_1:50064436-50064455 | Msa0735070:intron | 40.0% | |
| !! | TGTAGTGGATATTGCATGAC+TGG | + | chr5_1:50064778-50064797 | Msa0735070:intron | 40.0% |
| AAGGAGGCAATAGCAAAGAA+AGG | + | chr5_1:50064837-50064856 | Msa0735070:CDS | 40.0% | |
| ! | CATGGTGTTAGATTGTGAGA+AGG | + | chr5_1:50064887-50064906 | Msa0735070:CDS | 40.0% |
| !! | TTGATGATGGTAACACTCAC+TGG | + | chr5_1:50064954-50064973 | Msa0735070:CDS | 40.0% |
| GTTAAATTGATATCCTCGGC+CGG | + | chr5_1:50065002-50065021 | Msa0735070:CDS | 40.0% | |
| ! | GCTTTGAGCCTTGAGCAAAT+TGG | - | chr5_1:50063141-50063160 | None:intergenic | 45.0% |
| ! | AGAGTGGCATGGATTTTCCA+TGG | - | chr5_1:50063250-50063269 | None:intergenic | 45.0% |
| !!! | GGCTTTTTTGAAGGGTGGAT+TGG | - | chr5_1:50063293-50063312 | None:intergenic | 45.0% |
| !!! | TGCAAGGCTTTTTTGAAGGG+TGG | - | chr5_1:50063298-50063317 | None:intergenic | 45.0% |
| ATGCGAATCATGACTCACTC+TGG | + | chr5_1:50063329-50063348 | Msa0735070:CDS | 45.0% | |
| !! | ACGAATGGTGTCACACTCAT+TGG | - | chr5_1:50063443-50063462 | None:intergenic | 45.0% |
| ACCCAGTTATGATGAATCCG+TGG | + | chr5_1:50063477-50063496 | Msa0735070:CDS | 45.0% | |
| GCCACGGATTCATCATAACT+GGG | - | chr5_1:50063481-50063500 | None:intergenic | 45.0% | |
| TGCCACGGATTCATCATAAC+TGG | - | chr5_1:50063482-50063501 | None:intergenic | 45.0% | |
| CGTGGCATCAATTCTCTATG+TGG | + | chr5_1:50063495-50063514 | Msa0735070:CDS | 45.0% | |
| GACACACGGGATGTTGTTAT+GGG | + | chr5_1:50063550-50063569 | Msa0735070:CDS | 45.0% | |
| ! | GAGTCATTGGTTGATGTTGG+AGG | + | chr5_1:50063689-50063708 | Msa0735070:CDS | 45.0% |
| ! | TCATTGGTTGATGTTGGAGG+AGG | + | chr5_1:50063692-50063711 | Msa0735070:CDS | 45.0% |
| TTGATGTTGGAGGAGGAACA+GGG | + | chr5_1:50063699-50063718 | Msa0735070:CDS | 45.0% | |
| GATCTCCCACAAGTTGTTGA+TGG | + | chr5_1:50063776-50063795 | Msa0735070:CDS | 45.0% | |
| GCAAGCCATCAACAACTTGT+GGG | - | chr5_1:50063784-50063803 | None:intergenic | 45.0% | |
| TGCAAGCCATCAACAACTTG+TGG | - | chr5_1:50063785-50063804 | None:intergenic | 45.0% | |
| !! | CAAGTTGTTGATGGCTTGCA+AGG | + | chr5_1:50063785-50063804 | Msa0735070:CDS | 45.0% |
| CTCCTAAACGAGTGGTACAA+TGG | - | chr5_1:50064387-50064406 | None:intergenic | 45.0% | |
| ! | GCTTTGAGCCTTGAGCAAAT+TGG | - | chr5_1:50063141-50063160 | None:intergenic | 45.0% |
| ! | AGAGTGGCATGGATTTTCCA+TGG | - | chr5_1:50063250-50063269 | None:intergenic | 45.0% |
| !!! | GGCTTTTTTGAAGGGTGGAT+TGG | - | chr5_1:50063293-50063312 | None:intergenic | 45.0% |
| !!! | TGCAAGGCTTTTTTGAAGGG+TGG | - | chr5_1:50063298-50063317 | None:intergenic | 45.0% |
| ATGCGAATCATGACTCACTC+TGG | + | chr5_1:50063329-50063348 | Msa0735070:CDS | 45.0% | |
| !! | ACGAATGGTGTCACACTCAT+TGG | - | chr5_1:50063443-50063462 | None:intergenic | 45.0% |
| ACCCAGTTATGATGAATCCG+TGG | + | chr5_1:50063477-50063496 | Msa0735070:CDS | 45.0% | |
| GCCACGGATTCATCATAACT+GGG | - | chr5_1:50063481-50063500 | None:intergenic | 45.0% | |
| TGCCACGGATTCATCATAAC+TGG | - | chr5_1:50063482-50063501 | None:intergenic | 45.0% | |
| CGTGGCATCAATTCTCTATG+TGG | + | chr5_1:50063495-50063514 | Msa0735070:CDS | 45.0% | |
| GACACACGGGATGTTGTTAT+GGG | + | chr5_1:50063550-50063569 | Msa0735070:CDS | 45.0% | |
| ! | GAGTCATTGGTTGATGTTGG+AGG | + | chr5_1:50063689-50063708 | Msa0735070:CDS | 45.0% |
| ! | TCATTGGTTGATGTTGGAGG+AGG | + | chr5_1:50063692-50063711 | Msa0735070:CDS | 45.0% |
| TTGATGTTGGAGGAGGAACA+GGG | + | chr5_1:50063699-50063718 | Msa0735070:CDS | 45.0% | |
| GATCTCCCACAAGTTGTTGA+TGG | + | chr5_1:50063776-50063795 | Msa0735070:CDS | 45.0% | |
| GCAAGCCATCAACAACTTGT+GGG | - | chr5_1:50063784-50063803 | None:intergenic | 45.0% | |
| TGCAAGCCATCAACAACTTG+TGG | - | chr5_1:50063785-50063804 | None:intergenic | 45.0% | |
| !! | CAAGTTGTTGATGGCTTGCA+AGG | + | chr5_1:50063785-50063804 | Msa0735070:CDS | 45.0% |
| CTCCTAAACGAGTGGTACAA+TGG | - | chr5_1:50064387-50064406 | None:intergenic | 45.0% | |
| !!! | TTTATTTTATTTTTTTGTAA+TGG | + | chr5_1:50064069-50064088 | Msa0735070:intron | 5.0% |
| !!! | TTATTTTATTTTTTTGTAAT+GGG | + | chr5_1:50064070-50064089 | Msa0735070:intron | 5.0% |
| !!! | TTTATTTTATTTTTTTGTAA+TGG | + | chr5_1:50064069-50064088 | Msa0735070:intron | 5.0% |
| !!! | TTATTTTATTTTTTTGTAAT+GGG | + | chr5_1:50064070-50064089 | Msa0735070:intron | 5.0% |
| TCAAGGCTCAAAGCCACGTA+TGG | + | chr5_1:50063147-50063166 | Msa0735070:CDS | 50.0% | |
| CGCATCAAGCGATAGATGCA+AGG | - | chr5_1:50063314-50063333 | None:intergenic | 50.0% | |
| CGACACACGGGATGTTGTTA+TGG | + | chr5_1:50063549-50063568 | Msa0735070:CDS | 50.0% | |
| GTTGATGTTGGAGGAGGAAC+AGG | + | chr5_1:50063698-50063717 | Msa0735070:CDS | 50.0% | |
| AGCGTTCTCCCTTTATTGGC+CGG | + | chr5_1:50064440-50064459 | Msa0735070:intron | 50.0% | |
| ACCCGTTTATAGGGTCTAGC+CGG | - | chr5_1:50064462-50064481 | None:intergenic | 50.0% | |
| ACCCTATAAACGGGTGGTTC+AGG | + | chr5_1:50064467-50064486 | Msa0735070:intron | 50.0% | |
| GCCTGAACCACCCGTTTATA+GGG | - | chr5_1:50064471-50064490 | None:intergenic | 50.0% | |
| AGCCTGAACCACCCGTTTAT+AGG | - | chr5_1:50064472-50064491 | None:intergenic | 50.0% | |
| TCAAGGCTCAAAGCCACGTA+TGG | + | chr5_1:50063147-50063166 | Msa0735070:CDS | 50.0% | |
| CGCATCAAGCGATAGATGCA+AGG | - | chr5_1:50063314-50063333 | None:intergenic | 50.0% | |
| CGACACACGGGATGTTGTTA+TGG | + | chr5_1:50063549-50063568 | Msa0735070:CDS | 50.0% | |
| GTTGATGTTGGAGGAGGAAC+AGG | + | chr5_1:50063698-50063717 | Msa0735070:CDS | 50.0% | |
| AGCGTTCTCCCTTTATTGGC+CGG | + | chr5_1:50064440-50064459 | Msa0735070:intron | 50.0% | |
| ACCCGTTTATAGGGTCTAGC+CGG | - | chr5_1:50064462-50064481 | None:intergenic | 50.0% | |
| ACCCTATAAACGGGTGGTTC+AGG | + | chr5_1:50064467-50064486 | Msa0735070:intron | 50.0% | |
| GCCTGAACCACCCGTTTATA+GGG | - | chr5_1:50064471-50064490 | None:intergenic | 50.0% | |
| AGCCTGAACCACCCGTTTAT+AGG | - | chr5_1:50064472-50064491 | None:intergenic | 50.0% | |
| ! | TCGAGCATCGCGTACACGAA+TGG | - | chr5_1:50063458-50063477 | None:intergenic | 55.0% |
| TGGAGGAGGAACAGGGACTA+TGG | + | chr5_1:50063706-50063725 | Msa0735070:CDS | 55.0% | |
| GGGTCTAGCCGGCCAATAAA+GGG | - | chr5_1:50064451-50064470 | None:intergenic | 55.0% | |
| AGGGTCTAGCCGGCCAATAA+AGG | - | chr5_1:50064452-50064471 | None:intergenic | 55.0% | |
| GGCCGGCTAGACCCTATAAA+CGG | + | chr5_1:50064457-50064476 | Msa0735070:intron | 55.0% | |
| GCCGGCTAGACCCTATAAAC+GGG | + | chr5_1:50064458-50064477 | Msa0735070:intron | 55.0% | |
| GGCTAGACCCTATAAACGGG+TGG | + | chr5_1:50064461-50064480 | Msa0735070:intron | 55.0% | |
| GTAGTCACTAAAACCGGCCG+AGG | - | chr5_1:50065018-50065037 | None:intergenic | 55.0% | |
| ! | TCGAGCATCGCGTACACGAA+TGG | - | chr5_1:50063458-50063477 | None:intergenic | 55.0% |
| TGGAGGAGGAACAGGGACTA+TGG | + | chr5_1:50063706-50063725 | Msa0735070:CDS | 55.0% | |
| GGGTCTAGCCGGCCAATAAA+GGG | - | chr5_1:50064451-50064470 | None:intergenic | 55.0% | |
| AGGGTCTAGCCGGCCAATAA+AGG | - | chr5_1:50064452-50064471 | None:intergenic | 55.0% | |
| GGCCGGCTAGACCCTATAAA+CGG | + | chr5_1:50064457-50064476 | Msa0735070:intron | 55.0% | |
| GCCGGCTAGACCCTATAAAC+GGG | + | chr5_1:50064458-50064477 | Msa0735070:intron | 55.0% | |
| GGCTAGACCCTATAAACGGG+TGG | + | chr5_1:50064461-50064480 | Msa0735070:intron | 55.0% | |
| GTAGTCACTAAAACCGGCCG+AGG | - | chr5_1:50065018-50065037 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 50063104 | 50065097 | 50063104 | ID=Msa0735070;Name=Msa0735070 |
| chr5_1 | mRNA | 50063104 | 50065097 | 50063104 | ID=Msa0735070-mRNA-1;Parent=Msa0735070;Name=Msa0735070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|363 |
| chr5_1 | exon | 50063104 | 50063880 | 50063104 | ID=Msa0735070-mRNA-1:exon:14113;Parent=Msa0735070-mRNA-1 |
| chr5_1 | exon | 50064783 | 50065097 | 50064783 | ID=Msa0735070-mRNA-1:exon:14114;Parent=Msa0735070-mRNA-1 |
| chr5_1 | CDS | 50063104 | 50063880 | 50063104 | ID=Msa0735070-mRNA-1:cds;Parent=Msa0735070-mRNA-1 |
| chr5_1 | CDS | 50064783 | 50065097 | 50064783 | ID=Msa0735070-mRNA-1:cds;Parent=Msa0735070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
