Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814140 | XP_003615973.1 | 96.694 | 363 | 12 | 0 | 1 | 363 | 1 | 363 | 0.0 | 733 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814140 | sp|B0ZB57|OMT3_HUMLU | 59.610 | 359 | 139 | 3 | 6 | 359 | 19 | 376 | 2.35e-161 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814140 | G7KFK0 | 96.694 | 363 | 12 | 0 | 1 | 363 | 1 | 363 | 0.0 | 733 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0735070 | Msa0814140 | 0.902702 | 7.402213e-79 | -8.615850e-47 |
| Msa0777040 | Msa0814140 | 0.879548 | 1.138976e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814140 | MtrunA17_Chr5g0432301 | 96.694 | 363 | 12 | 0 | 1 | 363 | 1 | 363 | 0.0 | 733 |
| Msa0814140 | MtrunA17_Chr5g0432251 | 85.237 | 359 | 52 | 1 | 1 | 359 | 1 | 358 | 0.0 | 637 |
| Msa0814140 | MtrunA17_Chr5g0432241 | 83.287 | 359 | 60 | 0 | 1 | 359 | 1 | 359 | 0.0 | 625 |
| Msa0814140 | MtrunA17_Chr5g0432211 | 75.209 | 359 | 74 | 2 | 1 | 359 | 1 | 344 | 0.0 | 546 |
| Msa0814140 | MtrunA17_Chr5g0432261 | 71.309 | 359 | 70 | 3 | 1 | 359 | 1 | 326 | 0.0 | 518 |
| Msa0814140 | MtrunA17_Chr4g0040621 | 61.111 | 360 | 133 | 4 | 1 | 359 | 15 | 368 | 3.94e-160 | 453 |
| Msa0814140 | MtrunA17_Chr4g0014681 | 50.959 | 365 | 170 | 6 | 1 | 359 | 1 | 362 | 1.39e-118 | 347 |
| Msa0814140 | MtrunA17_Chr4g0014561 | 50.411 | 365 | 172 | 6 | 1 | 359 | 1 | 362 | 8.98e-117 | 343 |
| Msa0814140 | MtrunA17_Chr4g0046361 | 46.591 | 352 | 182 | 5 | 12 | 359 | 11 | 360 | 4.42e-113 | 333 |
| Msa0814140 | MtrunA17_Chr4g0014641 | 48.760 | 363 | 175 | 6 | 3 | 359 | 5 | 362 | 1.59e-111 | 329 |
| Msa0814140 | MtrunA17_Chr1g0188391 | 45.604 | 364 | 189 | 7 | 1 | 359 | 1 | 360 | 1.40e-110 | 327 |
| Msa0814140 | MtrunA17_Chr7g0223231 | 43.889 | 360 | 192 | 5 | 1 | 360 | 1 | 350 | 1.64e-107 | 319 |
| Msa0814140 | MtrunA17_Chr7g0223241 | 43.889 | 360 | 192 | 5 | 1 | 360 | 1 | 350 | 2.93e-106 | 315 |
| Msa0814140 | MtrunA17_Chr7g0219141 | 44.598 | 361 | 188 | 6 | 3 | 359 | 4 | 356 | 3.13e-106 | 316 |
| Msa0814140 | MtrunA17_Chr4g0046341 | 46.429 | 364 | 184 | 6 | 3 | 359 | 4 | 363 | 1.23e-105 | 314 |
| Msa0814140 | MtrunA17_Chr7g0219161 | 44.957 | 347 | 185 | 5 | 3 | 348 | 4 | 345 | 4.20e-104 | 310 |
| Msa0814140 | MtrunA17_Chr4g0046531 | 44.413 | 349 | 189 | 4 | 12 | 359 | 11 | 355 | 1.45e-97 | 305 |
| Msa0814140 | MtrunA17_Chr4g0046531 | 43.266 | 349 | 193 | 4 | 12 | 359 | 373 | 717 | 7.45e-95 | 298 |
| Msa0814140 | MtrunA17_Chr4g0014661 | 46.439 | 351 | 180 | 5 | 12 | 359 | 11 | 356 | 1.28e-96 | 291 |
| Msa0814140 | MtrunA17_Chr1g0188371 | 43.149 | 343 | 189 | 5 | 1 | 340 | 1 | 340 | 1.16e-92 | 282 |
| Msa0814140 | MtrunA17_Chr4g0014591 | 44.160 | 351 | 188 | 5 | 12 | 359 | 11 | 356 | 2.95e-90 | 275 |
| Msa0814140 | MtrunA17_Chr3g0121301 | 39.763 | 337 | 196 | 4 | 21 | 356 | 27 | 357 | 1.24e-81 | 253 |
| Msa0814140 | MtrunA17_Chr4g0021981 | 38.682 | 349 | 204 | 6 | 15 | 359 | 25 | 367 | 5.57e-79 | 246 |
| Msa0814140 | MtrunA17_Chr4g0022021 | 38.968 | 349 | 203 | 7 | 15 | 359 | 25 | 367 | 1.16e-74 | 235 |
| Msa0814140 | MtrunA17_Chr4g0014601 | 41.339 | 254 | 142 | 4 | 12 | 262 | 11 | 260 | 8.52e-65 | 206 |
| Msa0814140 | MtrunA17_Chr7g0276411 | 32.209 | 326 | 202 | 10 | 31 | 345 | 30 | 347 | 6.07e-52 | 176 |
| Msa0814140 | MtrunA17_Chr7g0276401 | 33.125 | 320 | 202 | 8 | 32 | 345 | 47 | 360 | 4.92e-50 | 171 |
| Msa0814140 | MtrunA17_Chr3g0128011 | 31.366 | 322 | 208 | 9 | 32 | 346 | 88 | 403 | 2.41e-49 | 171 |
| Msa0814140 | MtrunA17_Chr8g0345851 | 36.330 | 267 | 162 | 6 | 95 | 359 | 29 | 289 | 1.02e-48 | 166 |
| Msa0814140 | MtrunA17_Chr8g0367441 | 35.656 | 244 | 151 | 4 | 99 | 341 | 120 | 358 | 1.64e-48 | 167 |
| Msa0814140 | MtrunA17_Chr8g0367501 | 31.343 | 335 | 215 | 9 | 20 | 345 | 20 | 348 | 1.66e-47 | 166 |
| Msa0814140 | MtrunA17_Chr8g0367491 | 29.814 | 322 | 213 | 6 | 32 | 345 | 45 | 361 | 2.02e-46 | 162 |
| Msa0814140 | MtrunA17_Chr5g0448091 | 30.769 | 325 | 209 | 10 | 32 | 347 | 33 | 350 | 9.60e-46 | 160 |
| Msa0814140 | MtrunA17_Chr7g0219171 | 54.135 | 133 | 59 | 2 | 227 | 359 | 117 | 247 | 1.91e-44 | 153 |
| Msa0814140 | MtrunA17_Chr7g0219171 | 44.954 | 109 | 56 | 1 | 12 | 120 | 11 | 115 | 1.58e-21 | 92.4 |
| Msa0814140 | MtrunA17_Chr7g0218261 | 29.825 | 342 | 224 | 9 | 27 | 359 | 33 | 367 | 1.98e-44 | 157 |
| Msa0814140 | MtrunA17_Chr8g0367451 | 31.132 | 318 | 206 | 7 | 32 | 341 | 45 | 357 | 3.78e-44 | 156 |
| Msa0814140 | MtrunA17_Chr1g0200491 | 28.916 | 332 | 218 | 8 | 27 | 347 | 34 | 358 | 1.93e-43 | 154 |
| Msa0814140 | MtrunA17_Chr2g0307521 | 29.794 | 339 | 214 | 10 | 34 | 359 | 35 | 362 | 1.99e-43 | 154 |
| Msa0814140 | MtrunA17_Chr7g0218301 | 29.226 | 349 | 223 | 9 | 27 | 359 | 34 | 374 | 4.50e-43 | 153 |
| Msa0814140 | MtrunA17_Chr7g0218271 | 29.598 | 348 | 223 | 11 | 27 | 359 | 34 | 374 | 1.01e-42 | 152 |
| Msa0814140 | MtrunA17_Chr7g0218131 | 28.739 | 341 | 230 | 8 | 27 | 359 | 34 | 369 | 3.91e-41 | 148 |
| Msa0814140 | MtrunA17_Chr7g0218181 | 28.152 | 341 | 229 | 9 | 27 | 359 | 34 | 366 | 6.30e-41 | 147 |
| Msa0814140 | MtrunA17_Chr1g0163601 | 28.836 | 378 | 241 | 10 | 1 | 359 | 1 | 369 | 1.06e-40 | 147 |
| Msa0814140 | MtrunA17_Chr1g0163611 | 35.814 | 215 | 131 | 4 | 147 | 359 | 160 | 369 | 1.87e-39 | 143 |
| Msa0814140 | MtrunA17_Chr3g0085201 | 28.977 | 352 | 234 | 9 | 1 | 346 | 1 | 342 | 5.35e-39 | 142 |
| Msa0814140 | MtrunA17_Chr7g0218211 | 27.859 | 341 | 233 | 8 | 27 | 359 | 33 | 368 | 1.36e-38 | 141 |
| Msa0814140 | MtrunA17_Chr8g0367381 | 38.378 | 185 | 104 | 5 | 147 | 328 | 149 | 326 | 1.30e-37 | 137 |
| Msa0814140 | MtrunA17_Chr1g0163621 | 28.902 | 346 | 228 | 9 | 26 | 359 | 44 | 383 | 1.71e-37 | 139 |
| Msa0814140 | MtrunA17_Chr3g0085211 | 29.664 | 327 | 214 | 8 | 29 | 347 | 38 | 356 | 1.48e-36 | 135 |
| Msa0814140 | MtrunA17_Chr2g0314271 | 30.530 | 321 | 208 | 8 | 32 | 345 | 27 | 339 | 4.19e-36 | 134 |
| Msa0814140 | MtrunA17_Chr3g0130061 | 27.794 | 349 | 234 | 10 | 8 | 345 | 2 | 343 | 1.51e-32 | 125 |
| Msa0814140 | MtrunA17_Chr3g0130011 | 27.747 | 364 | 243 | 12 | 8 | 359 | 2 | 357 | 1.29e-30 | 119 |
| Msa0814140 | MtrunA17_Chr6g0482291 | 33.908 | 174 | 101 | 5 | 173 | 345 | 1 | 161 | 1.51e-23 | 95.9 |
| Msa0814140 | MtrunA17_Chr8g0367401 | 38.182 | 110 | 67 | 1 | 150 | 259 | 2 | 110 | 1.26e-21 | 89.7 |
| Msa0814140 | MtrunA17_Chr4g0014611 | 59.000 | 100 | 40 | 1 | 260 | 359 | 8 | 106 | 3.00e-21 | 87.8 |
| Msa0814140 | MtrunA17_Chr8g0367461 | 43.878 | 98 | 50 | 3 | 246 | 342 | 1 | 94 | 4.92e-19 | 81.6 |
| Msa0814140 | MtrunA17_Chr4g0014671 | 58.095 | 105 | 43 | 1 | 255 | 359 | 30 | 133 | 5.92e-17 | 76.6 |
| Msa0814140 | MtrunA17_Chr4g0011691 | 45.361 | 97 | 48 | 3 | 261 | 356 | 140 | 232 | 6.26e-17 | 79.3 |
| Msa0814140 | MtrunA17_Chr8g0367391 | 37.383 | 107 | 61 | 3 | 237 | 341 | 13 | 115 | 4.56e-15 | 71.6 |
| Msa0814140 | MtrunA17_Chr8g0367421 | 32.727 | 110 | 56 | 2 | 150 | 259 | 2 | 93 | 8.24e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814140 | AT4G35160.1 | 35.484 | 372 | 217 | 10 | 4 | 359 | 16 | 380 | 1.29e-65 | 213 |
| Msa0814140 | AT4G35150.1 | 33.151 | 365 | 192 | 9 | 4 | 359 | 2 | 323 | 2.63e-61 | 200 |
| Msa0814140 | AT5G54160.1 | 32.500 | 320 | 205 | 8 | 32 | 346 | 34 | 347 | 3.76e-52 | 177 |
| Msa0814140 | AT1G51990.2 | 32.827 | 329 | 202 | 8 | 44 | 359 | 39 | 361 | 2.12e-48 | 167 |
| Msa0814140 | AT1G51990.1 | 32.827 | 329 | 202 | 8 | 44 | 359 | 39 | 361 | 4.58e-48 | 166 |
| Msa0814140 | AT1G77520.1 | 30.079 | 379 | 226 | 11 | 2 | 359 | 20 | 380 | 1.82e-43 | 155 |
| Msa0814140 | AT1G33030.1 | 32.317 | 328 | 197 | 12 | 32 | 346 | 21 | 336 | 4.39e-40 | 145 |
| Msa0814140 | AT1G63140.2 | 31.903 | 373 | 227 | 12 | 2 | 359 | 20 | 380 | 5.98e-39 | 143 |
| Msa0814140 | AT1G63140.4 | 31.903 | 373 | 227 | 12 | 2 | 359 | 40 | 400 | 6.83e-39 | 143 |
| Msa0814140 | AT3G53140.1 | 30.769 | 325 | 207 | 9 | 32 | 345 | 27 | 344 | 1.05e-38 | 142 |
| Msa0814140 | AT1G77530.1 | 31.367 | 373 | 229 | 12 | 2 | 359 | 20 | 380 | 4.31e-38 | 140 |
| Msa0814140 | AT5G53810.1 | 30.946 | 349 | 209 | 11 | 32 | 359 | 40 | 377 | 6.09e-37 | 137 |
| Msa0814140 | AT1G21130.1 | 31.024 | 332 | 198 | 13 | 32 | 345 | 40 | 358 | 8.49e-35 | 131 |
| Msa0814140 | AT1G21110.1 | 30.091 | 329 | 199 | 13 | 32 | 342 | 40 | 355 | 7.65e-33 | 126 |
| Msa0814140 | AT1G21100.1 | 29.129 | 333 | 205 | 11 | 32 | 346 | 40 | 359 | 1.01e-32 | 126 |
| Msa0814140 | AT1G21120.1 | 30.030 | 333 | 202 | 13 | 32 | 346 | 40 | 359 | 2.06e-32 | 125 |
| Msa0814140 | AT1G21120.2 | 30.030 | 333 | 202 | 13 | 32 | 346 | 88 | 407 | 4.35e-32 | 125 |
| Msa0814140 | AT1G62900.1 | 37.981 | 208 | 124 | 3 | 153 | 359 | 1 | 204 | 5.73e-32 | 119 |
| Msa0814140 | AT5G37170.2 | 33.803 | 213 | 129 | 7 | 151 | 359 | 29 | 233 | 1.24e-31 | 119 |
| Msa0814140 | AT5G37170.1 | 33.803 | 213 | 129 | 7 | 151 | 359 | 129 | 333 | 2.37e-31 | 121 |
| Msa0814140 | AT1G76790.1 | 28.440 | 327 | 207 | 7 | 32 | 341 | 30 | 346 | 1.89e-30 | 119 |
| Msa0814140 | AT5G37170.3 | 34.555 | 191 | 115 | 6 | 173 | 359 | 1 | 185 | 8.46e-28 | 108 |
| Msa0814140 | AT1G63140.1 | 28.309 | 272 | 172 | 9 | 2 | 259 | 40 | 302 | 1.57e-17 | 82.8 |
| Msa0814140 | AT1G33030.2 | 28.452 | 239 | 153 | 8 | 32 | 259 | 21 | 252 | 7.30e-17 | 80.1 |
| Msa0814140 | AT1G33030.3 | 28.452 | 239 | 153 | 8 | 32 | 259 | 21 | 252 | 9.93e-17 | 79.7 |
| Msa0814140 | AT1G21130.2 | 26.749 | 243 | 155 | 9 | 32 | 259 | 40 | 274 | 3.15e-12 | 67.0 |
Find 69 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACATTCTCTTGATTATTT+TGG | 0.038368 | 5_3:-45961409 | None:intergenic |
| TCAATTAGTTTCCAATTTAT+TGG | 0.157383 | 5_3:+45961931 | Msa0814140:CDS |
| GTTAACATATACTCAATTTC+TGG | 0.174426 | 5_3:-45961683 | None:intergenic |
| GCACTTCTCAACCAATAAAT+TGG | 0.202449 | 5_3:-45961942 | None:intergenic |
| CAATTTAACCCATTCTTTCT+TGG | 0.222335 | 5_3:-45963284 | None:intergenic |
| ACAGCTCTTAACCCTAAAAT+TGG | 0.269525 | 5_3:-45963343 | None:intergenic |
| CGACACACGGGATGTTGTTA+TGG | 0.290673 | 5_3:+45961846 | Msa0814140:CDS |
| CCATGGTTGTGTATGATATC+TGG | 0.301298 | 5_3:-45961527 | None:intergenic |
| GATCTCCCACATATTGTTGA+TGG | 0.312037 | 5_3:+45962073 | Msa0814140:CDS |
| TGCAAAATCATTCCCACAAA+TGG | 0.347819 | 5_3:+45962036 | Msa0814140:CDS |
| TGCCACGGATTCATCATAAC+TGG | 0.358498 | 5_3:-45961776 | None:intergenic |
| GTTGATGTTGGAGGAGGAAC+AGG | 0.362777 | 5_3:+45961995 | Msa0814140:CDS |
| TGCATCTAGATTATTACTTA+AGG | 0.368848 | 5_3:+45961709 | Msa0814140:CDS |
| GTTCAATGAATTTGAGTCAT+TGG | 0.391032 | 5_3:+45961973 | Msa0814140:CDS |
| CAATTTATTTAATGAGTCAA+TGG | 0.392635 | 5_3:+45961898 | Msa0814140:CDS |
| GCTTTGAGCCTTGAGCAAAT+TGG | 0.420837 | 5_3:-45961435 | None:intergenic |
| AACAAAATTGCATCTGTTGG+CGG | 0.431252 | 5_3:-45962151 | None:intergenic |
| AAGAGAGAACCAAGAAAGAA+TGG | 0.431260 | 5_3:+45963275 | Msa0814140:CDS |
| TGGAGGAGGAACAGGGACTA+TGG | 0.434351 | 5_3:+45962003 | Msa0814140:CDS |
| AGAAATTGAGTATATGTTAA+CGG | 0.434868 | 5_3:+45961685 | Msa0814140:CDS |
| GACACACGGGATGTTGTTAT+GGG | 0.439136 | 5_3:+45961847 | Msa0814140:CDS |
| ACGAATGGTGTCACACTCAT+TGG | 0.441378 | 5_3:-45961737 | None:intergenic |
| CTTCTTTGATATGTTGATGA+TGG | 0.447651 | 5_3:+45963237 | Msa0814140:CDS |
| CTTAAATGTGTAGTTGACTT+AGG | 0.449531 | 5_3:+45961500 | Msa0814140:CDS |
| AGTGAGAAGCTAAGATATGT+TGG | 0.452323 | 5_3:+45962106 | Msa0814140:CDS |
| AACACAATGCACTCCATTTG+TGG | 0.453290 | 5_3:-45962049 | None:intergenic |
| TTTGAGTCATTGGTTGATGT+TGG | 0.460976 | 5_3:+45961983 | Msa0814140:CDS |
| CATATTGTTGATGGCTTGCA+AGG | 0.472196 | 5_3:+45962082 | Msa0814140:CDS |
| TGCAAGCCATCAACAATATG+TGG | 0.481265 | 5_3:-45962079 | None:intergenic |
| AAAGAAAGGTAAAGAAGGAA+AGG | 0.487837 | 5_3:+45963147 | Msa0814140:CDS |
| TTCAACAAAATTGCATCTGT+TGG | 0.490404 | 5_3:-45962154 | None:intergenic |
| ATGGTGTTAGATTGTGAGAA+GGG | 0.493895 | 5_3:+45963184 | Msa0814140:CDS |
| TATCTTGTAGTCACTAAAAC+CGG | 0.495764 | 5_3:-45963317 | None:intergenic |
| GAAGATATTAAAGAATTGTA+AGG | 0.505831 | 5_3:+45963114 | Msa0814140:CDS |
| TTGATGATGGTAACACTCAC+TGG | 0.510994 | 5_3:+45963250 | Msa0814140:CDS |
| ACACAATGCACTCCATTTGT+GGG | 0.515239 | 5_3:-45962048 | None:intergenic |
| TGTAGTGGATATTGCATGAC+TGG | 0.519677 | 5_3:+45963074 | Msa0814140:intron |
| CATGGTGTTAGATTGTGAGA+AGG | 0.520696 | 5_3:+45963183 | Msa0814140:CDS |
| AGAGAGAACCAAGAAAGAAT+GGG | 0.522205 | 5_3:+45963276 | Msa0814140:CDS |
| TGTTGCTTCCAATTTGCTCA+AGG | 0.535107 | 5_3:+45961427 | Msa0814140:CDS |
| GAAGGGAGACAATAATGAAT+CGG | 0.547439 | 5_3:+45963201 | Msa0814140:CDS |
| ATAGCAAAGAAAGGTAAAGA+AGG | 0.550930 | 5_3:+45963142 | Msa0814140:CDS |
| GAGTCATTGGTTGATGTTGG+AGG | 0.554899 | 5_3:+45961986 | Msa0814140:CDS |
| CGTGGCATCAATTCTCTATG+TGG | 0.558108 | 5_3:+45961792 | Msa0814140:CDS |
| CGCATCAAGCGATAGATGCA+AGG | 0.562811 | 5_3:-45961608 | None:intergenic |
| AGAAGCTAAGATATGTTGGT+GGG | 0.573478 | 5_3:+45962110 | Msa0814140:CDS |
| TCGAGCATCGCGTACACGAA+TGG | 0.574656 | 5_3:-45961752 | None:intergenic |
| ATGCGAATCATGACTCACTC+TGG | 0.576549 | 5_3:+45961626 | Msa0814140:CDS |
| AAGGATGCAATAGCAAAGAA+AGG | 0.578531 | 5_3:+45963133 | Msa0814140:CDS |
| GTAGTCACTAAAACCGGCCG+AGG | 0.580559 | 5_3:-45963311 | None:intergenic |
| GTTAAATTGATATCCTCGGC+CGG | 0.582802 | 5_3:+45963298 | Msa0814140:CDS |
| ATGGGTTAAATTGATATCCT+CGG | 0.589713 | 5_3:+45963294 | Msa0814140:CDS |
| TTTATTGGTTGAGAAGTGCA+AGG | 0.591471 | 5_3:+45961946 | Msa0814140:CDS |
| TTATTGGTTGAGAAGTGCAA+GGG | 0.594326 | 5_3:+45961947 | Msa0814140:CDS |
| TCAAGGCTCAAAGCCACGTA+TGG | 0.597244 | 5_3:+45961444 | Msa0814140:CDS |
| CACATAGAGAATTGATGCCA+CGG | 0.606841 | 5_3:-45961791 | None:intergenic |
| GCCACGGATTCATCATAACT+GGG | 0.617476 | 5_3:-45961775 | None:intergenic |
| GAGAAGCTAAGATATGTTGG+TGG | 0.617907 | 5_3:+45962109 | Msa0814140:CDS |
| ACATCATTTGAAACGACACA+CGG | 0.621968 | 5_3:+45961833 | Msa0814140:CDS |
| TGAAAATGTGATTCCATACG+TGG | 0.623179 | 5_3:-45961457 | None:intergenic |
| TCATTGGTTGATGTTGGAGG+AGG | 0.629765 | 5_3:+45961989 | Msa0814140:CDS |
| CTTCTCTCAACAAAATGTTG+CGG | 0.629768 | 5_3:+45961652 | Msa0814140:CDS |
| GCAAGCCATCAACAATATGT+GGG | 0.635342 | 5_3:-45962078 | None:intergenic |
| CCAGATATCATACACAACCA+TGG | 0.643900 | 5_3:+45961527 | Msa0814140:CDS |
| GAAGCTAAGATATGTTGGTG+GGG | 0.652324 | 5_3:+45962111 | Msa0814140:CDS |
| TTGATGTTGGAGGAGGAACA+GGG | 0.660754 | 5_3:+45961996 | Msa0814140:CDS |
| ACCCAGTTATGATGAATCCG+TGG | 0.665584 | 5_3:+45961774 | Msa0814140:CDS |
| CATCATTTGAAACGACACAC+GGG | 0.671406 | 5_3:+45961834 | Msa0814140:CDS |
| AAAGGTAGTTATCATAGACA+TGG | 0.689933 | 5_3:+45963165 | Msa0814140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCAACTAATTTATTTTTT+AGG | + | chr5_3:45962320-45962339 | Msa0814140:intron | 10.0% |
| !!! | ATCAACTAATTTATTTTTTA+GGG | + | chr5_3:45962321-45962340 | Msa0814140:intron | 10.0% |
| !!! | AATCAACTAATTTATTTTTT+AGG | + | chr5_3:45962320-45962339 | Msa0814140:intron | 10.0% |
| !!! | ATCAACTAATTTATTTTTTA+GGG | + | chr5_3:45962321-45962340 | Msa0814140:intron | 10.0% |
| !!! | TCAACTAATTTATTTTTTAG+GGG | + | chr5_3:45962322-45962341 | Msa0814140:intron | 15.0% |
| !! | TATTAGAAAGAAAATGTTAT+TGG | + | chr5_3:45962634-45962653 | Msa0814140:intron | 15.0% |
| !!! | TAGAGATAAACTTTTTTAAT+AGG | - | chr5_3:45962839-45962858 | None:intergenic | 15.0% |
| !!! | TCAACTAATTTATTTTTTAG+GGG | + | chr5_3:45962322-45962341 | Msa0814140:intron | 15.0% |
| !! | TATTAGAAAGAAAATGTTAT+TGG | + | chr5_3:45962634-45962653 | Msa0814140:intron | 15.0% |
| !!! | TAGAGATAAACTTTTTTAAT+AGG | - | chr5_3:45962839-45962858 | None:intergenic | 15.0% |
| !!! | AACATTCTCTTGATTATTTT+GGG | - | chr5_3:45961411-45961430 | None:intergenic | 20.0% |
| !! | AGAAATTGAGTATATGTTAA+CGG | + | chr5_3:45961685-45961704 | Msa0814140:CDS | 20.0% |
| !! | CAATTTATTTAATGAGTCAA+TGG | + | chr5_3:45961898-45961917 | Msa0814140:CDS | 20.0% |
| !!! | TCAATTAGTTTCCAATTTAT+TGG | + | chr5_3:45961931-45961950 | Msa0814140:CDS | 20.0% |
| !!! | TAGTTGATTGTTTTCTTATA+TGG | - | chr5_3:45962309-45962328 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTTGTAATGGGT+AGG | + | chr5_3:45962369-45962388 | Msa0814140:intron | 20.0% |
| !!! | ATTCACACAGTTATTTTTAT+AGG | + | chr5_3:45962400-45962419 | Msa0814140:intron | 20.0% |
| !! | CTTCTTACATAAAAAAATGT+TGG | - | chr5_3:45962488-45962507 | None:intergenic | 20.0% |
| !!! | AATATTTTTTTGCCACATTT+TGG | + | chr5_3:45962943-45962962 | Msa0814140:intron | 20.0% |
| !! | TAAAATAAGGAGAATATGAA+GGG | - | chr5_3:45962982-45963001 | None:intergenic | 20.0% |
| !! | ATAAAATAAGGAGAATATGA+AGG | - | chr5_3:45962983-45963002 | None:intergenic | 20.0% |
| !! | ACTGAAATGAAGATAAAATA+AGG | - | chr5_3:45962995-45963014 | None:intergenic | 20.0% |
| !! | GAAGATATTAAAGAATTGTA+AGG | + | chr5_3:45963114-45963133 | Msa0814140:CDS | 20.0% |
| !!! | AACATTCTCTTGATTATTTT+GGG | - | chr5_3:45961411-45961430 | None:intergenic | 20.0% |
| !! | AGAAATTGAGTATATGTTAA+CGG | + | chr5_3:45961685-45961704 | Msa0814140:CDS | 20.0% |
| !! | CAATTTATTTAATGAGTCAA+TGG | + | chr5_3:45961898-45961917 | Msa0814140:CDS | 20.0% |
| !!! | TCAATTAGTTTCCAATTTAT+TGG | + | chr5_3:45961931-45961950 | Msa0814140:CDS | 20.0% |
| !!! | TAGTTGATTGTTTTCTTATA+TGG | - | chr5_3:45962309-45962328 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTTGTAATGGGT+AGG | + | chr5_3:45962369-45962388 | Msa0814140:intron | 20.0% |
| !!! | ATTCACACAGTTATTTTTAT+AGG | + | chr5_3:45962400-45962419 | Msa0814140:intron | 20.0% |
| !! | CTTCTTACATAAAAAAATGT+TGG | - | chr5_3:45962488-45962507 | None:intergenic | 20.0% |
| !!! | AATATTTTTTTGCCACATTT+TGG | + | chr5_3:45962943-45962962 | Msa0814140:intron | 20.0% |
| !! | TAAAATAAGGAGAATATGAA+GGG | - | chr5_3:45962982-45963001 | None:intergenic | 20.0% |
| !! | ATAAAATAAGGAGAATATGA+AGG | - | chr5_3:45962983-45963002 | None:intergenic | 20.0% |
| !! | ACTGAAATGAAGATAAAATA+AGG | - | chr5_3:45962995-45963014 | None:intergenic | 20.0% |
| !! | GAAGATATTAAAGAATTGTA+AGG | + | chr5_3:45963114-45963133 | Msa0814140:CDS | 20.0% |
| !! | CAACATTCTCTTGATTATTT+TGG | - | chr5_3:45961412-45961431 | None:intergenic | 25.0% |
| ! | GTTAACATATACTCAATTTC+TGG | - | chr5_3:45961686-45961705 | None:intergenic | 25.0% |
| ! | TGCATCTAGATTATTACTTA+AGG | + | chr5_3:45961709-45961728 | Msa0814140:CDS | 25.0% |
| !!! | CTAAAGTATTTTCTATGGAT+CGG | - | chr5_3:45962203-45962222 | None:intergenic | 25.0% |
| !!! | GAACACTAAAGTATTTTCTA+TGG | - | chr5_3:45962208-45962227 | None:intergenic | 25.0% |
| !! | TGTGTTTAATTTCTTATAGC+AGG | + | chr5_3:45962426-45962445 | Msa0814140:intron | 25.0% |
| ! | ATAAAATGATAAGACACACA+TGG | + | chr5_3:45962583-45962602 | Msa0814140:intron | 25.0% |
| ! | TAAAATGATAAGACACACAT+GGG | + | chr5_3:45962584-45962603 | Msa0814140:intron | 25.0% |
| !! | TGCTTTTGTATACATAGTTT+AGG | + | chr5_3:45962917-45962936 | Msa0814140:intron | 25.0% |
| !! | GCTTTTGTATACATAGTTTA+GGG | + | chr5_3:45962918-45962937 | Msa0814140:intron | 25.0% |
| ! | AAGTCTTAATGAAATTGTAG+TGG | + | chr5_3:45963059-45963078 | Msa0814140:intron | 25.0% |
| !! | TACAAGATAACTCCAATTTT+AGG | + | chr5_3:45963331-45963350 | Msa0814140:CDS | 25.0% |
| !! | ACAAGATAACTCCAATTTTA+GGG | + | chr5_3:45963332-45963351 | Msa0814140:CDS | 25.0% |
| !! | CAACATTCTCTTGATTATTT+TGG | - | chr5_3:45961412-45961431 | None:intergenic | 25.0% |
| ! | GTTAACATATACTCAATTTC+TGG | - | chr5_3:45961686-45961705 | None:intergenic | 25.0% |
| ! | TGCATCTAGATTATTACTTA+AGG | + | chr5_3:45961709-45961728 | Msa0814140:CDS | 25.0% |
| !!! | CTAAAGTATTTTCTATGGAT+CGG | - | chr5_3:45962203-45962222 | None:intergenic | 25.0% |
| !!! | GAACACTAAAGTATTTTCTA+TGG | - | chr5_3:45962208-45962227 | None:intergenic | 25.0% |
| !! | TGTGTTTAATTTCTTATAGC+AGG | + | chr5_3:45962426-45962445 | Msa0814140:intron | 25.0% |
| ! | ATAAAATGATAAGACACACA+TGG | + | chr5_3:45962583-45962602 | Msa0814140:intron | 25.0% |
| ! | TAAAATGATAAGACACACAT+GGG | + | chr5_3:45962584-45962603 | Msa0814140:intron | 25.0% |
| !! | TGCTTTTGTATACATAGTTT+AGG | + | chr5_3:45962917-45962936 | Msa0814140:intron | 25.0% |
| !! | GCTTTTGTATACATAGTTTA+GGG | + | chr5_3:45962918-45962937 | Msa0814140:intron | 25.0% |
| ! | AAGTCTTAATGAAATTGTAG+TGG | + | chr5_3:45963059-45963078 | Msa0814140:intron | 25.0% |
| !! | TACAAGATAACTCCAATTTT+AGG | + | chr5_3:45963331-45963350 | Msa0814140:CDS | 25.0% |
| !! | ACAAGATAACTCCAATTTTA+GGG | + | chr5_3:45963332-45963351 | Msa0814140:CDS | 25.0% |
| ! | CTTAAATGTGTAGTTGACTT+AGG | + | chr5_3:45961500-45961519 | Msa0814140:CDS | 30.0% |
| GTTCAATGAATTTGAGTCAT+TGG | + | chr5_3:45961973-45961992 | Msa0814140:CDS | 30.0% | |
| TTCAACAAAATTGCATCTGT+TGG | - | chr5_3:45962157-45962176 | None:intergenic | 30.0% | |
| ! | AACAGATGCAATTTTGTTGA+AGG | + | chr5_3:45962156-45962175 | Msa0814140:CDS | 30.0% |
| TTTAACACTCACTCTCTTAT+AGG | + | chr5_3:45962526-45962545 | Msa0814140:intron | 30.0% | |
| ! | GTGTGTCTTATCATTTTATG+TGG | - | chr5_3:45962582-45962601 | None:intergenic | 30.0% |
| !!! | CTTTTTTAATAGGACAAGAG+TGG | - | chr5_3:45962829-45962848 | None:intergenic | 30.0% |
| !! | CACATTTTGGTACTAATGAT+CGG | + | chr5_3:45962956-45962975 | Msa0814140:intron | 30.0% |
| ATAGCAAAGAAAGGTAAAGA+AGG | + | chr5_3:45963142-45963161 | Msa0814140:CDS | 30.0% | |
| AAAGAAAGGTAAAGAAGGAA+AGG | + | chr5_3:45963147-45963166 | Msa0814140:CDS | 30.0% | |
| AAAGGTAGTTATCATAGACA+TGG | + | chr5_3:45963165-45963184 | Msa0814140:CDS | 30.0% | |
| ! | CTTCTTTGATATGTTGATGA+TGG | + | chr5_3:45963237-45963256 | Msa0814140:CDS | 30.0% |
| CAATTTAACCCATTCTTTCT+TGG | - | chr5_3:45963287-45963306 | None:intergenic | 30.0% | |
| ! | ATGGGTTAAATTGATATCCT+CGG | + | chr5_3:45963294-45963313 | Msa0814140:CDS | 30.0% |
| TATCTTGTAGTCACTAAAAC+CGG | - | chr5_3:45963320-45963339 | None:intergenic | 30.0% | |
| ! | CTTAAATGTGTAGTTGACTT+AGG | + | chr5_3:45961500-45961519 | Msa0814140:CDS | 30.0% |
| GTTCAATGAATTTGAGTCAT+TGG | + | chr5_3:45961973-45961992 | Msa0814140:CDS | 30.0% | |
| TTCAACAAAATTGCATCTGT+TGG | - | chr5_3:45962157-45962176 | None:intergenic | 30.0% | |
| ! | AACAGATGCAATTTTGTTGA+AGG | + | chr5_3:45962156-45962175 | Msa0814140:CDS | 30.0% |
| TTTAACACTCACTCTCTTAT+AGG | + | chr5_3:45962526-45962545 | Msa0814140:intron | 30.0% | |
| ! | GTGTGTCTTATCATTTTATG+TGG | - | chr5_3:45962582-45962601 | None:intergenic | 30.0% |
| !!! | CTTTTTTAATAGGACAAGAG+TGG | - | chr5_3:45962829-45962848 | None:intergenic | 30.0% |
| !! | CACATTTTGGTACTAATGAT+CGG | + | chr5_3:45962956-45962975 | Msa0814140:intron | 30.0% |
| ATAGCAAAGAAAGGTAAAGA+AGG | + | chr5_3:45963142-45963161 | Msa0814140:CDS | 30.0% | |
| AAAGAAAGGTAAAGAAGGAA+AGG | + | chr5_3:45963147-45963166 | Msa0814140:CDS | 30.0% | |
| AAAGGTAGTTATCATAGACA+TGG | + | chr5_3:45963165-45963184 | Msa0814140:CDS | 30.0% | |
| ! | CTTCTTTGATATGTTGATGA+TGG | + | chr5_3:45963237-45963256 | Msa0814140:CDS | 30.0% |
| CAATTTAACCCATTCTTTCT+TGG | - | chr5_3:45963287-45963306 | None:intergenic | 30.0% | |
| ! | ATGGGTTAAATTGATATCCT+CGG | + | chr5_3:45963294-45963313 | Msa0814140:CDS | 30.0% |
| TATCTTGTAGTCACTAAAAC+CGG | - | chr5_3:45963320-45963339 | None:intergenic | 30.0% | |
| TGAAAATGTGATTCCATACG+TGG | - | chr5_3:45961460-45961479 | None:intergenic | 35.0% | |
| !!! | GAAGAAATGAGTTTTGAGAG+TGG | - | chr5_3:45961563-45961582 | None:intergenic | 35.0% |
| !!! | AGATGCAAGGCTTTTTTGAA+GGG | - | chr5_3:45961598-45961617 | None:intergenic | 35.0% |
| !!! | TAGATGCAAGGCTTTTTTGA+AGG | - | chr5_3:45961599-45961618 | None:intergenic | 35.0% |
| CTTCTCTCAACAAAATGTTG+CGG | + | chr5_3:45961652-45961671 | Msa0814140:CDS | 35.0% | |
| ! | ACATCATTTGAAACGACACA+CGG | + | chr5_3:45961833-45961852 | Msa0814140:CDS | 35.0% |
| GCACTTCTCAACCAATAAAT+TGG | - | chr5_3:45961945-45961964 | None:intergenic | 35.0% | |
| ! | TTTATTGGTTGAGAAGTGCA+AGG | + | chr5_3:45961946-45961965 | Msa0814140:CDS | 35.0% |
| ! | TTATTGGTTGAGAAGTGCAA+GGG | + | chr5_3:45961947-45961966 | Msa0814140:CDS | 35.0% |
| ! | TTTGAGTCATTGGTTGATGT+TGG | + | chr5_3:45961983-45962002 | Msa0814140:CDS | 35.0% |
| TGCAAAATCATTCCCACAAA+TGG | + | chr5_3:45962036-45962055 | Msa0814140:CDS | 35.0% | |
| AGTGAGAAGCTAAGATATGT+TGG | + | chr5_3:45962106-45962125 | Msa0814140:CDS | 35.0% | |
| AGAAGCTAAGATATGTTGGT+GGG | + | chr5_3:45962110-45962129 | Msa0814140:CDS | 35.0% | |
| AACAAAATTGCATCTGTTGG+CGG | - | chr5_3:45962154-45962173 | None:intergenic | 35.0% | |
| TAAAGCATGTTATCACGAGA+TGG | + | chr5_3:45962246-45962265 | Msa0814140:intron | 35.0% | |
| ! | TTTTAATAGGACAAGAGTGG+AGG | - | chr5_3:45962826-45962845 | None:intergenic | 35.0% |
| CGATCATTAGTACCAAAATG+TGG | - | chr5_3:45962958-45962977 | None:intergenic | 35.0% | |
| AAGGATGCAATAGCAAAGAA+AGG | + | chr5_3:45963133-45963152 | Msa0814140:CDS | 35.0% | |
| ! | ATGGTGTTAGATTGTGAGAA+GGG | + | chr5_3:45963184-45963203 | Msa0814140:CDS | 35.0% |
| GAAGGGAGACAATAATGAAT+CGG | + | chr5_3:45963201-45963220 | Msa0814140:CDS | 35.0% | |
| AAGAGAGAACCAAGAAAGAA+TGG | + | chr5_3:45963275-45963294 | Msa0814140:CDS | 35.0% | |
| AGAGAGAACCAAGAAAGAAT+GGG | + | chr5_3:45963276-45963295 | Msa0814140:CDS | 35.0% | |
| ACAGCTCTTAACCCTAAAAT+TGG | - | chr5_3:45963346-45963365 | None:intergenic | 35.0% | |
| TGAAAATGTGATTCCATACG+TGG | - | chr5_3:45961460-45961479 | None:intergenic | 35.0% | |
| !!! | GAAGAAATGAGTTTTGAGAG+TGG | - | chr5_3:45961563-45961582 | None:intergenic | 35.0% |
| !!! | AGATGCAAGGCTTTTTTGAA+GGG | - | chr5_3:45961598-45961617 | None:intergenic | 35.0% |
| !!! | TAGATGCAAGGCTTTTTTGA+AGG | - | chr5_3:45961599-45961618 | None:intergenic | 35.0% |
| CTTCTCTCAACAAAATGTTG+CGG | + | chr5_3:45961652-45961671 | Msa0814140:CDS | 35.0% | |
| ! | ACATCATTTGAAACGACACA+CGG | + | chr5_3:45961833-45961852 | Msa0814140:CDS | 35.0% |
| GCACTTCTCAACCAATAAAT+TGG | - | chr5_3:45961945-45961964 | None:intergenic | 35.0% | |
| ! | TTTATTGGTTGAGAAGTGCA+AGG | + | chr5_3:45961946-45961965 | Msa0814140:CDS | 35.0% |
| ! | TTATTGGTTGAGAAGTGCAA+GGG | + | chr5_3:45961947-45961966 | Msa0814140:CDS | 35.0% |
| ! | TTTGAGTCATTGGTTGATGT+TGG | + | chr5_3:45961983-45962002 | Msa0814140:CDS | 35.0% |
| TGCAAAATCATTCCCACAAA+TGG | + | chr5_3:45962036-45962055 | Msa0814140:CDS | 35.0% | |
| AGTGAGAAGCTAAGATATGT+TGG | + | chr5_3:45962106-45962125 | Msa0814140:CDS | 35.0% | |
| AGAAGCTAAGATATGTTGGT+GGG | + | chr5_3:45962110-45962129 | Msa0814140:CDS | 35.0% | |
| AACAAAATTGCATCTGTTGG+CGG | - | chr5_3:45962154-45962173 | None:intergenic | 35.0% | |
| TAAAGCATGTTATCACGAGA+TGG | + | chr5_3:45962246-45962265 | Msa0814140:intron | 35.0% | |
| ! | TTTTAATAGGACAAGAGTGG+AGG | - | chr5_3:45962826-45962845 | None:intergenic | 35.0% |
| CGATCATTAGTACCAAAATG+TGG | - | chr5_3:45962958-45962977 | None:intergenic | 35.0% | |
| AAGGATGCAATAGCAAAGAA+AGG | + | chr5_3:45963133-45963152 | Msa0814140:CDS | 35.0% | |
| ! | ATGGTGTTAGATTGTGAGAA+GGG | + | chr5_3:45963184-45963203 | Msa0814140:CDS | 35.0% |
| GAAGGGAGACAATAATGAAT+CGG | + | chr5_3:45963201-45963220 | Msa0814140:CDS | 35.0% | |
| AAGAGAGAACCAAGAAAGAA+TGG | + | chr5_3:45963275-45963294 | Msa0814140:CDS | 35.0% | |
| AGAGAGAACCAAGAAAGAAT+GGG | + | chr5_3:45963276-45963295 | Msa0814140:CDS | 35.0% | |
| ACAGCTCTTAACCCTAAAAT+TGG | - | chr5_3:45963346-45963365 | None:intergenic | 35.0% | |
| ! | TGTTGCTTCCAATTTGCTCA+AGG | + | chr5_3:45961427-45961446 | Msa0814140:CDS | 40.0% |
| CCATGGTTGTGTATGATATC+TGG | - | chr5_3:45961530-45961549 | None:intergenic | 40.0% | |
| CCAGATATCATACACAACCA+TGG | + | chr5_3:45961527-45961546 | Msa0814140:CDS | 40.0% | |
| !!! | AATGAGTTTTGAGAGTGGCA+TGG | - | chr5_3:45961558-45961577 | None:intergenic | 40.0% |
| CACATAGAGAATTGATGCCA+CGG | - | chr5_3:45961794-45961813 | None:intergenic | 40.0% | |
| ! | CATCATTTGAAACGACACAC+GGG | + | chr5_3:45961834-45961853 | Msa0814140:CDS | 40.0% |
| ACACAATGCACTCCATTTGT+GGG | - | chr5_3:45962051-45962070 | None:intergenic | 40.0% | |
| AACACAATGCACTCCATTTG+TGG | - | chr5_3:45962052-45962071 | None:intergenic | 40.0% | |
| GATCTCCCACATATTGTTGA+TGG | + | chr5_3:45962073-45962092 | Msa0814140:CDS | 40.0% | |
| GCAAGCCATCAACAATATGT+GGG | - | chr5_3:45962081-45962100 | None:intergenic | 40.0% | |
| TGCAAGCCATCAACAATATG+TGG | - | chr5_3:45962082-45962101 | None:intergenic | 40.0% | |
| !! | CATATTGTTGATGGCTTGCA+AGG | + | chr5_3:45962082-45962101 | Msa0814140:CDS | 40.0% |
| GAGAAGCTAAGATATGTTGG+TGG | + | chr5_3:45962109-45962128 | Msa0814140:CDS | 40.0% | |
| GAAGCTAAGATATGTTGGTG+GGG | + | chr5_3:45962111-45962130 | Msa0814140:CDS | 40.0% | |
| CATGTTATCACGAGATGGTA+AGG | + | chr5_3:45962251-45962270 | Msa0814140:intron | 40.0% | |
| CACGAGATGGTAAGGTTTAA+TGG | + | chr5_3:45962259-45962278 | Msa0814140:intron | 40.0% | |
| AACGAGTGGTACAATGGTAT+GGG | - | chr5_3:45962677-45962696 | None:intergenic | 40.0% | |
| AAACGAGTGGTACAATGGTA+TGG | - | chr5_3:45962678-45962697 | None:intergenic | 40.0% | |
| TACCATTGTACCACTCGTTT+AGG | + | chr5_3:45962678-45962697 | Msa0814140:intron | 40.0% | |
| !! | ACCACTCGTTTAGGAGTATT+AGG | + | chr5_3:45962687-45962706 | Msa0814140:intron | 40.0% |
| TCCTAATACTCCTAAACGAG+TGG | - | chr5_3:45962691-45962710 | None:intergenic | 40.0% | |
| TAAAGGGAGAACGCTAAGAT+AGG | - | chr5_3:45962731-45962750 | None:intergenic | 40.0% | |
| TCTTAGCGTTCTCCCTTTAT+TGG | + | chr5_3:45962732-45962751 | Msa0814140:intron | 40.0% | |
| !! | TGTAGTGGATATTGCATGAC+TGG | + | chr5_3:45963074-45963093 | Msa0814140:intron | 40.0% |
| ! | CATGGTGTTAGATTGTGAGA+AGG | + | chr5_3:45963183-45963202 | Msa0814140:CDS | 40.0% |
| !! | TTGATGATGGTAACACTCAC+TGG | + | chr5_3:45963250-45963269 | Msa0814140:CDS | 40.0% |
| GTTAAATTGATATCCTCGGC+CGG | + | chr5_3:45963298-45963317 | Msa0814140:CDS | 40.0% | |
| ! | TGTTGCTTCCAATTTGCTCA+AGG | + | chr5_3:45961427-45961446 | Msa0814140:CDS | 40.0% |
| CCATGGTTGTGTATGATATC+TGG | - | chr5_3:45961530-45961549 | None:intergenic | 40.0% | |
| CCAGATATCATACACAACCA+TGG | + | chr5_3:45961527-45961546 | Msa0814140:CDS | 40.0% | |
| !!! | AATGAGTTTTGAGAGTGGCA+TGG | - | chr5_3:45961558-45961577 | None:intergenic | 40.0% |
| CACATAGAGAATTGATGCCA+CGG | - | chr5_3:45961794-45961813 | None:intergenic | 40.0% | |
| ! | CATCATTTGAAACGACACAC+GGG | + | chr5_3:45961834-45961853 | Msa0814140:CDS | 40.0% |
| ACACAATGCACTCCATTTGT+GGG | - | chr5_3:45962051-45962070 | None:intergenic | 40.0% | |
| AACACAATGCACTCCATTTG+TGG | - | chr5_3:45962052-45962071 | None:intergenic | 40.0% | |
| GATCTCCCACATATTGTTGA+TGG | + | chr5_3:45962073-45962092 | Msa0814140:CDS | 40.0% | |
| GCAAGCCATCAACAATATGT+GGG | - | chr5_3:45962081-45962100 | None:intergenic | 40.0% | |
| TGCAAGCCATCAACAATATG+TGG | - | chr5_3:45962082-45962101 | None:intergenic | 40.0% | |
| !! | CATATTGTTGATGGCTTGCA+AGG | + | chr5_3:45962082-45962101 | Msa0814140:CDS | 40.0% |
| GAGAAGCTAAGATATGTTGG+TGG | + | chr5_3:45962109-45962128 | Msa0814140:CDS | 40.0% | |
| GAAGCTAAGATATGTTGGTG+GGG | + | chr5_3:45962111-45962130 | Msa0814140:CDS | 40.0% | |
| CATGTTATCACGAGATGGTA+AGG | + | chr5_3:45962251-45962270 | Msa0814140:intron | 40.0% | |
| CACGAGATGGTAAGGTTTAA+TGG | + | chr5_3:45962259-45962278 | Msa0814140:intron | 40.0% | |
| AACGAGTGGTACAATGGTAT+GGG | - | chr5_3:45962677-45962696 | None:intergenic | 40.0% | |
| AAACGAGTGGTACAATGGTA+TGG | - | chr5_3:45962678-45962697 | None:intergenic | 40.0% | |
| TACCATTGTACCACTCGTTT+AGG | + | chr5_3:45962678-45962697 | Msa0814140:intron | 40.0% | |
| !! | ACCACTCGTTTAGGAGTATT+AGG | + | chr5_3:45962687-45962706 | Msa0814140:intron | 40.0% |
| TCCTAATACTCCTAAACGAG+TGG | - | chr5_3:45962691-45962710 | None:intergenic | 40.0% | |
| TAAAGGGAGAACGCTAAGAT+AGG | - | chr5_3:45962731-45962750 | None:intergenic | 40.0% | |
| TCTTAGCGTTCTCCCTTTAT+TGG | + | chr5_3:45962732-45962751 | Msa0814140:intron | 40.0% | |
| !! | TGTAGTGGATATTGCATGAC+TGG | + | chr5_3:45963074-45963093 | Msa0814140:intron | 40.0% |
| ! | CATGGTGTTAGATTGTGAGA+AGG | + | chr5_3:45963183-45963202 | Msa0814140:CDS | 40.0% |
| !! | TTGATGATGGTAACACTCAC+TGG | + | chr5_3:45963250-45963269 | Msa0814140:CDS | 40.0% |
| GTTAAATTGATATCCTCGGC+CGG | + | chr5_3:45963298-45963317 | Msa0814140:CDS | 40.0% | |
| ! | GCTTTGAGCCTTGAGCAAAT+TGG | - | chr5_3:45961438-45961457 | None:intergenic | 45.0% |
| ! | AGAGTGGCATGGATTTTCCA+TGG | - | chr5_3:45961547-45961566 | None:intergenic | 45.0% |
| !!! | GGCTTTTTTGAAGGGTGGAT+TGG | - | chr5_3:45961590-45961609 | None:intergenic | 45.0% |
| !!! | TGCAAGGCTTTTTTGAAGGG+TGG | - | chr5_3:45961595-45961614 | None:intergenic | 45.0% |
| ATGCGAATCATGACTCACTC+TGG | + | chr5_3:45961626-45961645 | Msa0814140:CDS | 45.0% | |
| !! | ACGAATGGTGTCACACTCAT+TGG | - | chr5_3:45961740-45961759 | None:intergenic | 45.0% |
| ACCCAGTTATGATGAATCCG+TGG | + | chr5_3:45961774-45961793 | Msa0814140:CDS | 45.0% | |
| GCCACGGATTCATCATAACT+GGG | - | chr5_3:45961778-45961797 | None:intergenic | 45.0% | |
| TGCCACGGATTCATCATAAC+TGG | - | chr5_3:45961779-45961798 | None:intergenic | 45.0% | |
| CGTGGCATCAATTCTCTATG+TGG | + | chr5_3:45961792-45961811 | Msa0814140:CDS | 45.0% | |
| GACACACGGGATGTTGTTAT+GGG | + | chr5_3:45961847-45961866 | Msa0814140:CDS | 45.0% | |
| ! | GAGTCATTGGTTGATGTTGG+AGG | + | chr5_3:45961986-45962005 | Msa0814140:CDS | 45.0% |
| ! | TCATTGGTTGATGTTGGAGG+AGG | + | chr5_3:45961989-45962008 | Msa0814140:CDS | 45.0% |
| TTGATGTTGGAGGAGGAACA+GGG | + | chr5_3:45961996-45962015 | Msa0814140:CDS | 45.0% | |
| CTCCTAAACGAGTGGTACAA+TGG | - | chr5_3:45962683-45962702 | None:intergenic | 45.0% | |
| ! | GCTTTGAGCCTTGAGCAAAT+TGG | - | chr5_3:45961438-45961457 | None:intergenic | 45.0% |
| ! | AGAGTGGCATGGATTTTCCA+TGG | - | chr5_3:45961547-45961566 | None:intergenic | 45.0% |
| !!! | GGCTTTTTTGAAGGGTGGAT+TGG | - | chr5_3:45961590-45961609 | None:intergenic | 45.0% |
| !!! | TGCAAGGCTTTTTTGAAGGG+TGG | - | chr5_3:45961595-45961614 | None:intergenic | 45.0% |
| ATGCGAATCATGACTCACTC+TGG | + | chr5_3:45961626-45961645 | Msa0814140:CDS | 45.0% | |
| !! | ACGAATGGTGTCACACTCAT+TGG | - | chr5_3:45961740-45961759 | None:intergenic | 45.0% |
| ACCCAGTTATGATGAATCCG+TGG | + | chr5_3:45961774-45961793 | Msa0814140:CDS | 45.0% | |
| GCCACGGATTCATCATAACT+GGG | - | chr5_3:45961778-45961797 | None:intergenic | 45.0% | |
| TGCCACGGATTCATCATAAC+TGG | - | chr5_3:45961779-45961798 | None:intergenic | 45.0% | |
| CGTGGCATCAATTCTCTATG+TGG | + | chr5_3:45961792-45961811 | Msa0814140:CDS | 45.0% | |
| GACACACGGGATGTTGTTAT+GGG | + | chr5_3:45961847-45961866 | Msa0814140:CDS | 45.0% | |
| ! | GAGTCATTGGTTGATGTTGG+AGG | + | chr5_3:45961986-45962005 | Msa0814140:CDS | 45.0% |
| ! | TCATTGGTTGATGTTGGAGG+AGG | + | chr5_3:45961989-45962008 | Msa0814140:CDS | 45.0% |
| TTGATGTTGGAGGAGGAACA+GGG | + | chr5_3:45961996-45962015 | Msa0814140:CDS | 45.0% | |
| CTCCTAAACGAGTGGTACAA+TGG | - | chr5_3:45962683-45962702 | None:intergenic | 45.0% | |
| !!! | TTTATTTTATTTTTTTGTAA+TGG | + | chr5_3:45962364-45962383 | Msa0814140:intron | 5.0% |
| !!! | TTATTTTATTTTTTTGTAAT+GGG | + | chr5_3:45962365-45962384 | Msa0814140:intron | 5.0% |
| !!! | TTTATTTTATTTTTTTGTAA+TGG | + | chr5_3:45962364-45962383 | Msa0814140:intron | 5.0% |
| !!! | TTATTTTATTTTTTTGTAAT+GGG | + | chr5_3:45962365-45962384 | Msa0814140:intron | 5.0% |
| TCAAGGCTCAAAGCCACGTA+TGG | + | chr5_3:45961444-45961463 | Msa0814140:CDS | 50.0% | |
| CGCATCAAGCGATAGATGCA+AGG | - | chr5_3:45961611-45961630 | None:intergenic | 50.0% | |
| CGACACACGGGATGTTGTTA+TGG | + | chr5_3:45961846-45961865 | Msa0814140:CDS | 50.0% | |
| GTTGATGTTGGAGGAGGAAC+AGG | + | chr5_3:45961995-45962014 | Msa0814140:CDS | 50.0% | |
| AGCGTTCTCCCTTTATTGGC+CGG | + | chr5_3:45962736-45962755 | Msa0814140:intron | 50.0% | |
| ACCCGTTTATAGGGTCTAGC+CGG | - | chr5_3:45962758-45962777 | None:intergenic | 50.0% | |
| ACCCTATAAACGGGTGGTTC+AGG | + | chr5_3:45962763-45962782 | Msa0814140:intron | 50.0% | |
| GCCTGAACCACCCGTTTATA+GGG | - | chr5_3:45962767-45962786 | None:intergenic | 50.0% | |
| AGCCTGAACCACCCGTTTAT+AGG | - | chr5_3:45962768-45962787 | None:intergenic | 50.0% | |
| TCAAGGCTCAAAGCCACGTA+TGG | + | chr5_3:45961444-45961463 | Msa0814140:CDS | 50.0% | |
| CGCATCAAGCGATAGATGCA+AGG | - | chr5_3:45961611-45961630 | None:intergenic | 50.0% | |
| CGACACACGGGATGTTGTTA+TGG | + | chr5_3:45961846-45961865 | Msa0814140:CDS | 50.0% | |
| GTTGATGTTGGAGGAGGAAC+AGG | + | chr5_3:45961995-45962014 | Msa0814140:CDS | 50.0% | |
| AGCGTTCTCCCTTTATTGGC+CGG | + | chr5_3:45962736-45962755 | Msa0814140:intron | 50.0% | |
| ACCCGTTTATAGGGTCTAGC+CGG | - | chr5_3:45962758-45962777 | None:intergenic | 50.0% | |
| ACCCTATAAACGGGTGGTTC+AGG | + | chr5_3:45962763-45962782 | Msa0814140:intron | 50.0% | |
| GCCTGAACCACCCGTTTATA+GGG | - | chr5_3:45962767-45962786 | None:intergenic | 50.0% | |
| AGCCTGAACCACCCGTTTAT+AGG | - | chr5_3:45962768-45962787 | None:intergenic | 50.0% | |
| ! | TCGAGCATCGCGTACACGAA+TGG | - | chr5_3:45961755-45961774 | None:intergenic | 55.0% |
| TGGAGGAGGAACAGGGACTA+TGG | + | chr5_3:45962003-45962022 | Msa0814140:CDS | 55.0% | |
| GGGTCTAGCCGGCCAATAAA+GGG | - | chr5_3:45962747-45962766 | None:intergenic | 55.0% | |
| AGGGTCTAGCCGGCCAATAA+AGG | - | chr5_3:45962748-45962767 | None:intergenic | 55.0% | |
| GGCCGGCTAGACCCTATAAA+CGG | + | chr5_3:45962753-45962772 | Msa0814140:intron | 55.0% | |
| GCCGGCTAGACCCTATAAAC+GGG | + | chr5_3:45962754-45962773 | Msa0814140:intron | 55.0% | |
| GGCTAGACCCTATAAACGGG+TGG | + | chr5_3:45962757-45962776 | Msa0814140:intron | 55.0% | |
| GTAGTCACTAAAACCGGCCG+AGG | - | chr5_3:45963314-45963333 | None:intergenic | 55.0% | |
| ! | TCGAGCATCGCGTACACGAA+TGG | - | chr5_3:45961755-45961774 | None:intergenic | 55.0% |
| TGGAGGAGGAACAGGGACTA+TGG | + | chr5_3:45962003-45962022 | Msa0814140:CDS | 55.0% | |
| GGGTCTAGCCGGCCAATAAA+GGG | - | chr5_3:45962747-45962766 | None:intergenic | 55.0% | |
| AGGGTCTAGCCGGCCAATAA+AGG | - | chr5_3:45962748-45962767 | None:intergenic | 55.0% | |
| GGCCGGCTAGACCCTATAAA+CGG | + | chr5_3:45962753-45962772 | Msa0814140:intron | 55.0% | |
| GCCGGCTAGACCCTATAAAC+GGG | + | chr5_3:45962754-45962773 | Msa0814140:intron | 55.0% | |
| GGCTAGACCCTATAAACGGG+TGG | + | chr5_3:45962757-45962776 | Msa0814140:intron | 55.0% | |
| GTAGTCACTAAAACCGGCCG+AGG | - | chr5_3:45963314-45963333 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 45961401 | 45963393 | 45961401 | ID=Msa0814140;Name=Msa0814140 |
| chr5_3 | mRNA | 45961401 | 45963393 | 45961401 | ID=Msa0814140-mRNA-1;Parent=Msa0814140;Name=Msa0814140-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|363 |
| chr5_3 | exon | 45961401 | 45962177 | 45961401 | ID=Msa0814140-mRNA-1:exon:13952;Parent=Msa0814140-mRNA-1 |
| chr5_3 | exon | 45963079 | 45963393 | 45963079 | ID=Msa0814140-mRNA-1:exon:13953;Parent=Msa0814140-mRNA-1 |
| chr5_3 | CDS | 45961401 | 45962177 | 45961401 | ID=Msa0814140-mRNA-1:cds;Parent=Msa0814140-mRNA-1 |
| chr5_3 | CDS | 45963079 | 45963393 | 45963079 | ID=Msa0814140-mRNA-1:cds;Parent=Msa0814140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
