Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736620 | XP_003616200.1 | 94.686 | 207 | 6 | 1 | 1 | 207 | 1 | 202 | 1.94e-132 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736620 | G7KFX1 | 94.686 | 207 | 6 | 1 | 1 | 207 | 1 | 202 | 9.27e-133 | 380 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0736620 | Msa0807530 | 0.830207 | 3.345121e-55 | -8.615850e-47 |
| Msa0736620 | Msa0856130 | 0.953996 | 7.966465e-112 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736620 | MtrunA17_Chr5g0434081 | 94.686 | 207 | 6 | 1 | 1 | 207 | 1 | 202 | 1.79e-136 | 380 |
| Msa0736620 | MtrunA17_Chr5g0443491 | 63.905 | 169 | 58 | 1 | 42 | 207 | 64 | 232 | 3.79e-69 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736620 | AT5G16550.1 | 43.056 | 216 | 104 | 4 | 5 | 207 | 31 | 240 | 2.10e-47 | 156 |
Find 69 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATTGTGTTACACAATTA+AGG | 0.154601 | 5_1:-53202968 | Msa0736620:three_prime_UTR |
| ATTAATAACAGTTATATTAA+AGG | 0.180357 | 5_1:+53202691 | None:intergenic |
| TACCTTTATGCTTCTCCTTC+TGG | 0.191402 | 5_1:-53204571 | Msa0736620:CDS |
| CAATTTCAACAGTTGTCTTT+TGG | 0.213908 | 5_1:-53204422 | Msa0736620:CDS |
| AACTGTTGAAATTGCAAATA+TGG | 0.243964 | 5_1:+53204431 | None:intergenic |
| GGTGGTGGCCGGAGGATTCT+TGG | 0.250332 | 5_1:-53204505 | Msa0736620:CDS |
| ACCAAACAGTGAGTGGGATT+TGG | 0.280277 | 5_1:+53203058 | None:intergenic |
| TTCAAATTATTCTGCTGCTT+GGG | 0.313188 | 5_1:-53203203 | Msa0736620:CDS |
| TCGACCTCTCCTTCTCATTT+CGG | 0.313356 | 5_1:-53206218 | Msa0736620:intron |
| CCAAACAGTGAGTGGGATTT+GGG | 0.313820 | 5_1:+53203059 | None:intergenic |
| CTAGAAGCTTCGGGAATATA+AGG | 0.325702 | 5_1:+53206289 | None:intergenic |
| ATGTTAATACATTGGCCTAT+TGG | 0.334828 | 5_1:-53202670 | Msa0736620:three_prime_UTR |
| CCCAAATCCCACTCACTGTT+TGG | 0.345488 | 5_1:-53203059 | Msa0736620:three_prime_UTR |
| TTAGTGACAGCAATATATAT+TGG | 0.354686 | 5_1:-53204468 | Msa0736620:CDS |
| TTGAGTTCTTCGATCTGAAC+TGG | 0.371062 | 5_1:-53206460 | Msa0736620:five_prime_UTR |
| TTCATTTCTTTGGTGGTGGC+CGG | 0.390732 | 5_1:-53204516 | Msa0736620:CDS |
| GTGTAGTTTCTAGAAGCTTC+GGG | 0.394632 | 5_1:+53206280 | None:intergenic |
| ATTGCTCTTGTTGCCTTGAC+AGG | 0.399432 | 5_1:-53204600 | Msa0736620:CDS |
| AGTGTAGTTTCTAGAAGCTT+CGG | 0.407995 | 5_1:+53206279 | None:intergenic |
| ACCTGTGATCAGCTCCTAAT+CGG | 0.414543 | 5_1:+53203153 | None:intergenic |
| GTATTGTGTTACACAATTAA+GGG | 0.422615 | 5_1:-53202967 | Msa0736620:three_prime_UTR |
| CACTCACTGTTTGGTTTCGA+TGG | 0.430823 | 5_1:-53203050 | Msa0736620:three_prime_UTR |
| TTCACACAAACATTCCGATT+AGG | 0.433053 | 5_1:-53203167 | Msa0736620:exon |
| CAAAAGCTTCTTCTGTTGAC+TGG | 0.440439 | 5_1:-53203088 | Msa0736620:three_prime_UTR |
| TTTCAAATTATTCTGCTGCT+TGG | 0.446312 | 5_1:-53203204 | Msa0736620:CDS |
| AACCTTCTTATACTGCTAAT+CGG | 0.456832 | 5_1:-53206330 | Msa0736620:CDS |
| ATAATACAAGCAGGATGGGT+TGG | 0.474448 | 5_1:-53203307 | Msa0736620:intron |
| AACCAGAAGGAGAAGCATAA+AGG | 0.481508 | 5_1:+53204569 | None:intergenic |
| GTTATAATATGATCCTGCTC+TGG | 0.487746 | 5_1:+53202731 | None:intergenic |
| AATGGCATGTTCGAACCAAT+AGG | 0.489203 | 5_1:+53202655 | None:intergenic |
| ATCCGATTAGCAGTATAAGA+AGG | 0.498829 | 5_1:+53206328 | None:intergenic |
| GAAGGAGAAGCATAAAGGTA+AGG | 0.513668 | 5_1:+53204574 | None:intergenic |
| TCCGATTAGGAGCTGATCAC+AGG | 0.513825 | 5_1:-53203154 | Msa0736620:exon |
| TGTTATTAATGTTAATACAT+TGG | 0.514048 | 5_1:-53202678 | Msa0736620:three_prime_UTR |
| AATCGGAATGTTTGTGTGAA+AGG | 0.516233 | 5_1:+53203170 | None:intergenic |
| TTGATAGCTAGCAAGAGCCT+TGG | 0.537563 | 5_1:-53203265 | Msa0736620:CDS |
| AATGAGAAGGAGAGGTCGAA+GGG | 0.543624 | 5_1:+53206222 | None:intergenic |
| GAGATGGCAGAGAAAGAAAA+CGG | 0.543810 | 5_1:-53206436 | Msa0736620:CDS |
| ACACTCGCCGTGTTCTTCGC+TGG | 0.544785 | 5_1:-53206261 | Msa0736620:CDS |
| GTGGCTATTCTGATAACTGC+AGG | 0.545502 | 5_1:-53204393 | Msa0736620:intron |
| TACATGTGGATGCTGTGAAA+TGG | 0.547387 | 5_1:-53203111 | Msa0736620:three_prime_UTR |
| AATGAAAAGAGAGACAATGA+TGG | 0.559549 | 5_1:+53204533 | None:intergenic |
| ATTTCTTTGGTGGTGGCCGG+AGG | 0.560839 | 5_1:-53204513 | Msa0736620:CDS |
| GTTCTTCGCTGGTCTCGTCA+AGG | 0.561562 | 5_1:-53206250 | Msa0736620:CDS |
| TTCGATCTGAACTGGAGAGA+TGG | 0.561622 | 5_1:-53206452 | Msa0736620:exon |
| TCAAATTATTCTGCTGCTTG+GGG | 0.563978 | 5_1:-53203202 | Msa0736620:CDS |
| TATTCATTTGAAACCAGAGC+AGG | 0.565831 | 5_1:-53202744 | Msa0736620:three_prime_UTR |
| GAAAAGAGCCAAGAATCCTC+CGG | 0.567366 | 5_1:+53204497 | None:intergenic |
| TGTTAGCCTACGTAATTACC+TGG | 0.568456 | 5_1:-53202921 | Msa0736620:three_prime_UTR |
| CATCGAAACCAAACAGTGAG+TGG | 0.576080 | 5_1:+53203051 | None:intergenic |
| AAATGAGAAGGAGAGGTCGA+AGG | 0.579200 | 5_1:+53206221 | None:intergenic |
| AGCTTAAGTTGTACAATACC+AGG | 0.580332 | 5_1:+53202903 | None:intergenic |
| CATTGATAGTTGCAACCAGA+AGG | 0.586472 | 5_1:+53204556 | None:intergenic |
| GGATCATATTATAACACGAC+AGG | 0.594084 | 5_1:-53202723 | Msa0736620:three_prime_UTR |
| AATGTTTGTGTGAAAGGTTG+CGG | 0.597552 | 5_1:+53203176 | None:intergenic |
| AAAGGTAAGGAGTCCTGTCA+AGG | 0.607151 | 5_1:+53204587 | None:intergenic |
| GCAGTGTTGATAAAATATGC+TGG | 0.619778 | 5_1:-53202996 | Msa0736620:three_prime_UTR |
| ATCGAAACCAAACAGTGAGT+GGG | 0.619872 | 5_1:+53203052 | None:intergenic |
| GACGAGACCAGCGAAGAACA+CGG | 0.623295 | 5_1:+53206254 | None:intergenic |
| TGCAGTTATCAGAATAGCCA+CGG | 0.625555 | 5_1:+53204395 | None:intergenic |
| GTAACCGAACCGAAATGAGA+AGG | 0.629050 | 5_1:+53206209 | None:intergenic |
| AAACACTCATTAAGCGTGAG+TGG | 0.633113 | 5_1:-53203235 | Msa0736620:CDS |
| TGCATGAAATTGCATTTGTG+TGG | 0.640656 | 5_1:-53202880 | Msa0736620:three_prime_UTR |
| CGAACCGAAATGAGAAGGAG+AGG | 0.653048 | 5_1:+53206214 | None:intergenic |
| GGGAATATAAGGAGAGAGTG+AGG | 0.663880 | 5_1:+53206300 | None:intergenic |
| CTTATGTGTGAAGTTACATG+TGG | 0.666580 | 5_1:-53203125 | Msa0736620:three_prime_UTR |
| ATTAGGAGCTGATCACAGGT+AGG | 0.671400 | 5_1:-53203150 | Msa0736620:exon |
| ACAATACCAGGTAATTACGT+AGG | 0.690583 | 5_1:+53202915 | None:intergenic |
| TGATGTACTTGTATGAACGA+AGG | 0.757731 | 5_1:-53202827 | Msa0736620:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATATGATTTTGTTT+TGG | + | chr5_1:53203239-53203258 | None:intergenic | 10.0% |
| !! | TAACTTTAAATTTATTAAAC+TGG | + | chr5_1:53205586-53205605 | None:intergenic | 10.0% |
| !! | ATTAATAACAGTTATATTAA+AGG | + | chr5_1:53206488-53206507 | None:intergenic | 10.0% |
| !!! | TAAATTAGTAATGTTTTTCA+GGG | - | chr5_1:53203262-53203281 | Msa0736620:CDS | 15.0% |
| !! | CATTCAAAATTATGAAATTA+TGG | + | chr5_1:53203703-53203722 | None:intergenic | 15.0% |
| !! | AAAAATATATTGTCATGTTA+TGG | + | chr5_1:53205724-53205743 | None:intergenic | 15.0% |
| !! | TGTTATTAATGTTAATACAT+TGG | - | chr5_1:53206498-53206517 | Msa0736620:five_prime_UTR | 15.0% |
| !!! | CTAAATTAGTAATGTTTTTC+AGG | - | chr5_1:53203261-53203280 | Msa0736620:CDS | 20.0% |
| !! | TGTTAATCATGTTAAAAATG+TGG | - | chr5_1:53203504-53203523 | Msa0736620:intron | 20.0% |
| !! | CTTCTATATTTATTCTATGT+GGG | - | chr5_1:53204198-53204217 | Msa0736620:intron | 20.0% |
| !!! | GATTGCATTTTATATCATTT+CGG | - | chr5_1:53204317-53204336 | Msa0736620:intron | 20.0% |
| !! | CAATTAAAGAGAAAAGAAAA+AGG | + | chr5_1:53204827-53204846 | None:intergenic | 20.0% |
| !! | AATGACATGTAGATATAAAT+CGG | - | chr5_1:53204915-53204934 | Msa0736620:intron | 20.0% |
| !!! | AATTTTTTCTGATCATTGAT+TGG | - | chr5_1:53204998-53205017 | Msa0736620:intron | 20.0% |
| !!! | ATTTTTTCTGATCATTGATT+GGG | - | chr5_1:53204999-53205018 | Msa0736620:intron | 20.0% |
| !!! | TTTTTGTTTTCTCCTTTTTT+TGG | - | chr5_1:53205817-53205836 | Msa0736620:intron | 20.0% |
| !! | TTAATATTTTCTCTCTAGTC+AGG | + | chr5_1:53203654-53203673 | None:intergenic | 25.0% |
| ! | ACTAATTATTACATGCTTCA+CGG | + | chr5_1:53204028-53204047 | None:intergenic | 25.0% |
| ! | GCTTCTATATTTATTCTATG+TGG | - | chr5_1:53204197-53204216 | Msa0736620:intron | 25.0% |
| !! | TGCTGATTACACTAAAAATA+TGG | + | chr5_1:53204474-53204493 | None:intergenic | 25.0% |
| ! | AATCAGCATATCAAGAAAAT+AGG | - | chr5_1:53204486-53204505 | Msa0736620:CDS | 25.0% |
| ! | ATCAGCATATCAAGAAAATA+GGG | - | chr5_1:53204487-53204506 | Msa0736620:CDS | 25.0% |
| !!! | TCCTTTTAGTTGAATGTTTA+TGG | - | chr5_1:53204523-53204542 | Msa0736620:CDS | 25.0% |
| ! | ACCATAAACATTCAACTAAA+AGG | + | chr5_1:53204527-53204546 | None:intergenic | 25.0% |
| !! | GTTTCTTTTCAAATTTCTTC+AGG | - | chr5_1:53204545-53204564 | Msa0736620:CDS | 25.0% |
| !!! | TTTTCAAATTTCTTCAGGTT+GGG | - | chr5_1:53204550-53204569 | Msa0736620:CDS | 25.0% |
| ! | TTAGTGACAGCAATATATAT+TGG | - | chr5_1:53204708-53204727 | Msa0736620:intron | 25.0% |
| ! | AACTGTTGAAATTGCAAATA+TGG | + | chr5_1:53204748-53204767 | None:intergenic | 25.0% |
| ! | TAAAGAGAAAAGAAAAAGGT+TGG | + | chr5_1:53204823-53204842 | None:intergenic | 25.0% |
| !!! | TTGCTTTTTTTTATGAAGAC+TGG | - | chr5_1:53204975-53204994 | Msa0736620:intron | 25.0% |
| ! | ATTTCCTAATGTGCATTATT+AGG | + | chr5_1:53205359-53205378 | None:intergenic | 25.0% |
| ! | AACATGAAAATAATACAAGC+AGG | - | chr5_1:53205860-53205879 | Msa0736620:intron | 25.0% |
| ! | TGTATTGTGTTACACAATTA+AGG | - | chr5_1:53206208-53206227 | Msa0736620:intron | 25.0% |
| ! | GTATTGTGTTACACAATTAA+GGG | - | chr5_1:53206209-53206228 | Msa0736620:intron | 25.0% |
| !!! | CACATTTTTTTTCGTTATGA+TGG | + | chr5_1:53206401-53206420 | None:intergenic | 25.0% |
| ! | CATCATAACGAAAAAAAATG+TGG | - | chr5_1:53206399-53206418 | Msa0736620:CDS | 25.0% |
| ! | GAAAAAAAATGTGGAAACAT+CGG | - | chr5_1:53206408-53206427 | Msa0736620:CDS | 25.0% |
| ! | AAAAAAAATGTGGAAACATC+GGG | - | chr5_1:53206409-53206428 | Msa0736620:CDS | 25.0% |
| ! | GAACTCAATTTTCAGTTAGT+TGG | + | chr5_1:53202704-53202723 | None:intergenic | 30.0% |
| AACCTTCTTATACTGCTAAT+CGG | - | chr5_1:53202846-53202865 | Msa0736620:three_prime_UTR | 30.0% | |
| TATTAACAATCGTTGTTCTG+AGG | - | chr5_1:53203148-53203167 | Msa0736620:three_prime_UTR | 30.0% | |
| AAATTTCACCCGAATAAGTT+GGG | + | chr5_1:53203377-53203396 | None:intergenic | 30.0% | |
| AAAATTTCACCCGAATAAGT+TGG | + | chr5_1:53203378-53203397 | None:intergenic | 30.0% | |
| ! | AACTTATTCGGGTGAAATTT+TGG | - | chr5_1:53203377-53203396 | Msa0736620:intron | 30.0% |
| CTACTTGACCAACAAAAAAA+GGG | - | chr5_1:53203408-53203427 | Msa0736620:intron | 30.0% | |
| TACTTGACCAACAAAAAAAG+GGG | - | chr5_1:53203409-53203428 | Msa0736620:intron | 30.0% | |
| ATTAACTCAAGTGCATGATT+GGG | - | chr5_1:53203575-53203594 | Msa0736620:intron | 30.0% | |
| !! | TTTTGGAGGGAAAAAAATAG+TGG | - | chr5_1:53203836-53203855 | Msa0736620:intron | 30.0% |
| TGTGATCATTGATATTGTAG+AGG | - | chr5_1:53203889-53203908 | Msa0736620:intron | 30.0% | |
| !! | TCAGGATTTTAATAAAGGTC+CGG | + | chr5_1:53203996-53204015 | None:intergenic | 30.0% |
| !! | GCACATCAGGATTTTAATAA+AGG | + | chr5_1:53204001-53204020 | None:intergenic | 30.0% |
| TGATAGTCAAATATTCACTG+AGG | + | chr5_1:53204060-53204079 | None:intergenic | 30.0% | |
| TAACTGCAATGTAACAGAAT+TGG | + | chr5_1:53204139-53204158 | None:intergenic | 30.0% | |
| TTAGTTAGTTAGTTACAGAG+TGG | - | chr5_1:53204160-53204179 | Msa0736620:intron | 30.0% | |
| ATTTATTCTATGTGGGACTT+TGG | - | chr5_1:53204205-53204224 | Msa0736620:intron | 30.0% | |
| ATTAACAAAGAGCAACCAAA+TGG | + | chr5_1:53204283-53204302 | None:intergenic | 30.0% | |
| TTTAGCATGTTCTCTTGAAT+TGG | + | chr5_1:53204426-53204445 | None:intergenic | 30.0% | |
| ! | CTTTTCAAATTTCTTCAGGT+TGG | - | chr5_1:53204549-53204568 | Msa0736620:CDS | 30.0% |
| AATGAAAAGAGAGACAATGA+TGG | + | chr5_1:53204646-53204665 | None:intergenic | 30.0% | |
| ! | TGTCTCTCTTTTCATTTCTT+TGG | - | chr5_1:53204650-53204669 | Msa0736620:intron | 30.0% |
| ! | CAATTTCAACAGTTGTCTTT+TGG | - | chr5_1:53204754-53204773 | Msa0736620:intron | 30.0% |
| CTCAAGTATCTTTCTATACA+GGG | + | chr5_1:53205041-53205060 | None:intergenic | 30.0% | |
| ACTCAAGTATCTTTCTATAC+AGG | + | chr5_1:53205042-53205061 | None:intergenic | 30.0% | |
| ! | TTTTTGCATGTAATTGTACG+CGG | - | chr5_1:53205134-53205153 | Msa0736620:intron | 30.0% |
| TGTGCATTATTAGGTGATTA+AGG | + | chr5_1:53205350-53205369 | None:intergenic | 30.0% | |
| ATCACCTAATAATGCACATT+AGG | - | chr5_1:53205352-53205371 | Msa0736620:intron | 30.0% | |
| TGTGTCAGCATTCAAATAAT+TGG | + | chr5_1:53205397-53205416 | None:intergenic | 30.0% | |
| TTGAAAGAAAGAATTCCATC+AGG | + | chr5_1:53205455-53205474 | None:intergenic | 30.0% | |
| TCAATCTCAACTCAACAAAT+TGG | - | chr5_1:53205471-53205490 | Msa0736620:intron | 30.0% | |
| CTTAGATAAAAATCCATCTC+AGG | + | chr5_1:53205792-53205811 | None:intergenic | 30.0% | |
| ACTAGTGTTAGACCAAAAAA+AGG | + | chr5_1:53205832-53205851 | None:intergenic | 30.0% | |
| TGAAAATAATACAAGCAGGA+TGG | - | chr5_1:53205864-53205883 | Msa0736620:intron | 30.0% | |
| GAAAATAATACAAGCAGGAT+GGG | - | chr5_1:53205865-53205884 | Msa0736620:intron | 30.0% | |
| TTTCAAATTATTCTGCTGCT+TGG | - | chr5_1:53205972-53205991 | Msa0736620:intron | 30.0% | |
| ! | TTCAAATTATTCTGCTGCTT+GGG | - | chr5_1:53205973-53205992 | Msa0736620:intron | 30.0% |
| ! | ATTAAGGGTTGAAAAAGCAT+TGG | - | chr5_1:53206224-53206243 | Msa0736620:CDS | 30.0% |
| ! | ATGTTAATACATTGGCCTAT+TGG | - | chr5_1:53206506-53206525 | Msa0736620:five_prime_UTR | 30.0% |
| ! | CTCAATTTTCAGTTAGTTGG+AGG | + | chr5_1:53202701-53202720 | None:intergenic | 35.0% |
| ATCCGATTAGCAGTATAAGA+AGG | + | chr5_1:53202851-53202870 | None:intergenic | 35.0% | |
| ! | AGTGTAGTTTCTAGAAGCTT+CGG | + | chr5_1:53202900-53202919 | None:intergenic | 35.0% |
| ! | GCAATCACAATTTAAAGCGT+TGG | + | chr5_1:53203088-53203107 | None:intergenic | 35.0% |
| TCTCATAAACTTAGCTTAGC+TGG | - | chr5_1:53203305-53203324 | Msa0736620:intron | 35.0% | |
| CTCATAAACTTAGCTTAGCT+GGG | - | chr5_1:53203306-53203325 | Msa0736620:intron | 35.0% | |
| !!! | CCTTTTTTTGTTGGTCAAGT+AGG | + | chr5_1:53203410-53203429 | None:intergenic | 35.0% |
| CCTACTTGACCAACAAAAAA+AGG | - | chr5_1:53203407-53203426 | Msa0736620:intron | 35.0% | |
| !!! | AATTGCACCCCTTTTTTTGT+TGG | + | chr5_1:53203419-53203438 | None:intergenic | 35.0% |
| !! | AACAAAGTGTCGCAAAAGTA+GGG | + | chr5_1:53203488-53203507 | None:intergenic | 35.0% |
| !! | TAACAAAGTGTCGCAAAAGT+AGG | + | chr5_1:53203489-53203508 | None:intergenic | 35.0% |
| GATTAACTCAAGTGCATGAT+TGG | - | chr5_1:53203574-53203593 | Msa0736620:intron | 35.0% | |
| TTAACTCAAGTGCATGATTG+GGG | - | chr5_1:53203576-53203595 | Msa0736620:intron | 35.0% | |
| AATTCTGCATGTGATTAACC+TGG | - | chr5_1:53203768-53203787 | Msa0736620:intron | 35.0% | |
| ! | TGTCCATGAAACATTTTGGA+GGG | - | chr5_1:53203823-53203842 | Msa0736620:intron | 35.0% |
| TTTCCCTCCAAAATGTTTCA+TGG | + | chr5_1:53203829-53203848 | None:intergenic | 35.0% | |
| TCTGGTGTTTATAAGCCATT+TGG | - | chr5_1:53204265-53204284 | Msa0736620:intron | 35.0% | |
| ! | CTCTCTTTTCATTTCTTTGG+TGG | - | chr5_1:53204653-53204672 | Msa0736620:intron | 35.0% |
| ! | TCTTTTCATTTCTTTGGTGG+TGG | - | chr5_1:53204656-53204675 | Msa0736620:intron | 35.0% |
| AATCGGACTATAATACATGC+TGG | - | chr5_1:53204932-53204951 | Msa0736620:intron | 35.0% | |
| ATCGGACTATAATACATGCT+GGG | - | chr5_1:53204933-53204952 | Msa0736620:intron | 35.0% | |
| CTATTTAGCATCAATACCTC+AGG | + | chr5_1:53205306-53205325 | None:intergenic | 35.0% | |
| !! | CTGAGGTATTGATGCTAAAT+AGG | - | chr5_1:53205304-53205323 | Msa0736620:intron | 35.0% |
| TGAATACCAGAATTACCTGA+TGG | - | chr5_1:53205437-53205456 | Msa0736620:intron | 35.0% | |
| AGAATTCCATCAGGTAATTC+TGG | + | chr5_1:53205446-53205465 | None:intergenic | 35.0% | |
| ATTTCTAACAGTCGTGATCT+TGG | - | chr5_1:53205513-53205532 | Msa0736620:intron | 35.0% | |
| !!! | AAGTTTTTTGCTTCCTGAGA+TGG | - | chr5_1:53205776-53205795 | Msa0736620:intron | 35.0% |
| ! | TTGGATTCTTTTGTACTGCA+TGG | - | chr5_1:53205888-53205907 | Msa0736620:intron | 35.0% |
| ! | ATGAGTGTTTTGCAAATCCA+AGG | + | chr5_1:53205931-53205950 | None:intergenic | 35.0% |
| ! | TCAAATTATTCTGCTGCTTG+GGG | - | chr5_1:53205974-53205993 | Msa0736620:intron | 35.0% |
| AATGTTTGTGTGAAAGGTTG+CGG | + | chr5_1:53206003-53206022 | None:intergenic | 35.0% | |
| AATCGGAATGTTTGTGTGAA+AGG | + | chr5_1:53206009-53206028 | None:intergenic | 35.0% | |
| TTCACACAAACATTCCGATT+AGG | - | chr5_1:53206009-53206028 | Msa0736620:intron | 35.0% | |
| CTTATGTGTGAAGTTACATG+TGG | - | chr5_1:53206051-53206070 | Msa0736620:intron | 35.0% | |
| !! | GCAGTGTTGATAAAATATGC+TGG | - | chr5_1:53206180-53206199 | Msa0736620:intron | 35.0% |
| ACAATACCAGGTAATTACGT+AGG | + | chr5_1:53206264-53206283 | None:intergenic | 35.0% | |
| ! | AGCTTAAGTTGTACAATACC+AGG | + | chr5_1:53206276-53206295 | None:intergenic | 35.0% |
| TGCATGAAATTGCATTTGTG+TGG | - | chr5_1:53206296-53206315 | Msa0736620:CDS | 35.0% | |
| TGATGTACTTGTATGAACGA+AGG | - | chr5_1:53206349-53206368 | Msa0736620:CDS | 35.0% | |
| ! | TATTCATTTGAAACCAGAGC+AGG | - | chr5_1:53206432-53206451 | Msa0736620:CDS | 35.0% |
| GTTATAATATGATCCTGCTC+TGG | + | chr5_1:53206448-53206467 | None:intergenic | 35.0% | |
| GGATCATATTATAACACGAC+AGG | - | chr5_1:53206453-53206472 | Msa0736620:exon | 35.0% | |
| TTGAGTTCTTCGATCTGAAC+TGG | - | chr5_1:53202716-53202735 | Msa0736620:three_prime_UTR | 40.0% | |
| GAGATGGCAGAGAAAGAAAA+CGG | - | chr5_1:53202740-53202759 | Msa0736620:three_prime_UTR | 40.0% | |
| CTAGAAGCTTCGGGAATATA+AGG | + | chr5_1:53202890-53202909 | None:intergenic | 40.0% | |
| ! | GTGTAGTTTCTAGAAGCTTC+GGG | + | chr5_1:53202899-53202918 | None:intergenic | 40.0% |
| TAAACTTAGCTTAGCTGGGA+AGG | - | chr5_1:53203310-53203329 | Msa0736620:intron | 40.0% | |
| ACATTGCAACATGCAAGAGT+CGG | - | chr5_1:53203333-53203352 | Msa0736620:intron | 40.0% | |
| ! | TAAGTTGGGAAATCCAGGAT+TGG | + | chr5_1:53203363-53203382 | None:intergenic | 40.0% |
| CCTGGATTTCCCAACTTATT+CGG | - | chr5_1:53203365-53203384 | Msa0736620:intron | 40.0% | |
| CTGGATTTCCCAACTTATTC+GGG | - | chr5_1:53203366-53203385 | Msa0736620:intron | 40.0% | |
| !! | ACAAAGTGTCGCAAAAGTAG+GGG | + | chr5_1:53203487-53203506 | None:intergenic | 40.0% |
| TAACTCAAGTGCATGATTGG+GGG | - | chr5_1:53203577-53203596 | Msa0736620:intron | 40.0% | |
| CTCTGGATCTTTAATCCCTT+AGG | + | chr5_1:53203624-53203643 | None:intergenic | 40.0% | |
| TCTAGTCAGGATTCAAACTC+TGG | + | chr5_1:53203641-53203660 | None:intergenic | 40.0% | |
| ! | CCAATTTTCCCTACACCTAT+GGG | + | chr5_1:53203802-53203821 | None:intergenic | 40.0% |
| CCATAGGTGTAGGGAAAATT+GGG | - | chr5_1:53203800-53203819 | Msa0736620:intron | 40.0% | |
| ! | TGGGTGTCCATGAAACATTT+TGG | - | chr5_1:53203819-53203838 | Msa0736620:intron | 40.0% |
| ! | GTGTCCATGAAACATTTTGG+AGG | - | chr5_1:53203822-53203841 | Msa0736620:intron | 40.0% |
| ATAGTGGTTGCAGTAACGAT+TGG | - | chr5_1:53203852-53203871 | Msa0736620:intron | 40.0% | |
| TTATGTCGCAGTCTAGATTG+TGG | - | chr5_1:53203963-53203982 | Msa0736620:intron | 40.0% | |
| TCATTTCGGTTTCATCCTTC+TGG | - | chr5_1:53204331-53204350 | Msa0736620:intron | 40.0% | |
| TTGCAGTAAACACAACCAGA+AGG | + | chr5_1:53204349-53204368 | None:intergenic | 40.0% | |
| ! | GAAGGAGAAGCATAAAGGTA+AGG | + | chr5_1:53204605-53204624 | None:intergenic | 40.0% |
| TACCTTTATGCTTCTCCTTC+TGG | - | chr5_1:53204605-53204624 | Msa0736620:CDS | 40.0% | |
| ! | AACCAGAAGGAGAAGCATAA+AGG | + | chr5_1:53204610-53204629 | None:intergenic | 40.0% |
| ! | CATTGATAGTTGCAACCAGA+AGG | + | chr5_1:53204623-53204642 | None:intergenic | 40.0% |
| TGCAGTTATCAGAATAGCCA+CGG | + | chr5_1:53204784-53204803 | None:intergenic | 40.0% | |
| GAAAAAGGTTGGAAAACAGC+TGG | + | chr5_1:53204812-53204831 | None:intergenic | 40.0% | |
| ! | ACACACACACACACACTTTT+CGG | + | chr5_1:53205069-53205088 | None:intergenic | 40.0% |
| TATGAAACATTGACACGCAC+AGG | - | chr5_1:53205181-53205200 | Msa0736620:intron | 40.0% | |
| !! | CTGTTTCTGTGTGTTTGTGT+TGG | + | chr5_1:53205214-53205233 | None:intergenic | 40.0% |
| CAACACAAACACACAGAAAC+AGG | - | chr5_1:53205212-53205231 | Msa0736620:intron | 40.0% | |
| TTAGCATCAATACCTCAGGT+TGG | + | chr5_1:53205302-53205321 | None:intergenic | 40.0% | |
| ! | AGGTGATTAAGGAGTTCTGA+GGG | + | chr5_1:53205339-53205358 | None:intergenic | 40.0% |
| TAGGTGATTAAGGAGTTCTG+AGG | + | chr5_1:53205340-53205359 | None:intergenic | 40.0% | |
| AGTAGCTGATCTCCATCAAA+CGG | - | chr5_1:53205613-53205632 | Msa0736620:intron | 40.0% | |
| AACAATGCAGTCATTGCTGT+CGG | + | chr5_1:53205649-53205668 | None:intergenic | 40.0% | |
| TTTGCGACTGTAGGAAACTT+AGG | - | chr5_1:53205668-53205687 | Msa0736620:intron | 40.0% | |
| ! | CATTTGATTTCAGAGTCGCA+AGG | + | chr5_1:53205748-53205767 | None:intergenic | 40.0% |
| ATAATACAAGCAGGATGGGT+TGG | - | chr5_1:53205869-53205888 | Msa0736620:intron | 40.0% | |
| AAACACTCATTAAGCGTGAG+TGG | - | chr5_1:53205941-53205960 | Msa0736620:intron | 40.0% | |
| TACATGTGGATGCTGTGAAA+TGG | - | chr5_1:53206065-53206084 | Msa0736620:intron | 40.0% | |
| CAAAAGCTTCTTCTGTTGAC+TGG | - | chr5_1:53206088-53206107 | Msa0736620:intron | 40.0% | |
| ATCGAAACCAAACAGTGAGT+GGG | + | chr5_1:53206127-53206146 | None:intergenic | 40.0% | |
| ! | TGTTAGCCTACGTAATTACC+TGG | - | chr5_1:53206255-53206274 | Msa0736620:CDS | 40.0% |
| TTCGATCTGAACTGGAGAGA+TGG | - | chr5_1:53202724-53202743 | Msa0736620:three_prime_UTR | 45.0% | |
| GGGAATATAAGGAGAGAGTG+AGG | + | chr5_1:53202879-53202898 | None:intergenic | 45.0% | |
| AATGAGAAGGAGAGGTCGAA+GGG | + | chr5_1:53202957-53202976 | None:intergenic | 45.0% | |
| AAATGAGAAGGAGAGGTCGA+AGG | + | chr5_1:53202958-53202977 | None:intergenic | 45.0% | |
| TCGACCTCTCCTTCTCATTT+CGG | - | chr5_1:53202958-53202977 | Msa0736620:three_prime_UTR | 45.0% | |
| CTCTCCTTCTCATTTCGGTT+CGG | - | chr5_1:53202963-53202982 | Msa0736620:three_prime_UTR | 45.0% | |
| GTAACCGAACCGAAATGAGA+AGG | + | chr5_1:53202970-53202989 | None:intergenic | 45.0% | |
| CATTGCAACATGCAAGAGTC+GGG | - | chr5_1:53203334-53203353 | Msa0736620:intron | 45.0% | |
| ATTGCAACATGCAAGAGTCG+GGG | - | chr5_1:53203335-53203354 | Msa0736620:intron | 45.0% | |
| ! | CCGAATAAGTTGGGAAATCC+AGG | + | chr5_1:53203368-53203387 | None:intergenic | 45.0% |
| TTGTTGGTCAAGTAGGCTAG+TGG | + | chr5_1:53203403-53203422 | None:intergenic | 45.0% | |
| !! | CAAAGTGTCGCAAAAGTAGG+GGG | + | chr5_1:53203486-53203505 | None:intergenic | 45.0% |
| TAGCTCACTTGGTTGACCTA+AGG | - | chr5_1:53203605-53203624 | Msa0736620:intron | 45.0% | |
| AGCTCACTTGGTTGACCTAA+GGG | - | chr5_1:53203606-53203625 | Msa0736620:intron | 45.0% | |
| CCCATAGGTGTAGGGAAAAT+TGG | - | chr5_1:53203799-53203818 | Msa0736620:intron | 45.0% | |
| ! | CCCAATTTTCCCTACACCTA+TGG | + | chr5_1:53203803-53203822 | None:intergenic | 45.0% |
| GGTTGCAGTAACGATTGGAA+TGG | - | chr5_1:53203857-53203876 | Msa0736620:intron | 45.0% | |
| GGATCACAATCAATGAGCCT+TGG | - | chr5_1:53203910-53203929 | Msa0736620:intron | 45.0% | |
| CAATCAATGAGCCTTGGTTG+TGG | - | chr5_1:53203916-53203935 | Msa0736620:intron | 45.0% | |
| CTATAATGCGACCACAACCA+AGG | + | chr5_1:53203930-53203949 | None:intergenic | 45.0% | |
| TCTAGATTGTGGTTGTGGAC+CGG | - | chr5_1:53203974-53203993 | Msa0736620:intron | 45.0% | |
| ! | CAGAGTGGTTAGTTAGTCTG+TGG | - | chr5_1:53204175-53204194 | Msa0736620:intron | 45.0% |
| ! | ATGTCGTGAGGAGGTGTAAT+GGG | + | chr5_1:53204234-53204253 | None:intergenic | 45.0% |
| CTCCTCACGACATCACTATT+GGG | - | chr5_1:53204241-53204260 | Msa0736620:intron | 45.0% | |
| ATTGCTCTTGTTGCCTTGAC+AGG | - | chr5_1:53204576-53204595 | Msa0736620:CDS | 45.0% | |
| AAAGGTAAGGAGTCCTGTCA+AGG | + | chr5_1:53204592-53204611 | None:intergenic | 45.0% | |
| !! | TTCATTTCTTTGGTGGTGGC+CGG | - | chr5_1:53204660-53204679 | Msa0736620:intron | 45.0% |
| GAAAAGAGCCAAGAATCCTC+CGG | + | chr5_1:53204682-53204701 | None:intergenic | 45.0% | |
| ! | AGTTGTCTTTTGGACAACCG+TGG | - | chr5_1:53204764-53204783 | Msa0736620:intron | 45.0% |
| GTGGCTATTCTGATAACTGC+AGG | - | chr5_1:53204783-53204802 | Msa0736620:intron | 45.0% | |
| ! | GTGTGTGTGTGTGTGTGTTT+TGG | - | chr5_1:53205073-53205092 | Msa0736620:intron | 45.0% |
| ACAGTCGTGATCTTGGCAAT+AGG | - | chr5_1:53205520-53205539 | Msa0736620:intron | 45.0% | |
| GGTGAATGTCAACCGTTTGA+TGG | + | chr5_1:53205628-53205647 | None:intergenic | 45.0% | |
| !! | CTGCATTGTTTTGCGACTGT+AGG | - | chr5_1:53205659-53205678 | Msa0736620:intron | 45.0% |
| ! | TTGATAGCTAGCAAGAGCCT+TGG | - | chr5_1:53205911-53205930 | Msa0736620:intron | 45.0% |
| ACCTGTGATCAGCTCCTAAT+CGG | + | chr5_1:53206026-53206045 | None:intergenic | 45.0% | |
| ATTAGGAGCTGATCACAGGT+AGG | - | chr5_1:53206026-53206045 | Msa0736620:intron | 45.0% | |
| CCAAACAGTGAGTGGGATTT+GGG | + | chr5_1:53206120-53206139 | None:intergenic | 45.0% | |
| ACCAAACAGTGAGTGGGATT+TGG | + | chr5_1:53206121-53206140 | None:intergenic | 45.0% | |
| CATCGAAACCAAACAGTGAG+TGG | + | chr5_1:53206128-53206147 | None:intergenic | 45.0% | |
| ! | CACTCACTGTTTGGTTTCGA+TGG | - | chr5_1:53206126-53206145 | Msa0736620:intron | 45.0% |
| CGAACCGAAATGAGAAGGAG+AGG | + | chr5_1:53202965-53202984 | None:intergenic | 50.0% | |
| TCAAGTGCATGATTGGGGGT+TGG | - | chr5_1:53203581-53203600 | Msa0736620:intron | 50.0% | |
| CAAGTGCATGATTGGGGGTT+GGG | - | chr5_1:53203582-53203601 | Msa0736620:intron | 50.0% | |
| CGCAGTCTAGATTGTGGTTG+TGG | - | chr5_1:53203969-53203988 | Msa0736620:intron | 50.0% | |
| GCTTCACGGTTAAGCACATC+AGG | + | chr5_1:53204014-53204033 | None:intergenic | 50.0% | |
| ! | GATGTCGTGAGGAGGTGTAA+TGG | + | chr5_1:53204235-53204254 | None:intergenic | 50.0% |
| CCAATAGTGATGTCGTGAGG+AGG | + | chr5_1:53204243-53204262 | None:intergenic | 50.0% | |
| CCTCCTCACGACATCACTAT+TGG | - | chr5_1:53204240-53204259 | Msa0736620:intron | 50.0% | |
| AGCCCAATAGTGATGTCGTG+AGG | + | chr5_1:53204246-53204265 | None:intergenic | 50.0% | |
| ACGACATCACTATTGGGCTC+TGG | - | chr5_1:53204247-53204266 | Msa0736620:intron | 50.0% | |
| ! | ATACACTGACTGTCCGACAC+TGG | - | chr5_1:53205256-53205275 | Msa0736620:intron | 50.0% |
| TGCGAGTGTCTAACCAGTGT+CGG | + | chr5_1:53205272-53205291 | None:intergenic | 50.0% | |
| !! | GCATCAATACCTCAGGTTGG+AGG | + | chr5_1:53205299-53205318 | None:intergenic | 50.0% |
| GAAACTTAGGTCCACAGCAG+AGG | - | chr5_1:53205681-53205700 | Msa0736620:intron | 50.0% | |
| TCCGATTAGGAGCTGATCAC+AGG | - | chr5_1:53206022-53206041 | Msa0736620:intron | 50.0% | |
| CCCAAATCCCACTCACTGTT+TGG | - | chr5_1:53206117-53206136 | Msa0736620:intron | 50.0% | |
| GACGAGACCAGCGAAGAACA+CGG | + | chr5_1:53202925-53202944 | None:intergenic | 55.0% | |
| ! | GTTCTTCGCTGGTCTCGTCA+AGG | - | chr5_1:53202926-53202945 | Msa0736620:three_prime_UTR | 55.0% |
| AAGAGTCGGGGTTCCAATCC+TGG | - | chr5_1:53203347-53203366 | Msa0736620:intron | 55.0% | |
| TGTCGCAGCCCATAGGTGTA+GGG | - | chr5_1:53203791-53203810 | Msa0736620:intron | 55.0% | |
| !! | ATTTCTTTGGTGGTGGCCGG+AGG | - | chr5_1:53204663-53204682 | Msa0736620:intron | 55.0% |
| CTACCACAGAACCTCTGCTG+TGG | + | chr5_1:53205695-53205714 | None:intergenic | 55.0% | |
| ACACTCGCCGTGTTCTTCGC+TGG | - | chr5_1:53202915-53202934 | Msa0736620:three_prime_UTR | 60.0% | |
| TGGGGGTTGGGTAGCTCACT+TGG | - | chr5_1:53203594-53203613 | Msa0736620:intron | 60.0% | |
| !! | AACCTGGTGTCGCAGCCCAT+AGG | - | chr5_1:53203784-53203803 | Msa0736620:intron | 60.0% |
| GTGTCGCAGCCCATAGGTGT+AGG | - | chr5_1:53203790-53203809 | Msa0736620:intron | 60.0% | |
| TCGCACACACCTCCAACCTG+AGG | - | chr5_1:53205287-53205306 | Msa0736620:intron | 60.0% | |
| GGTCCACAGCAGAGGTTCTG+TGG | - | chr5_1:53205689-53205708 | Msa0736620:intron | 60.0% | |
| ! | CACCTATGGGCTGCGACACC+AGG | + | chr5_1:53203789-53203808 | None:intergenic | 65.0% |
| ! | GGTGGTGGCCGGAGGATTCT+TGG | - | chr5_1:53204671-53204690 | Msa0736620:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 53202661 | 53206537 | 53202661 | ID=Msa0736620;Name=Msa0736620 |
| chr5_1 | mRNA | 53202661 | 53206537 | 53202661 | ID=Msa0736620-mRNA-1;Parent=Msa0736620;Name=Msa0736620-mRNA-1;_AED=0.35;_eAED=0.35;_QI=82|1|1|1|1|1|3|507|207 |
| chr5_1 | exon | 53202661 | 53203316 | 53202661 | ID=Msa0736620-mRNA-1:exon:14973;Parent=Msa0736620-mRNA-1 |
| chr5_1 | exon | 53204394 | 53204631 | 53204394 | ID=Msa0736620-mRNA-1:exon:14972;Parent=Msa0736620-mRNA-1 |
| chr5_1 | exon | 53206219 | 53206537 | 53206219 | ID=Msa0736620-mRNA-1:exon:14971;Parent=Msa0736620-mRNA-1 |
| chr5_1 | five_prime_UTR | 53206456 | 53206537 | 53206456 | ID=Msa0736620-mRNA-1:five_prime_utr;Parent=Msa0736620-mRNA-1 |
| chr5_1 | CDS | 53206219 | 53206455 | 53206219 | ID=Msa0736620-mRNA-1:cds;Parent=Msa0736620-mRNA-1 |
| chr5_1 | CDS | 53204394 | 53204631 | 53204394 | ID=Msa0736620-mRNA-1:cds;Parent=Msa0736620-mRNA-1 |
| chr5_1 | CDS | 53203168 | 53203316 | 53203168 | ID=Msa0736620-mRNA-1:cds;Parent=Msa0736620-mRNA-1 |
| chr5_1 | three_prime_UTR | 53202661 | 53203167 | 53202661 | ID=Msa0736620-mRNA-1:three_prime_utr;Parent=Msa0736620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
