Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856130 | XP_003616200.1 | 95.610 | 205 | 6 | 1 | 1 | 205 | 1 | 202 | 7.28e-133 | 381 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856130 | G7KFX1 | 95.610 | 205 | 6 | 1 | 1 | 205 | 1 | 202 | 3.48e-133 | 381 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0736620 | Msa0856130 | 0.953996 | 7.966465e-112 | -8.615850e-47 |
| Msa0807530 | Msa0856130 | 0.816495 | 5.368501e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856130 | MtrunA17_Chr5g0434081 | 95.610 | 205 | 6 | 1 | 1 | 205 | 1 | 202 | 6.70e-137 | 381 |
| Msa0856130 | MtrunA17_Chr5g0443491 | 63.905 | 169 | 58 | 1 | 40 | 205 | 64 | 232 | 4.10e-69 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856130 | AT5G16550.1 | 43.810 | 210 | 97 | 4 | 9 | 205 | 39 | 240 | 6.36e-47 | 155 |
Find 69 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATTGTGTTACACAATTA+AGG | 0.154601 | 5_4:-50486466 | Msa0856130:three_prime_UTR |
| ATTAATAACAGTTATATTAA+AGG | 0.180357 | 5_4:+50486189 | None:intergenic |
| TACCTTTATGCTTCTCCTTC+TGG | 0.191402 | 5_4:-50488071 | Msa0856130:CDS |
| CAATTTCAACAGTTGTCTTT+TGG | 0.213908 | 5_4:-50487922 | Msa0856130:CDS |
| AACTGTTGAAATTGCAAATA+TGG | 0.243964 | 5_4:+50487931 | None:intergenic |
| GGTGGTGGCCGGAGGATTCT+TGG | 0.250332 | 5_4:-50488005 | Msa0856130:CDS |
| ACCAAACAGTGAGTGGGATT+TGG | 0.280277 | 5_4:+50486556 | None:intergenic |
| TTCAAATTATTCTGCTGCTT+GGG | 0.313188 | 5_4:-50486701 | Msa0856130:CDS |
| TCGACCTCTCCTTCTCATTT+CGG | 0.313356 | 5_4:-50489715 | Msa0856130:intron |
| CCAAACAGTGAGTGGGATTT+GGG | 0.313820 | 5_4:+50486557 | None:intergenic |
| CTAGAAGCTTCGGGAATATA+AGG | 0.325702 | 5_4:+50489786 | None:intergenic |
| ATGTTAATACATTGGCCTAT+TGG | 0.334828 | 5_4:-50486168 | Msa0856130:three_prime_UTR |
| CCCAAATCCCACTCACTGTT+TGG | 0.345488 | 5_4:-50486557 | Msa0856130:three_prime_UTR |
| TTAGTGACAGCAATATATAT+TGG | 0.354686 | 5_4:-50487968 | Msa0856130:CDS |
| TTGAGTTCTTCGATCTGAAC+TGG | 0.371062 | 5_4:-50489951 | Msa0856130:five_prime_UTR |
| TTCATTTCTTTGGTGGTGGC+CGG | 0.390732 | 5_4:-50488016 | Msa0856130:CDS |
| GTGTAGTTTCTAGAAGCTTC+GGG | 0.394632 | 5_4:+50489777 | None:intergenic |
| ATTGCTCTTGTTGCCTTGAC+AGG | 0.399432 | 5_4:-50488100 | Msa0856130:CDS |
| AGTGTAGTTTCTAGAAGCTT+CGG | 0.407995 | 5_4:+50489776 | None:intergenic |
| ACCTGTGATCAGCTCCTAAT+CGG | 0.414543 | 5_4:+50486651 | None:intergenic |
| GTATTGTGTTACACAATTAA+GGG | 0.422615 | 5_4:-50486465 | Msa0856130:three_prime_UTR |
| CACTCACTGTTTGGTTTCGA+TGG | 0.430823 | 5_4:-50486548 | Msa0856130:three_prime_UTR |
| TTCACACAAACATTCCGATT+AGG | 0.433053 | 5_4:-50486665 | Msa0856130:exon |
| CAAAAGCTTCTTCTGTTGAC+TGG | 0.440439 | 5_4:-50486586 | Msa0856130:three_prime_UTR |
| TTTCAAATTATTCTGCTGCT+TGG | 0.446312 | 5_4:-50486702 | Msa0856130:CDS |
| AACCTTCTTATACTGCTAAT+CGG | 0.456832 | 5_4:-50489827 | Msa0856130:CDS |
| AACCAGAAGGAGAAGCATAA+AGG | 0.481508 | 5_4:+50488069 | None:intergenic |
| GTTATAATATGATCCTGCTC+TGG | 0.487746 | 5_4:+50486229 | None:intergenic |
| AATGGCATGTTCGAACCAAT+AGG | 0.489203 | 5_4:+50486153 | None:intergenic |
| ATAATACGAGCAGGATGGGT+TGG | 0.490556 | 5_4:-50486805 | Msa0856130:intron |
| ATCCGATTAGCAGTATAAGA+AGG | 0.498829 | 5_4:+50489825 | None:intergenic |
| GAAGGAGAAGCATAAAGGTA+AGG | 0.513668 | 5_4:+50488074 | None:intergenic |
| TCCGATTAGGAGCTGATCAC+AGG | 0.513825 | 5_4:-50486652 | Msa0856130:exon |
| TGTTATTAATGTTAATACAT+TGG | 0.514048 | 5_4:-50486176 | Msa0856130:three_prime_UTR |
| AATCGGAATGTTTGTGTGAA+AGG | 0.516233 | 5_4:+50486668 | None:intergenic |
| TTGATAGCTAGCAAGAGCCT+TGG | 0.537563 | 5_4:-50486763 | Msa0856130:CDS |
| AATGAGAAGGAGAGGTCGAA+GGG | 0.543624 | 5_4:+50489719 | None:intergenic |
| GAGATGGCAGAGAAAGAAAA+CGG | 0.543810 | 5_4:-50489927 | Msa0856130:CDS |
| ACACTCGCCGTGTTCTTCGC+TGG | 0.544785 | 5_4:-50489758 | Msa0856130:CDS |
| GTGGCTATTCTGATAACTGC+AGG | 0.545502 | 5_4:-50487893 | Msa0856130:intron |
| TACATGTGGATGCTGTGAAA+TGG | 0.547387 | 5_4:-50486609 | Msa0856130:three_prime_UTR |
| AATGAAAAGAGAGACAATGA+TGG | 0.559549 | 5_4:+50488033 | None:intergenic |
| ATTTCTTTGGTGGTGGCCGG+AGG | 0.560839 | 5_4:-50488013 | Msa0856130:CDS |
| GTTCTTCGCTGGTCTCGTCA+AGG | 0.561562 | 5_4:-50489747 | Msa0856130:CDS |
| TTCGATCTGAACTGGAGAGA+TGG | 0.561622 | 5_4:-50489943 | Msa0856130:exon |
| TCAAATTATTCTGCTGCTTG+GGG | 0.563978 | 5_4:-50486700 | Msa0856130:CDS |
| TATTCATTTGAAACCAGAGC+AGG | 0.565831 | 5_4:-50486242 | Msa0856130:three_prime_UTR |
| GAAAAGAGCCAAGAATCCTC+CGG | 0.567366 | 5_4:+50487997 | None:intergenic |
| TGTTAGCCTACGTAATTACC+TGG | 0.568456 | 5_4:-50486419 | Msa0856130:three_prime_UTR |
| CATCGAAACCAAACAGTGAG+TGG | 0.576080 | 5_4:+50486549 | None:intergenic |
| AAATGAGAAGGAGAGGTCGA+AGG | 0.579200 | 5_4:+50489718 | None:intergenic |
| AGCTTAAGTTGTACAATACC+AGG | 0.580332 | 5_4:+50486401 | None:intergenic |
| CATTGATAGTTGCAACCAGA+AGG | 0.586472 | 5_4:+50488056 | None:intergenic |
| GGATCATATTATAACACGAC+AGG | 0.594084 | 5_4:-50486221 | Msa0856130:three_prime_UTR |
| AATGTTTGTGTGAAAGGTTG+CGG | 0.597552 | 5_4:+50486674 | None:intergenic |
| AAAGGTAAGGAGTCCTGTCA+AGG | 0.607151 | 5_4:+50488087 | None:intergenic |
| GCAGTGTTGATAAAATATGC+TGG | 0.619778 | 5_4:-50486494 | Msa0856130:three_prime_UTR |
| ATCGAAACCAAACAGTGAGT+GGG | 0.619872 | 5_4:+50486550 | None:intergenic |
| GACGAGACCAGCGAAGAACA+CGG | 0.623295 | 5_4:+50489751 | None:intergenic |
| TGCAGTTATCAGAATAGCCA+CGG | 0.625555 | 5_4:+50487895 | None:intergenic |
| GTAACCGAACCGAAATGAGA+AGG | 0.629050 | 5_4:+50489706 | None:intergenic |
| AAACACTCATTAAGCGTGAG+TGG | 0.633113 | 5_4:-50486733 | Msa0856130:CDS |
| TGCATGAAATTGCATTTGTG+TGG | 0.640656 | 5_4:-50486378 | Msa0856130:three_prime_UTR |
| CGAACCGAAATGAGAAGGAG+AGG | 0.653048 | 5_4:+50489711 | None:intergenic |
| GGGAATATAAGGAGAGAGTG+AGG | 0.663880 | 5_4:+50489797 | None:intergenic |
| CTTATGTGTGAAGTTACATG+TGG | 0.666580 | 5_4:-50486623 | Msa0856130:three_prime_UTR |
| ATTAGGAGCTGATCACAGGT+AGG | 0.671400 | 5_4:-50486648 | Msa0856130:exon |
| ACAATACCAGGTAATTACGT+AGG | 0.690583 | 5_4:+50486413 | None:intergenic |
| TGATGTACTTGTATGAACGA+AGG | 0.757731 | 5_4:-50486325 | Msa0856130:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATATGATTTTGTTT+TGG | + | chr5_4:50486731-50486750 | None:intergenic | 10.0% |
| !! | TAACTTTAAATTTATTAAAC+TGG | + | chr5_4:50489077-50489096 | None:intergenic | 10.0% |
| !! | ATTAATAACAGTTATATTAA+AGG | + | chr5_4:50489979-50489998 | None:intergenic | 10.0% |
| !!! | TAAATTAGTAATGTTTTTCA+GGG | - | chr5_4:50486754-50486773 | Msa0856130:CDS | 15.0% |
| !! | CATTCAAAATTATGAAATTA+TGG | + | chr5_4:50487200-50487219 | None:intergenic | 15.0% |
| !!! | TTAAATTGTTATGAACATTT+TGG | - | chr5_4:50488354-50488373 | Msa0856130:intron | 15.0% |
| !! | TGTTATTAATGTTAATACAT+TGG | - | chr5_4:50489989-50490008 | Msa0856130:five_prime_UTR | 15.0% |
| !!! | CTAAATTAGTAATGTTTTTC+AGG | - | chr5_4:50486753-50486772 | Msa0856130:CDS | 20.0% |
| !! | TGTTAATCATGTTAAAAATG+TGG | - | chr5_4:50487001-50487020 | Msa0856130:intron | 20.0% |
| !! | CTTCTATATTTATTCTATGT+GGG | - | chr5_4:50487687-50487706 | Msa0856130:intron | 20.0% |
| !!! | GATTGCATTTTATATCATTT+CGG | - | chr5_4:50487806-50487825 | Msa0856130:intron | 20.0% |
| !! | CAATTAAAGAGAAAAGAAAA+AGG | + | chr5_4:50488316-50488335 | None:intergenic | 20.0% |
| !! | AATGACATGTAGATATAAAT+CGG | - | chr5_4:50488404-50488423 | Msa0856130:intron | 20.0% |
| !!! | AATTTTTTCTGATCATTGAT+TGG | - | chr5_4:50488487-50488506 | Msa0856130:intron | 20.0% |
| !!! | ATTTTTTCTGATCATTGATT+GGG | - | chr5_4:50488488-50488507 | Msa0856130:intron | 20.0% |
| !!! | TTTTTGTTTTCTCCTTTTTT+TGG | - | chr5_4:50489308-50489327 | Msa0856130:intron | 20.0% |
| !! | TTAATATTTTCTCTCTAGTC+AGG | + | chr5_4:50487151-50487170 | None:intergenic | 25.0% |
| ! | ACTAATTATTACATGCTTCA+CGG | + | chr5_4:50487525-50487544 | None:intergenic | 25.0% |
| ! | GCTTCTATATTTATTCTATG+TGG | - | chr5_4:50487686-50487705 | Msa0856130:intron | 25.0% |
| !! | TGCTGATTACACTAAAAATA+TGG | + | chr5_4:50487963-50487982 | None:intergenic | 25.0% |
| ! | AATCAGCATATCAAGAAAAT+AGG | - | chr5_4:50487975-50487994 | Msa0856130:CDS | 25.0% |
| ! | ATCAGCATATCAAGAAAATA+GGG | - | chr5_4:50487976-50487995 | Msa0856130:CDS | 25.0% |
| !!! | TCCTTTTAGTTGAATGTTTA+TGG | - | chr5_4:50488012-50488031 | Msa0856130:CDS | 25.0% |
| ! | ACCATAAACATTCAACTAAA+AGG | + | chr5_4:50488016-50488035 | None:intergenic | 25.0% |
| !! | GTTTCTTTTCAAATTTCTTC+AGG | - | chr5_4:50488034-50488053 | Msa0856130:CDS | 25.0% |
| !!! | TTTTCAAATTTCTTCAGGTT+GGG | - | chr5_4:50488039-50488058 | Msa0856130:CDS | 25.0% |
| ! | TTAGTGACAGCAATATATAT+TGG | - | chr5_4:50488197-50488216 | Msa0856130:intron | 25.0% |
| ! | AACTGTTGAAATTGCAAATA+TGG | + | chr5_4:50488237-50488256 | None:intergenic | 25.0% |
| ! | TAAAGAGAAAAGAAAAAGGT+TGG | + | chr5_4:50488312-50488331 | None:intergenic | 25.0% |
| !!! | TTGCTTTTTTTTATGAAGAC+TGG | - | chr5_4:50488464-50488483 | Msa0856130:intron | 25.0% |
| ! | ATTTCCTAATGTGCATTATT+AGG | + | chr5_4:50488850-50488869 | None:intergenic | 25.0% |
| ! | TGTATTGTGTTACACAATTA+AGG | - | chr5_4:50489699-50489718 | Msa0856130:intron | 25.0% |
| ! | GTATTGTGTTACACAATTAA+GGG | - | chr5_4:50489700-50489719 | Msa0856130:intron | 25.0% |
| !!! | CACATTTTTTTTCGTTATGA+TGG | + | chr5_4:50489892-50489911 | None:intergenic | 25.0% |
| ! | CATCATAACGAAAAAAAATG+TGG | - | chr5_4:50489890-50489909 | Msa0856130:CDS | 25.0% |
| ! | GAAAAAAAATGTGGAAACAT+CGG | - | chr5_4:50489899-50489918 | Msa0856130:CDS | 25.0% |
| ! | AAAAAAAATGTGGAAACATC+GGG | - | chr5_4:50489900-50489919 | Msa0856130:CDS | 25.0% |
| ! | GAACTCAATTTTCAGTTAGT+TGG | + | chr5_4:50486202-50486221 | None:intergenic | 30.0% |
| AACCTTCTTATACTGCTAAT+CGG | - | chr5_4:50486338-50486357 | Msa0856130:three_prime_UTR | 30.0% | |
| TATTAACAATCGTTGTTCTG+AGG | - | chr5_4:50486640-50486659 | Msa0856130:three_prime_UTR | 30.0% | |
| AAATTTCACCCGAATAAGTT+GGG | + | chr5_4:50486874-50486893 | None:intergenic | 30.0% | |
| AAAATTTCACCCGAATAAGT+TGG | + | chr5_4:50486875-50486894 | None:intergenic | 30.0% | |
| ! | AACTTATTCGGGTGAAATTT+TGG | - | chr5_4:50486874-50486893 | Msa0856130:intron | 30.0% |
| CTACTTGACCAACAAAAAAA+GGG | - | chr5_4:50486905-50486924 | Msa0856130:intron | 30.0% | |
| TACTTGACCAACAAAAAAAG+GGG | - | chr5_4:50486906-50486925 | Msa0856130:intron | 30.0% | |
| ATTAACTCAAGTGCATGATT+GGG | - | chr5_4:50487072-50487091 | Msa0856130:intron | 30.0% | |
| !! | TTTTGGAGGGAAAAAAATAG+TGG | - | chr5_4:50487333-50487352 | Msa0856130:intron | 30.0% |
| TGTGATCATTGATATTGTAG+AGG | - | chr5_4:50487386-50487405 | Msa0856130:intron | 30.0% | |
| !! | TCAGGATTTTAATAAAGGTC+CGG | + | chr5_4:50487493-50487512 | None:intergenic | 30.0% |
| !! | GCACATCAGGATTTTAATAA+AGG | + | chr5_4:50487498-50487517 | None:intergenic | 30.0% |
| TGATAGTCAAATATTCACTG+AGG | + | chr5_4:50487557-50487576 | None:intergenic | 30.0% | |
| TAACTGCAATGTAACAGAAT+TGG | + | chr5_4:50487636-50487655 | None:intergenic | 30.0% | |
| ATTTATTCTATGTGGGACTT+TGG | - | chr5_4:50487694-50487713 | Msa0856130:intron | 30.0% | |
| ATTAACAAAGAGCAACCAAA+TGG | + | chr5_4:50487772-50487791 | None:intergenic | 30.0% | |
| TTTAGCATGTTCTCTTGAAT+TGG | + | chr5_4:50487915-50487934 | None:intergenic | 30.0% | |
| ! | CTTTTCAAATTTCTTCAGGT+TGG | - | chr5_4:50488038-50488057 | Msa0856130:CDS | 30.0% |
| AATGAAAAGAGAGACAATGA+TGG | + | chr5_4:50488135-50488154 | None:intergenic | 30.0% | |
| ! | TGTCTCTCTTTTCATTTCTT+TGG | - | chr5_4:50488139-50488158 | Msa0856130:intron | 30.0% |
| ! | CAATTTCAACAGTTGTCTTT+TGG | - | chr5_4:50488243-50488262 | Msa0856130:intron | 30.0% |
| CTCAAGTATCTTTCTATACA+GGG | + | chr5_4:50488530-50488549 | None:intergenic | 30.0% | |
| ACTCAAGTATCTTTCTATAC+AGG | + | chr5_4:50488531-50488550 | None:intergenic | 30.0% | |
| ! | TTTTTGCATGTAATTGTACG+CGG | - | chr5_4:50488625-50488644 | Msa0856130:intron | 30.0% |
| TGTGCATTATTAGGTGATTA+AGG | + | chr5_4:50488841-50488860 | None:intergenic | 30.0% | |
| ATCACCTAATAATGCACATT+AGG | - | chr5_4:50488843-50488862 | Msa0856130:intron | 30.0% | |
| TGTGTCAGCATTCAAATAAT+TGG | + | chr5_4:50488888-50488907 | None:intergenic | 30.0% | |
| TTGAAAGAAAGAATTCCATC+AGG | + | chr5_4:50488946-50488965 | None:intergenic | 30.0% | |
| TCAATCTCAACTCAACAAAT+TGG | - | chr5_4:50488962-50488981 | Msa0856130:intron | 30.0% | |
| CTTAGATAAAAATCCATCTC+AGG | + | chr5_4:50489283-50489302 | None:intergenic | 30.0% | |
| ACTAGTGTTAGACCAAAAAA+AGG | + | chr5_4:50489323-50489342 | None:intergenic | 30.0% | |
| AACATGAAAATAATACGAGC+AGG | - | chr5_4:50489351-50489370 | Msa0856130:intron | 30.0% | |
| TTTCAAATTATTCTGCTGCT+TGG | - | chr5_4:50489463-50489482 | Msa0856130:intron | 30.0% | |
| ! | TTCAAATTATTCTGCTGCTT+GGG | - | chr5_4:50489464-50489483 | Msa0856130:intron | 30.0% |
| ! | ATTAAGGGTTGAAAAAGCAT+TGG | - | chr5_4:50489715-50489734 | Msa0856130:intron | 30.0% |
| ! | ATGTTAATACATTGGCCTAT+TGG | - | chr5_4:50489997-50490016 | Msa0856130:five_prime_UTR | 30.0% |
| ! | CTCAATTTTCAGTTAGTTGG+AGG | + | chr5_4:50486199-50486218 | None:intergenic | 35.0% |
| ATCCGATTAGCAGTATAAGA+AGG | + | chr5_4:50486343-50486362 | None:intergenic | 35.0% | |
| ! | AGTGTAGTTTCTAGAAGCTT+CGG | + | chr5_4:50486392-50486411 | None:intergenic | 35.0% |
| ! | GCAATCACAATTTAAAGCGT+TGG | + | chr5_4:50486580-50486599 | None:intergenic | 35.0% |
| TAAACTTAGCTTAGCTTAGC+TGG | - | chr5_4:50486802-50486821 | Msa0856130:intron | 35.0% | |
| AAACTTAGCTTAGCTTAGCT+GGG | - | chr5_4:50486803-50486822 | Msa0856130:intron | 35.0% | |
| ACATTGCAACATGCAAGATT+CGG | - | chr5_4:50486830-50486849 | Msa0856130:intron | 35.0% | |
| !!! | CCTTTTTTTGTTGGTCAAGT+AGG | + | chr5_4:50486907-50486926 | None:intergenic | 35.0% |
| CCTACTTGACCAACAAAAAA+AGG | - | chr5_4:50486904-50486923 | Msa0856130:intron | 35.0% | |
| !!! | AATTGCACCCCTTTTTTTGT+TGG | + | chr5_4:50486916-50486935 | None:intergenic | 35.0% |
| !! | AACAAAGTGTCGCAAAAGTA+GGG | + | chr5_4:50486985-50487004 | None:intergenic | 35.0% |
| !! | TAACAAAGTGTCGCAAAAGT+AGG | + | chr5_4:50486986-50487005 | None:intergenic | 35.0% |
| GATTAACTCAAGTGCATGAT+TGG | - | chr5_4:50487071-50487090 | Msa0856130:intron | 35.0% | |
| TTAACTCAAGTGCATGATTG+GGG | - | chr5_4:50487073-50487092 | Msa0856130:intron | 35.0% | |
| AATTCTGCATGTGATTAACC+TGG | - | chr5_4:50487265-50487284 | Msa0856130:intron | 35.0% | |
| ! | TGTCCATGAAACATTTTGGA+GGG | - | chr5_4:50487320-50487339 | Msa0856130:intron | 35.0% |
| TTTCCCTCCAAAATGTTTCA+TGG | + | chr5_4:50487326-50487345 | None:intergenic | 35.0% | |
| TCTGGTGTTTATAAGCCATT+TGG | - | chr5_4:50487754-50487773 | Msa0856130:intron | 35.0% | |
| ! | CTCTCTTTTCATTTCTTTGG+TGG | - | chr5_4:50488142-50488161 | Msa0856130:intron | 35.0% |
| ! | TCTTTTCATTTCTTTGGTGG+TGG | - | chr5_4:50488145-50488164 | Msa0856130:intron | 35.0% |
| AATCGGACTATAATACATGC+TGG | - | chr5_4:50488421-50488440 | Msa0856130:intron | 35.0% | |
| ATCGGACTATAATACATGCT+GGG | - | chr5_4:50488422-50488441 | Msa0856130:intron | 35.0% | |
| CTATTTAGCATCAATACCTC+AGG | + | chr5_4:50488797-50488816 | None:intergenic | 35.0% | |
| !! | CTGAGGTATTGATGCTAAAT+AGG | - | chr5_4:50488795-50488814 | Msa0856130:intron | 35.0% |
| TGAATACCAGAATTACCTGA+TGG | - | chr5_4:50488928-50488947 | Msa0856130:intron | 35.0% | |
| AGAATTCCATCAGGTAATTC+TGG | + | chr5_4:50488937-50488956 | None:intergenic | 35.0% | |
| ATTTCTAACAGTCGTGATCT+TGG | - | chr5_4:50489004-50489023 | Msa0856130:intron | 35.0% | |
| !!! | AAGTTTTTTGCTTCCTGAGA+TGG | - | chr5_4:50489267-50489286 | Msa0856130:intron | 35.0% |
| TGAAAATAATACGAGCAGGA+TGG | - | chr5_4:50489355-50489374 | Msa0856130:intron | 35.0% | |
| GAAAATAATACGAGCAGGAT+GGG | - | chr5_4:50489356-50489375 | Msa0856130:intron | 35.0% | |
| ! | TTGGATTCTTTTGTACTGCA+TGG | - | chr5_4:50489379-50489398 | Msa0856130:intron | 35.0% |
| ! | ATGAGTGTTTTGCAAATCCA+AGG | + | chr5_4:50489422-50489441 | None:intergenic | 35.0% |
| ! | TCAAATTATTCTGCTGCTTG+GGG | - | chr5_4:50489465-50489484 | Msa0856130:intron | 35.0% |
| AATGTTTGTGTGAAAGGTTG+CGG | + | chr5_4:50489494-50489513 | None:intergenic | 35.0% | |
| AATCGGAATGTTTGTGTGAA+AGG | + | chr5_4:50489500-50489519 | None:intergenic | 35.0% | |
| TTCACACAAACATTCCGATT+AGG | - | chr5_4:50489500-50489519 | Msa0856130:intron | 35.0% | |
| CTTATGTGTGAAGTTACATG+TGG | - | chr5_4:50489542-50489561 | Msa0856130:intron | 35.0% | |
| !! | GCAGTGTTGATAAAATATGC+TGG | - | chr5_4:50489671-50489690 | Msa0856130:intron | 35.0% |
| ACAATACCAGGTAATTACGT+AGG | + | chr5_4:50489755-50489774 | None:intergenic | 35.0% | |
| ! | AGCTTAAGTTGTACAATACC+AGG | + | chr5_4:50489767-50489786 | None:intergenic | 35.0% |
| TGCATGAAATTGCATTTGTG+TGG | - | chr5_4:50489787-50489806 | Msa0856130:CDS | 35.0% | |
| TGATGTACTTGTATGAACGA+AGG | - | chr5_4:50489840-50489859 | Msa0856130:CDS | 35.0% | |
| ! | TATTCATTTGAAACCAGAGC+AGG | - | chr5_4:50489923-50489942 | Msa0856130:CDS | 35.0% |
| GTTATAATATGATCCTGCTC+TGG | + | chr5_4:50489939-50489958 | None:intergenic | 35.0% | |
| GGATCATATTATAACACGAC+AGG | - | chr5_4:50489944-50489963 | Msa0856130:exon | 35.0% | |
| TTGAGTTCTTCGATCTGAAC+TGG | - | chr5_4:50486214-50486233 | Msa0856130:three_prime_UTR | 40.0% | |
| GAGATGGCAGAGAAAGAAAA+CGG | - | chr5_4:50486238-50486257 | Msa0856130:three_prime_UTR | 40.0% | |
| CTAGAAGCTTCGGGAATATA+AGG | + | chr5_4:50486382-50486401 | None:intergenic | 40.0% | |
| ! | GTGTAGTTTCTAGAAGCTTC+GGG | + | chr5_4:50486391-50486410 | None:intergenic | 40.0% |
| CATTGCAACATGCAAGATTC+GGG | - | chr5_4:50486831-50486850 | Msa0856130:intron | 40.0% | |
| ATTGCAACATGCAAGATTCG+GGG | - | chr5_4:50486832-50486851 | Msa0856130:intron | 40.0% | |
| ! | TAAGTTGGGAAATCCAGGAT+TGG | + | chr5_4:50486860-50486879 | None:intergenic | 40.0% |
| CCTGGATTTCCCAACTTATT+CGG | - | chr5_4:50486862-50486881 | Msa0856130:intron | 40.0% | |
| CTGGATTTCCCAACTTATTC+GGG | - | chr5_4:50486863-50486882 | Msa0856130:intron | 40.0% | |
| !! | ACAAAGTGTCGCAAAAGTAG+GGG | + | chr5_4:50486984-50487003 | None:intergenic | 40.0% |
| TAACTCAAGTGCATGATTGG+GGG | - | chr5_4:50487074-50487093 | Msa0856130:intron | 40.0% | |
| CTCTGGATCTTTAATCCCTT+AGG | + | chr5_4:50487121-50487140 | None:intergenic | 40.0% | |
| TCTAGTCAGGATTCAAACTC+TGG | + | chr5_4:50487138-50487157 | None:intergenic | 40.0% | |
| ! | CCAATTTTCCCTACACCTAT+GGG | + | chr5_4:50487299-50487318 | None:intergenic | 40.0% |
| CCATAGGTGTAGGGAAAATT+GGG | - | chr5_4:50487297-50487316 | Msa0856130:intron | 40.0% | |
| ! | TGGGTGTCCATGAAACATTT+TGG | - | chr5_4:50487316-50487335 | Msa0856130:intron | 40.0% |
| ! | GTGTCCATGAAACATTTTGG+AGG | - | chr5_4:50487319-50487338 | Msa0856130:intron | 40.0% |
| ATAGTGGTTGCAGTAACGAT+TGG | - | chr5_4:50487349-50487368 | Msa0856130:intron | 40.0% | |
| TTATGTCGCAGTCTAGATTG+TGG | - | chr5_4:50487460-50487479 | Msa0856130:intron | 40.0% | |
| GCAGTTAGTTAGTTACAGAG+TGG | - | chr5_4:50487649-50487668 | Msa0856130:intron | 40.0% | |
| TCATTTCGGTTTCATCCTTC+TGG | - | chr5_4:50487820-50487839 | Msa0856130:intron | 40.0% | |
| TTGCAGTAAACACAACCAGA+AGG | + | chr5_4:50487838-50487857 | None:intergenic | 40.0% | |
| ! | GAAGGAGAAGCATAAAGGTA+AGG | + | chr5_4:50488094-50488113 | None:intergenic | 40.0% |
| TACCTTTATGCTTCTCCTTC+TGG | - | chr5_4:50488094-50488113 | Msa0856130:CDS | 40.0% | |
| ! | AACCAGAAGGAGAAGCATAA+AGG | + | chr5_4:50488099-50488118 | None:intergenic | 40.0% |
| ! | CATTGATAGTTGCAACCAGA+AGG | + | chr5_4:50488112-50488131 | None:intergenic | 40.0% |
| TGCAGTTATCAGAATAGCCA+CGG | + | chr5_4:50488273-50488292 | None:intergenic | 40.0% | |
| GAAAAAGGTTGGAAAACAGC+TGG | + | chr5_4:50488301-50488320 | None:intergenic | 40.0% | |
| ! | ACACACACACACACACTTTT+CGG | + | chr5_4:50488558-50488577 | None:intergenic | 40.0% |
| TATGAAACATTGACACGCAC+AGG | - | chr5_4:50488672-50488691 | Msa0856130:intron | 40.0% | |
| !! | CTGTTTCTGTGTGTTTGTGT+TGG | + | chr5_4:50488705-50488724 | None:intergenic | 40.0% |
| CAACACAAACACACAGAAAC+AGG | - | chr5_4:50488703-50488722 | Msa0856130:intron | 40.0% | |
| TTAGCATCAATACCTCAGGT+TGG | + | chr5_4:50488793-50488812 | None:intergenic | 40.0% | |
| ! | AGGTGATTAAGGAGTTCTGA+GGG | + | chr5_4:50488830-50488849 | None:intergenic | 40.0% |
| TAGGTGATTAAGGAGTTCTG+AGG | + | chr5_4:50488831-50488850 | None:intergenic | 40.0% | |
| AGTAGCTGATCTCCATCAAA+CGG | - | chr5_4:50489104-50489123 | Msa0856130:intron | 40.0% | |
| AACAATGCAGTCATTGCTGT+CGG | + | chr5_4:50489140-50489159 | None:intergenic | 40.0% | |
| TTTGCGACTGTAGGAAACTT+AGG | - | chr5_4:50489159-50489178 | Msa0856130:intron | 40.0% | |
| ! | CATTTGATTTCAGAGTCGCA+AGG | + | chr5_4:50489239-50489258 | None:intergenic | 40.0% |
| AAACACTCATTAAGCGTGAG+TGG | - | chr5_4:50489432-50489451 | Msa0856130:intron | 40.0% | |
| TACATGTGGATGCTGTGAAA+TGG | - | chr5_4:50489556-50489575 | Msa0856130:intron | 40.0% | |
| CAAAAGCTTCTTCTGTTGAC+TGG | - | chr5_4:50489579-50489598 | Msa0856130:intron | 40.0% | |
| ATCGAAACCAAACAGTGAGT+GGG | + | chr5_4:50489618-50489637 | None:intergenic | 40.0% | |
| ! | TGTTAGCCTACGTAATTACC+TGG | - | chr5_4:50489746-50489765 | Msa0856130:CDS | 40.0% |
| TTCGATCTGAACTGGAGAGA+TGG | - | chr5_4:50486222-50486241 | Msa0856130:three_prime_UTR | 45.0% | |
| GGGAATATAAGGAGAGAGTG+AGG | + | chr5_4:50486371-50486390 | None:intergenic | 45.0% | |
| AATGAGAAGGAGAGGTCGAA+GGG | + | chr5_4:50486449-50486468 | None:intergenic | 45.0% | |
| AAATGAGAAGGAGAGGTCGA+AGG | + | chr5_4:50486450-50486469 | None:intergenic | 45.0% | |
| TCGACCTCTCCTTCTCATTT+CGG | - | chr5_4:50486450-50486469 | Msa0856130:three_prime_UTR | 45.0% | |
| CTCTCCTTCTCATTTCGGTT+CGG | - | chr5_4:50486455-50486474 | Msa0856130:three_prime_UTR | 45.0% | |
| GTAACCGAACCGAAATGAGA+AGG | + | chr5_4:50486462-50486481 | None:intergenic | 45.0% | |
| TTAGCTTAGCTTAGCTGGGA+AGG | - | chr5_4:50486807-50486826 | Msa0856130:intron | 45.0% | |
| ! | CCGAATAAGTTGGGAAATCC+AGG | + | chr5_4:50486865-50486884 | None:intergenic | 45.0% |
| TTGTTGGTCAAGTAGGCTAG+TGG | + | chr5_4:50486900-50486919 | None:intergenic | 45.0% | |
| !! | CAAAGTGTCGCAAAAGTAGG+GGG | + | chr5_4:50486983-50487002 | None:intergenic | 45.0% |
| TAGCTCACTTGGTTGACCTA+AGG | - | chr5_4:50487102-50487121 | Msa0856130:intron | 45.0% | |
| AGCTCACTTGGTTGACCTAA+GGG | - | chr5_4:50487103-50487122 | Msa0856130:intron | 45.0% | |
| CCCATAGGTGTAGGGAAAAT+TGG | - | chr5_4:50487296-50487315 | Msa0856130:intron | 45.0% | |
| ! | CCCAATTTTCCCTACACCTA+TGG | + | chr5_4:50487300-50487319 | None:intergenic | 45.0% |
| GGTTGCAGTAACGATTGGAA+TGG | - | chr5_4:50487354-50487373 | Msa0856130:intron | 45.0% | |
| GGATCACAATCAATGAGCCT+TGG | - | chr5_4:50487407-50487426 | Msa0856130:intron | 45.0% | |
| CAATCAATGAGCCTTGGTTG+TGG | - | chr5_4:50487413-50487432 | Msa0856130:intron | 45.0% | |
| CTATAATGCGACCACAACCA+AGG | + | chr5_4:50487427-50487446 | None:intergenic | 45.0% | |
| TCTAGATTGTGGTTGTGGAC+CGG | - | chr5_4:50487471-50487490 | Msa0856130:intron | 45.0% | |
| ! | CAGAGTGGTTAGTTAGTCTG+TGG | - | chr5_4:50487664-50487683 | Msa0856130:intron | 45.0% |
| ! | ATGTCGTGAGGAGGTGTAAT+GGG | + | chr5_4:50487723-50487742 | None:intergenic | 45.0% |
| CTCCTCACGACATCACTATT+GGG | - | chr5_4:50487730-50487749 | Msa0856130:intron | 45.0% | |
| ATTGCTCTTGTTGCCTTGAC+AGG | - | chr5_4:50488065-50488084 | Msa0856130:CDS | 45.0% | |
| AAAGGTAAGGAGTCCTGTCA+AGG | + | chr5_4:50488081-50488100 | None:intergenic | 45.0% | |
| !! | TTCATTTCTTTGGTGGTGGC+CGG | - | chr5_4:50488149-50488168 | Msa0856130:intron | 45.0% |
| GAAAAGAGCCAAGAATCCTC+CGG | + | chr5_4:50488171-50488190 | None:intergenic | 45.0% | |
| ! | AGTTGTCTTTTGGACAACCG+TGG | - | chr5_4:50488253-50488272 | Msa0856130:intron | 45.0% |
| GTGGCTATTCTGATAACTGC+AGG | - | chr5_4:50488272-50488291 | Msa0856130:intron | 45.0% | |
| ! | GTGTGTGTGTGTGTGTGTTT+TGG | - | chr5_4:50488564-50488583 | Msa0856130:intron | 45.0% |
| ACAGTCGTGATCTTGGCAAT+AGG | - | chr5_4:50489011-50489030 | Msa0856130:intron | 45.0% | |
| GGTGAATGTCAACCGTTTGA+TGG | + | chr5_4:50489119-50489138 | None:intergenic | 45.0% | |
| !! | CTGCATTGTTTTGCGACTGT+AGG | - | chr5_4:50489150-50489169 | Msa0856130:intron | 45.0% |
| ATAATACGAGCAGGATGGGT+TGG | - | chr5_4:50489360-50489379 | Msa0856130:intron | 45.0% | |
| ! | TTGATAGCTAGCAAGAGCCT+TGG | - | chr5_4:50489402-50489421 | Msa0856130:intron | 45.0% |
| ACCTGTGATCAGCTCCTAAT+CGG | + | chr5_4:50489517-50489536 | None:intergenic | 45.0% | |
| ATTAGGAGCTGATCACAGGT+AGG | - | chr5_4:50489517-50489536 | Msa0856130:intron | 45.0% | |
| CCAAACAGTGAGTGGGATTT+GGG | + | chr5_4:50489611-50489630 | None:intergenic | 45.0% | |
| ACCAAACAGTGAGTGGGATT+TGG | + | chr5_4:50489612-50489631 | None:intergenic | 45.0% | |
| CATCGAAACCAAACAGTGAG+TGG | + | chr5_4:50489619-50489638 | None:intergenic | 45.0% | |
| ! | CACTCACTGTTTGGTTTCGA+TGG | - | chr5_4:50489617-50489636 | Msa0856130:intron | 45.0% |
| CGAACCGAAATGAGAAGGAG+AGG | + | chr5_4:50486457-50486476 | None:intergenic | 50.0% | |
| AAGATTCGGGGTTCCAATCC+TGG | - | chr5_4:50486844-50486863 | Msa0856130:intron | 50.0% | |
| TCAAGTGCATGATTGGGGGT+TGG | - | chr5_4:50487078-50487097 | Msa0856130:intron | 50.0% | |
| CAAGTGCATGATTGGGGGTT+GGG | - | chr5_4:50487079-50487098 | Msa0856130:intron | 50.0% | |
| CGCAGTCTAGATTGTGGTTG+TGG | - | chr5_4:50487466-50487485 | Msa0856130:intron | 50.0% | |
| GCTTCACGGTTAAGCACATC+AGG | + | chr5_4:50487511-50487530 | None:intergenic | 50.0% | |
| ! | GATGTCGTGAGGAGGTGTAA+TGG | + | chr5_4:50487724-50487743 | None:intergenic | 50.0% |
| CCAATAGTGATGTCGTGAGG+AGG | + | chr5_4:50487732-50487751 | None:intergenic | 50.0% | |
| CCTCCTCACGACATCACTAT+TGG | - | chr5_4:50487729-50487748 | Msa0856130:intron | 50.0% | |
| AGCCCAATAGTGATGTCGTG+AGG | + | chr5_4:50487735-50487754 | None:intergenic | 50.0% | |
| ACGACATCACTATTGGGCTC+TGG | - | chr5_4:50487736-50487755 | Msa0856130:intron | 50.0% | |
| ! | ATACACTGACTGTCCGACAC+TGG | - | chr5_4:50488747-50488766 | Msa0856130:intron | 50.0% |
| TGCGAGTGTCTAACCAGTGT+CGG | + | chr5_4:50488763-50488782 | None:intergenic | 50.0% | |
| !! | GCATCAATACCTCAGGTTGG+AGG | + | chr5_4:50488790-50488809 | None:intergenic | 50.0% |
| GAAACTTAGGTCCACAGCAG+AGG | - | chr5_4:50489172-50489191 | Msa0856130:intron | 50.0% | |
| TCCGATTAGGAGCTGATCAC+AGG | - | chr5_4:50489513-50489532 | Msa0856130:intron | 50.0% | |
| CCCAAATCCCACTCACTGTT+TGG | - | chr5_4:50489608-50489627 | Msa0856130:intron | 50.0% | |
| GACGAGACCAGCGAAGAACA+CGG | + | chr5_4:50486417-50486436 | None:intergenic | 55.0% | |
| ! | GTTCTTCGCTGGTCTCGTCA+AGG | - | chr5_4:50486418-50486437 | Msa0856130:three_prime_UTR | 55.0% |
| TGTCGCAGCCCATAGGTGTA+GGG | - | chr5_4:50487288-50487307 | Msa0856130:intron | 55.0% | |
| !! | ATTTCTTTGGTGGTGGCCGG+AGG | - | chr5_4:50488152-50488171 | Msa0856130:intron | 55.0% |
| CTACCACAGAACCTCTGCTG+TGG | + | chr5_4:50489186-50489205 | None:intergenic | 55.0% | |
| ACACTCGCCGTGTTCTTCGC+TGG | - | chr5_4:50486407-50486426 | Msa0856130:three_prime_UTR | 60.0% | |
| TGGGGGTTGGGTAGCTCACT+TGG | - | chr5_4:50487091-50487110 | Msa0856130:intron | 60.0% | |
| !! | AACCTGGTGTCGCAGCCCAT+AGG | - | chr5_4:50487281-50487300 | Msa0856130:intron | 60.0% |
| GTGTCGCAGCCCATAGGTGT+AGG | - | chr5_4:50487287-50487306 | Msa0856130:intron | 60.0% | |
| TCGCACACACCTCCAACCTG+AGG | - | chr5_4:50488778-50488797 | Msa0856130:intron | 60.0% | |
| GGTCCACAGCAGAGGTTCTG+TGG | - | chr5_4:50489180-50489199 | Msa0856130:intron | 60.0% | |
| ! | CACCTATGGGCTGCGACACC+AGG | + | chr5_4:50487286-50487305 | None:intergenic | 65.0% |
| ! | GGTGGTGGCCGGAGGATTCT+TGG | - | chr5_4:50488160-50488179 | Msa0856130:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 50486159 | 50490028 | 50486159 | ID=Msa0856130;Name=Msa0856130 |
| chr5_4 | mRNA | 50486159 | 50490028 | 50486159 | ID=Msa0856130-mRNA-1;Parent=Msa0856130;Name=Msa0856130-mRNA-1;_AED=0.44;_eAED=0.44;_QI=82|1|1|1|1|1|3|507|205 |
| chr5_4 | exon | 50486159 | 50486814 | 50486159 | ID=Msa0856130-mRNA-1:exon:15856;Parent=Msa0856130-mRNA-1 |
| chr5_4 | exon | 50487894 | 50488131 | 50487894 | ID=Msa0856130-mRNA-1:exon:15855;Parent=Msa0856130-mRNA-1 |
| chr5_4 | exon | 50489716 | 50490028 | 50489716 | ID=Msa0856130-mRNA-1:exon:15854;Parent=Msa0856130-mRNA-1 |
| chr5_4 | five_prime_UTR | 50489947 | 50490028 | 50489947 | ID=Msa0856130-mRNA-1:five_prime_utr;Parent=Msa0856130-mRNA-1 |
| chr5_4 | CDS | 50489716 | 50489946 | 50489716 | ID=Msa0856130-mRNA-1:cds;Parent=Msa0856130-mRNA-1 |
| chr5_4 | CDS | 50487894 | 50488131 | 50487894 | ID=Msa0856130-mRNA-1:cds;Parent=Msa0856130-mRNA-1 |
| chr5_4 | CDS | 50486666 | 50486814 | 50486666 | ID=Msa0856130-mRNA-1:cds;Parent=Msa0856130-mRNA-1 |
| chr5_4 | three_prime_UTR | 50486159 | 50486665 | 50486159 | ID=Msa0856130-mRNA-1:three_prime_utr;Parent=Msa0856130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
