AlfalfaGEDB | Msa0736910

M. sativa cultivar zhongmu-4 / Msa0736910

KEGG: -
GO: -
PFAM: PF00657.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0736910	XP_003616283.2	95.290	276	9	1	4	275	78	353	0.0	536

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0736910	sp\|Q9FHQ1\|GDL80_ARATH	72.692	260	67	1	4	259	80	339	1.13e-143	410

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0736910	G7K1P3	95.290	276	9	1	4	275	78	353	0.0	536

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0218810	Msa0736910	0.801481	8.821528e-49	-8.615850e-47
Msa0736910	Msa0815930	0.839069	1.975219e-57	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0736910	MtrunA17_Chr5g0434621	95.290	276	9	1	4	275	78	353	0.0	536
Msa0736910	MtrunA17_Chr3g0092131	45.487	277	143	5	7	275	79	355	2.65e-80	246
Msa0736910	MtrunA17_Chr4g0060811	46.124	258	133	3	7	258	83	340	4.80e-77	238
Msa0736910	MtrunA17_Chr3g0077571	40.076	262	150	3	4	260	81	340	5.40e-65	207
Msa0736910	MtrunA17_Chr8g0380041	40.698	258	142	7	13	261	91	346	3.53e-63	202
Msa0736910	MtrunA17_Chr7g0274991	38.023	263	156	4	4	259	85	347	3.29e-61	197
Msa0736910	MtrunA17_Chr4g0068441	39.130	276	155	5	6	271	87	359	1.09e-60	196
Msa0736910	MtrunA17_Chr2g0294301	39.015	264	151	4	7	260	88	351	4.37e-59	192
Msa0736910	MtrunA17_Chr3g0086641	36.327	245	148	4	25	261	109	353	1.20e-58	191
Msa0736910	MtrunA17_Chr4g0017431	34.848	264	164	4	2	257	80	343	5.44e-58	189

Showing 1 to 10 of 125 entries

Previous1 2 3 4 5…13Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0736910	AT5G37690.2	73.077	260	66	1	4	259	72	331	4.83e-145	410
Msa0736910	AT5G37690.1	72.692	260	67	1	4	259	80	339	1.15e-144	410
Msa0736910	AT1G74460.1	42.908	282	151	4	4	275	76	357	1.17e-76	237
Msa0736910	AT1G71691.1	39.850	266	152	4	7	266	8	271	1.23e-62	199
Msa0736910	AT1G71691.2	39.777	269	154	4	4	266	106	372	1.44e-61	199
Msa0736910	AT5G15720.3	41.176	272	143	7	3	260	48	316	2.17e-60	194
Msa0736910	AT5G15720.1	40.741	270	149	5	2	260	78	347	3.10e-60	195
Msa0736910	AT1G29670.1	37.453	267	155	7	13	271	92	354	1.68e-59	193
Msa0736910	AT1G29670.2	37.453	267	155	7	13	271	160	422	1.57e-58	192
Msa0736910	AT2G23540.1	40.081	247	137	5	24	259	123	369	5.79e-58	190

Showing 1 to 10 of 138 entries

Previous1 2 3 4 5…14Next

Find 47 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAAGAAGCAATCAC+AGG	0.588868	5_1:-53584887	Msa0736910:CDS
AAAGGGGTAAATTATGCATC+TGG	0.445959	5_1:-53585078	Msa0736910:CDS
AACCTTAGATCAACAACTTA+AGG	0.379257	5_1:-53584593	Msa0736910:intron
AATGAAGCCACATACTTCAT+TGG	0.342866	5_1:-53584830	Msa0736910:CDS
AATGTAGACACAAGCATTGG+AGG	0.524774	5_1:-53584103	Msa0736910:CDS
AATGTCGATGCCCTTCTTAA+AGG	0.305737	5_1:-53585096	Msa0736910:CDS
AATTATGCATCTGGTGGAGC+AGG	0.502570	5_1:-53585069	Msa0736910:CDS
ACCAATCCCAATGAAGTATG+TGG	0.567868	5_1:+53584823	None:intergenic
ACCGGAATGAATATGTATTT+TGG	0.087334	5_1:-53584048	Msa0736910:CDS
ACTCATCATGAGTATATTGT+TGG	0.446312	5_1:+53584635	None:intergenic

Showing 1 to 10 of 47 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTAAAGAAGCAATCAC+AGG	-	chr5_1:53584212-53584231	Msa0736910:intron	30.0%
CTAGTAAACTACATTTATGC+AGG	-	chr5_1:53584393-53584412	Msa0736910:CDS	30.0%
ACTCATCATGAGTATATTGT+TGG	+	chr5_1:53584467-53584486	None:intergenic	30.0%
AACCTTAGATCAACAACTTA+AGG	-	chr5_1:53584506-53584525	Msa0736910:intron	30.0%
TTGGATTTAACTCTTTGTGA+TGG	+	chr5_1:53584682-53584701	None:intergenic	30.0%
CTAATCATCAAACTAAACCA+TGG	-	chr5_1:53584766-53584785	Msa0736910:intron	30.0%
ATCGATAATCCATCTACTTA+TGG	-	chr5_1:53584844-53584863	Msa0736910:CDS	30.0%
ATAACCTTAAGCGTAATGTA+AGG	+	chr5_1:53584889-53584908	None:intergenic	30.0%
ACTCAAAGTTATGCAAAAAC+CGG	-	chr5_1:53585033-53585052	Msa0736910:intron	30.0%
CCCAAAATACATATTCATTC+CGG	+	chr5_1:53585055-53585074	None:intergenic	30.0%

Showing 1 to 10 of 122 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	53583943	53585178	53583943	ID=Msa0736910;Name=Msa0736910
chr5_1	mRNA	53583943	53585178	53583943	ID=Msa0736910-mRNA-1;Parent=Msa0736910;Name=Msa0736910-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.75\|0.2\|1\|0.75\|0.8\|5\|0\|275
chr5_1	exon	53583943	53584154	53583943	ID=Msa0736910-mRNA-1:exon:15120;Parent=Msa0736910-mRNA-1
chr5_1	exon	53584256	53584493	53584256	ID=Msa0736910-mRNA-1:exon:15119;Parent=Msa0736910-mRNA-1
chr5_1	exon	53584594	53584706	53584594	ID=Msa0736910-mRNA-1:exon:15118;Parent=Msa0736910-mRNA-1
chr5_1	exon	53584825	53584951	53584825	ID=Msa0736910-mRNA-1:exon:15117;Parent=Msa0736910-mRNA-1
chr5_1	exon	53585041	53585178	53585041	ID=Msa0736910-mRNA-1:exon:15116;Parent=Msa0736910-mRNA-1
chr5_1	CDS	53585041	53585178	53585041	ID=Msa0736910-mRNA-1:cds;Parent=Msa0736910-mRNA-1
chr5_1	CDS	53584825	53584951	53584825	ID=Msa0736910-mRNA-1:cds;Parent=Msa0736910-mRNA-1
chr5_1	CDS	53584594	53584706	53584594	ID=Msa0736910-mRNA-1:cds;Parent=Msa0736910-mRNA-1
chr5_1	CDS	53584256	53584493	53584256	ID=Msa0736910-mRNA-1:cds;Parent=Msa0736910-mRNA-1
chr5_1	CDS	53583943	53584154	53583943	ID=Msa0736910-mRNA-1:cds;Parent=Msa0736910-mRNA-1

Gene Sequence

>Msa0736910

CATTTTGCAGCATCAAAGCTTGGAATTCAATCACCACCAGCTTATTTATCAGTGCCTCAAAATGTCGATGCCCTTCTTAAAGGGGTAAATTATGCATCTGGTGGAGCAGGAATTCTCAATGACACGGGACTTTACTTTATTCAGAGACTGACTCTTGATGATCAAATAAAAAGTTTCAAGAAAACTAAAGAAGCAATCACAGGAAAATTGGGTGAAGCTGCTGCTAACAAGCATTTCAATGAAGCCACATACTTCATTGGGATTGGCAGCAATGATTATGTCAATAATTTCTTGCAGCCGTTTATGGCAGATGGCCAACAATATACTCATGATGAGTTCATAGAGCTCTTAATCTCAACCTTAGATCAACAACTTAAGCTAGGAGCACAAAAAATGGTTTTTCACGGACTTGGTCCACTCGGTTGTATTCCATCACAAAGAGTTAAATCCAAACGAGGCCAATGTCTAAAGCAAGTTAATGAATGGATTCAACAATTCAACTCTAAAGTACAGAAGCTAATCATCAAACTAAACCATGGTCTTCCAAATGCAAAACTTGTCTTTGCAGACACCTATCCTTTAGTTCTCGACTTAATCGATAATCCATCTACTTATGGTTTTAAAGTTTCAAATACATCTTGTTGCAATGTAGACACAAGCATTGGAGGTTTATGCTTACCAAACTCAAAGTTATGCAAAAACCGGAATGAATATGTATTTTGGGATGCATTTCATCCATCAGATGCAGCAAATGCTATTCTAGCAGAGAAATTCTTCTCTAGTCTTTTCACATCAGCTCCATCTGCAGCACCCAGCCCTTCCCCTTAA

Protein sequence

>Msa0736910

HFAASKLGIQSPPAYLSVPQNVDALLKGVNYASGGAGILNDTGLYFIQRLTLDDQIKSFKKTKEAITGKLGEAAANKHFNEATYFIGIGSNDYVNNFLQPFMADGQQYTHDEFIELLISTLDQQLKLGAQKMVFHGLGPLGCIPSQRVKSKRGQCLKQVNEWIQQFNSKVQKLIIKLNHGLPNAKLVFADTYPLVLDLIDNPSTYGFKVSNTSCCNVDTSIGGLCLPNSKLCKNRNEYVFWDAFHPSDAANAILAEKFFSSLFTSAPSAAPSPSP*