AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0218810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0218810 MtrunA17_Chr2g0321081 98.851 174 2 0 1 174 1 174 1.37e-123 345
Msa0218810 MtrunA17_Chr7g0265921 67.742 155 48 1 20 174 14 166 8.67e-62 188
Msa0218810 MtrunA17_Chr1g0198271 56.329 158 68 1 17 173 11 168 4.65e-51 161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0218810 AT2G27740.1 59.649 171 68 1 1 171 1 170 4.84e-68 205
Msa0218810 AT2G36410.2 67.647 136 44 0 38 173 57 192 2.09e-61 189
Msa0218810 AT3G52920.2 68.889 135 42 0 38 172 28 162 4.09e-61 187
Msa0218810 AT3G09980.1 70.139 144 43 0 31 174 35 178 9.39e-60 184
Msa0218810 AT2G36410.1 66.187 139 44 1 38 173 57 195 2.51e-59 183
Msa0218810 AT3G52920.1 67.391 138 42 1 38 172 28 165 6.33e-59 182
Msa0218810 AT5G03660.1 66.418 134 45 0 38 171 36 169 2.24e-49 157
Msa0218810 AT3G52900.1 51.974 152 73 0 23 174 13 164 1.52e-48 155
Msa0218810 AT2G36355.1 51.299 154 69 2 22 173 5 154 1.73e-44 144
Msa0218810 AT2G27740.2 53.659 123 56 1 1 123 1 122 1.16e-41 136
Msa0218810 AT5G03660.3 63.793 116 42 0 38 153 36 151 8.83e-40 132
Msa0218810 AT2G36410.3 66.279 86 29 0 38 123 57 142 3.30e-35 120
Msa0218810 AT5G03660.2 53.731 134 40 1 38 171 36 147 1.00e-31 112
Msa0218810 AT2G36355.3 62.651 83 31 0 91 173 1 83 1.19e-30 107
Msa0218810 AT2G36355.2 61.628 86 33 0 88 173 27 112 1.47e-30 107
Msa0218810 AT2G36355.4 44.144 111 55 3 22 130 5 110 3.17e-22 87.0

Find 41 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCTAACCTCCACTAATT+TGG 0.202427 2_1:-66297072 None:intergenic
AGAAATTGAGAGAAGAAAAT+TGG 0.229998 2_1:+66295711 Msa0218810:CDS
ATTGCAACATCCTTCCTCTT+TGG 0.283049 2_1:-66296382 None:intergenic
AATTAGGATATTTGACTCTT+TGG 0.288930 2_1:+66297473 Msa0218810:three_prime_UTR
TTTCATCTCTTCTTGGACTC+TGG 0.297684 2_1:-66295636 None:intergenic
GGGTCAAACCTGCCAGAAAA+AGG 0.317850 2_1:+66296450 Msa0218810:CDS
GTGCAACATGTGAAGAATTC+AGG 0.351410 2_1:+66295598 Msa0218810:CDS
ACTCTTCTTTCCTCTACCTT+AGG 0.358190 2_1:-66295453 None:intergenic
TCTAGCAATGTTTAGAGAAA+AGG 0.359449 2_1:+66295684 Msa0218810:CDS
TTCTGGCAGGTTTGACCCAA+TGG 0.366095 2_1:-66296445 None:intergenic
AAAATTGGAGGTTAGAGATA+AGG 0.419428 2_1:+66295726 Msa0218810:CDS
GAGTCCAAGAAGAGATGAAA+AGG 0.433573 2_1:+66295639 Msa0218810:CDS
TAACAAAGAGTTAAAGCCAT+TGG 0.438266 2_1:+66296429 Msa0218810:CDS
TTTCAAAGAAAAGAGAAAAC+AGG 0.450500 2_1:+66295481 Msa0218810:five_prime_UTR
AACAAAGAGTTAAAGCCATT+GGG 0.451012 2_1:+66296430 Msa0218810:CDS
AGAAATTGCATAGGAGATTG+AGG 0.462032 2_1:+66296348 Msa0218810:intron
AGAGTCAAATATCCTAATTA+CGG 0.465424 2_1:-66297469 None:intergenic
GAGGATAAGGATGAAGAAGC+TGG 0.468797 2_1:+66297222 Msa0218810:CDS
TCAACTTGTTACCAAATTAG+TGG 0.474598 2_1:+66297061 Msa0218810:CDS
GAAATTGCATAGGAGATTGA+GGG 0.490039 2_1:+66296349 Msa0218810:intron
TTTATAAGCACCTAAGGTAG+AGG 0.505239 2_1:+66295443 Msa0218810:five_prime_UTR
GATAAGGTTCATGCTCATCT+TGG 0.506717 2_1:+66295742 Msa0218810:CDS
TCATCTTGGTCGAGTCGAAA+AGG 0.517837 2_1:+66295756 Msa0218810:CDS
TGACTGAAAGTGAGAGGATA+AGG 0.518680 2_1:+66297209 Msa0218810:CDS
AAGAAGAGATGAAAAGGAAG+AGG 0.527146 2_1:+66295645 Msa0218810:CDS
AGGATATTTGACTCTTTGGT+AGG 0.530587 2_1:+66297477 Msa0218810:three_prime_UTR
AATTGAGAGAAGAAAATTGG+AGG 0.531288 2_1:+66295714 Msa0218810:CDS
CGAAAAGGAAACAAAGCGAT+TGG 0.535815 2_1:+66295771 Msa0218810:CDS
TGAGATTTGTGGAGCAGCAA+TGG 0.538281 2_1:+66295531 Msa0218810:exon
GCTAGTGAAAGTAACCTTGT+GGG 0.539376 2_1:+66297285 Msa0218810:three_prime_UTR
AGAATACAATGAAGCTCTTG+AGG 0.569694 2_1:+66297010 Msa0218810:CDS
TTTGACTCTTTGGTAGGACC+TGG 0.570087 2_1:+66297483 Msa0218810:three_prime_UTR
AAAATTCTTATCATTTGATG+TGG 0.575826 2_1:+66297326 Msa0218810:three_prime_UTR
TGCTAGTGAAAGTAACCTTG+TGG 0.598635 2_1:+66297284 Msa0218810:three_prime_UTR
TTTCACAGATCCAAAGAGGA+AGG 0.618763 2_1:+66296372 Msa0218810:CDS
AGGGTTTCACAGATCCAAAG+AGG 0.622777 2_1:+66296368 Msa0218810:CDS
AGCTTGTGACTGAAAGTGAG+AGG 0.623994 2_1:+66297203 Msa0218810:intron
ACTTGTTACCAAATTAGTGG+AGG 0.627774 2_1:+66297064 Msa0218810:CDS
AACATCACACTGAACCCACA+AGG 0.659909 2_1:-66297299 None:intergenic
GATAAGGATGAAGAAGCTGG+AGG 0.694341 2_1:+66297225 Msa0218810:CDS
AGTTAGAAAGAAGATAGACA+TGG 0.715757 2_1:+66296405 Msa0218810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTAAAAACAATGTA+CGG - chr2_1:66296905-66296924 None:intergenic 10.0%
!!! TATTTTTTAAAAACAATGTA+CGG - chr2_1:66296905-66296924 None:intergenic 10.0%
!! TTTAATATTGTAGAAAATCA+CGG + chr2_1:66296011-66296030 Msa0218810:intron 15.0%
!! CAAACAAAGATTATTTATAA+TGG - chr2_1:66296328-66296347 None:intergenic 15.0%
!! TTATAATATCTTTACAACAT+AGG + chr2_1:66296520-66296539 Msa0218810:intron 15.0%
!! GAAATTAAAGCAAATAATTA+AGG - chr2_1:66296627-66296646 None:intergenic 15.0%
!!! AATTATTTGCTTTAATTTCT+TGG + chr2_1:66296628-66296647 Msa0218810:intron 15.0%
!! ATATGTTTATTTAGTTGTTT+AGG + chr2_1:66296691-66296710 Msa0218810:intron 15.0%
!!! TTGTGAAACTATATATTTTT+GGG + chr2_1:66296975-66296994 Msa0218810:intron 15.0%
!! TTTAATATTGTAGAAAATCA+CGG + chr2_1:66296011-66296030 Msa0218810:intron 15.0%
!! CAAACAAAGATTATTTATAA+TGG - chr2_1:66296328-66296347 None:intergenic 15.0%
!! TTATAATATCTTTACAACAT+AGG + chr2_1:66296520-66296539 Msa0218810:intron 15.0%
!! GAAATTAAAGCAAATAATTA+AGG - chr2_1:66296627-66296646 None:intergenic 15.0%
!!! AATTATTTGCTTTAATTTCT+TGG + chr2_1:66296628-66296647 Msa0218810:intron 15.0%
!! ATATGTTTATTTAGTTGTTT+AGG + chr2_1:66296691-66296710 Msa0218810:intron 15.0%
!!! TTGTGAAACTATATATTTTT+GGG + chr2_1:66296975-66296994 Msa0218810:intron 15.0%
!!! TTGTTTGTTTGGTTTTTTAT+TGG + chr2_1:66295861-66295880 Msa0218810:intron 20.0%
!!! TTCATTTGTTTGGTTTTTAT+TGG + chr2_1:66295918-66295937 Msa0218810:intron 20.0%
!! ATTAAAGCAAATAATTAAGG+TGG - chr2_1:66296624-66296643 None:intergenic 20.0%
!!! CTTTTGATGACATAATATAT+GGG - chr2_1:66296655-66296674 None:intergenic 20.0%
!!! CTTGTGAAACTATATATTTT+TGG + chr2_1:66296974-66296993 Msa0218810:intron 20.0%
!!! TGTGAAACTATATATTTTTG+GGG + chr2_1:66296976-66296995 Msa0218810:intron 20.0%
!! AAAAAAGAAATATGTTAGCT+AGG - chr2_1:66297148-66297167 None:intergenic 20.0%
!! AAAATTCTTATCATTTGATG+TGG + chr2_1:66297326-66297345 Msa0218810:three_prime_UTR 20.0%
!!! TTGTTTGTTTGGTTTTTTAT+TGG + chr2_1:66295861-66295880 Msa0218810:intron 20.0%
!!! TTCATTTGTTTGGTTTTTAT+TGG + chr2_1:66295918-66295937 Msa0218810:intron 20.0%
!! ATTAAAGCAAATAATTAAGG+TGG - chr2_1:66296624-66296643 None:intergenic 20.0%
!!! CTTTTGATGACATAATATAT+GGG - chr2_1:66296655-66296674 None:intergenic 20.0%
!!! CTTGTGAAACTATATATTTT+TGG + chr2_1:66296974-66296993 Msa0218810:intron 20.0%
!!! TGTGAAACTATATATTTTTG+GGG + chr2_1:66296976-66296995 Msa0218810:intron 20.0%
!! AAAAAAGAAATATGTTAGCT+AGG - chr2_1:66297148-66297167 None:intergenic 20.0%
!! AAAATTCTTATCATTTGATG+TGG + chr2_1:66297326-66297345 Msa0218810:three_prime_UTR 20.0%
!!! TTTTGTTTTATAAGCACCTA+AGG + chr2_1:66295437-66295456 Msa0218810:five_prime_UTR 25.0%
! TTTCAAAGAAAAGAGAAAAC+AGG + chr2_1:66295481-66295500 Msa0218810:five_prime_UTR 25.0%
!! AAAAAGTGTATTGAGATTTG+TGG + chr2_1:66295520-66295539 Msa0218810:five_prime_UTR 25.0%
! AGAAATTGAGAGAAGAAAAT+TGG + chr2_1:66295711-66295730 Msa0218810:CDS 25.0%
! ATGATGTTTCATTGTTTGTT+TGG + chr2_1:66295850-66295869 Msa0218810:intron 25.0%
! TGTTCAAAGTTTCATTTGTT+TGG + chr2_1:66295908-66295927 Msa0218810:intron 25.0%
! TGTGCAAAGTTTCAAAATAA+TGG + chr2_1:66295961-66295980 Msa0218810:intron 25.0%
! ATTTCAACGTTATATTGTCA+CGG - chr2_1:66296082-66296101 None:intergenic 25.0%
! ACAATATAACGTTGAAATCA+CGG + chr2_1:66296084-66296103 Msa0218810:intron 25.0%
! TAAAACTAAAGCTTAATTCC+TGG - chr2_1:66296148-66296167 None:intergenic 25.0%
! TTACATTTGATCTATAGTCA+AGG + chr2_1:66296165-66296184 Msa0218810:intron 25.0%
! TATCAAAAGCAAAACACATT+GGG - chr2_1:66296570-66296589 None:intergenic 25.0%
! ATATCAAAAGCAAAACACAT+TGG - chr2_1:66296571-66296590 None:intergenic 25.0%
!!! CCTTTTGATGACATAATATA+TGG - chr2_1:66296656-66296675 None:intergenic 25.0%
! CCATATATTATGTCATCAAA+AGG + chr2_1:66296653-66296672 Msa0218810:intron 25.0%
! TATATTATGTCATCAAAAGG+AGG + chr2_1:66296656-66296675 Msa0218810:intron 25.0%
! CAATGAGAAAAACAAAGAAA+AGG + chr2_1:66297037-66297056 Msa0218810:CDS 25.0%
!!! AATGTATTTTGCTGACTTTA+GGG + chr2_1:66297363-66297382 Msa0218810:three_prime_UTR 25.0%
!! TGTTTAATGCACACTTTTAT+TGG - chr2_1:66297397-66297416 None:intergenic 25.0%
! AGAGTCAAATATCCTAATTA+CGG - chr2_1:66297472-66297491 None:intergenic 25.0%
! AATTAGGATATTTGACTCTT+TGG + chr2_1:66297473-66297492 Msa0218810:three_prime_UTR 25.0%
!!! TTTTGTTTTATAAGCACCTA+AGG + chr2_1:66295437-66295456 Msa0218810:five_prime_UTR 25.0%
! TTTCAAAGAAAAGAGAAAAC+AGG + chr2_1:66295481-66295500 Msa0218810:five_prime_UTR 25.0%
!! AAAAAGTGTATTGAGATTTG+TGG + chr2_1:66295520-66295539 Msa0218810:five_prime_UTR 25.0%
! AGAAATTGAGAGAAGAAAAT+TGG + chr2_1:66295711-66295730 Msa0218810:CDS 25.0%
! ATGATGTTTCATTGTTTGTT+TGG + chr2_1:66295850-66295869 Msa0218810:intron 25.0%
! TGTTCAAAGTTTCATTTGTT+TGG + chr2_1:66295908-66295927 Msa0218810:intron 25.0%
! TGTGCAAAGTTTCAAAATAA+TGG + chr2_1:66295961-66295980 Msa0218810:intron 25.0%
! ATTTCAACGTTATATTGTCA+CGG - chr2_1:66296082-66296101 None:intergenic 25.0%
! ACAATATAACGTTGAAATCA+CGG + chr2_1:66296084-66296103 Msa0218810:intron 25.0%
! TAAAACTAAAGCTTAATTCC+TGG - chr2_1:66296148-66296167 None:intergenic 25.0%
! TTACATTTGATCTATAGTCA+AGG + chr2_1:66296165-66296184 Msa0218810:intron 25.0%
! TATCAAAAGCAAAACACATT+GGG - chr2_1:66296570-66296589 None:intergenic 25.0%
! ATATCAAAAGCAAAACACAT+TGG - chr2_1:66296571-66296590 None:intergenic 25.0%
!!! CCTTTTGATGACATAATATA+TGG - chr2_1:66296656-66296675 None:intergenic 25.0%
! CCATATATTATGTCATCAAA+AGG + chr2_1:66296653-66296672 Msa0218810:intron 25.0%
! TATATTATGTCATCAAAAGG+AGG + chr2_1:66296656-66296675 Msa0218810:intron 25.0%
! CAATGAGAAAAACAAAGAAA+AGG + chr2_1:66297037-66297056 Msa0218810:CDS 25.0%
!!! AATGTATTTTGCTGACTTTA+GGG + chr2_1:66297363-66297382 Msa0218810:three_prime_UTR 25.0%
!! TGTTTAATGCACACTTTTAT+TGG - chr2_1:66297397-66297416 None:intergenic 25.0%
! AGAGTCAAATATCCTAATTA+CGG - chr2_1:66297472-66297491 None:intergenic 25.0%
! AATTAGGATATTTGACTCTT+TGG + chr2_1:66297473-66297492 Msa0218810:three_prime_UTR 25.0%
! TGCTGATCATATGATCTTTT+TGG - chr2_1:66295562-66295581 None:intergenic 30.0%
TCTAGCAATGTTTAGAGAAA+AGG + chr2_1:66295684-66295703 Msa0218810:CDS 30.0%
AATTGAGAGAAGAAAATTGG+AGG + chr2_1:66295714-66295733 Msa0218810:CDS 30.0%
AAAATTGGAGGTTAGAGATA+AGG + chr2_1:66295726-66295745 Msa0218810:CDS 30.0%
CAAATTCAGTGTTTGTTTAC+TGG - chr2_1:66295817-66295836 None:intergenic 30.0%
AAGTTTCAAAATAATGGTCG+CGG + chr2_1:66295967-66295986 Msa0218810:intron 30.0%
CAATATTAAAGATTACTGCG+TGG - chr2_1:66296001-66296020 None:intergenic 30.0%
!!! CTGGTCAAGGTTTTAAAAAA+CGG - chr2_1:66296129-66296148 None:intergenic 30.0%
! CTTTGTTTGAGAAATTGCAT+AGG + chr2_1:66296339-66296358 Msa0218810:intron 30.0%
AGTTAGAAAGAAGATAGACA+TGG + chr2_1:66296405-66296424 Msa0218810:CDS 30.0%
TAACAAAGAGTTAAAGCCAT+TGG + chr2_1:66296429-66296448 Msa0218810:CDS 30.0%
AACAAAGAGTTAAAGCCATT+GGG + chr2_1:66296430-66296449 Msa0218810:CDS 30.0%
! TGGAAAATCTAACCTTTTTC+TGG - chr2_1:66296465-66296484 None:intergenic 30.0%
AACAGTTAGTACTAAACAGT+TGG - chr2_1:66296485-66296504 None:intergenic 30.0%
! TACAACATAGGATTTGTTCA+AGG + chr2_1:66296532-66296551 Msa0218810:intron 30.0%
AATTTGAATTCCGTCTGTTT+CGG - chr2_1:66296828-66296847 None:intergenic 30.0%
TTAAAAACAATGTACGGAAG+AGG - chr2_1:66296899-66296918 None:intergenic 30.0%
!!! CTATATATTTTTGGGGTTAC+AGG + chr2_1:66296983-66297002 Msa0218810:intron 30.0%
!! TCAACTTGTTACCAAATTAG+TGG + chr2_1:66297061-66297080 Msa0218810:CDS 30.0%
! CTTTGCATTATGTGAACTTT+TGG + chr2_1:66297177-66297196 Msa0218810:intron 30.0%
!!! CAATGTATTTTGCTGACTTT+AGG + chr2_1:66297362-66297381 Msa0218810:three_prime_UTR 30.0%
! TGCTGATCATATGATCTTTT+TGG - chr2_1:66295562-66295581 None:intergenic 30.0%
TCTAGCAATGTTTAGAGAAA+AGG + chr2_1:66295684-66295703 Msa0218810:CDS 30.0%
AATTGAGAGAAGAAAATTGG+AGG + chr2_1:66295714-66295733 Msa0218810:CDS 30.0%
AAAATTGGAGGTTAGAGATA+AGG + chr2_1:66295726-66295745 Msa0218810:CDS 30.0%
CAAATTCAGTGTTTGTTTAC+TGG - chr2_1:66295817-66295836 None:intergenic 30.0%
AAGTTTCAAAATAATGGTCG+CGG + chr2_1:66295967-66295986 Msa0218810:intron 30.0%
CAATATTAAAGATTACTGCG+TGG - chr2_1:66296001-66296020 None:intergenic 30.0%
!!! CTGGTCAAGGTTTTAAAAAA+CGG - chr2_1:66296129-66296148 None:intergenic 30.0%
! CTTTGTTTGAGAAATTGCAT+AGG + chr2_1:66296339-66296358 Msa0218810:intron 30.0%
AGTTAGAAAGAAGATAGACA+TGG + chr2_1:66296405-66296424 Msa0218810:CDS 30.0%
TAACAAAGAGTTAAAGCCAT+TGG + chr2_1:66296429-66296448 Msa0218810:CDS 30.0%
AACAAAGAGTTAAAGCCATT+GGG + chr2_1:66296430-66296449 Msa0218810:CDS 30.0%
! TGGAAAATCTAACCTTTTTC+TGG - chr2_1:66296465-66296484 None:intergenic 30.0%
AACAGTTAGTACTAAACAGT+TGG - chr2_1:66296485-66296504 None:intergenic 30.0%
! TACAACATAGGATTTGTTCA+AGG + chr2_1:66296532-66296551 Msa0218810:intron 30.0%
AATTTGAATTCCGTCTGTTT+CGG - chr2_1:66296828-66296847 None:intergenic 30.0%
TTAAAAACAATGTACGGAAG+AGG - chr2_1:66296899-66296918 None:intergenic 30.0%
!!! CTATATATTTTTGGGGTTAC+AGG + chr2_1:66296983-66297002 Msa0218810:intron 30.0%
!! TCAACTTGTTACCAAATTAG+TGG + chr2_1:66297061-66297080 Msa0218810:CDS 30.0%
! CTTTGCATTATGTGAACTTT+TGG + chr2_1:66297177-66297196 Msa0218810:intron 30.0%
!!! CAATGTATTTTGCTGACTTT+AGG + chr2_1:66297362-66297381 Msa0218810:three_prime_UTR 30.0%
TTTATAAGCACCTAAGGTAG+AGG + chr2_1:66295443-66295462 Msa0218810:five_prime_UTR 35.0%
! TCTTCCTTTTCATCTCTTCT+TGG - chr2_1:66295646-66295665 None:intergenic 35.0%
AAGAAGAGATGAAAAGGAAG+AGG + chr2_1:66295645-66295664 Msa0218810:CDS 35.0%
TTGTCACGGATATCAAATTG+TGG - chr2_1:66296068-66296087 None:intergenic 35.0%
!!! CGTTTTTTAAAACCTTGACC+AGG + chr2_1:66296127-66296146 Msa0218810:intron 35.0%
TAAAGCTTAATTCCTGGTCA+AGG - chr2_1:66296142-66296161 None:intergenic 35.0%
!! AACTAGCTTGTTTCAAACAC+TGG - chr2_1:66296218-66296237 None:intergenic 35.0%
AGAAATTGCATAGGAGATTG+AGG + chr2_1:66296348-66296367 Msa0218810:intron 35.0%
GAAATTGCATAGGAGATTGA+GGG + chr2_1:66296349-66296368 Msa0218810:intron 35.0%
!! AAATCTAACCTTTTTCTGGC+AGG - chr2_1:66296461-66296480 None:intergenic 35.0%
AGACTAAAGTCTAAGCAATG+TGG - chr2_1:66296596-66296615 None:intergenic 35.0%
CGGAATTCAAATTTCTCAGT+TGG + chr2_1:66296835-66296854 Msa0218810:intron 35.0%
AGAATACAATGAAGCTCTTG+AGG + chr2_1:66297010-66297029 Msa0218810:CDS 35.0%
! ACTTGTTACCAAATTAGTGG+AGG + chr2_1:66297064-66297083 Msa0218810:CDS 35.0%
ACTTCTAACCTCCACTAATT+TGG - chr2_1:66297075-66297094 None:intergenic 35.0%
! CTCGAATTTTCTCCGTAATT+AGG + chr2_1:66297457-66297476 Msa0218810:three_prime_UTR 35.0%
AGGATATTTGACTCTTTGGT+AGG + chr2_1:66297477-66297496 Msa0218810:three_prime_UTR 35.0%
TTTATAAGCACCTAAGGTAG+AGG + chr2_1:66295443-66295462 Msa0218810:five_prime_UTR 35.0%
! TCTTCCTTTTCATCTCTTCT+TGG - chr2_1:66295646-66295665 None:intergenic 35.0%
AAGAAGAGATGAAAAGGAAG+AGG + chr2_1:66295645-66295664 Msa0218810:CDS 35.0%
TTGTCACGGATATCAAATTG+TGG - chr2_1:66296068-66296087 None:intergenic 35.0%
!!! CGTTTTTTAAAACCTTGACC+AGG + chr2_1:66296127-66296146 Msa0218810:intron 35.0%
TAAAGCTTAATTCCTGGTCA+AGG - chr2_1:66296142-66296161 None:intergenic 35.0%
!! AACTAGCTTGTTTCAAACAC+TGG - chr2_1:66296218-66296237 None:intergenic 35.0%
AGAAATTGCATAGGAGATTG+AGG + chr2_1:66296348-66296367 Msa0218810:intron 35.0%
GAAATTGCATAGGAGATTGA+GGG + chr2_1:66296349-66296368 Msa0218810:intron 35.0%
!! AAATCTAACCTTTTTCTGGC+AGG - chr2_1:66296461-66296480 None:intergenic 35.0%
AGACTAAAGTCTAAGCAATG+TGG - chr2_1:66296596-66296615 None:intergenic 35.0%
CGGAATTCAAATTTCTCAGT+TGG + chr2_1:66296835-66296854 Msa0218810:intron 35.0%
AGAATACAATGAAGCTCTTG+AGG + chr2_1:66297010-66297029 Msa0218810:CDS 35.0%
! ACTTGTTACCAAATTAGTGG+AGG + chr2_1:66297064-66297083 Msa0218810:CDS 35.0%
ACTTCTAACCTCCACTAATT+TGG - chr2_1:66297075-66297094 None:intergenic 35.0%
! CTCGAATTTTCTCCGTAATT+AGG + chr2_1:66297457-66297476 Msa0218810:three_prime_UTR 35.0%
AGGATATTTGACTCTTTGGT+AGG + chr2_1:66297477-66297496 Msa0218810:three_prime_UTR 35.0%
ACTCTTCTTTCCTCTACCTT+AGG - chr2_1:66295456-66295475 None:intergenic 40.0%
GTGCAACATGTGAAGAATTC+AGG + chr2_1:66295598-66295617 Msa0218810:CDS 40.0%
TTTCATCTCTTCTTGGACTC+TGG - chr2_1:66295639-66295658 None:intergenic 40.0%
GAGTCCAAGAAGAGATGAAA+AGG + chr2_1:66295639-66295658 Msa0218810:CDS 40.0%
GATAAGGTTCATGCTCATCT+TGG + chr2_1:66295742-66295761 Msa0218810:CDS 40.0%
CGAAAAGGAAACAAAGCGAT+TGG + chr2_1:66295771-66295790 Msa0218810:CDS 40.0%
! AAATAATGGTCGCGGTTTTG+CGG + chr2_1:66295975-66295994 Msa0218810:intron 40.0%
TCAAATTGTGGTCGCTATTG+CGG - chr2_1:66296056-66296075 None:intergenic 40.0%
TTTCACAGATCCAAAGAGGA+AGG + chr2_1:66296372-66296391 Msa0218810:CDS 40.0%
ATTGCAACATCCTTCCTCTT+TGG - chr2_1:66296385-66296404 None:intergenic 40.0%
GTCAATCTCTTACCACCAAA+CGG - chr2_1:66296798-66296817 None:intergenic 40.0%
GACTTTGTAACCGAAACAGA+CGG + chr2_1:66296815-66296834 Msa0218810:intron 40.0%
TGACTGAAAGTGAGAGGATA+AGG + chr2_1:66297209-66297228 Msa0218810:CDS 40.0%
TGCTAGTGAAAGTAACCTTG+TGG + chr2_1:66297284-66297303 Msa0218810:three_prime_UTR 40.0%
GCTAGTGAAAGTAACCTTGT+GGG + chr2_1:66297285-66297304 Msa0218810:three_prime_UTR 40.0%
ACTCTTCTTTCCTCTACCTT+AGG - chr2_1:66295456-66295475 None:intergenic 40.0%
GTGCAACATGTGAAGAATTC+AGG + chr2_1:66295598-66295617 Msa0218810:CDS 40.0%
TTTCATCTCTTCTTGGACTC+TGG - chr2_1:66295639-66295658 None:intergenic 40.0%
GAGTCCAAGAAGAGATGAAA+AGG + chr2_1:66295639-66295658 Msa0218810:CDS 40.0%
GATAAGGTTCATGCTCATCT+TGG + chr2_1:66295742-66295761 Msa0218810:CDS 40.0%
CGAAAAGGAAACAAAGCGAT+TGG + chr2_1:66295771-66295790 Msa0218810:CDS 40.0%
! AAATAATGGTCGCGGTTTTG+CGG + chr2_1:66295975-66295994 Msa0218810:intron 40.0%
TCAAATTGTGGTCGCTATTG+CGG - chr2_1:66296056-66296075 None:intergenic 40.0%
TTTCACAGATCCAAAGAGGA+AGG + chr2_1:66296372-66296391 Msa0218810:CDS 40.0%
ATTGCAACATCCTTCCTCTT+TGG - chr2_1:66296385-66296404 None:intergenic 40.0%
GTCAATCTCTTACCACCAAA+CGG - chr2_1:66296798-66296817 None:intergenic 40.0%
GACTTTGTAACCGAAACAGA+CGG + chr2_1:66296815-66296834 Msa0218810:intron 40.0%
TGACTGAAAGTGAGAGGATA+AGG + chr2_1:66297209-66297228 Msa0218810:CDS 40.0%
TGCTAGTGAAAGTAACCTTG+TGG + chr2_1:66297284-66297303 Msa0218810:three_prime_UTR 40.0%
GCTAGTGAAAGTAACCTTGT+GGG + chr2_1:66297285-66297304 Msa0218810:three_prime_UTR 40.0%
TGAGATTTGTGGAGCAGCAA+TGG + chr2_1:66295531-66295550 Msa0218810:exon 45.0%
TCATCTTGGTCGAGTCGAAA+AGG + chr2_1:66295756-66295775 Msa0218810:CDS 45.0%
AGGGTTTCACAGATCCAAAG+AGG + chr2_1:66296368-66296387 Msa0218810:CDS 45.0%
TGCTTCTTGTTCCTTCCGTT+TGG + chr2_1:66296780-66296799 Msa0218810:intron 45.0%
TTCTTGTTCCTTCCGTTTGG+TGG + chr2_1:66296783-66296802 Msa0218810:intron 45.0%
ATCTCTTACCACCAAACGGA+AGG - chr2_1:66296794-66296813 None:intergenic 45.0%
AGCTTGTGACTGAAAGTGAG+AGG + chr2_1:66297203-66297222 Msa0218810:intron 45.0%
GAGGATAAGGATGAAGAAGC+TGG + chr2_1:66297222-66297241 Msa0218810:CDS 45.0%
GATAAGGATGAAGAAGCTGG+AGG + chr2_1:66297225-66297244 Msa0218810:CDS 45.0%
AACATCACACTGAACCCACA+AGG - chr2_1:66297302-66297321 None:intergenic 45.0%
TTTGACTCTTTGGTAGGACC+TGG + chr2_1:66297483-66297502 Msa0218810:three_prime_UTR 45.0%
TGAGATTTGTGGAGCAGCAA+TGG + chr2_1:66295531-66295550 Msa0218810:exon 45.0%
TCATCTTGGTCGAGTCGAAA+AGG + chr2_1:66295756-66295775 Msa0218810:CDS 45.0%
AGGGTTTCACAGATCCAAAG+AGG + chr2_1:66296368-66296387 Msa0218810:CDS 45.0%
TGCTTCTTGTTCCTTCCGTT+TGG + chr2_1:66296780-66296799 Msa0218810:intron 45.0%
TTCTTGTTCCTTCCGTTTGG+TGG + chr2_1:66296783-66296802 Msa0218810:intron 45.0%
ATCTCTTACCACCAAACGGA+AGG - chr2_1:66296794-66296813 None:intergenic 45.0%
AGCTTGTGACTGAAAGTGAG+AGG + chr2_1:66297203-66297222 Msa0218810:intron 45.0%
GAGGATAAGGATGAAGAAGC+TGG + chr2_1:66297222-66297241 Msa0218810:CDS 45.0%
GATAAGGATGAAGAAGCTGG+AGG + chr2_1:66297225-66297244 Msa0218810:CDS 45.0%
AACATCACACTGAACCCACA+AGG - chr2_1:66297302-66297321 None:intergenic 45.0%
TTTGACTCTTTGGTAGGACC+TGG + chr2_1:66297483-66297502 Msa0218810:three_prime_UTR 45.0%
!! AAATAAAATAAAATAAAATG+TGG + chr2_1:66296251-66296270 Msa0218810:intron 5.0%
!! AAATAAAATAAAATAAAATG+TGG + chr2_1:66296251-66296270 Msa0218810:intron 5.0%
TTCTGGCAGGTTTGACCCAA+TGG - chr2_1:66296448-66296467 None:intergenic 50.0%
GGGTCAAACCTGCCAGAAAA+AGG + chr2_1:66296450-66296469 Msa0218810:CDS 50.0%
TTCTGGCAGGTTTGACCCAA+TGG - chr2_1:66296448-66296467 None:intergenic 50.0%
GGGTCAAACCTGCCAGAAAA+AGG + chr2_1:66296450-66296469 Msa0218810:CDS 50.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 66295436 66297506 66295436 ID=Msa0218810;Name=Msa0218810
chr2_1 mRNA 66295436 66297506 66295436 ID=Msa0218810-mRNA-1;Parent=Msa0218810;Name=Msa0218810-mRNA-1;_AED=0.02;_eAED=0.02;_QI=114|1|1|1|1|1|4|227|174
chr2_1 exon 66295436 66295807 66295436 ID=Msa0218810-mRNA-1:exon:18630;Parent=Msa0218810-mRNA-1
chr2_1 exon 66296361 66296471 66296361 ID=Msa0218810-mRNA-1:exon:18631;Parent=Msa0218810-mRNA-1
chr2_1 exon 66297005 66297085 66297005 ID=Msa0218810-mRNA-1:exon:18632;Parent=Msa0218810-mRNA-1
chr2_1 exon 66297205 66297506 66297205 ID=Msa0218810-mRNA-1:exon:18633;Parent=Msa0218810-mRNA-1
chr2_1 five_prime_UTR 66295436 66295549 66295436 ID=Msa0218810-mRNA-1:five_prime_utr;Parent=Msa0218810-mRNA-1
chr2_1 CDS 66295550 66295807 66295550 ID=Msa0218810-mRNA-1:cds;Parent=Msa0218810-mRNA-1
chr2_1 CDS 66296361 66296471 66296361 ID=Msa0218810-mRNA-1:cds;Parent=Msa0218810-mRNA-1
chr2_1 CDS 66297005 66297085 66297005 ID=Msa0218810-mRNA-1:cds;Parent=Msa0218810-mRNA-1
chr2_1 CDS 66297205 66297279 66297205 ID=Msa0218810-mRNA-1:cds;Parent=Msa0218810-mRNA-1
chr2_1 three_prime_UTR 66297280 66297506 66297280 ID=Msa0218810-mRNA-1:three_prime_utr;Parent=Msa0218810-mRNA-1
Gene Sequence

>Msa0218810

ATGGCAACACCAAAAAGATCATATGATCAGCAACAACAACTACAGATTGTGCAACATGTGAAGAATTCAGGAATGATTAACAACATCCAGAGTCCAAGAAGAGATGAAAAGGAAGAGGAAATGTCAAGATCAGTTCTAGCAATGTTTAGAGAAAAGGAAGAAGAAATTGAGAGAAGAAAATTGGAGGTTAGAGATAAGGTTCATGCTCATCTTGGTCGAGTCGAAAAGGAAACAAAGCGATTGGCTGAGATAAGAGAAGAGATTGAGGGTTTCACAGATCCAAAGAGGAAGGATGTTGCAATAGTTAGAAAGAAGATAGACATGGTTAACAAAGAGTTAAAGCCATTGGGTCAAACCTGCCAGAAAAAGGAGAGAGAATACAATGAAGCTCTTGAGGCTTTCAATGAGAAAAACAAAGAAAAGGCTCAACTTGTTACCAAATTAGTGGAGCTTGTGACTGAAAGTGAGAGGATAAGGATGAAGAAGCTGGAGGATCTAAGCAAAAATATAGATACACTTCACTAA

Protein sequence

>Msa0218810

MATPKRSYDQQQQLQIVQHVKNSGMINNIQSPRRDEKEEEMSRSVLAMFREKEEEIERRKLEVRDKVHAHLGRVEKETKRLAEIREEIEGFTDPKRKDVAIVRKKIDMVNKELKPLGQTCQKKEREYNEALEAFNEKNKEKAQLVTKLVELVTESERIRMKKLEDLSKNIDTLH*