Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737440 | AES99363.2 | 95.881 | 437 | 13 | 1 | 1 | 437 | 1 | 432 | 0.0 | 866 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737440 | sp|Q8DG98|RLMN_THEVB | 54.412 | 340 | 146 | 3 | 48 | 387 | 2 | 332 | 8.96e-129 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737440 | G7KBR0 | 95.881 | 437 | 13 | 1 | 1 | 437 | 1 | 432 | 0.0 | 866 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0628100 | Msa0737440 | 0.813490 | 2.493570e-51 | -8.615850e-47 |
| Msa0737440 | Msa0779240 | 0.832029 | 1.193375e-55 | -8.615850e-47 |
| Msa0737440 | Msa0816640 | 0.823977 | 1.035820e-53 | -8.615850e-47 |
| Msa0737440 | Msa1177240 | 0.803462 | 3.446704e-49 | -8.615850e-47 |
| Msa0737440 | Msa1317030 | 0.807872 | 4.087296e-50 | -8.615850e-47 |
| Msa0583740 | Msa0737440 | 0.800456 | 1.428887e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737440 | MtrunA17_Chr5g0435221 | 96.359 | 412 | 10 | 1 | 1 | 412 | 1 | 407 | 0.0 | 821 |
| Msa0737440 | MtrunA17_Chr5g0393761 | 39.510 | 286 | 157 | 6 | 122 | 395 | 86 | 367 | 8.47e-54 | 184 |
| Msa0737440 | MtrunA17_Chr8g0365351 | 35.342 | 365 | 202 | 11 | 46 | 385 | 81 | 436 | 1.92e-46 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737440 | AT2G39670.1 | 69.007 | 413 | 119 | 4 | 8 | 413 | 17 | 427 | 0.0 | 563 |
| Msa0737440 | AT2G39670.2 | 68.269 | 416 | 120 | 5 | 8 | 413 | 17 | 430 | 0.0 | 554 |
| Msa0737440 | AT3G19630.1 | 40.690 | 290 | 152 | 8 | 120 | 393 | 74 | 359 | 4.94e-57 | 193 |
| Msa0737440 | AT1G60230.1 | 35.000 | 360 | 218 | 9 | 34 | 385 | 82 | 433 | 9.59e-54 | 186 |
Find 114 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAACTTCTTTATTGTATT+TGG | 0.102949 | 5_1:-54697199 | None:intergenic |
| GGTGACTAATGTAGTCTTTA+TGG | 0.145319 | 5_1:+54696192 | Msa0737440:CDS |
| CCTCAGTCTCAGGTTCTTCT+TGG | 0.188284 | 5_1:+54694346 | Msa0737440:CDS |
| CAATTGTCTCCCTTAGTTTC+TGG | 0.213313 | 5_1:-54697506 | None:intergenic |
| TTCTTGTAGGATATACAAAT+TGG | 0.226433 | 5_1:+54697142 | Msa0737440:intron |
| GAGCCTTCTATTGGATTAAA+AGG | 0.231828 | 5_1:-54697819 | None:intergenic |
| TAGAAAGCCTTTAGATTCTT+TGG | 0.238927 | 5_1:+54698429 | Msa0737440:CDS |
| GGAATCCCAGCTTCCAAATA+TGG | 0.267536 | 5_1:+54698124 | Msa0737440:CDS |
| CTGAGTTTCGCCGTCCTTAC+AGG | 0.268932 | 5_1:+54697841 | Msa0737440:CDS |
| GTAACTGCAAGGTCCATATT+TGG | 0.284371 | 5_1:-54698137 | None:intergenic |
| TTGCAGTGCCTCAGGCATTT+AGG | 0.286812 | 5_1:+54695025 | Msa0737440:intron |
| ATTGTTGGCAATTAGTGATT+AGG | 0.287066 | 5_1:+54698515 | Msa0737440:CDS |
| GGCACACCATTGCTTGAATA+AGG | 0.298869 | 5_1:+54696255 | Msa0737440:CDS |
| CGAAACTCAGAGCCTTCTAT+TGG | 0.317774 | 5_1:-54697828 | None:intergenic |
| GTGCCCCAAGTACTGCCTTC+AGG | 0.344031 | 5_1:-54696237 | None:intergenic |
| GAACCCTTCTCATCTTCATT+AGG | 0.357570 | 5_1:-54695658 | None:intergenic |
| GCAAGCATTTGTTAATGCTT+TGG | 0.362056 | 5_1:+54697980 | Msa0737440:CDS |
| GCTAAACTACTACATGAATA+TGG | 0.366452 | 5_1:+54697771 | Msa0737440:CDS |
| GTCTCCCTTAGTTTCTGGTT+AGG | 0.377471 | 5_1:-54697501 | None:intergenic |
| TGCTTGCATTGCAGTGCCTC+AGG | 0.385823 | 5_1:+54695017 | Msa0737440:intron |
| GTGACTAATGTAGTCTTTAT+GGG | 0.396455 | 5_1:+54696193 | Msa0737440:CDS |
| TTTGCAGTTGTTATTGAAGT+TGG | 0.398916 | 5_1:+54695603 | Msa0737440:intron |
| TGCATTTGCGTCCAGTCCTC+TGG | 0.405368 | 5_1:-54698036 | None:intergenic |
| TTGCGTCCAGTCCTCTGGTT+TGG | 0.406021 | 5_1:-54698031 | None:intergenic |
| AAACCTGCTCAACAATTTCA+TGG | 0.407549 | 5_1:-54695909 | None:intergenic |
| TATCATACTGCTTTCCTGTA+AGG | 0.409585 | 5_1:-54697855 | None:intergenic |
| CGCAGACTCTGACAACAATC+TGG | 0.425413 | 5_1:+54698103 | Msa0737440:CDS |
| AGGAATGAGCTTGAGGAAGC+TGG | 0.428323 | 5_1:+54695045 | Msa0737440:CDS |
| GCAACAACAGTGTTGAAAAC+TGG | 0.434797 | 5_1:-54695087 | None:intergenic |
| ATGCTCCTAACCAGAAACTA+AGG | 0.440088 | 5_1:+54697496 | Msa0737440:CDS |
| TTAAACCTGAAGGCAGTACT+TGG | 0.440485 | 5_1:+54696232 | Msa0737440:CDS |
| AACACTGTTGTTGCAACGGA+TGG | 0.445377 | 5_1:+54695096 | Msa0737440:CDS |
| CAAGGTCCATATTTGGAAGC+TGG | 0.447943 | 5_1:-54698130 | None:intergenic |
| CAGCACAATTCCTCAGTCTC+AGG | 0.454273 | 5_1:+54694336 | Msa0737440:CDS |
| GAGCCATGAAATTGTTGAGC+AGG | 0.455181 | 5_1:+54695906 | Msa0737440:CDS |
| CTACCACGAGCAAATATTGT+TGG | 0.458499 | 5_1:+54698500 | Msa0737440:CDS |
| AATGTAGTCTTTATGGGAAT+GGG | 0.461630 | 5_1:+54696199 | Msa0737440:CDS |
| GTGCGAGGGGCATGGAATAG+TGG | 0.472551 | 5_1:-54694234 | None:intergenic |
| TCTTGTAGGATATACAAATT+GGG | 0.477367 | 5_1:+54697143 | Msa0737440:intron |
| AGAAGAAGAAGAAGTTGCGA+AGG | 0.479599 | 5_1:-54694296 | None:intergenic |
| TTTCATAAGAAACAACCTAC+TGG | 0.488171 | 5_1:+54698466 | Msa0737440:CDS |
| TGCAACGGATGGAACTGTTA+AGG | 0.495578 | 5_1:+54695107 | Msa0737440:CDS |
| TAGATTCTTTGGCAGCTAAG+AGG | 0.497835 | 5_1:+54698440 | Msa0737440:CDS |
| AAGGTCCATATTTGGAAGCT+GGG | 0.504412 | 5_1:-54698129 | None:intergenic |
| GCGGCACGTGTGCGAGGTGA+AGG | 0.504678 | 5_1:-54694268 | None:intergenic |
| CATTCACCTTATTCAAGCAA+TGG | 0.504951 | 5_1:-54696261 | None:intergenic |
| AATTTACCTGACCAAAATCA+AGG | 0.507652 | 5_1:-54694399 | None:intergenic |
| AGAAGAAGTTGCGAAGGAAA+TGG | 0.508278 | 5_1:-54694290 | None:intergenic |
| TAATGTAGTCTTTATGGGAA+TGG | 0.509539 | 5_1:+54696198 | Msa0737440:CDS |
| CAATTACCTCACAGCTAAAG+TGG | 0.519075 | 5_1:-54697239 | None:intergenic |
| CACCACACGTGCGAGGGGCA+TGG | 0.521716 | 5_1:-54694242 | None:intergenic |
| GTTTCTGGTTAGGAGCATGT+AGG | 0.523254 | 5_1:-54697491 | None:intergenic |
| GCGTTTGAACACCTCCTCAA+TGG | 0.524945 | 5_1:-54696167 | None:intergenic |
| GACAGCATGTGTCTCATCAC+AGG | 0.527434 | 5_1:+54695690 | Msa0737440:CDS |
| TAAACCTGAAGGCAGTACTT+GGG | 0.530652 | 5_1:+54696233 | Msa0737440:CDS |
| TCTTCTTGGCTTATCCGAAA+CGG | 0.535280 | 5_1:+54694360 | Msa0737440:CDS |
| TTCCATGCCCCTCGCACGTG+TGG | 0.543811 | 5_1:+54694240 | Msa0737440:CDS |
| AAGTGCAAAATCTTACCCAT+TGG | 0.544136 | 5_1:+54697533 | Msa0737440:CDS |
| TTTATCATCTTATATACAAG+AGG | 0.550624 | 5_1:+54694554 | Msa0737440:CDS |
| CTTGCATAAGTGCATCCAAT+GGG | 0.551233 | 5_1:-54697548 | None:intergenic |
| TTAGCTGCCAAAGAATCTAA+AGG | 0.556580 | 5_1:-54698436 | None:intergenic |
| TGCACTTATGCAAGACTGCA+AGG | 0.557442 | 5_1:+54697557 | Msa0737440:CDS |
| ATGCAGCTTGTGGTCAGCTA+CGG | 0.561024 | 5_1:+54698054 | Msa0737440:CDS |
| ACCTAAAAGTGCATATTCAA+AGG | 0.561121 | 5_1:-54697610 | None:intergenic |
| AGATATTCAAGAGTTTACTC+AGG | 0.562671 | 5_1:+54694585 | Msa0737440:CDS |
| TTTCAACACTGTTGTTGCAA+CGG | 0.563769 | 5_1:+54695092 | Msa0737440:CDS |
| GGCATTTAGGAATGAGCTTG+AGG | 0.565772 | 5_1:+54695038 | Msa0737440:CDS |
| TCTGGTTTGGCGTACACTAG+TGG | 0.566254 | 5_1:-54698018 | None:intergenic |
| CTTCCGCGAAACAAGTAGAC+GGG | 0.568795 | 5_1:+54697584 | Msa0737440:CDS |
| TATTCCTAATGAAGATGAGA+AGG | 0.569257 | 5_1:+54695654 | Msa0737440:CDS |
| AACAGATTGATTGAAACTGT+TGG | 0.569401 | 5_1:+54695631 | Msa0737440:CDS |
| CCAAGAAGAACCTGAGACTG+AGG | 0.569865 | 5_1:-54694346 | None:intergenic |
| TTGTCAGAGTCTGCGGCCAA+AGG | 0.571073 | 5_1:-54698095 | None:intergenic |
| ATGAGCTTGAGGAAGCTGGA+TGG | 0.572364 | 5_1:+54695049 | Msa0737440:CDS |
| GTAGTAACAAAATTTCCAGT+AGG | 0.575118 | 5_1:-54698481 | None:intergenic |
| AAACCCGTCTACTTGTTTCG+CGG | 0.576482 | 5_1:-54697587 | None:intergenic |
| GTGATGAGACACATGCTGTC+AGG | 0.578912 | 5_1:-54695687 | None:intergenic |
| CAGATTGTTGTCAGAGTCTG+CGG | 0.584126 | 5_1:-54698102 | None:intergenic |
| GATATTCAAGAGTTTACTCA+GGG | 0.584950 | 5_1:+54694586 | Msa0737440:CDS |
| TGTACGCCAAACCAGAGGAC+TGG | 0.586064 | 5_1:+54698025 | Msa0737440:CDS |
| TTGAGGAGGTGTTCAAACGC+AGG | 0.587360 | 5_1:+54696170 | Msa0737440:CDS |
| ATGATGACTATCTCCACCGT+GGG | 0.589221 | 5_1:+54697172 | Msa0737440:CDS |
| TGAACAGGTCTTGGCCATTG+AGG | 0.590271 | 5_1:+54696153 | Msa0737440:intron |
| TGCTCCTAACCAGAAACTAA+GGG | 0.592577 | 5_1:+54697497 | Msa0737440:CDS |
| CTACTACATGAATATGGCAG+TGG | 0.597183 | 5_1:+54697777 | Msa0737440:CDS |
| AAGCTGGATGGAAGGTCGGA+CGG | 0.599050 | 5_1:+54695061 | Msa0737440:CDS |
| TCATCTTATATACAAGAGGA+AGG | 0.599803 | 5_1:+54694558 | Msa0737440:CDS |
| TGAACCAATGTTAAACCTGA+AGG | 0.600380 | 5_1:+54696222 | Msa0737440:CDS |
| GAGGAAGCTGGATGGAAGGT+CGG | 0.601140 | 5_1:+54695057 | Msa0737440:CDS |
| AAGGACGCACCACACGTGCG+AGG | 0.603642 | 5_1:-54694249 | None:intergenic |
| GCTTGAGGAAGCTGGATGGA+AGG | 0.604593 | 5_1:+54695053 | Msa0737440:CDS |
| GAAATGGCGGCACGTGTGCG+AGG | 0.604749 | 5_1:-54694274 | None:intergenic |
| ACTGCCTTCAGGTTTAACAT+TGG | 0.604771 | 5_1:-54696226 | None:intergenic |
| GGACGCACCACACGTGCGAG+GGG | 0.610180 | 5_1:-54694247 | None:intergenic |
| AGGACGCACCACACGTGCGA+GGG | 0.610726 | 5_1:-54694248 | None:intergenic |
| AAACCTGAAGGCAGTACTTG+GGG | 0.612474 | 5_1:+54696234 | Msa0737440:CDS |
| ATTTACCTGACCAAAATCAA+GGG | 0.615901 | 5_1:-54694398 | None:intergenic |
| TGAGGAGGTGTTCAAACGCA+GGG | 0.618525 | 5_1:+54696171 | Msa0737440:CDS |
| TTCAATCCACTTTAGCTGTG+AGG | 0.629054 | 5_1:+54697233 | Msa0737440:CDS |
| AGCAGCTGGAATCAATGACT+CGG | 0.632061 | 5_1:+54697728 | Msa0737440:intron |
| TTGCCAACAATATTTGCTCG+TGG | 0.635261 | 5_1:-54698503 | None:intergenic |
| TCTTGCATAAGTGCATCCAA+TGG | 0.635870 | 5_1:-54697549 | None:intergenic |
| ATACTGCTTTCCTGTAAGGA+CGG | 0.636058 | 5_1:-54697851 | None:intergenic |
| ACAGGTCTTGGCCATTGAGG+AGG | 0.637192 | 5_1:+54696156 | Msa0737440:intron |
| ATTCCTAATGAAGATGAGAA+GGG | 0.637233 | 5_1:+54695655 | Msa0737440:CDS |
| AGCTCATTCCTAAATGCCTG+AGG | 0.647100 | 5_1:-54695033 | None:intergenic |
| ACTTCCGCGAAACAAGTAGA+CGG | 0.656727 | 5_1:+54697583 | Msa0737440:CDS |
| GACTGAGGAATTGTGCTGCG+AGG | 0.664759 | 5_1:-54694331 | None:intergenic |
| AGAAGTTGCGAAGGAAATGG+CGG | 0.675289 | 5_1:-54694287 | None:intergenic |
| CTGGACGCAAATGCAGCTTG+TGG | 0.692862 | 5_1:+54698044 | Msa0737440:CDS |
| GATGACTATCTCCACCGTGG+GGG | 0.705173 | 5_1:+54697174 | Msa0737440:CDS |
| ACTAGTGTACGCCAAACCAG+AGG | 0.706693 | 5_1:+54698020 | Msa0737440:CDS |
| TGATGACTATCTCCACCGTG+GGG | 0.711405 | 5_1:+54697173 | Msa0737440:CDS |
| AATGATGACTATCTCCACCG+TGG | 0.716532 | 5_1:+54697171 | Msa0737440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAATAAATTAATAATGAA+GGG | - | chr5_1:54694443-54694462 | None:intergenic | 10.0% |
| !! | ATTGAATAAATTAATAATGA+AGG | - | chr5_1:54694444-54694463 | None:intergenic | 10.0% |
| !!! | TCAATTTTATCAAATTATTA+CGG | + | chr5_1:54694722-54694741 | Msa0737440:intron | 10.0% |
| !!! | TTATTTTATCAAATTATTCA+TGG | + | chr5_1:54694917-54694936 | Msa0737440:intron | 10.0% |
| !!! | TAATGTTAGATTTTTATATT+GGG | - | chr5_1:54696553-54696572 | None:intergenic | 10.0% |
| !! | ACAATAAAATGAAATATAAA+AGG | - | chr5_1:54697062-54697081 | None:intergenic | 10.0% |
| !!! | CAATTTTATCAAATTATTAC+GGG | + | chr5_1:54694723-54694742 | Msa0737440:intron | 15.0% |
| !! | TCATCTTATCAAATTATTAT+CGG | + | chr5_1:54694807-54694826 | Msa0737440:intron | 15.0% |
| !! | AAATTAAAAACAACAACAAT+AGG | - | chr5_1:54695160-54695179 | None:intergenic | 15.0% |
| !! | AAATAAAAATGTTAACAGAA+AGG | + | chr5_1:54696023-54696042 | Msa0737440:intron | 15.0% |
| !!! | GTAATGTTAGATTTTTATAT+TGG | - | chr5_1:54696554-54696573 | None:intergenic | 15.0% |
| !!! | AATTAGTTATGTTTTATGTT+TGG | + | chr5_1:54696752-54696771 | Msa0737440:intron | 15.0% |
| !! | TAAACACGATTTATAATTTA+TGG | + | chr5_1:54697901-54697920 | Msa0737440:intron | 15.0% |
| !! | TTTATCATCTTATATACAAG+AGG | + | chr5_1:54694554-54694573 | Msa0737440:CDS | 20.0% |
| !!! | TAAACTTATTTTGTTGTTGT+TGG | + | chr5_1:54694626-54694645 | Msa0737440:intron | 20.0% |
| !!! | TGAAAGTATTAACTTTTCAA+CGG | + | chr5_1:54694978-54694997 | Msa0737440:intron | 20.0% |
| !!! | TTGTTGTTGTTTTTAATTTC+TGG | + | chr5_1:54695161-54695180 | Msa0737440:intron | 20.0% |
| !!! | GTAGCTTTTAGTTTTTTTAA+AGG | + | chr5_1:54695332-54695351 | Msa0737440:intron | 20.0% |
| !!! | ATTCTTGTTTTTCTATTTGT+TGG | + | chr5_1:54695572-54695591 | Msa0737440:intron | 20.0% |
| !!! | TTACAAGCAAATATTTGTTA+AGG | - | chr5_1:54696313-54696332 | None:intergenic | 20.0% |
| !! | TAACATTATCATTTAAACTC+TGG | + | chr5_1:54696403-54696422 | Msa0737440:intron | 20.0% |
| !! | AACATTATCATTTAAACTCT+GGG | + | chr5_1:54696404-54696423 | Msa0737440:intron | 20.0% |
| !!! | TGTAATATTATCTTTTCATG+CGG | + | chr5_1:54696638-54696657 | Msa0737440:intron | 20.0% |
| !!! | TTTAATTTCTATAGAACTTC+TGG | - | chr5_1:54696709-54696728 | None:intergenic | 20.0% |
| !! | AGTTCTATAGAAATTAAAAC+AGG | + | chr5_1:54696711-54696730 | Msa0737440:intron | 20.0% |
| !!! | TAATTTGCTCTTTTATGTTA+TGG | - | chr5_1:54696737-54696756 | None:intergenic | 20.0% |
| !! | TTAATCCAAACTTTGTAATT+TGG | + | chr5_1:54697952-54697971 | Msa0737440:intron | 20.0% |
| !! | TTATCAACATTCTACTTATA+TGG | + | chr5_1:54698202-54698221 | Msa0737440:intron | 20.0% |
| !!! | AACTGAGATTATAATCATTT+TGG | - | chr5_1:54698274-54698293 | None:intergenic | 20.0% |
| !! | TGATTGAATTTTTCTTAGCA+AGG | + | chr5_1:54694514-54694533 | Msa0737440:intron | 25.0% |
| !! | ATTTTTCTTAGCAAGGTTTT+AGG | + | chr5_1:54694521-54694540 | Msa0737440:intron | 25.0% |
| !! | TTTTTCTTAGCAAGGTTTTA+GGG | + | chr5_1:54694522-54694541 | Msa0737440:intron | 25.0% |
| !!! | GAAAGTATTAACTTTTCAAC+GGG | + | chr5_1:54694979-54694998 | Msa0737440:intron | 25.0% |
| !!! | AAAGTATTAACTTTTCAACG+GGG | + | chr5_1:54694980-54694999 | Msa0737440:intron | 25.0% |
| !! | TTTTTAAACTTATGTGACAC+TGG | + | chr5_1:54695275-54695294 | Msa0737440:intron | 25.0% |
| ! | AAAAATGAGATCAATGTCAA+TGG | - | chr5_1:54695430-54695449 | None:intergenic | 25.0% |
| !!! | TGATTCAAGTTGTTTTCTTT+TGG | + | chr5_1:54695457-54695476 | Msa0737440:intron | 25.0% |
| !!! | TTTTCTTTTGGTGTTTTACT+TGG | + | chr5_1:54695469-54695488 | Msa0737440:intron | 25.0% |
| ! | ACTTGGTATTCTTAAGAATA+AGG | + | chr5_1:54695486-54695505 | Msa0737440:intron | 25.0% |
| ! | CTTGGTATTCTTAAGAATAA+GGG | + | chr5_1:54695487-54695506 | Msa0737440:intron | 25.0% |
| !!! | GATATTAACTTGCTTGTTAA+AGG | + | chr5_1:54695513-54695532 | Msa0737440:intron | 25.0% |
| ! | ATCAGTGCATAAAAAAATCA+AGG | - | chr5_1:54695554-54695573 | None:intergenic | 25.0% |
| ! | ATGGACATAACAAAAACAAA+TGG | - | chr5_1:54695802-54695821 | None:intergenic | 25.0% |
| ! | CTAAATATCCAAATAACAGA+TGG | - | chr5_1:54695821-54695840 | None:intergenic | 25.0% |
| !! | CATCTGTTATTTGGATATTT+AGG | + | chr5_1:54695819-54695838 | Msa0737440:intron | 25.0% |
| !! | TGTTATTTGGATATTTAGGT+AGG | + | chr5_1:54695823-54695842 | Msa0737440:intron | 25.0% |
| ! | AAACTACTCTAATGTATCTA+TGG | - | chr5_1:54695939-54695958 | None:intergenic | 25.0% |
| ! | AATTTATTTATGGATCACGT+GGG | - | chr5_1:54695974-54695993 | None:intergenic | 25.0% |
| ! | ATCCATAAATAAATTGCCTA+AGG | + | chr5_1:54695979-54695998 | Msa0737440:intron | 25.0% |
| ! | AAAATGTTAACAGAAAGGAA+AGG | + | chr5_1:54696028-54696047 | Msa0737440:intron | 25.0% |
| !! | TAAAGCAATGAGATCATTTT+CGG | + | chr5_1:54696063-54696082 | Msa0737440:intron | 25.0% |
| !! | ACATTGAATTTTATGTGAAC+AGG | + | chr5_1:54696138-54696157 | Msa0737440:intron | 25.0% |
| !!! | ACTCATTGGTTTTTACTTAT+TGG | + | chr5_1:54696427-54696446 | Msa0737440:intron | 25.0% |
| !!! | CTCATTGGTTTTTACTTATT+GGG | + | chr5_1:54696428-54696447 | Msa0737440:intron | 25.0% |
| !!! | ATAGTTTTATGCATGTGAAA+CGG | - | chr5_1:54696817-54696836 | None:intergenic | 25.0% |
| ! | AAACTATTCATGCATACATA+TGG | + | chr5_1:54696830-54696849 | Msa0737440:intron | 25.0% |
| !! | CGATAAATGATTTCTTTTGA+CGG | - | chr5_1:54696860-54696879 | None:intergenic | 25.0% |
| ! | CGTCAAAAGAAATCATTTAT+CGG | + | chr5_1:54696858-54696877 | Msa0737440:intron | 25.0% |
| ! | TTCTTGTAGGATATACAAAT+TGG | + | chr5_1:54697142-54697161 | Msa0737440:intron | 25.0% |
| ! | TCTTGTAGGATATACAAATT+GGG | + | chr5_1:54697143-54697162 | Msa0737440:intron | 25.0% |
| ! | GCTAACTTCTTTATTGTATT+TGG | - | chr5_1:54697202-54697221 | None:intergenic | 25.0% |
| !! | CCATCAAATGATATATTTTG+CGG | - | chr5_1:54697388-54697407 | None:intergenic | 25.0% |
| !! | ATACCTTTTAATCCAATAGA+AGG | + | chr5_1:54697816-54697835 | Msa0737440:CDS | 25.0% |
| !!! | AAGTTTTTGAAGTTCCGTTT+CGG | - | chr5_1:54694377-54694396 | None:intergenic | 30.0% |
| ATTTACCTGACCAAAATCAA+GGG | - | chr5_1:54694401-54694420 | None:intergenic | 30.0% | |
| AATTTACCTGACCAAAATCA+AGG | - | chr5_1:54694402-54694421 | None:intergenic | 30.0% | |
| !! | TTTTCTTAGCAAGGTTTTAG+GGG | + | chr5_1:54694523-54694542 | Msa0737440:intron | 30.0% |
| TCATCTTATATACAAGAGGA+AGG | + | chr5_1:54694558-54694577 | Msa0737440:CDS | 30.0% | |
| AGATATTCAAGAGTTTACTC+AGG | + | chr5_1:54694585-54694604 | Msa0737440:CDS | 30.0% | |
| GATATTCAAGAGTTTACTCA+GGG | + | chr5_1:54694586-54694605 | Msa0737440:CDS | 30.0% | |
| TTTACTCATTCATGTCAGTT+AGG | + | chr5_1:54694841-54694860 | Msa0737440:intron | 30.0% | |
| AGACATCTCAAGATATAAAG+TGG | - | chr5_1:54695380-54695399 | None:intergenic | 30.0% | |
| CAAATTACATTTGCGTTTAG+AGG | - | chr5_1:54695404-54695423 | None:intergenic | 30.0% | |
| !! | TGACATTGATCTCATTTTTC+CGG | + | chr5_1:54695431-54695450 | Msa0737440:intron | 30.0% |
| AAAACAACTTGAATCATTGC+CGG | - | chr5_1:54695453-54695472 | None:intergenic | 30.0% | |
| GTATTCTTAAGAATAAGGGT+AGG | + | chr5_1:54695491-54695510 | Msa0737440:intron | 30.0% | |
| !! | TTAACTTGCTTGTTAAAGGA+TGG | + | chr5_1:54695517-54695536 | Msa0737440:intron | 30.0% |
| !! | TAACTTGCTTGTTAAAGGAT+GGG | + | chr5_1:54695518-54695537 | Msa0737440:intron | 30.0% |
| ! | TTTGCAGTTGTTATTGAAGT+TGG | + | chr5_1:54695603-54695622 | Msa0737440:intron | 30.0% |
| AACAGATTGATTGAAACTGT+TGG | + | chr5_1:54695631-54695650 | Msa0737440:CDS | 30.0% | |
| TATTCCTAATGAAGATGAGA+AGG | + | chr5_1:54695654-54695673 | Msa0737440:CDS | 30.0% | |
| ATTCCTAATGAAGATGAGAA+GGG | + | chr5_1:54695655-54695674 | Msa0737440:CDS | 30.0% | |
| TGTTATGTCCATCTGTTATT+TGG | + | chr5_1:54695810-54695829 | Msa0737440:intron | 30.0% | |
| CAATTTATTTATGGATCACG+TGG | - | chr5_1:54695975-54695994 | None:intergenic | 30.0% | |
| TGCCTTAGGCAATTTATTTA+TGG | - | chr5_1:54695984-54696003 | None:intergenic | 30.0% | |
| AGTTGAATCTAAATTGCCTT+AGG | - | chr5_1:54695998-54696017 | None:intergenic | 30.0% | |
| ! | AAAGCAATGAGATCATTTTC+GGG | + | chr5_1:54696064-54696083 | Msa0737440:intron | 30.0% |
| ! | AATTTTATGTGAACAGGTCT+TGG | + | chr5_1:54696144-54696163 | Msa0737440:intron | 30.0% |
| GTGACTAATGTAGTCTTTAT+GGG | + | chr5_1:54696193-54696212 | Msa0737440:CDS | 30.0% | |
| TAATGTAGTCTTTATGGGAA+TGG | + | chr5_1:54696198-54696217 | Msa0737440:CDS | 30.0% | |
| AATGTAGTCTTTATGGGAAT+GGG | + | chr5_1:54696199-54696218 | Msa0737440:CDS | 30.0% | |
| ! | TTTAGAGTTTAAACCTGCAA+CGG | + | chr5_1:54696358-54696377 | Msa0737440:intron | 30.0% |
| ACCTCTCTTTATAAACTCAT+TGG | - | chr5_1:54696489-54696508 | None:intergenic | 30.0% | |
| ATTCCATCTTAGTAAGTGTT+AGG | + | chr5_1:54696587-54696606 | Msa0737440:intron | 30.0% | |
| ! | AATATTATCTTTTCATGCGG+AGG | + | chr5_1:54696641-54696660 | Msa0737440:intron | 30.0% |
| ! | GATCAGAATAAAGTTTTGCT+TGG | + | chr5_1:54697026-54697045 | Msa0737440:intron | 30.0% |
| CCGCAAAATATATCATTTGA+TGG | + | chr5_1:54697385-54697404 | Msa0737440:intron | 30.0% | |
| !!! | TCATTTGATGGCTTTTTTAG+TGG | + | chr5_1:54697397-54697416 | Msa0737440:intron | 30.0% |
| ! | TCCTTTGAATATGCACTTTT+AGG | + | chr5_1:54697609-54697628 | Msa0737440:CDS | 30.0% |
| ! | ACCTAAAAGTGCATATTCAA+AGG | - | chr5_1:54697613-54697632 | None:intergenic | 30.0% |
| !! | TGAATATGCACTTTTAGGTA+CGG | + | chr5_1:54697614-54697633 | Msa0737440:intron | 30.0% |
| GCTAAACTACTACATGAATA+TGG | + | chr5_1:54697771-54697790 | Msa0737440:CDS | 30.0% | |
| TCCAAACTTTGTAATTTGGT+AGG | + | chr5_1:54697956-54697975 | Msa0737440:intron | 30.0% | |
| ACCTACCAAATTACAAAGTT+TGG | - | chr5_1:54697960-54697979 | None:intergenic | 30.0% | |
| CAATTTCCAAAAAACACCTT+TGG | + | chr5_1:54698079-54698098 | Msa0737440:CDS | 30.0% | |
| TGGCATATACTAAACAAGTT+TGG | + | chr5_1:54698222-54698241 | Msa0737440:intron | 30.0% | |
| TACCAATAATGAAGTGATAG+AGG | + | chr5_1:54698293-54698312 | Msa0737440:intron | 30.0% | |
| TAGAAAGCCTTTAGATTCTT+TGG | + | chr5_1:54698429-54698448 | Msa0737440:CDS | 30.0% | |
| TTTCATAAGAAACAACCTAC+TGG | + | chr5_1:54698466-54698485 | Msa0737440:CDS | 30.0% | |
| GTAGTAACAAAATTTCCAGT+AGG | - | chr5_1:54698484-54698503 | None:intergenic | 30.0% | |
| ATTGTTGGCAATTAGTGATT+AGG | + | chr5_1:54698515-54698534 | Msa0737440:CDS | 30.0% | |
| ! | CAAAAACTTGCCCTTGATTT+TGG | + | chr5_1:54694388-54694407 | Msa0737440:CDS | 35.0% |
| !!! | TTTCTTAGCAAGGTTTTAGG+GGG | + | chr5_1:54694524-54694543 | Msa0737440:intron | 35.0% |
| !! | AGTTTCAGTTTAGCATTGAC+AGG | + | chr5_1:54694765-54694784 | Msa0737440:intron | 35.0% |
| TTTCAACACTGTTGTTGCAA+CGG | + | chr5_1:54695092-54695111 | Msa0737440:CDS | 35.0% | |
| !! | TTCCTGCTAACCATTTTTCA+TGG | + | chr5_1:54695184-54695203 | Msa0737440:intron | 35.0% |
| !! | TCCTGCTAACCATTTTTCAT+GGG | + | chr5_1:54695185-54695204 | Msa0737440:intron | 35.0% |
| TTGTGATACCCCATGAAAAA+TGG | - | chr5_1:54695197-54695216 | None:intergenic | 35.0% | |
| !! | CACAAAAAGAGCATTTCAGA+GGG | - | chr5_1:54695852-54695871 | None:intergenic | 35.0% |
| AAACCTGCTCAACAATTTCA+TGG | - | chr5_1:54695912-54695931 | None:intergenic | 35.0% | |
| TTCAATGTTATCCTGCTTTG+TGG | - | chr5_1:54696126-54696145 | None:intergenic | 35.0% | |
| GGTGACTAATGTAGTCTTTA+TGG | + | chr5_1:54696192-54696211 | Msa0737440:CDS | 35.0% | |
| TGAACCAATGTTAAACCTGA+AGG | + | chr5_1:54696222-54696241 | Msa0737440:CDS | 35.0% | |
| CATTCACCTTATTCAAGCAA+TGG | - | chr5_1:54696264-54696283 | None:intergenic | 35.0% | |
| !! | ATTTAAACTCTGGGACTCAT+TGG | + | chr5_1:54696413-54696432 | Msa0737440:intron | 35.0% |
| GCCAATGAGTTTATAAAGAG+AGG | + | chr5_1:54696485-54696504 | Msa0737440:intron | 35.0% | |
| !! | AAAACCGATTTGTAAGGTGA+GGG | - | chr5_1:54696514-54696533 | None:intergenic | 35.0% |
| GAACCTAACACTTACTAAGA+TGG | - | chr5_1:54696593-54696612 | None:intergenic | 35.0% | |
| ! | AGGGACATGGATTTCTTTTA+TGG | + | chr5_1:54696664-54696683 | Msa0737440:intron | 35.0% |
| TTGCACTAAATAGCGTATCA+CGG | - | chr5_1:54696909-54696928 | None:intergenic | 35.0% | |
| GTATGTAAGTGTGCTAATGT+TGG | + | chr5_1:54697106-54697125 | Msa0737440:intron | 35.0% | |
| ACTGACAAGATCAGAATCAA+GGG | - | chr5_1:54697265-54697284 | None:intergenic | 35.0% | |
| GATCTTGTCAGTCAAGAATT+AGG | + | chr5_1:54697273-54697292 | Msa0737440:intron | 35.0% | |
| ! | AATGGGTAAGATTTTGCACT+TGG | - | chr5_1:54697534-54697553 | None:intergenic | 35.0% |
| AAGTGCAAAATCTTACCCAT+TGG | + | chr5_1:54697533-54697552 | Msa0737440:CDS | 35.0% | |
| TCATTAACCTTACTGTACGA+GGG | - | chr5_1:54697666-54697685 | None:intergenic | 35.0% | |
| TTCATTAACCTTACTGTACG+AGG | - | chr5_1:54697667-54697686 | None:intergenic | 35.0% | |
| CAAACATAATGACAGGAAAG+TGG | - | chr5_1:54697708-54697727 | None:intergenic | 35.0% | |
| GAGCCTTCTATTGGATTAAA+AGG | - | chr5_1:54697822-54697841 | None:intergenic | 35.0% | |
| TATCATACTGCTTTCCTGTA+AGG | - | chr5_1:54697858-54697877 | None:intergenic | 35.0% | |
| ! | GCAAGCATTTGTTAATGCTT+TGG | + | chr5_1:54697980-54697999 | Msa0737440:CDS | 35.0% |
| GTTTGGACTAAAACAATGAG+AGG | + | chr5_1:54698239-54698258 | Msa0737440:intron | 35.0% | |
| CACCTCTATCACTTCATTAT+TGG | - | chr5_1:54698298-54698317 | None:intergenic | 35.0% | |
| GAAAGTTGACATTGTAACTC+AGG | - | chr5_1:54698334-54698353 | None:intergenic | 35.0% | |
| !!! | AGAAGCATCTATGTGGTTTT+TGG | + | chr5_1:54698374-54698393 | Msa0737440:intron | 35.0% |
| !!! | GGTTTTTGGCACTAATTTTG+TGG | + | chr5_1:54698388-54698407 | Msa0737440:intron | 35.0% |
| TTAGCTGCCAAAGAATCTAA+AGG | - | chr5_1:54698439-54698458 | None:intergenic | 35.0% | |
| AGAAGAAGTTGCGAAGGAAA+TGG | - | chr5_1:54694293-54694312 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAAGTTGCGA+AGG | - | chr5_1:54694299-54694318 | None:intergenic | 40.0% | |
| TCTTCTTGGCTTATCCGAAA+CGG | + | chr5_1:54694360-54694379 | Msa0737440:CDS | 40.0% | |
| ATGTGTAATGACACTGACAC+AGG | + | chr5_1:54694669-54694688 | Msa0737440:intron | 40.0% | |
| GACACAGGATATTACACACA+TGG | + | chr5_1:54694684-54694703 | Msa0737440:intron | 40.0% | |
| ! | TTCATGGTTGTTGTTCGTGT+TGG | + | chr5_1:54694933-54694952 | Msa0737440:intron | 40.0% |
| ! | GCAACAACAGTGTTGAAAAC+TGG | - | chr5_1:54695090-54695109 | None:intergenic | 40.0% |
| !! | CCTGCTAACCATTTTTCATG+GGG | + | chr5_1:54695186-54695205 | Msa0737440:intron | 40.0% |
| GAACCCTTCTCATCTTCATT+AGG | - | chr5_1:54695661-54695680 | None:intergenic | 40.0% | |
| !! | GCACAAAAAGAGCATTTCAG+AGG | - | chr5_1:54695853-54695872 | None:intergenic | 40.0% |
| ! | AAATGCTCTTTTTGTGCCAC+TGG | + | chr5_1:54695856-54695875 | Msa0737440:CDS | 40.0% |
| !! | TCTTTTTGTGCCACTGGAAA+AGG | + | chr5_1:54695862-54695881 | Msa0737440:CDS | 40.0% |
| !! | CTTTTTGTGCCACTGGAAAA+GGG | + | chr5_1:54695863-54695882 | Msa0737440:CDS | 40.0% |
| !! | TTTTTGTGCCACTGGAAAAG+GGG | + | chr5_1:54695864-54695883 | Msa0737440:CDS | 40.0% |
| TTTCTGTTTCACCACAAAGC+AGG | + | chr5_1:54696112-54696131 | Msa0737440:intron | 40.0% | |
| ! | ACTGCCTTCAGGTTTAACAT+TGG | - | chr5_1:54696229-54696248 | None:intergenic | 40.0% |
| TTAAACCTGAAGGCAGTACT+TGG | + | chr5_1:54696232-54696251 | Msa0737440:CDS | 40.0% | |
| TAAACCTGAAGGCAGTACTT+GGG | + | chr5_1:54696233-54696252 | Msa0737440:CDS | 40.0% | |
| ! | AACCTAGTTAAGAGCACAGA+TGG | - | chr5_1:54696384-54696403 | None:intergenic | 40.0% |
| TTCTATTCTACGCGGGATTT+GGG | - | chr5_1:54696460-54696479 | None:intergenic | 40.0% | |
| TTTCTATTCTACGCGGGATT+TGG | - | chr5_1:54696461-54696480 | None:intergenic | 40.0% | |
| !! | GCTCTATTTCTATTCTACGC+GGG | - | chr5_1:54696467-54696486 | None:intergenic | 40.0% |
| !! | GGCTCTATTTCTATTCTACG+CGG | - | chr5_1:54696468-54696487 | None:intergenic | 40.0% |
| !! | AAACCGATTTGTAAGGTGAG+GGG | - | chr5_1:54696513-54696532 | None:intergenic | 40.0% |
| !! | CAAAACCGATTTGTAAGGTG+AGG | - | chr5_1:54696515-54696534 | None:intergenic | 40.0% |
| !! | CCTTGCAAAACCGATTTGTA+AGG | - | chr5_1:54696520-54696539 | None:intergenic | 40.0% |
| !! | CCTTACAAATCGGTTTTGCA+AGG | + | chr5_1:54696517-54696536 | Msa0737440:intron | 40.0% |
| AGGTTCTCTTGCTACTGAAT+TGG | + | chr5_1:54696607-54696626 | Msa0737440:intron | 40.0% | |
| ! | ATTATCTTTTCATGCGGAGG+AGG | + | chr5_1:54696644-54696663 | Msa0737440:intron | 40.0% |
| ! | TTATCTTTTCATGCGGAGGA+GGG | + | chr5_1:54696645-54696664 | Msa0737440:intron | 40.0% |
| AGTGTGCTAATGTTGGATTC+TGG | + | chr5_1:54697113-54697132 | Msa0737440:intron | 40.0% | |
| TGCTAATGTTGGATTCTGGT+TGG | + | chr5_1:54697117-54697136 | Msa0737440:intron | 40.0% | |
| ! | GCTAATGTTGGATTCTGGTT+GGG | + | chr5_1:54697118-54697137 | Msa0737440:intron | 40.0% |
| ! | TATTGTATTTGGAACCCCCA+CGG | - | chr5_1:54697191-54697210 | None:intergenic | 40.0% |
| TTCAATCCACTTTAGCTGTG+AGG | + | chr5_1:54697233-54697252 | Msa0737440:CDS | 40.0% | |
| CAATTACCTCACAGCTAAAG+TGG | - | chr5_1:54697242-54697261 | None:intergenic | 40.0% | |
| GACTGACAAGATCAGAATCA+AGG | - | chr5_1:54697266-54697285 | None:intergenic | 40.0% | |
| TTCGTTCGTTGTTCATACTC+TGG | + | chr5_1:54697338-54697357 | Msa0737440:intron | 40.0% | |
| GGCTGATGGAAGATACAAAA+GGG | - | chr5_1:54697473-54697492 | None:intergenic | 40.0% | |
| AGGCTGATGGAAGATACAAA+AGG | - | chr5_1:54697474-54697493 | None:intergenic | 40.0% | |
| ATGCTCCTAACCAGAAACTA+AGG | + | chr5_1:54697496-54697515 | Msa0737440:CDS | 40.0% | |
| TGCTCCTAACCAGAAACTAA+GGG | + | chr5_1:54697497-54697516 | Msa0737440:CDS | 40.0% | |
| CAATTGTCTCCCTTAGTTTC+TGG | - | chr5_1:54697509-54697528 | None:intergenic | 40.0% | |
| CTTGCATAAGTGCATCCAAT+GGG | - | chr5_1:54697551-54697570 | None:intergenic | 40.0% | |
| TCTTGCATAAGTGCATCCAA+TGG | - | chr5_1:54697552-54697571 | None:intergenic | 40.0% | |
| AGCTGCTCAAACATAATGAC+AGG | - | chr5_1:54697715-54697734 | None:intergenic | 40.0% | |
| TGTCATTATGTTTGAGCAGC+TGG | + | chr5_1:54697714-54697733 | Msa0737440:intron | 40.0% | |
| CTACTACATGAATATGGCAG+TGG | + | chr5_1:54697777-54697796 | Msa0737440:CDS | 40.0% | |
| ATACTGCTTTCCTGTAAGGA+CGG | - | chr5_1:54697854-54697873 | None:intergenic | 40.0% | |
| AAGGTCCATATTTGGAAGCT+GGG | - | chr5_1:54698132-54698151 | None:intergenic | 40.0% | |
| GTAACTGCAAGGTCCATATT+TGG | - | chr5_1:54698140-54698159 | None:intergenic | 40.0% | |
| AATATGGACCTTGCAGTTAC+AGG | + | chr5_1:54698140-54698159 | Msa0737440:intron | 40.0% | |
| CACACACAATGTCAGTTTCA+TGG | + | chr5_1:54698170-54698189 | Msa0737440:intron | 40.0% | |
| ATTGTAACTCAGGCAGTAAC+AGG | - | chr5_1:54698324-54698343 | None:intergenic | 40.0% | |
| TTCTTGCTAGCAGAGAAATG+TGG | + | chr5_1:54698351-54698370 | Msa0737440:intron | 40.0% | |
| !! | AATGTGGAGAAGCATCTATG+TGG | + | chr5_1:54698367-54698386 | Msa0737440:intron | 40.0% |
| ! | GCACTAATTTTGTGGTATGC+AGG | + | chr5_1:54698396-54698415 | Msa0737440:intron | 40.0% |
| ! | AATTTTGTGGTATGCAGGCT+TGG | + | chr5_1:54698401-54698420 | Msa0737440:intron | 40.0% |
| TAGATTCTTTGGCAGCTAAG+AGG | + | chr5_1:54698440-54698459 | Msa0737440:CDS | 40.0% | |
| CTACCACGAGCAAATATTGT+TGG | + | chr5_1:54698500-54698519 | Msa0737440:CDS | 40.0% | |
| TTGCCAACAATATTTGCTCG+TGG | - | chr5_1:54698506-54698525 | None:intergenic | 40.0% | |
| AGAAGTTGCGAAGGAAATGG+CGG | - | chr5_1:54694290-54694309 | None:intergenic | 45.0% | |
| !! | ACTTGCCCTTGATTTTGGTC+AGG | + | chr5_1:54694393-54694412 | Msa0737440:CDS | 45.0% |
| GTGATTGAATGTAACCACGC+AGG | - | chr5_1:54694895-54694914 | None:intergenic | 45.0% | |
| !! | GTTCGTGTTGGTGTTGTGTT+TGG | + | chr5_1:54694945-54694964 | Msa0737440:intron | 45.0% |
| AGCTCATTCCTAAATGCCTG+AGG | - | chr5_1:54695036-54695055 | None:intergenic | 45.0% | |
| GGCATTTAGGAATGAGCTTG+AGG | + | chr5_1:54695038-54695057 | Msa0737440:CDS | 45.0% | |
| AACACTGTTGTTGCAACGGA+TGG | + | chr5_1:54695096-54695115 | Msa0737440:CDS | 45.0% | |
| TGCAACGGATGGAACTGTTA+AGG | + | chr5_1:54695107-54695126 | Msa0737440:CDS | 45.0% | |
| CCCCATGAAAAATGGTTAGC+AGG | - | chr5_1:54695189-54695208 | None:intergenic | 45.0% | |
| !! | TTTTGTGCCACTGGAAAAGG+GGG | + | chr5_1:54695865-54695884 | Msa0737440:CDS | 45.0% |
| !! | GGGGCTTTTCAAGGAATCTT+CGG | + | chr5_1:54695884-54695903 | Msa0737440:CDS | 45.0% |
| GAGCCATGAAATTGTTGAGC+AGG | + | chr5_1:54695906-54695925 | Msa0737440:CDS | 45.0% | |
| AAACCTGAAGGCAGTACTTG+GGG | + | chr5_1:54696234-54696253 | Msa0737440:CDS | 45.0% | |
| GGCACACCATTGCTTGAATA+AGG | + | chr5_1:54696255-54696274 | Msa0737440:CDS | 45.0% | |
| GTACCCCTCACCTTACAAAT+CGG | + | chr5_1:54696507-54696526 | Msa0737440:intron | 45.0% | |
| ! | CGGTTTTGCAAGGATGAGTT+AGG | + | chr5_1:54696527-54696546 | Msa0737440:intron | 45.0% |
| ! | ATTCTGGTTGGGCTTCTTGT+AGG | + | chr5_1:54697129-54697148 | Msa0737440:intron | 45.0% |
| AATGATGACTATCTCCACCG+TGG | + | chr5_1:54697171-54697190 | Msa0737440:CDS | 45.0% | |
| ATGATGACTATCTCCACCGT+GGG | + | chr5_1:54697172-54697191 | Msa0737440:CDS | 45.0% | |
| TCATACTCTGGTGTCTGATC+TGG | + | chr5_1:54697350-54697369 | Msa0737440:intron | 45.0% | |
| ! | GTCTGATCTGGTCTGATTTG+TGG | + | chr5_1:54697362-54697381 | Msa0737440:intron | 45.0% |
| !! | GTTTCTGGTTAGGAGCATGT+AGG | - | chr5_1:54697494-54697513 | None:intergenic | 45.0% |
| !! | GTCTCCCTTAGTTTCTGGTT+AGG | - | chr5_1:54697504-54697523 | None:intergenic | 45.0% |
| TGCACTTATGCAAGACTGCA+AGG | + | chr5_1:54697557-54697576 | Msa0737440:CDS | 45.0% | |
| ACTTCCGCGAAACAAGTAGA+CGG | + | chr5_1:54697583-54697602 | Msa0737440:CDS | 45.0% | |
| AAACCCGTCTACTTGTTTCG+CGG | - | chr5_1:54697590-54697609 | None:intergenic | 45.0% | |
| AGGGAGGAACAAGAATGTGT+TGG | - | chr5_1:54697647-54697666 | None:intergenic | 45.0% | |
| TTAACCTTACTGTACGAGGG+AGG | - | chr5_1:54697663-54697682 | None:intergenic | 45.0% | |
| AGCAGCTGGAATCAATGACT+CGG | + | chr5_1:54697728-54697747 | Msa0737440:intron | 45.0% | |
| CGAAACTCAGAGCCTTCTAT+TGG | - | chr5_1:54697831-54697850 | None:intergenic | 45.0% | |
| CAGATTGTTGTCAGAGTCTG+CGG | - | chr5_1:54698105-54698124 | None:intergenic | 45.0% | |
| GGAATCCCAGCTTCCAAATA+TGG | + | chr5_1:54698124-54698143 | Msa0737440:CDS | 45.0% | |
| CAAGGTCCATATTTGGAAGC+TGG | - | chr5_1:54698133-54698152 | None:intergenic | 45.0% | |
| GCAATCAACCTGTAACTGCA+AGG | - | chr5_1:54698151-54698170 | None:intergenic | 45.0% | |
| CAGCACAATTCCTCAGTCTC+AGG | + | chr5_1:54694336-54694355 | Msa0737440:CDS | 50.0% | |
| CCAAGAAGAACCTGAGACTG+AGG | - | chr5_1:54694349-54694368 | None:intergenic | 50.0% | |
| CCTCAGTCTCAGGTTCTTCT+TGG | + | chr5_1:54694346-54694365 | Msa0737440:CDS | 50.0% | |
| TTGCAGTGCCTCAGGCATTT+AGG | + | chr5_1:54695025-54695044 | Msa0737440:intron | 50.0% | |
| AGGAATGAGCTTGAGGAAGC+TGG | + | chr5_1:54695045-54695064 | Msa0737440:CDS | 50.0% | |
| ATGAGCTTGAGGAAGCTGGA+TGG | + | chr5_1:54695049-54695068 | Msa0737440:CDS | 50.0% | |
| GTGATGAGACACATGCTGTC+AGG | - | chr5_1:54695690-54695709 | None:intergenic | 50.0% | |
| GACAGCATGTGTCTCATCAC+AGG | + | chr5_1:54695690-54695709 | Msa0737440:CDS | 50.0% | |
| ! | TGAAAAGCCCCCTTTTCCAG+TGG | - | chr5_1:54695875-54695894 | None:intergenic | 50.0% |
| ! | CTGGAAAAGGGGGCTTTTCA+AGG | + | chr5_1:54695875-54695894 | Msa0737440:CDS | 50.0% |
| TGAACAGGTCTTGGCCATTG+AGG | + | chr5_1:54696153-54696172 | Msa0737440:intron | 50.0% | |
| GCGTTTGAACACCTCCTCAA+TGG | - | chr5_1:54696170-54696189 | None:intergenic | 50.0% | |
| !! | TTGAGGAGGTGTTCAAACGC+AGG | + | chr5_1:54696170-54696189 | Msa0737440:CDS | 50.0% |
| !! | TGAGGAGGTGTTCAAACGCA+GGG | + | chr5_1:54696171-54696190 | Msa0737440:CDS | 50.0% |
| GGCCATCTGTGCTCTTAACT+AGG | + | chr5_1:54696379-54696398 | Msa0737440:intron | 50.0% | |
| AGCGTATCACGGAGCAATAG+CGG | - | chr5_1:54696898-54696917 | None:intergenic | 50.0% | |
| TGATGACTATCTCCACCGTG+GGG | + | chr5_1:54697173-54697192 | Msa0737440:CDS | 50.0% | |
| ! | GTTAGGAGCATGTAGGCTGA+TGG | - | chr5_1:54697487-54697506 | None:intergenic | 50.0% |
| CTTCCGCGAAACAAGTAGAC+GGG | + | chr5_1:54697584-54697603 | Msa0737440:CDS | 50.0% | |
| TGTTCCTCCCTCGTACAGTA+AGG | + | chr5_1:54697656-54697675 | Msa0737440:intron | 50.0% | |
| !! | TCTGGTTTGGCGTACACTAG+TGG | - | chr5_1:54698021-54698040 | None:intergenic | 50.0% |
| ACTAGTGTACGCCAAACCAG+AGG | + | chr5_1:54698020-54698039 | Msa0737440:CDS | 50.0% | |
| ATGCAGCTTGTGGTCAGCTA+CGG | + | chr5_1:54698054-54698073 | Msa0737440:CDS | 50.0% | |
| !!! | CTGCGGCCAAAGGTGTTTTT+TGG | - | chr5_1:54698088-54698107 | None:intergenic | 50.0% |
| CGCAGACTCTGACAACAATC+TGG | + | chr5_1:54698103-54698122 | Msa0737440:CDS | 50.0% | |
| GACTGAGGAATTGTGCTGCG+AGG | - | chr5_1:54694334-54694353 | None:intergenic | 55.0% | |
| TGACACGACATTGACCTGCG+TGG | + | chr5_1:54694878-54694897 | Msa0737440:intron | 55.0% | |
| TGCTTGCATTGCAGTGCCTC+AGG | + | chr5_1:54695017-54695036 | Msa0737440:intron | 55.0% | |
| GCTTGAGGAAGCTGGATGGA+AGG | + | chr5_1:54695053-54695072 | Msa0737440:CDS | 55.0% | |
| GAGGAAGCTGGATGGAAGGT+CGG | + | chr5_1:54695057-54695076 | Msa0737440:CDS | 55.0% | |
| AAGCTGGATGGAAGGTCGGA+CGG | + | chr5_1:54695061-54695080 | Msa0737440:CDS | 55.0% | |
| ACAGGTCTTGGCCATTGAGG+AGG | + | chr5_1:54696156-54696175 | Msa0737440:intron | 55.0% | |
| TTTCATGCGGAGGAGGGACA+TGG | + | chr5_1:54696651-54696670 | Msa0737440:intron | 55.0% | |
| GATGACTATCTCCACCGTGG+GGG | + | chr5_1:54697174-54697193 | Msa0737440:CDS | 55.0% | |
| ! | TGTATTTGGAACCCCCACGG+TGG | - | chr5_1:54697188-54697207 | None:intergenic | 55.0% |
| CTGAGTTTCGCCGTCCTTAC+AGG | + | chr5_1:54697841-54697860 | Msa0737440:CDS | 55.0% | |
| TGTACGCCAAACCAGAGGAC+TGG | + | chr5_1:54698025-54698044 | Msa0737440:CDS | 55.0% | |
| TTGCGTCCAGTCCTCTGGTT+TGG | - | chr5_1:54698034-54698053 | None:intergenic | 55.0% | |
| TGCATTTGCGTCCAGTCCTC+TGG | - | chr5_1:54698039-54698058 | None:intergenic | 55.0% | |
| CTGGACGCAAATGCAGCTTG+TGG | + | chr5_1:54698044-54698063 | Msa0737440:CDS | 55.0% | |
| TTGTCAGAGTCTGCGGCCAA+AGG | - | chr5_1:54698098-54698117 | None:intergenic | 55.0% | |
| ! | GTGCGAGGGGCATGGAATAG+TGG | - | chr5_1:54694237-54694256 | None:intergenic | 60.0% |
| ! | GTGCCCCAAGTACTGCCTTC+AGG | - | chr5_1:54696240-54696259 | None:intergenic | 60.0% |
| AGAGCACAGATGGCCGTTGC+AGG | - | chr5_1:54696374-54696393 | None:intergenic | 60.0% | |
| TTCCATGCCCCTCGCACGTG+TGG | + | chr5_1:54694240-54694259 | Msa0737440:CDS | 65.0% | |
| AGGACGCACCACACGTGCGA+GGG | - | chr5_1:54694251-54694270 | None:intergenic | 65.0% | |
| AAGGACGCACCACACGTGCG+AGG | - | chr5_1:54694252-54694271 | None:intergenic | 65.0% | |
| GAAATGGCGGCACGTGTGCG+AGG | - | chr5_1:54694277-54694296 | None:intergenic | 65.0% | |
| CACCACACGTGCGAGGGGCA+TGG | - | chr5_1:54694245-54694264 | None:intergenic | 70.0% | |
| GGACGCACCACACGTGCGAG+GGG | - | chr5_1:54694250-54694269 | None:intergenic | 70.0% | |
| GCGGCACGTGTGCGAGGTGA+AGG | - | chr5_1:54694271-54694290 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 54694198 | 54698543 | 54694198 | ID=Msa0737440;Name=Msa0737440 |
| chr5_1 | mRNA | 54694198 | 54698543 | 54694198 | ID=Msa0737440-mRNA-1;Parent=Msa0737440;Name=Msa0737440-mRNA-1;_AED=0.22;_eAED=0.22;_QI=19|0.9|0.81|1|1|1|11|0|453 |
| chr5_1 | exon | 54694198 | 54694414 | 54694198 | ID=Msa0737440-mRNA-1:exon:15383;Parent=Msa0737440-mRNA-1 |
| chr5_1 | exon | 54694532 | 54694607 | 54694532 | ID=Msa0737440-mRNA-1:exon:15384;Parent=Msa0737440-mRNA-1 |
| chr5_1 | exon | 54695031 | 54695128 | 54695031 | ID=Msa0737440-mRNA-1:exon:15385;Parent=Msa0737440-mRNA-1 |
| chr5_1 | exon | 54695610 | 54695711 | 54695610 | ID=Msa0737440-mRNA-1:exon:15386;Parent=Msa0737440-mRNA-1 |
| chr5_1 | exon | 54695841 | 54695927 | 54695841 | ID=Msa0737440-mRNA-1:exon:15387;Parent=Msa0737440-mRNA-1 |
| chr5_1 | exon | 54696160 | 54696276 | 54696160 | ID=Msa0737440-mRNA-1:exon:15388;Parent=Msa0737440-mRNA-1 |
| chr5_1 | exon | 54697151 | 54697254 | 54697151 | ID=Msa0737440-mRNA-1:exon:15389;Parent=Msa0737440-mRNA-1 |
| chr5_1 | exon | 54697491 | 54697630 | 54697491 | ID=Msa0737440-mRNA-1:exon:15390;Parent=Msa0737440-mRNA-1 |
| chr5_1 | exon | 54697733 | 54697869 | 54697733 | ID=Msa0737440-mRNA-1:exon:15391;Parent=Msa0737440-mRNA-1 |
| chr5_1 | exon | 54697978 | 54698154 | 54697978 | ID=Msa0737440-mRNA-1:exon:15392;Parent=Msa0737440-mRNA-1 |
| chr5_1 | exon | 54698418 | 54698543 | 54698418 | ID=Msa0737440-mRNA-1:exon:15393;Parent=Msa0737440-mRNA-1 |
| chr5_1 | five_prime_UTR | 54694198 | 54694216 | 54694198 | ID=Msa0737440-mRNA-1:five_prime_utr;Parent=Msa0737440-mRNA-1 |
| chr5_1 | CDS | 54694217 | 54694414 | 54694217 | ID=Msa0737440-mRNA-1:cds;Parent=Msa0737440-mRNA-1 |
| chr5_1 | CDS | 54694532 | 54694607 | 54694532 | ID=Msa0737440-mRNA-1:cds;Parent=Msa0737440-mRNA-1 |
| chr5_1 | CDS | 54695031 | 54695128 | 54695031 | ID=Msa0737440-mRNA-1:cds;Parent=Msa0737440-mRNA-1 |
| chr5_1 | CDS | 54695610 | 54695711 | 54695610 | ID=Msa0737440-mRNA-1:cds;Parent=Msa0737440-mRNA-1 |
| chr5_1 | CDS | 54695841 | 54695927 | 54695841 | ID=Msa0737440-mRNA-1:cds;Parent=Msa0737440-mRNA-1 |
| chr5_1 | CDS | 54696160 | 54696276 | 54696160 | ID=Msa0737440-mRNA-1:cds;Parent=Msa0737440-mRNA-1 |
| chr5_1 | CDS | 54697151 | 54697254 | 54697151 | ID=Msa0737440-mRNA-1:cds;Parent=Msa0737440-mRNA-1 |
| chr5_1 | CDS | 54697491 | 54697630 | 54697491 | ID=Msa0737440-mRNA-1:cds;Parent=Msa0737440-mRNA-1 |
| chr5_1 | CDS | 54697733 | 54697869 | 54697733 | ID=Msa0737440-mRNA-1:cds;Parent=Msa0737440-mRNA-1 |
| chr5_1 | CDS | 54697978 | 54698154 | 54697978 | ID=Msa0737440-mRNA-1:cds;Parent=Msa0737440-mRNA-1 |
| chr5_1 | CDS | 54698418 | 54698543 | 54698418 | ID=Msa0737440-mRNA-1:cds;Parent=Msa0737440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
