Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779240 | XP_024639073.1 | 86.861 | 411 | 12 | 2 | 1 | 370 | 1 | 410 | 0.0 | 717 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779240 | sp|B0C9F4|RLMN_ACAM1 | 45.562 | 338 | 134 | 5 | 45 | 341 | 13 | 341 | 5.17e-101 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779240 | A0A396HUE3 | 86.861 | 411 | 12 | 2 | 1 | 370 | 1 | 410 | 0.0 | 717 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020630 | Msa0779240 | 0.840538 | 8.185884e-58 | -8.615850e-47 |
| Msa0027540 | Msa0779240 | 0.847086 | 1.444289e-59 | -8.615850e-47 |
| Msa0030380 | Msa0779240 | 0.803088 | 4.119675e-49 | -8.615850e-47 |
| Msa0037820 | Msa0779240 | 0.801099 | 1.056446e-48 | -8.615850e-47 |
| Msa0038350 | Msa0779240 | -0.807616 | 4.634204e-50 | -8.615850e-47 |
| Msa0044710 | Msa0779240 | 0.869419 | 3.140434e-66 | -8.615850e-47 |
| Msa0050720 | Msa0779240 | 0.817105 | 3.917682e-52 | -8.615850e-47 |
| Msa0050770 | Msa0779240 | 0.834274 | 3.294511e-56 | -8.615850e-47 |
| Msa0075310 | Msa0779240 | 0.852321 | 4.984246e-61 | -8.615850e-47 |
| Msa0084680 | Msa0779240 | 0.815890 | 7.332195e-52 | -8.615850e-47 |
| Msa0091770 | Msa0779240 | 0.815653 | 8.280589e-52 | -8.615850e-47 |
| Msa0114250 | Msa0779240 | 0.808991 | 2.359127e-50 | -8.615850e-47 |
| Msa0605170 | Msa0779240 | 0.802385 | 5.754140e-49 | -8.615850e-47 |
| Msa0607340 | Msa0779240 | -0.801545 | 8.558764e-49 | -8.615850e-47 |
| Msa0618010 | Msa0779240 | 0.806518 | 7.911880e-50 | -8.615850e-47 |
| Msa0621120 | Msa0779240 | 0.818852 | 1.579246e-52 | -8.615850e-47 |
| Msa0628100 | Msa0779240 | 0.819948 | 8.883649e-53 | -8.615850e-47 |
| Msa0630990 | Msa0779240 | 0.804080 | 2.564995e-49 | -8.615850e-47 |
| Msa0638280 | Msa0779240 | 0.829446 | 5.123641e-55 | -8.615850e-47 |
| Msa0638320 | Msa0779240 | 0.829709 | 4.424046e-55 | -8.615850e-47 |
| Msa0647450 | Msa0779240 | -0.826914 | 2.088720e-54 | -8.615850e-47 |
| Msa0657050 | Msa0779240 | 0.815386 | 9.494120e-52 | -8.615850e-47 |
| Msa0672120 | Msa0779240 | 0.803323 | 3.682228e-49 | -8.615850e-47 |
| Msa0677270 | Msa0779240 | 0.832940 | 7.095062e-56 | -8.615850e-47 |
| Msa0677820 | Msa0779240 | 0.806049 | 9.933506e-50 | -8.615850e-47 |
| Msa0701030 | Msa0779240 | 0.805659 | 1.199840e-49 | -8.615850e-47 |
| Msa0714600 | Msa0779240 | 0.834059 | 3.729559e-56 | -8.615850e-47 |
| Msa0728280 | Msa0779240 | 0.834400 | 3.063595e-56 | -8.615850e-47 |
| Msa0728380 | Msa0779240 | 0.829810 | 4.178816e-55 | -8.615850e-47 |
| Msa0728540 | Msa0779240 | 0.827500 | 1.512124e-54 | -8.615850e-47 |
| Msa0737440 | Msa0779240 | 0.832029 | 1.193375e-55 | -8.615850e-47 |
| Msa0743650 | Msa0779240 | 0.825794 | 3.859005e-54 | -8.615850e-47 |
| Msa0776480 | Msa0779240 | 0.835298 | 1.819932e-56 | -8.615850e-47 |
| Msa0779240 | Msa0795920 | 0.817186 | 3.758074e-52 | -8.615850e-47 |
| Msa0779240 | Msa0816640 | 0.904107 | 1.733877e-79 | -8.615850e-47 |
| Msa0779240 | Msa0828570 | 0.826120 | 3.229347e-54 | -8.615850e-47 |
| Msa0779240 | Msa0842210 | 0.810794 | 9.653935e-51 | -8.615850e-47 |
| Msa0779240 | Msa0847200 | 0.804343 | 2.260399e-49 | -8.615850e-47 |
| Msa0779240 | Msa0863770 | 0.826576 | 2.515494e-54 | -8.615850e-47 |
| Msa0779240 | Msa0909710 | 0.810565 | 1.081963e-50 | -8.615850e-47 |
| Msa0779240 | Msa0950320 | 0.801010 | 1.101771e-48 | -8.615850e-47 |
| Msa0779240 | Msa0961420 | -0.807883 | 4.066458e-50 | -8.615850e-47 |
| Msa0779240 | Msa1004210 | 0.808141 | 3.582555e-50 | -8.615850e-47 |
| Msa0779240 | Msa1007610 | -0.804925 | 1.709743e-49 | -8.615850e-47 |
| Msa0779240 | Msa1037700 | -0.801671 | 8.064424e-49 | -8.615850e-47 |
| Msa0779240 | Msa1038320 | 0.809326 | 1.999758e-50 | -8.615850e-47 |
| Msa0779240 | Msa1046610 | 0.820778 | 5.731293e-53 | -8.615850e-47 |
| Msa0779240 | Msa1072460 | -0.826424 | 2.734253e-54 | -8.615850e-47 |
| Msa0779240 | Msa1103650 | 0.805843 | 1.097569e-49 | -8.615850e-47 |
| Msa0779240 | Msa1111630 | 0.846069 | 2.736933e-59 | -8.615850e-47 |
| Msa0779240 | Msa1112000 | 0.801286 | 9.673378e-49 | -8.615850e-47 |
| Msa0779240 | Msa1130210 | -0.807250 | 5.539533e-50 | -8.615850e-47 |
| Msa0779240 | Msa1132890 | 0.806847 | 6.742912e-50 | -8.615850e-47 |
| Msa0779240 | Msa1133660 | 0.811139 | 8.126973e-51 | -8.615850e-47 |
| Msa0779240 | Msa1167170 | 0.817209 | 3.713757e-52 | -8.615850e-47 |
| Msa0779240 | Msa1177240 | 0.827925 | 1.194753e-54 | -8.615850e-47 |
| Msa0779240 | Msa1188940 | 0.800860 | 1.181929e-48 | -8.615850e-47 |
| Msa0779240 | Msa1205010 | -0.802973 | 4.350872e-49 | -8.615850e-47 |
| Msa0779240 | Msa1217860 | 0.817924 | 2.561622e-52 | -8.615850e-47 |
| Msa0779240 | Msa1243170 | 0.800714 | 1.266269e-48 | -8.615850e-47 |
| Msa0779240 | Msa1256540 | -0.804288 | 2.321030e-49 | -8.615850e-47 |
| Msa0779240 | Msa1265960 | 0.818597 | 1.804160e-52 | -8.615850e-47 |
| Msa0779240 | Msa1284520 | 0.811256 | 7.668285e-51 | -8.615850e-47 |
| Msa0779240 | Msa1296960 | -0.805248 | 1.462800e-49 | -8.615850e-47 |
| Msa0779240 | Msa1304180 | 0.804120 | 2.516348e-49 | -8.615850e-47 |
| Msa0779240 | Msa1317030 | 0.835869 | 1.305108e-56 | -8.615850e-47 |
| Msa0779240 | Msa1335970 | -0.805987 | 1.023849e-49 | -8.615850e-47 |
| Msa0779240 | Msa1347290 | 0.807856 | 4.119386e-50 | -8.615850e-47 |
| Msa0779240 | Msa1375340 | 0.800148 | 1.650859e-48 | -8.615850e-47 |
| Msa0779240 | Msa1410290 | 0.803035 | 4.224881e-49 | -8.615850e-47 |
| Msa0779240 | Msa1427830 | 0.859178 | 4.949581e-63 | -8.615850e-47 |
| Msa0779240 | Msa1431000 | 0.806969 | 6.354517e-50 | -8.615850e-47 |
| Msa0779240 | Msa1439960 | 0.809577 | 1.766172e-50 | -8.615850e-47 |
| Msa0779240 | Msa1440610 | 0.823942 | 1.055659e-53 | -8.615850e-47 |
| Msa0779240 | Msa1449880 | 0.809374 | 1.953023e-50 | -8.615850e-47 |
| Msa0779240 | Msa1453620 | 0.825072 | 5.722119e-54 | -8.615850e-47 |
| Msa0779240 | Msa1454110 | 0.843622 | 1.250884e-58 | -8.615850e-47 |
| Msa0156650 | Msa0779240 | -0.813851 | 2.076231e-51 | -8.615850e-47 |
| Msa0159750 | Msa0779240 | 0.839835 | 1.249140e-57 | -8.615850e-47 |
| Msa0168100 | Msa0779240 | 0.846338 | 2.313062e-59 | -8.615850e-47 |
| Msa0173740 | Msa0779240 | 0.809895 | 1.509473e-50 | -8.615850e-47 |
| Msa0173820 | Msa0779240 | 0.807403 | 5.142090e-50 | -8.615850e-47 |
| Msa0173830 | Msa0779240 | 0.817923 | 2.563131e-52 | -8.615850e-47 |
| Msa0182930 | Msa0779240 | 0.856513 | 3.058281e-62 | -8.615850e-47 |
| Msa0183370 | Msa0779240 | 0.810549 | 1.090758e-50 | -8.615850e-47 |
| Msa0185640 | Msa0779240 | -0.812388 | 4.346977e-51 | -8.615850e-47 |
| Msa0198440 | Msa0779240 | 0.819444 | 1.157910e-52 | -8.615850e-47 |
| Msa0200950 | Msa0779240 | -0.830753 | 2.459426e-55 | -8.615850e-47 |
| Msa0376510 | Msa0779240 | 0.806705 | 7.224378e-50 | -8.615850e-47 |
| Msa0377280 | Msa0779240 | 0.804712 | 1.894133e-49 | -8.615850e-47 |
| Msa0418430 | Msa0779240 | 0.803857 | 2.853010e-49 | -8.615850e-47 |
| Msa0419620 | Msa0779240 | -0.804055 | 2.595313e-49 | -8.615850e-47 |
| Msa0425050 | Msa0779240 | 0.808566 | 2.908264e-50 | -8.615850e-47 |
| Msa0462590 | Msa0779240 | 0.828229 | 1.009620e-54 | -8.615850e-47 |
| Msa0468160 | Msa0779240 | 0.816819 | 4.541947e-52 | -8.615850e-47 |
| Msa0482680 | Msa0779240 | 0.805953 | 1.040506e-49 | -8.615850e-47 |
| Msa0252180 | Msa0779240 | 0.802578 | 5.250441e-49 | -8.615850e-47 |
| Msa0258670 | Msa0779240 | -0.853141 | 2.906723e-61 | -8.615850e-47 |
| Msa0265210 | Msa0779240 | 0.827176 | 1.808186e-54 | -8.615850e-47 |
| Msa0267310 | Msa0779240 | 0.818007 | 2.453457e-52 | -8.615850e-47 |
| Msa0278670 | Msa0779240 | 0.815260 | 1.012890e-51 | -8.615850e-47 |
| Msa0288240 | Msa0779240 | 0.819818 | 9.511589e-53 | -8.615850e-47 |
| Msa0288330 | Msa0779240 | 0.848519 | 5.822014e-60 | -8.615850e-47 |
| Msa0296160 | Msa0779240 | 0.802805 | 4.711873e-49 | -8.615850e-47 |
| Msa0298940 | Msa0779240 | 0.814073 | 1.854915e-51 | -8.615850e-47 |
| Msa0298970 | Msa0779240 | 0.810900 | 9.157021e-51 | -8.615850e-47 |
| Msa0303200 | Msa0779240 | 0.800639 | 1.311494e-48 | -8.615850e-47 |
| Msa0318070 | Msa0779240 | 0.816076 | 6.662971e-52 | -8.615850e-47 |
| Msa0326670 | Msa0779240 | 0.836350 | 9.850073e-57 | -8.615850e-47 |
| Msa0334570 | Msa0779240 | 0.810062 | 1.388963e-50 | -8.615850e-47 |
| Msa0340550 | Msa0779240 | 0.802130 | 6.490950e-49 | -8.615850e-47 |
| Msa0342340 | Msa0779240 | -0.803413 | 3.528416e-49 | -8.615850e-47 |
| Msa0358170 | Msa0779240 | 0.858632 | 7.210587e-63 | -8.615850e-47 |
| Msa0511720 | Msa0779240 | -0.808883 | 2.487967e-50 | -8.615850e-47 |
| Msa0516450 | Msa0779240 | 0.808239 | 3.414769e-50 | -8.615850e-47 |
| Msa0526640 | Msa0779240 | -0.816833 | 4.509785e-52 | -8.615850e-47 |
| Msa0530950 | Msa0779240 | 0.841085 | 5.883661e-58 | -8.615850e-47 |
| Msa0540070 | Msa0779240 | 0.825215 | 5.291925e-54 | -8.615850e-47 |
| Msa0571610 | Msa0779240 | 0.821998 | 2.997144e-53 | -8.615850e-47 |
| Msa0580420 | Msa0779240 | 0.843099 | 1.725441e-58 | -8.615850e-47 |
| Msa0583740 | Msa0779240 | 0.836121 | 1.126695e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779240 | MtrunA17_Chr5g0435221 | 86.861 | 411 | 12 | 2 | 1 | 370 | 1 | 410 | 0.0 | 717 |
| Msa0779240 | MtrunA17_Chr5g0393761 | 34.615 | 286 | 130 | 7 | 118 | 350 | 86 | 367 | 1.81e-39 | 144 |
| Msa0779240 | MtrunA17_Chr8g0365351 | 31.593 | 364 | 176 | 12 | 42 | 340 | 81 | 436 | 4.02e-36 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0779240 | AT2G39670.1 | 62.532 | 387 | 95 | 4 | 16 | 360 | 42 | 420 | 4.73e-164 | 466 |
| Msa0779240 | AT2G39670.2 | 61.795 | 390 | 96 | 5 | 16 | 360 | 42 | 423 | 9.01e-161 | 458 |
| Msa0779240 | AT1G60230.1 | 33.046 | 348 | 178 | 9 | 41 | 340 | 93 | 433 | 5.05e-44 | 158 |
| Msa0779240 | AT3G19630.1 | 34.483 | 290 | 129 | 9 | 116 | 348 | 74 | 359 | 9.07e-41 | 147 |
Find 132 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGACTAATGTAGTCTTTA+TGG | 0.145319 | 5_2:+60421217 | Msa0779240:CDS |
| AACTGAGATTATACTCATTT+TGG | 0.173560 | 5_2:-60423311 | None:intergenic |
| CACCTCTATCACTTCATAAT+TGG | 0.231715 | 5_2:-60423335 | None:intergenic |
| GAGCCTTCTATTGGATTAAA+AGG | 0.231828 | 5_2:-60422882 | None:intergenic |
| TAGAAAGTCTTTAGATTCTT+TGG | 0.239337 | 5_2:+60423469 | Msa0779240:three_prime_UTR |
| GGAATCCCAGCTTCCAAATA+TGG | 0.267536 | 5_2:+60423169 | Msa0779240:CDS |
| CTGAGTTTCGCCGTCCTTAC+AGG | 0.268932 | 5_2:+60422904 | Msa0779240:CDS |
| GAGAAAGGTCAAAGATATTC+AGG | 0.278532 | 5_2:+60419582 | Msa0779240:CDS |
| GTAACTGCAAGGTCCATATT+TGG | 0.284371 | 5_2:-60423182 | None:intergenic |
| TTGCAGTGCCTCAGGCATTT+AGG | 0.286812 | 5_2:+60420047 | Msa0779240:intron |
| AATATGGACCTTGCAGTTAC+AGG | 0.294764 | 5_2:+60423185 | Msa0779240:CDS |
| GGCACACCATTGCTTGAATA+AGG | 0.298869 | 5_2:+60421280 | Msa0779240:CDS |
| CGAAACTCAGAGCCTTCTAT+TGG | 0.317774 | 5_2:-60422891 | None:intergenic |
| TCAGGTTCTCCTTGGCTTAT+CGG | 0.320299 | 5_2:+60419369 | Msa0779240:CDS |
| ATTGTTGGTAATAAGTGATT+AGG | 0.320504 | 5_2:+60423555 | Msa0779240:three_prime_UTR |
| GTGCCCCAAGTACTGCCTTC+AGG | 0.344031 | 5_2:-60421262 | None:intergenic |
| TTATATATACTAAACAAGTT+TGG | 0.347588 | 5_2:+60423262 | Msa0779240:three_prime_UTR |
| GTGCATAGTGAACCACTTAA+AGG | 0.352529 | 5_2:-60423769 | None:intergenic |
| GTTAAAACACAGGCGTTGTT+TGG | 0.355378 | 5_2:+60423737 | Msa0779240:three_prime_UTR |
| GAACCCTTCTCATCTTCATT+AGG | 0.357570 | 5_2:-60420683 | None:intergenic |
| CACACACAATGTCAGTTTCA+TGG | 0.357900 | 5_2:+60423215 | Msa0779240:three_prime_UTR |
| GCAAGCATTTGTTAATGCTT+TGG | 0.362056 | 5_2:+60423025 | Msa0779240:CDS |
| GCTAAACTACTACATGAATA+TGG | 0.366452 | 5_2:+60422834 | Msa0779240:CDS |
| CAGAAACTTGCCCTTGACTT+TGG | 0.378198 | 5_2:+60419403 | Msa0779240:CDS |
| ATTGTAACTCAGGCAGTAAC+AGG | 0.385395 | 5_2:-60423361 | None:intergenic |
| TGCTTGCATTGCAGTGCCTC+AGG | 0.385823 | 5_2:+60420039 | Msa0779240:intron |
| AGGAATGAGCTTGGGGAAGC+TGG | 0.387560 | 5_2:+60420067 | Msa0779240:CDS |
| ACATAAATATATAATGCAAA+AGG | 0.390056 | 5_2:-60423629 | None:intergenic |
| TTAGGACTTTGTAGTTCATA+TGG | 0.394822 | 5_2:+60423573 | Msa0779240:three_prime_UTR |
| CCTCAGTCTCAGGTTCTCCT+TGG | 0.396335 | 5_2:+60419361 | Msa0779240:CDS |
| GTGACTAATGTAGTCTTTAT+GGG | 0.396455 | 5_2:+60421218 | Msa0779240:CDS |
| TTTGCAGTTGTTATTGAAGT+TGG | 0.398916 | 5_2:+60420628 | Msa0779240:intron |
| TGCATTTGCGTCCAGTCCTC+TGG | 0.405368 | 5_2:-60423081 | None:intergenic |
| CAATTTCCAGAAAACACCTT+TGG | 0.405431 | 5_2:+60423124 | Msa0779240:CDS |
| TTGCGTCCAGTCCTCTGGTT+TGG | 0.406021 | 5_2:-60423076 | None:intergenic |
| AAACCTGCTCAACAATTTCA+TGG | 0.407549 | 5_2:-60420934 | None:intergenic |
| TATCATACTGCTTTCCTGTA+AGG | 0.409585 | 5_2:-60422918 | None:intergenic |
| AGGCATTTAGGAATGAGCTT+GGG | 0.424954 | 5_2:+60420059 | Msa0779240:CDS |
| GCAACAACAGTGTTGAAAAC+TGG | 0.434797 | 5_2:-60420109 | None:intergenic |
| ATGCTCCTAACCAGAAACTA+AGG | 0.440088 | 5_2:+60422559 | Msa0779240:intron |
| TTAAACCTGAAGGCAGTACT+TGG | 0.440485 | 5_2:+60421257 | Msa0779240:CDS |
| CATAAATATATAATGCAAAA+GGG | 0.443153 | 5_2:-60423628 | None:intergenic |
| AACACTGTTGTTGCAACGGA+TGG | 0.445377 | 5_2:+60420118 | Msa0779240:CDS |
| AAGGGCAAGTTTCTGAAGTT+CGG | 0.446724 | 5_2:-60419395 | None:intergenic |
| CAAGGTCCATATTTGGAAGC+TGG | 0.447943 | 5_2:-60423175 | None:intergenic |
| CAGCACAATTCCTCAGTCTC+AGG | 0.454273 | 5_2:+60419351 | Msa0779240:CDS |
| GAGCCATGAAATTGTTGAGC+AGG | 0.455181 | 5_2:+60420931 | Msa0779240:CDS |
| ACTTGCCCTTGACTTTGGTC+AGG | 0.460743 | 5_2:+60419408 | Msa0779240:CDS |
| AATGTAGTCTTTATGGGAAT+GGG | 0.461630 | 5_2:+60421224 | Msa0779240:CDS |
| GTGCGAGGGGCATGGAATAG+TGG | 0.472551 | 5_2:-60419261 | None:intergenic |
| TGGAATGCACATCCTTTAAG+TGG | 0.474097 | 5_2:+60423757 | Msa0779240:three_prime_UTR |
| CTACCACGAGCAAATATTGT+TGG | 0.482389 | 5_2:+60423540 | Msa0779240:three_prime_UTR |
| TAGATTCTTTGGCAGCTAAG+AGG | 0.484802 | 5_2:+60423480 | Msa0779240:three_prime_UTR |
| TTTCATAAGAAACAACCTAC+TGG | 0.488581 | 5_2:+60423506 | Msa0779240:three_prime_UTR |
| CGCAGACTCTGACTACAATC+TGG | 0.489594 | 5_2:+60423148 | Msa0779240:CDS |
| AGGAGAAGAAGAAGTTGCGA+AGG | 0.490094 | 5_2:-60419323 | None:intergenic |
| TGTAGTTCATATGGTGCACT+TGG | 0.490531 | 5_2:+60423582 | Msa0779240:three_prime_UTR |
| TGCAACGGATGGAACTGTTA+AGG | 0.495578 | 5_2:+60420129 | Msa0779240:CDS |
| AGATTCTTTGGCAGCTAAGA+GGG | 0.496319 | 5_2:+60423481 | Msa0779240:three_prime_UTR |
| AGAAGAAGTTGCGAAGGAAA+TGG | 0.498648 | 5_2:-60419317 | None:intergenic |
| AAGGTCCATATTTGGAAGCT+GGG | 0.504412 | 5_2:-60423174 | None:intergenic |
| GCGGCACGTGTGCGAGGTGA+AGG | 0.504678 | 5_2:-60419295 | None:intergenic |
| CATTCACCTTATTCAAGCAA+TGG | 0.504951 | 5_2:-60421286 | None:intergenic |
| TCATCTTATATATAAGAGAA+AGG | 0.508314 | 5_2:+60419567 | Msa0779240:CDS |
| CAGGCATTTAGGAATGAGCT+TGG | 0.509255 | 5_2:+60420058 | Msa0779240:CDS |
| TAATGTAGTCTTTATGGGAA+TGG | 0.509539 | 5_2:+60421223 | Msa0779240:CDS |
| TACCAATTATGAAGTGATAG+AGG | 0.515017 | 5_2:+60423333 | Msa0779240:three_prime_UTR |
| AGATATTCAGGAGTTTACTC+AGG | 0.515694 | 5_2:+60419594 | Msa0779240:CDS |
| CACCACACGTGCGAGGGGCA+TGG | 0.521716 | 5_2:-60419269 | None:intergenic |
| GCGTTTGAACACCTCCTCAA+TGG | 0.524945 | 5_2:-60421192 | None:intergenic |
| GACAGCATGTGTCTCATCAC+AGG | 0.527434 | 5_2:+60420715 | Msa0779240:CDS |
| TAAACCTGAAGGCAGTACTT+GGG | 0.530652 | 5_2:+60421258 | Msa0779240:CDS |
| AAGCTGGATGGAAGGTCGGA+CGG | 0.533773 | 5_2:+60420083 | Msa0779240:CDS |
| GAAAGTTGACATTGTAACTC+AGG | 0.538959 | 5_2:-60423371 | None:intergenic |
| TTCCATGCCCCTCGCACGTG+TGG | 0.543811 | 5_2:+60419267 | Msa0779240:CDS |
| GGGGAAGCTGGATGGAAGGT+CGG | 0.545686 | 5_2:+60420079 | Msa0779240:CDS |
| ATGAGCTTGGGGAAGCTGGA+TGG | 0.546800 | 5_2:+60420071 | Msa0779240:CDS |
| CTTGCATAAGTGCATCCAAT+GGG | 0.551233 | 5_2:-60422611 | None:intergenic |
| AAGTGCAAAGTCTTACCCAT+TGG | 0.552672 | 5_2:+60422596 | Msa0779240:CDS |
| TGCACTTATGCAAGACTGCA+AGG | 0.557442 | 5_2:+60422620 | Msa0779240:CDS |
| ATGCAGCTTGTGGTCAGCTA+CGG | 0.561024 | 5_2:+60423099 | Msa0779240:CDS |
| ACCTAAAAGTGCATATTCAA+AGG | 0.561121 | 5_2:-60422673 | None:intergenic |
| TTTCAACACTGTTGTTGCAA+CGG | 0.563769 | 5_2:+60420114 | Msa0779240:CDS |
| TCTGGTTTGGCGTACACTAG+TGG | 0.566254 | 5_2:-60423063 | None:intergenic |
| GGCATTTAGGAATGAGCTTG+GGG | 0.567730 | 5_2:+60420060 | Msa0779240:CDS |
| CTTCCGCGAAACAAGTAGAC+GGG | 0.568795 | 5_2:+60422647 | Msa0779240:CDS |
| TATTCCTAATGAAGATGAGA+AGG | 0.569257 | 5_2:+60420679 | Msa0779240:CDS |
| AACAGATTGATTGAAACTGT+TGG | 0.569401 | 5_2:+60420656 | Msa0779240:CDS |
| AATGGGTAAGACTTTGCACT+TGG | 0.575944 | 5_2:-60422594 | None:intergenic |
| AAACCCGTCTACTTGTTTCG+CGG | 0.576482 | 5_2:-60422650 | None:intergenic |
| CCAAGGAGAACCTGAGACTG+AGG | 0.576686 | 5_2:-60419361 | None:intergenic |
| TAGTCAGAGTCTGCGGCCAA+AGG | 0.577830 | 5_2:-60423140 | None:intergenic |
| GTGATGAGACACATGCTGTC+AGG | 0.578912 | 5_2:-60420712 | None:intergenic |
| GTAGTAACTAAATTTCCAGT+AGG | 0.581507 | 5_2:-60423521 | None:intergenic |
| TGTACGCCAAACCAGAGGAC+TGG | 0.586064 | 5_2:+60423070 | Msa0779240:CDS |
| TTGAGGAGGTGTTCAAACGC+AGG | 0.587360 | 5_2:+60421195 | Msa0779240:CDS |
| GATATTCAGGAGTTTACTCA+GGG | 0.588295 | 5_2:+60419595 | Msa0779240:CDS |
| GTTTGGACTAAAACAATGAG+AGG | 0.588656 | 5_2:+60423279 | Msa0779240:three_prime_UTR |
| TGAACAGGTCTTGGCCATTG+AGG | 0.590271 | 5_2:+60421178 | Msa0779240:intron |
| TGCTCCTAACCAGAAACTAA+GGG | 0.592577 | 5_2:+60422560 | Msa0779240:intron |
| CTACTACATGAATATGGCAG+TGG | 0.597183 | 5_2:+60422840 | Msa0779240:CDS |
| TGAACCAATGTTAAACCTGA+AGG | 0.600380 | 5_2:+60421247 | Msa0779240:CDS |
| GTAGTTCATATGGTGCACTT+GGG | 0.600828 | 5_2:+60423583 | Msa0779240:three_prime_UTR |
| AATTTACCTGACCAAAGTCA+AGG | 0.603496 | 5_2:-60419414 | None:intergenic |
| AAGGACGCACCACACGTGCG+AGG | 0.603642 | 5_2:-60419276 | None:intergenic |
| GCTTGGGGAAGCTGGATGGA+AGG | 0.604593 | 5_2:+60420075 | Msa0779240:CDS |
| GAAATGGCGGCACGTGTGCG+AGG | 0.604749 | 5_2:-60419301 | None:intergenic |
| ACTGCCTTCAGGTTTAACAT+TGG | 0.604771 | 5_2:-60421251 | None:intergenic |
| GTTCGGTTTCCGATAAGCCA+AGG | 0.607702 | 5_2:-60419378 | None:intergenic |
| GGACGCACCACACGTGCGAG+GGG | 0.610180 | 5_2:-60419274 | None:intergenic |
| AGGACGCACCACACGTGCGA+GGG | 0.610726 | 5_2:-60419275 | None:intergenic |
| AAACCTGAAGGCAGTACTTG+GGG | 0.612474 | 5_2:+60421259 | Msa0779240:CDS |
| TGAGGAGGTGTTCAAACGCA+GGG | 0.618525 | 5_2:+60421196 | Msa0779240:CDS |
| ATAAATATATAATGCAAAAG+GGG | 0.620266 | 5_2:-60423627 | None:intergenic |
| TGAGGAATTGTGCTGCGAGG+AGG | 0.629383 | 5_2:-60419343 | None:intergenic |
| ATTTACCTGACCAAAGTCAA+GGG | 0.630175 | 5_2:-60419413 | None:intergenic |
| AGCAGCTGGAATCAATGACT+CGG | 0.632061 | 5_2:+60422791 | Msa0779240:intron |
| TCTTGCATAAGTGCATCCAA+TGG | 0.635870 | 5_2:-60422612 | None:intergenic |
| ATACTGCTTTCCTGTAAGGA+CGG | 0.636058 | 5_2:-60422914 | None:intergenic |
| ACAGGTCTTGGCCATTGAGG+AGG | 0.637192 | 5_2:+60421181 | Msa0779240:intron |
| ATTCCTAATGAAGATGAGAA+GGG | 0.637233 | 5_2:+60420680 | Msa0779240:CDS |
| TTACCAACAATATTTGCTCG+TGG | 0.642749 | 5_2:-60423543 | None:intergenic |
| TTCTTGCTAGCAGAGAAATG+TGG | 0.644446 | 5_2:+60423391 | Msa0779240:three_prime_UTR |
| AGCTCATTCCTAAATGCCTG+AGG | 0.647100 | 5_2:-60420055 | None:intergenic |
| GCAATCAACCTGTAACTGCA+AGG | 0.653477 | 5_2:-60423193 | None:intergenic |
| ACTTCCGCGAAACAAGTAGA+CGG | 0.656727 | 5_2:+60422646 | Msa0779240:CDS |
| GACTGAGGAATTGTGCTGCG+AGG | 0.664759 | 5_2:-60419346 | None:intergenic |
| CAGATTGTAGTCAGAGTCTG+CGG | 0.672350 | 5_2:-60423147 | None:intergenic |
| AATGTGGAGAAGCATCTATG+TGG | 0.673433 | 5_2:+60423407 | Msa0779240:three_prime_UTR |
| AGAAGTTGCGAAGGAAATGG+CGG | 0.675289 | 5_2:-60419314 | None:intergenic |
| CTGGACGCAAATGCAGCTTG+TGG | 0.692862 | 5_2:+60423089 | Msa0779240:CDS |
| ACTAGTGTACGCCAAACCAG+AGG | 0.706693 | 5_2:+60423065 | Msa0779240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGTTAGATTTTTATATT+GGG | - | chr5_2:60421578-60421597 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAATCTGTTTTAA+CGG | - | chr5_2:60423687-60423706 | None:intergenic | 10.0% |
| !! | AAAAAACAATAAATTAACAA+AGG | - | chr5_2:60423711-60423730 | None:intergenic | 10.0% |
| !! | TCAAGTTAATAATGTAATAA+TGG | - | chr5_2:60419462-60419481 | None:intergenic | 15.0% |
| !! | AAATAAAAATGTTAACAGAA+AGG | + | chr5_2:60421048-60421067 | Msa0779240:intron | 15.0% |
| !!! | GTAATGTTAGATTTTTATAT+TGG | - | chr5_2:60421579-60421598 | None:intergenic | 15.0% |
| !!! | AATTAGTTATGTTTTATGTT+TGG | + | chr5_2:60421825-60421844 | Msa0779240:intron | 15.0% |
| !! | ATCATCACAATAAATATAAA+AGG | - | chr5_2:60422131-60422150 | None:intergenic | 15.0% |
| !! | TAAACACGATTTATAATTTA+TGG | + | chr5_2:60422964-60422983 | Msa0779240:intron | 15.0% |
| !! | TTATATATACTAAACAAGTT+TGG | + | chr5_2:60423262-60423281 | Msa0779240:three_prime_UTR | 15.0% |
| !! | ATAAATATATAATGCAAAAG+GGG | - | chr5_2:60423630-60423649 | None:intergenic | 15.0% |
| !! | CATAAATATATAATGCAAAA+GGG | - | chr5_2:60423631-60423650 | None:intergenic | 15.0% |
| !! | ACATAAATATATAATGCAAA+AGG | - | chr5_2:60423632-60423651 | None:intergenic | 15.0% |
| !!! | TTACATTATTAACTTGAACT+TGG | + | chr5_2:60419465-60419484 | Msa0779240:intron | 20.0% |
| !! | TCATCTTATATATAAGAGAA+AGG | + | chr5_2:60419567-60419586 | Msa0779240:CDS | 20.0% |
| !! | ATATGTATTATTGAGTAAGA+AGG | + | chr5_2:60419681-60419700 | Msa0779240:intron | 20.0% |
| !! | TCATTGTATCAAGTTATTAT+CGG | + | chr5_2:60419764-60419783 | Msa0779240:intron | 20.0% |
| !!! | TCTATTTTATCAACTATTCA+TGG | + | chr5_2:60419935-60419954 | Msa0779240:intron | 20.0% |
| !! | TTAAAAACAACAACAACAAT+AGG | - | chr5_2:60420182-60420201 | None:intergenic | 20.0% |
| !!! | ATTCTTGTTTTTCTATTTGT+TGG | + | chr5_2:60420597-60420616 | Msa0779240:intron | 20.0% |
| !! | TAAATATCCAAATAACAGAT+GGG | - | chr5_2:60420845-60420864 | None:intergenic | 20.0% |
| !!! | TTACAAGCAAATATTTGTTA+AGG | - | chr5_2:60421338-60421357 | None:intergenic | 20.0% |
| !!! | TTTAATTTCTATAGAACTTC+TGG | - | chr5_2:60421782-60421801 | None:intergenic | 20.0% |
| !! | AGTTCTATAGAAATTAAAAC+AGG | + | chr5_2:60421784-60421803 | Msa0779240:intron | 20.0% |
| !!! | TAATTTGCTCTTTTATGTTA+TGG | - | chr5_2:60421810-60421829 | None:intergenic | 20.0% |
| !! | AAAATATTCATGCATACATA+TGG | + | chr5_2:60421903-60421922 | Msa0779240:intron | 20.0% |
| !!! | TGATAAATGATTTCTTTTGA+CGG | - | chr5_2:60421933-60421952 | None:intergenic | 20.0% |
| !! | TTGTTGAATTTTTCTTAGCA+AGG | + | chr5_2:60419523-60419542 | Msa0779240:intron | 25.0% |
| !! | ATTTTTCTTAGCAAGGTTTT+AGG | + | chr5_2:60419530-60419549 | Msa0779240:intron | 25.0% |
| !! | TTTTTCTTAGCAAGGTTTTA+GGG | + | chr5_2:60419531-60419550 | Msa0779240:intron | 25.0% |
| ! | CCAAAAACAACAACAAAATA+AGG | - | chr5_2:60419641-60419660 | None:intergenic | 25.0% |
| !!! | CCTTATTTTGTTGTTGTTTT+TGG | + | chr5_2:60419638-60419657 | Msa0779240:intron | 25.0% |
| ! | TATCAAATTATTAGCTGTGT+CGG | + | chr5_2:60419867-60419886 | Msa0779240:intron | 25.0% |
| !!! | AAAGTATTAACTTTTCGATG+TGG | + | chr5_2:60420002-60420021 | Msa0779240:intron | 25.0% |
| !! | TTTTTAAACTTATGTGACAC+TGG | + | chr5_2:60420300-60420319 | Msa0779240:intron | 25.0% |
| ! | AAAAATGAGATCAATGTCAA+TGG | - | chr5_2:60420455-60420474 | None:intergenic | 25.0% |
| !!! | TGATTCAAGTTGTTTTCTTT+TGG | + | chr5_2:60420482-60420501 | Msa0779240:intron | 25.0% |
| !!! | TTTTCTTTTGGTGTTTTACT+TGG | + | chr5_2:60420494-60420513 | Msa0779240:intron | 25.0% |
| ! | ACTTGGTATTCTTAAGAATA+AGG | + | chr5_2:60420511-60420530 | Msa0779240:intron | 25.0% |
| ! | CTTGGTATTCTTAAGAATAA+GGG | + | chr5_2:60420512-60420531 | Msa0779240:intron | 25.0% |
| !!! | GATATTAACTTGCTTGTTAA+AGG | + | chr5_2:60420538-60420557 | Msa0779240:intron | 25.0% |
| ! | ATCAGTGCATAAAAAAATCA+AGG | - | chr5_2:60420579-60420598 | None:intergenic | 25.0% |
| ! | CTAAATATCCAAATAACAGA+TGG | - | chr5_2:60420846-60420865 | None:intergenic | 25.0% |
| !! | CATCTGTTATTTGGATATTT+AGG | + | chr5_2:60420844-60420863 | Msa0779240:intron | 25.0% |
| !! | TGTTATTTGGATATTTAGGT+AGG | + | chr5_2:60420848-60420867 | Msa0779240:intron | 25.0% |
| ! | AAACTACTCTAATGTATCTA+TGG | - | chr5_2:60420964-60420983 | None:intergenic | 25.0% |
| ! | AATTTATTTATGGATCACGT+GGG | - | chr5_2:60420999-60421018 | None:intergenic | 25.0% |
| ! | ATCCATAAATAAATTGCCTA+AGG | + | chr5_2:60421004-60421023 | Msa0779240:intron | 25.0% |
| ! | AATTGAATCTAAATTGCCTT+AGG | - | chr5_2:60421023-60421042 | None:intergenic | 25.0% |
| ! | AAAATGTTAACAGAAAGGAA+AGG | + | chr5_2:60421053-60421072 | Msa0779240:intron | 25.0% |
| !! | TAAAGCAATGAGATCATTTT+CGG | + | chr5_2:60421088-60421107 | Msa0779240:intron | 25.0% |
| !! | ACATTGAATTTTATGTGAAC+AGG | + | chr5_2:60421163-60421182 | Msa0779240:intron | 25.0% |
| ! | TAACATTATCACTTAAACTC+TGG | + | chr5_2:60421428-60421447 | Msa0779240:intron | 25.0% |
| ! | AACATTATCACTTAAACTCT+GGG | + | chr5_2:60421429-60421448 | Msa0779240:intron | 25.0% |
| !!! | ACTCATTGGTTTTTACTTAT+TGG | + | chr5_2:60421452-60421471 | Msa0779240:intron | 25.0% |
| !!! | CTCATTGGTTTTTACTTATT+GGG | + | chr5_2:60421453-60421472 | Msa0779240:intron | 25.0% |
| !! | TGTAATATCATCTTTTCATG+CGG | + | chr5_2:60421713-60421732 | Msa0779240:intron | 25.0% |
| ! | ATGTTTGGTACATTGTAAAA+CGG | + | chr5_2:60421840-60421859 | Msa0779240:intron | 25.0% |
| !!! | ATATTTTTATGCATGTGAGA+CGG | - | chr5_2:60421890-60421909 | None:intergenic | 25.0% |
| ! | TTCTTGTAGGATATACAAAT+TGG | + | chr5_2:60422205-60422224 | Msa0779240:intron | 25.0% |
| ! | TCTTGTAGGATATACAAATT+GGG | + | chr5_2:60422206-60422225 | Msa0779240:intron | 25.0% |
| ! | GCTAACTTCTTTATTGTATT+TGG | - | chr5_2:60422265-60422284 | None:intergenic | 25.0% |
| !! | CCATCAAATGATATATTTTG+CGG | - | chr5_2:60422451-60422470 | None:intergenic | 25.0% |
| !! | ATACCTTTTAATCCAATAGA+AGG | + | chr5_2:60422879-60422898 | Msa0779240:CDS | 25.0% |
| ! | TCAATCCAAACTTTGTAATT+TGG | + | chr5_2:60422997-60423016 | Msa0779240:intron | 25.0% |
| !! | AACTGAGATTATACTCATTT+TGG | - | chr5_2:60423314-60423333 | None:intergenic | 25.0% |
| ! | TAGAAAGTCTTTAGATTCTT+TGG | + | chr5_2:60423469-60423488 | Msa0779240:three_prime_UTR | 25.0% |
| !!! | ATTGTTGGTAATAAGTGATT+AGG | + | chr5_2:60423555-60423574 | Msa0779240:three_prime_UTR | 25.0% |
| !! | TTTTCTTAGCAAGGTTTTAG+GGG | + | chr5_2:60419532-60419551 | Msa0779240:intron | 30.0% |
| TTTATCAACTATTCATGGTG+TGG | + | chr5_2:60419940-60419959 | Msa0779240:intron | 30.0% | |
| !!! | TTCCTGCTAACCATTTTTTA+TGG | + | chr5_2:60420209-60420228 | Msa0779240:intron | 30.0% |
| !!! | TCCTGCTAACCATTTTTTAT+GGG | + | chr5_2:60420210-60420229 | Msa0779240:intron | 30.0% |
| TTGTGATACCCCATAAAAAA+TGG | - | chr5_2:60420222-60420241 | None:intergenic | 30.0% | |
| AGACATCTCAAGATATAAAG+TGG | - | chr5_2:60420405-60420424 | None:intergenic | 30.0% | |
| CAAATTACATTTGCGTTTAG+AGG | - | chr5_2:60420429-60420448 | None:intergenic | 30.0% | |
| !! | TGACATTGATCTCATTTTTC+CGG | + | chr5_2:60420456-60420475 | Msa0779240:intron | 30.0% |
| AAAACAACTTGAATCATTGC+CGG | - | chr5_2:60420478-60420497 | None:intergenic | 30.0% | |
| GTATTCTTAAGAATAAGGGT+AGG | + | chr5_2:60420516-60420535 | Msa0779240:intron | 30.0% | |
| !! | TTAACTTGCTTGTTAAAGGA+TGG | + | chr5_2:60420542-60420561 | Msa0779240:intron | 30.0% |
| !! | TAACTTGCTTGTTAAAGGAT+GGG | + | chr5_2:60420543-60420562 | Msa0779240:intron | 30.0% |
| ! | TTTGCAGTTGTTATTGAAGT+TGG | + | chr5_2:60420628-60420647 | Msa0779240:intron | 30.0% |
| AACAGATTGATTGAAACTGT+TGG | + | chr5_2:60420656-60420675 | Msa0779240:CDS | 30.0% | |
| TATTCCTAATGAAGATGAGA+AGG | + | chr5_2:60420679-60420698 | Msa0779240:CDS | 30.0% | |
| ATTCCTAATGAAGATGAGAA+GGG | + | chr5_2:60420680-60420699 | Msa0779240:CDS | 30.0% | |
| ATGGGCATAACAAAAACAAA+TGG | - | chr5_2:60420827-60420846 | None:intergenic | 30.0% | |
| CAATTTATTTATGGATCACG+TGG | - | chr5_2:60421000-60421019 | None:intergenic | 30.0% | |
| TGCCTTAGGCAATTTATTTA+TGG | - | chr5_2:60421009-60421028 | None:intergenic | 30.0% | |
| ! | AAAGCAATGAGATCATTTTC+GGG | + | chr5_2:60421089-60421108 | Msa0779240:intron | 30.0% |
| ! | AATTTTATGTGAACAGGTCT+TGG | + | chr5_2:60421169-60421188 | Msa0779240:intron | 30.0% |
| GTGACTAATGTAGTCTTTAT+GGG | + | chr5_2:60421218-60421237 | Msa0779240:CDS | 30.0% | |
| TAATGTAGTCTTTATGGGAA+TGG | + | chr5_2:60421223-60421242 | Msa0779240:CDS | 30.0% | |
| AATGTAGTCTTTATGGGAAT+GGG | + | chr5_2:60421224-60421243 | Msa0779240:CDS | 30.0% | |
| ! | TTTAGAGTTTAAACCTGCAA+TGG | + | chr5_2:60421383-60421402 | Msa0779240:intron | 30.0% |
| ACCTCTCTTTATAAACTCAT+TGG | - | chr5_2:60421514-60421533 | None:intergenic | 30.0% | |
| ATTCCATCTTAGTAAGTGTT+AGG | + | chr5_2:60421612-60421631 | Msa0779240:intron | 30.0% | |
| ATTCCATCTTAGTAAGTGTT+AGG | + | chr5_2:60421612-60421631 | Msa0779240:intron | 30.0% | |
| ! | GATCAGAATAAAGTTTTGCT+TGG | + | chr5_2:60422095-60422114 | Msa0779240:intron | 30.0% |
| CCGCAAAATATATCATTTGA+TGG | + | chr5_2:60422448-60422467 | Msa0779240:intron | 30.0% | |
| !!! | TCATTTGATGGCTTTTTTAG+TGG | + | chr5_2:60422460-60422479 | Msa0779240:intron | 30.0% |
| ! | TCCTTTGAATATGCACTTTT+AGG | + | chr5_2:60422672-60422691 | Msa0779240:CDS | 30.0% |
| ! | ACCTAAAAGTGCATATTCAA+AGG | - | chr5_2:60422676-60422695 | None:intergenic | 30.0% |
| !! | TGAATATGCACTTTTAGGTA+CGG | + | chr5_2:60422677-60422696 | Msa0779240:intron | 30.0% |
| GCTAAACTACTACATGAATA+TGG | + | chr5_2:60422834-60422853 | Msa0779240:CDS | 30.0% | |
| TCCAAACTTTGTAATTTGGT+AGG | + | chr5_2:60423001-60423020 | Msa0779240:intron | 30.0% | |
| ACCTACCAAATTACAAAGTT+TGG | - | chr5_2:60423005-60423024 | None:intergenic | 30.0% | |
| TACCAATTATGAAGTGATAG+AGG | + | chr5_2:60423333-60423352 | Msa0779240:three_prime_UTR | 30.0% | |
| TTTCATAAGAAACAACCTAC+TGG | + | chr5_2:60423506-60423525 | Msa0779240:three_prime_UTR | 30.0% | |
| GTAGTAACTAAATTTCCAGT+AGG | - | chr5_2:60423524-60423543 | None:intergenic | 30.0% | |
| TTAGGACTTTGTAGTTCATA+TGG | + | chr5_2:60423573-60423592 | Msa0779240:three_prime_UTR | 30.0% | |
| ! | GGGAGATATTTTTCATGTAT+TGG | + | chr5_2:60423603-60423622 | Msa0779240:three_prime_UTR | 30.0% |
| !! | TTTTGTTGCTGTTAAAACAC+AGG | + | chr5_2:60423727-60423746 | Msa0779240:three_prime_UTR | 30.0% |
| ATTTACCTGACCAAAGTCAA+GGG | - | chr5_2:60419416-60419435 | None:intergenic | 35.0% | |
| AATTTACCTGACCAAAGTCA+AGG | - | chr5_2:60419417-60419436 | None:intergenic | 35.0% | |
| GAGAAAGGTCAAAGATATTC+AGG | + | chr5_2:60419582-60419601 | Msa0779240:CDS | 35.0% | |
| AGATATTCAGGAGTTTACTC+AGG | + | chr5_2:60419594-60419613 | Msa0779240:CDS | 35.0% | |
| GATATTCAGGAGTTTACTCA+GGG | + | chr5_2:60419595-60419614 | Msa0779240:CDS | 35.0% | |
| !! | TGTTTCAGTGTAGCATTGAT+AGG | + | chr5_2:60419806-60419825 | Msa0779240:intron | 35.0% |
| TGATAGGATACTAACACAGA+TGG | + | chr5_2:60419822-60419841 | Msa0779240:intron | 35.0% | |
| !!! | GTTGGTTTTAGTGTTGTGTT+TGG | + | chr5_2:60419967-60419986 | Msa0779240:intron | 35.0% |
| TTTCAACACTGTTGTTGCAA+CGG | + | chr5_2:60420114-60420133 | Msa0779240:CDS | 35.0% | |
| !!! | CCTGCTAACCATTTTTTATG+GGG | + | chr5_2:60420211-60420230 | Msa0779240:intron | 35.0% |
| TGTTATGCCCATCTGTTATT+TGG | + | chr5_2:60420835-60420854 | Msa0779240:intron | 35.0% | |
| !! | CACAAAAAGAGCATTTCAGA+GGG | - | chr5_2:60420877-60420896 | None:intergenic | 35.0% |
| AAACCTGCTCAACAATTTCA+TGG | - | chr5_2:60420937-60420956 | None:intergenic | 35.0% | |
| TTCAATGTTATCCTGCTTTG+TGG | - | chr5_2:60421151-60421170 | None:intergenic | 35.0% | |
| GGTGACTAATGTAGTCTTTA+TGG | + | chr5_2:60421217-60421236 | Msa0779240:CDS | 35.0% | |
| TGAACCAATGTTAAACCTGA+AGG | + | chr5_2:60421247-60421266 | Msa0779240:CDS | 35.0% | |
| CATTCACCTTATTCAAGCAA+TGG | - | chr5_2:60421289-60421308 | None:intergenic | 35.0% | |
| GCCAATGAGTTTATAAAGAG+AGG | + | chr5_2:60421510-60421529 | Msa0779240:intron | 35.0% | |
| GAACCTAACACTTACTAAGA+TGG | - | chr5_2:60421618-60421637 | None:intergenic | 35.0% | |
| GAACCTAACACTTACTAAGA+TGG | - | chr5_2:60421618-60421637 | None:intergenic | 35.0% | |
| ! | AATATCATCTTTTCATGCGG+AGG | + | chr5_2:60421716-60421735 | Msa0779240:intron | 35.0% |
| ! | AGGGACATGGATTTCTTTTA+TGG | + | chr5_2:60421739-60421758 | Msa0779240:intron | 35.0% |
| TTGCACTAAATAGCGTATCA+CGG | - | chr5_2:60421982-60422001 | None:intergenic | 35.0% | |
| GTATGTAAGTGTGCTAATGT+TGG | + | chr5_2:60422169-60422188 | Msa0779240:intron | 35.0% | |
| ACTGACAAGATCAGAATCAA+GGG | - | chr5_2:60422328-60422347 | None:intergenic | 35.0% | |
| GATCTTGTCAGTCAAGAATT+AGG | + | chr5_2:60422336-60422355 | Msa0779240:intron | 35.0% | |
| TTCGTTCGTTGTTCATAATC+TGG | + | chr5_2:60422401-60422420 | Msa0779240:intron | 35.0% | |
| TCATTAACCTTACTGTACGA+GGG | - | chr5_2:60422729-60422748 | None:intergenic | 35.0% | |
| TTCATTAACCTTACTGTACG+AGG | - | chr5_2:60422730-60422749 | None:intergenic | 35.0% | |
| CAAACATAATGACAGGAAAG+TGG | - | chr5_2:60422771-60422790 | None:intergenic | 35.0% | |
| GAGCCTTCTATTGGATTAAA+AGG | - | chr5_2:60422885-60422904 | None:intergenic | 35.0% | |
| TATCATACTGCTTTCCTGTA+AGG | - | chr5_2:60422921-60422940 | None:intergenic | 35.0% | |
| ! | GCAAGCATTTGTTAATGCTT+TGG | + | chr5_2:60423025-60423044 | Msa0779240:CDS | 35.0% |
| CAATTTCCAGAAAACACCTT+TGG | + | chr5_2:60423124-60423143 | Msa0779240:CDS | 35.0% | |
| GTTTGGACTAAAACAATGAG+AGG | + | chr5_2:60423279-60423298 | Msa0779240:three_prime_UTR | 35.0% | |
| CACCTCTATCACTTCATAAT+TGG | - | chr5_2:60423338-60423357 | None:intergenic | 35.0% | |
| GAAAGTTGACATTGTAACTC+AGG | - | chr5_2:60423374-60423393 | None:intergenic | 35.0% | |
| !!! | AGAAGCATCTATGTGGTTTT+TGG | + | chr5_2:60423414-60423433 | Msa0779240:three_prime_UTR | 35.0% |
| !!! | GGTTTTTGGCACTAATTTTG+TGG | + | chr5_2:60423428-60423447 | Msa0779240:three_prime_UTR | 35.0% |
| TTACCAACAATATTTGCTCG+TGG | - | chr5_2:60423546-60423565 | None:intergenic | 35.0% | |
| AGAAGAAGTTGCGAAGGAAA+TGG | - | chr5_2:60419320-60419339 | None:intergenic | 40.0% | |
| !! | AAGGGCAAGTTTCTGAAGTT+CGG | - | chr5_2:60419398-60419417 | None:intergenic | 40.0% |
| GTGATTGAATGTAGCCACAT+GGG | - | chr5_2:60419914-60419933 | None:intergenic | 40.0% | |
| AGTGATTGAATGTAGCCACA+TGG | - | chr5_2:60419915-60419934 | None:intergenic | 40.0% | |
| !! | TATTCATGGTGTGGTGTTGT+TGG | + | chr5_2:60419949-60419968 | Msa0779240:intron | 40.0% |
| !!! | TTTTCGATGTGGTGTTGTTG+TGG | + | chr5_2:60420013-60420032 | Msa0779240:intron | 40.0% |
| AGGCATTTAGGAATGAGCTT+GGG | + | chr5_2:60420059-60420078 | Msa0779240:CDS | 40.0% | |
| ! | GCAACAACAGTGTTGAAAAC+TGG | - | chr5_2:60420112-60420131 | None:intergenic | 40.0% |
| CCCCATAAAAAATGGTTAGC+AGG | - | chr5_2:60420214-60420233 | None:intergenic | 40.0% | |
| GAACCCTTCTCATCTTCATT+AGG | - | chr5_2:60420686-60420705 | None:intergenic | 40.0% | |
| !! | GCACAAAAAGAGCATTTCAG+AGG | - | chr5_2:60420878-60420897 | None:intergenic | 40.0% |
| ! | AAATGCTCTTTTTGTGCCAC+TGG | + | chr5_2:60420881-60420900 | Msa0779240:CDS | 40.0% |
| !! | TCTTTTTGTGCCACTGGAAA+AGG | + | chr5_2:60420887-60420906 | Msa0779240:CDS | 40.0% |
| !! | CTTTTTGTGCCACTGGAAAA+GGG | + | chr5_2:60420888-60420907 | Msa0779240:CDS | 40.0% |
| !! | TTTTTGTGCCACTGGAAAAG+GGG | + | chr5_2:60420889-60420908 | Msa0779240:CDS | 40.0% |
| TTTCTGTTTCACCACAAAGC+AGG | + | chr5_2:60421137-60421156 | Msa0779240:intron | 40.0% | |
| ! | ACTGCCTTCAGGTTTAACAT+TGG | - | chr5_2:60421254-60421273 | None:intergenic | 40.0% |
| TTAAACCTGAAGGCAGTACT+TGG | + | chr5_2:60421257-60421276 | Msa0779240:CDS | 40.0% | |
| TAAACCTGAAGGCAGTACTT+GGG | + | chr5_2:60421258-60421277 | Msa0779240:CDS | 40.0% | |
| ! | AACCTAGTTAAGAGCACAGA+TGG | - | chr5_2:60421409-60421428 | None:intergenic | 40.0% |
| !! | ACTTAAACTCTGGGACTCAT+TGG | + | chr5_2:60421438-60421457 | Msa0779240:intron | 40.0% |
| TTCTATTCTACGCGGGATTT+GGG | - | chr5_2:60421485-60421504 | None:intergenic | 40.0% | |
| TTTCTATTCTACGCGGGATT+TGG | - | chr5_2:60421486-60421505 | None:intergenic | 40.0% | |
| !! | GCTCTATTTCTATTCTACGC+GGG | - | chr5_2:60421492-60421511 | None:intergenic | 40.0% |
| !! | GGCTCTATTTCTATTCTACG+CGG | - | chr5_2:60421493-60421512 | None:intergenic | 40.0% |
| AAAACCGATCTGTAAGGTGA+GGG | - | chr5_2:60421539-60421558 | None:intergenic | 40.0% | |
| AGGTTCTCTTGCTACTGAAT+TGG | + | chr5_2:60421632-60421651 | Msa0779240:intron | 40.0% | |
| AGGTTCTCTTGCTACTGAAT+TGG | + | chr5_2:60421632-60421651 | Msa0779240:intron | 40.0% | |
| AGTGTGCTAATGTTGGATTC+TGG | + | chr5_2:60422176-60422195 | Msa0779240:intron | 40.0% | |
| TGCTAATGTTGGATTCTGGT+TGG | + | chr5_2:60422180-60422199 | Msa0779240:intron | 40.0% | |
| ! | GCTAATGTTGGATTCTGGTT+GGG | + | chr5_2:60422181-60422200 | Msa0779240:intron | 40.0% |
| ! | TATTGTATTTGGAACCCCCA+CGG | - | chr5_2:60422254-60422273 | None:intergenic | 40.0% |
| TTCAATCCACTTTAGCTGTG+AGG | + | chr5_2:60422296-60422315 | Msa0779240:intron | 40.0% | |
| CAATTACCTCACAGCTAAAG+TGG | - | chr5_2:60422305-60422324 | None:intergenic | 40.0% | |
| GACTGACAAGATCAGAATCA+AGG | - | chr5_2:60422329-60422348 | None:intergenic | 40.0% | |
| AACGAACGAAGAAATGCATG+AGG | - | chr5_2:60422391-60422410 | None:intergenic | 40.0% | |
| TCATAATCTGGTGTCTGATC+TGG | + | chr5_2:60422413-60422432 | Msa0779240:intron | 40.0% | |
| GGCTGATGGAAGATACAAAA+GGG | - | chr5_2:60422536-60422555 | None:intergenic | 40.0% | |
| AGGCTGATGGAAGATACAAA+AGG | - | chr5_2:60422537-60422556 | None:intergenic | 40.0% | |
| ATGCTCCTAACCAGAAACTA+AGG | + | chr5_2:60422559-60422578 | Msa0779240:intron | 40.0% | |
| TGCTCCTAACCAGAAACTAA+GGG | + | chr5_2:60422560-60422579 | Msa0779240:intron | 40.0% | |
| CAATTGTCTCCCTTAGTTTC+TGG | - | chr5_2:60422572-60422591 | None:intergenic | 40.0% | |
| AATGGGTAAGACTTTGCACT+TGG | - | chr5_2:60422597-60422616 | None:intergenic | 40.0% | |
| AAGTGCAAAGTCTTACCCAT+TGG | + | chr5_2:60422596-60422615 | Msa0779240:CDS | 40.0% | |
| CTTGCATAAGTGCATCCAAT+GGG | - | chr5_2:60422614-60422633 | None:intergenic | 40.0% | |
| TCTTGCATAAGTGCATCCAA+TGG | - | chr5_2:60422615-60422634 | None:intergenic | 40.0% | |
| AGCTGCTCAAACATAATGAC+AGG | - | chr5_2:60422778-60422797 | None:intergenic | 40.0% | |
| TGTCATTATGTTTGAGCAGC+TGG | + | chr5_2:60422777-60422796 | Msa0779240:intron | 40.0% | |
| CTACTACATGAATATGGCAG+TGG | + | chr5_2:60422840-60422859 | Msa0779240:CDS | 40.0% | |
| ATACTGCTTTCCTGTAAGGA+CGG | - | chr5_2:60422917-60422936 | None:intergenic | 40.0% | |
| AAGGTCCATATTTGGAAGCT+GGG | - | chr5_2:60423177-60423196 | None:intergenic | 40.0% | |
| GTAACTGCAAGGTCCATATT+TGG | - | chr5_2:60423185-60423204 | None:intergenic | 40.0% | |
| AATATGGACCTTGCAGTTAC+AGG | + | chr5_2:60423185-60423204 | Msa0779240:CDS | 40.0% | |
| CACACACAATGTCAGTTTCA+TGG | + | chr5_2:60423215-60423234 | Msa0779240:three_prime_UTR | 40.0% | |
| ATTGTAACTCAGGCAGTAAC+AGG | - | chr5_2:60423364-60423383 | None:intergenic | 40.0% | |
| TTCTTGCTAGCAGAGAAATG+TGG | + | chr5_2:60423391-60423410 | Msa0779240:three_prime_UTR | 40.0% | |
| !! | AATGTGGAGAAGCATCTATG+TGG | + | chr5_2:60423407-60423426 | Msa0779240:three_prime_UTR | 40.0% |
| ! | GCACTAATTTTGTGGTATGC+AGG | + | chr5_2:60423436-60423455 | Msa0779240:three_prime_UTR | 40.0% |
| ! | AATTTTGTGGTATGCAGGCT+TGG | + | chr5_2:60423441-60423460 | Msa0779240:three_prime_UTR | 40.0% |
| TAGATTCTTTGGCAGCTAAG+AGG | + | chr5_2:60423480-60423499 | Msa0779240:three_prime_UTR | 40.0% | |
| AGATTCTTTGGCAGCTAAGA+GGG | + | chr5_2:60423481-60423500 | Msa0779240:three_prime_UTR | 40.0% | |
| CTACCACGAGCAAATATTGT+TGG | + | chr5_2:60423540-60423559 | Msa0779240:three_prime_UTR | 40.0% | |
| TGTAGTTCATATGGTGCACT+TGG | + | chr5_2:60423582-60423601 | Msa0779240:three_prime_UTR | 40.0% | |
| GTAGTTCATATGGTGCACTT+GGG | + | chr5_2:60423583-60423602 | Msa0779240:three_prime_UTR | 40.0% | |
| ! | ACGGTCAGATTTTTACAAGC+TGG | - | chr5_2:60423668-60423687 | None:intergenic | 40.0% |
| ! | GTTAAAACACAGGCGTTGTT+TGG | + | chr5_2:60423737-60423756 | Msa0779240:three_prime_UTR | 40.0% |
| TGGAATGCACATCCTTTAAG+TGG | + | chr5_2:60423757-60423776 | Msa0779240:three_prime_UTR | 40.0% | |
| AGAAGTTGCGAAGGAAATGG+CGG | - | chr5_2:60419317-60419336 | None:intergenic | 45.0% | |
| AGGAGAAGAAGAAGTTGCGA+AGG | - | chr5_2:60419326-60419345 | None:intergenic | 45.0% | |
| TCAGGTTCTCCTTGGCTTAT+CGG | + | chr5_2:60419369-60419388 | Msa0779240:CDS | 45.0% | |
| CAGAAACTTGCCCTTGACTT+TGG | + | chr5_2:60419403-60419422 | Msa0779240:CDS | 45.0% | |
| GAAACAGACGCAAACGATAC+TGG | - | chr5_2:60419792-60419811 | None:intergenic | 45.0% | |
| AGCTCATTCCTAAATGCCTG+AGG | - | chr5_2:60420058-60420077 | None:intergenic | 45.0% | |
| CAGGCATTTAGGAATGAGCT+TGG | + | chr5_2:60420058-60420077 | Msa0779240:CDS | 45.0% | |
| GGCATTTAGGAATGAGCTTG+GGG | + | chr5_2:60420060-60420079 | Msa0779240:CDS | 45.0% | |
| AACACTGTTGTTGCAACGGA+TGG | + | chr5_2:60420118-60420137 | Msa0779240:CDS | 45.0% | |
| TGCAACGGATGGAACTGTTA+AGG | + | chr5_2:60420129-60420148 | Msa0779240:CDS | 45.0% | |
| !! | TTTTGTGCCACTGGAAAAGG+GGG | + | chr5_2:60420890-60420909 | Msa0779240:CDS | 45.0% |
| !! | GGGGCTTTTCAAGGAATCTT+CGG | + | chr5_2:60420909-60420928 | Msa0779240:CDS | 45.0% |
| GAGCCATGAAATTGTTGAGC+AGG | + | chr5_2:60420931-60420950 | Msa0779240:CDS | 45.0% | |
| AAACCTGAAGGCAGTACTTG+GGG | + | chr5_2:60421259-60421278 | Msa0779240:CDS | 45.0% | |
| GGCACACCATTGCTTGAATA+AGG | + | chr5_2:60421280-60421299 | Msa0779240:CDS | 45.0% | |
| AAACCGATCTGTAAGGTGAG+GGG | - | chr5_2:60421538-60421557 | None:intergenic | 45.0% | |
| CAAAACCGATCTGTAAGGTG+AGG | - | chr5_2:60421540-60421559 | None:intergenic | 45.0% | |
| CCTTGCAAAACCGATCTGTA+AGG | - | chr5_2:60421545-60421564 | None:intergenic | 45.0% | |
| !! | CCTTACAGATCGGTTTTGCA+AGG | + | chr5_2:60421542-60421561 | Msa0779240:intron | 45.0% |
| ! | CGGTTTTGCAAGGATGAGTT+AGG | + | chr5_2:60421552-60421571 | Msa0779240:intron | 45.0% |
| ! | ATCATCTTTTCATGCGGAGG+AGG | + | chr5_2:60421719-60421738 | Msa0779240:intron | 45.0% |
| ! | TCATCTTTTCATGCGGAGGA+GGG | + | chr5_2:60421720-60421739 | Msa0779240:intron | 45.0% |
| ! | ATTCTGGTTGGGCTTCTTGT+AGG | + | chr5_2:60422192-60422211 | Msa0779240:intron | 45.0% |
| AATGATGACTATCTCCACCG+TGG | + | chr5_2:60422234-60422253 | Msa0779240:intron | 45.0% | |
| ATGATGACTATCTCCACCGT+GGG | + | chr5_2:60422235-60422254 | Msa0779240:intron | 45.0% | |
| ! | GTCTGATCTGGTCTGATTTG+TGG | + | chr5_2:60422425-60422444 | Msa0779240:intron | 45.0% |
| !! | GTTTCTGGTTAGGAGCATGT+AGG | - | chr5_2:60422557-60422576 | None:intergenic | 45.0% |
| !! | GTCTCCCTTAGTTTCTGGTT+AGG | - | chr5_2:60422567-60422586 | None:intergenic | 45.0% |
| TGCACTTATGCAAGACTGCA+AGG | + | chr5_2:60422620-60422639 | Msa0779240:CDS | 45.0% | |
| ACTTCCGCGAAACAAGTAGA+CGG | + | chr5_2:60422646-60422665 | Msa0779240:CDS | 45.0% | |
| AAACCCGTCTACTTGTTTCG+CGG | - | chr5_2:60422653-60422672 | None:intergenic | 45.0% | |
| AGGGAGGAACAAGAATGTGT+TGG | - | chr5_2:60422710-60422729 | None:intergenic | 45.0% | |
| TTAACCTTACTGTACGAGGG+AGG | - | chr5_2:60422726-60422745 | None:intergenic | 45.0% | |
| AGCAGCTGGAATCAATGACT+CGG | + | chr5_2:60422791-60422810 | Msa0779240:intron | 45.0% | |
| CGAAACTCAGAGCCTTCTAT+TGG | - | chr5_2:60422894-60422913 | None:intergenic | 45.0% | |
| CAGATTGTAGTCAGAGTCTG+CGG | - | chr5_2:60423150-60423169 | None:intergenic | 45.0% | |
| GGAATCCCAGCTTCCAAATA+TGG | + | chr5_2:60423169-60423188 | Msa0779240:CDS | 45.0% | |
| CAAGGTCCATATTTGGAAGC+TGG | - | chr5_2:60423178-60423197 | None:intergenic | 45.0% | |
| GCAATCAACCTGTAACTGCA+AGG | - | chr5_2:60423196-60423215 | None:intergenic | 45.0% | |
| CAGCACAATTCCTCAGTCTC+AGG | + | chr5_2:60419351-60419370 | Msa0779240:CDS | 50.0% | |
| GTTCGGTTTCCGATAAGCCA+AGG | - | chr5_2:60419381-60419400 | None:intergenic | 50.0% | |
| ACTTGCCCTTGACTTTGGTC+AGG | + | chr5_2:60419408-60419427 | Msa0779240:CDS | 50.0% | |
| !! | CGTGTCGGTTGTTCAAACGT+TGG | - | chr5_2:60419712-60419731 | None:intergenic | 50.0% |
| CACACGACAATTGACCCATG+TGG | + | chr5_2:60419897-60419916 | Msa0779240:intron | 50.0% | |
| TTGCAGTGCCTCAGGCATTT+AGG | + | chr5_2:60420047-60420066 | Msa0779240:intron | 50.0% | |
| GTGATGAGACACATGCTGTC+AGG | - | chr5_2:60420715-60420734 | None:intergenic | 50.0% | |
| GACAGCATGTGTCTCATCAC+AGG | + | chr5_2:60420715-60420734 | Msa0779240:CDS | 50.0% | |
| ! | TGAAAAGCCCCCTTTTCCAG+TGG | - | chr5_2:60420900-60420919 | None:intergenic | 50.0% |
| ! | CTGGAAAAGGGGGCTTTTCA+AGG | + | chr5_2:60420900-60420919 | Msa0779240:CDS | 50.0% |
| TGAACAGGTCTTGGCCATTG+AGG | + | chr5_2:60421178-60421197 | Msa0779240:intron | 50.0% | |
| GCGTTTGAACACCTCCTCAA+TGG | - | chr5_2:60421195-60421214 | None:intergenic | 50.0% | |
| !! | TTGAGGAGGTGTTCAAACGC+AGG | + | chr5_2:60421195-60421214 | Msa0779240:CDS | 50.0% |
| !! | TGAGGAGGTGTTCAAACGCA+GGG | + | chr5_2:60421196-60421215 | Msa0779240:CDS | 50.0% |
| GGCCATCTGTGCTCTTAACT+AGG | + | chr5_2:60421404-60421423 | Msa0779240:intron | 50.0% | |
| GTACCCCTCACCTTACAGAT+CGG | + | chr5_2:60421532-60421551 | Msa0779240:intron | 50.0% | |
| AGCGTATCACGGAGCAATAG+CGG | - | chr5_2:60421971-60421990 | None:intergenic | 50.0% | |
| TGATGACTATCTCCACCGTG+GGG | + | chr5_2:60422236-60422255 | Msa0779240:intron | 50.0% | |
| ! | GTTAGGAGCATGTAGGCTGA+TGG | - | chr5_2:60422550-60422569 | None:intergenic | 50.0% |
| CTTCCGCGAAACAAGTAGAC+GGG | + | chr5_2:60422647-60422666 | Msa0779240:CDS | 50.0% | |
| TGTTCCTCCCTCGTACAGTA+AGG | + | chr5_2:60422719-60422738 | Msa0779240:intron | 50.0% | |
| !! | TCTGGTTTGGCGTACACTAG+TGG | - | chr5_2:60423066-60423085 | None:intergenic | 50.0% |
| ACTAGTGTACGCCAAACCAG+AGG | + | chr5_2:60423065-60423084 | Msa0779240:CDS | 50.0% | |
| ATGCAGCTTGTGGTCAGCTA+CGG | + | chr5_2:60423099-60423118 | Msa0779240:CDS | 50.0% | |
| CGCAGACTCTGACTACAATC+TGG | + | chr5_2:60423148-60423167 | Msa0779240:CDS | 50.0% | |
| TGAGGAATTGTGCTGCGAGG+AGG | - | chr5_2:60419346-60419365 | None:intergenic | 55.0% | |
| GACTGAGGAATTGTGCTGCG+AGG | - | chr5_2:60419349-60419368 | None:intergenic | 55.0% | |
| CCAAGGAGAACCTGAGACTG+AGG | - | chr5_2:60419364-60419383 | None:intergenic | 55.0% | |
| CCTCAGTCTCAGGTTCTCCT+TGG | + | chr5_2:60419361-60419380 | Msa0779240:CDS | 55.0% | |
| AACCGACACGACACTGACAC+AGG | + | chr5_2:60419722-60419741 | Msa0779240:intron | 55.0% | |
| CACCTGTGTCAGTGTCGTGT+CGG | - | chr5_2:60419727-60419746 | None:intergenic | 55.0% | |
| TGCTTGCATTGCAGTGCCTC+AGG | + | chr5_2:60420039-60420058 | Msa0779240:intron | 55.0% | |
| AGGAATGAGCTTGGGGAAGC+TGG | + | chr5_2:60420067-60420086 | Msa0779240:CDS | 55.0% | |
| ATGAGCTTGGGGAAGCTGGA+TGG | + | chr5_2:60420071-60420090 | Msa0779240:CDS | 55.0% | |
| AAGCTGGATGGAAGGTCGGA+CGG | + | chr5_2:60420083-60420102 | Msa0779240:CDS | 55.0% | |
| ACAGGTCTTGGCCATTGAGG+AGG | + | chr5_2:60421181-60421200 | Msa0779240:intron | 55.0% | |
| AGAGCACAGATGGCCATTGC+AGG | - | chr5_2:60421399-60421418 | None:intergenic | 55.0% | |
| TTTCATGCGGAGGAGGGACA+TGG | + | chr5_2:60421726-60421745 | Msa0779240:intron | 55.0% | |
| GATGACTATCTCCACCGTGG+GGG | + | chr5_2:60422237-60422256 | Msa0779240:intron | 55.0% | |
| ! | TGTATTTGGAACCCCCACGG+TGG | - | chr5_2:60422251-60422270 | None:intergenic | 55.0% |
| CTGAGTTTCGCCGTCCTTAC+AGG | + | chr5_2:60422904-60422923 | Msa0779240:CDS | 55.0% | |
| TGTACGCCAAACCAGAGGAC+TGG | + | chr5_2:60423070-60423089 | Msa0779240:CDS | 55.0% | |
| TTGCGTCCAGTCCTCTGGTT+TGG | - | chr5_2:60423079-60423098 | None:intergenic | 55.0% | |
| TGCATTTGCGTCCAGTCCTC+TGG | - | chr5_2:60423084-60423103 | None:intergenic | 55.0% | |
| CTGGACGCAAATGCAGCTTG+TGG | + | chr5_2:60423089-60423108 | Msa0779240:CDS | 55.0% | |
| !!! | CTGCGGCCAAAGGTGTTTTC+TGG | - | chr5_2:60423133-60423152 | None:intergenic | 55.0% |
| TAGTCAGAGTCTGCGGCCAA+AGG | - | chr5_2:60423143-60423162 | None:intergenic | 55.0% | |
| ! | GTGCGAGGGGCATGGAATAG+TGG | - | chr5_2:60419264-60419283 | None:intergenic | 60.0% |
| CGACACGACACTGACACAGG+TGG | + | chr5_2:60419725-60419744 | Msa0779240:intron | 60.0% | |
| GCTTGGGGAAGCTGGATGGA+AGG | + | chr5_2:60420075-60420094 | Msa0779240:CDS | 60.0% | |
| GGGGAAGCTGGATGGAAGGT+CGG | + | chr5_2:60420079-60420098 | Msa0779240:CDS | 60.0% | |
| ! | GTGCCCCAAGTACTGCCTTC+AGG | - | chr5_2:60421265-60421284 | None:intergenic | 60.0% |
| TTCCATGCCCCTCGCACGTG+TGG | + | chr5_2:60419267-60419286 | Msa0779240:CDS | 65.0% | |
| AGGACGCACCACACGTGCGA+GGG | - | chr5_2:60419278-60419297 | None:intergenic | 65.0% | |
| AAGGACGCACCACACGTGCG+AGG | - | chr5_2:60419279-60419298 | None:intergenic | 65.0% | |
| GAAATGGCGGCACGTGTGCG+AGG | - | chr5_2:60419304-60419323 | None:intergenic | 65.0% | |
| CACCACACGTGCGAGGGGCA+TGG | - | chr5_2:60419272-60419291 | None:intergenic | 70.0% | |
| GGACGCACCACACGTGCGAG+GGG | - | chr5_2:60419277-60419296 | None:intergenic | 70.0% | |
| GCGGCACGTGTGCGAGGTGA+AGG | - | chr5_2:60419298-60419317 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 60419213 | 60423789 | 60419213 | ID=Msa0779240;Name=Msa0779240 |
| chr5_2 | mRNA | 60419213 | 60423789 | 60419213 | ID=Msa0779240-mRNA-1;Parent=Msa0779240;Name=Msa0779240-mRNA-1;_AED=0.14;_eAED=0.14;_QI=31|0.87|0.88|1|1|1|9|578|370 |
| chr5_2 | exon | 60419213 | 60419429 | 60419213 | ID=Msa0779240-mRNA-1:exon:17702;Parent=Msa0779240-mRNA-1 |
| chr5_2 | exon | 60419541 | 60419616 | 60419541 | ID=Msa0779240-mRNA-1:exon:17703;Parent=Msa0779240-mRNA-1 |
| chr5_2 | exon | 60420053 | 60420150 | 60420053 | ID=Msa0779240-mRNA-1:exon:17704;Parent=Msa0779240-mRNA-1 |
| chr5_2 | exon | 60420635 | 60420736 | 60420635 | ID=Msa0779240-mRNA-1:exon:17705;Parent=Msa0779240-mRNA-1 |
| chr5_2 | exon | 60420866 | 60420952 | 60420866 | ID=Msa0779240-mRNA-1:exon:17706;Parent=Msa0779240-mRNA-1 |
| chr5_2 | exon | 60421185 | 60421301 | 60421185 | ID=Msa0779240-mRNA-1:exon:17707;Parent=Msa0779240-mRNA-1 |
| chr5_2 | exon | 60422573 | 60422693 | 60422573 | ID=Msa0779240-mRNA-1:exon:17708;Parent=Msa0779240-mRNA-1 |
| chr5_2 | exon | 60422796 | 60422932 | 60422796 | ID=Msa0779240-mRNA-1:exon:17709;Parent=Msa0779240-mRNA-1 |
| chr5_2 | exon | 60423023 | 60423789 | 60423023 | ID=Msa0779240-mRNA-1:exon:17710;Parent=Msa0779240-mRNA-1 |
| chr5_2 | five_prime_UTR | 60419213 | 60419243 | 60419213 | ID=Msa0779240-mRNA-1:five_prime_utr;Parent=Msa0779240-mRNA-1 |
| chr5_2 | CDS | 60419244 | 60419429 | 60419244 | ID=Msa0779240-mRNA-1:cds;Parent=Msa0779240-mRNA-1 |
| chr5_2 | CDS | 60419541 | 60419616 | 60419541 | ID=Msa0779240-mRNA-1:cds;Parent=Msa0779240-mRNA-1 |
| chr5_2 | CDS | 60420053 | 60420150 | 60420053 | ID=Msa0779240-mRNA-1:cds;Parent=Msa0779240-mRNA-1 |
| chr5_2 | CDS | 60420635 | 60420736 | 60420635 | ID=Msa0779240-mRNA-1:cds;Parent=Msa0779240-mRNA-1 |
| chr5_2 | CDS | 60420866 | 60420952 | 60420866 | ID=Msa0779240-mRNA-1:cds;Parent=Msa0779240-mRNA-1 |
| chr5_2 | CDS | 60421185 | 60421301 | 60421185 | ID=Msa0779240-mRNA-1:cds;Parent=Msa0779240-mRNA-1 |
| chr5_2 | CDS | 60422573 | 60422693 | 60422573 | ID=Msa0779240-mRNA-1:cds;Parent=Msa0779240-mRNA-1 |
| chr5_2 | CDS | 60422796 | 60422932 | 60422796 | ID=Msa0779240-mRNA-1:cds;Parent=Msa0779240-mRNA-1 |
| chr5_2 | CDS | 60423023 | 60423211 | 60423023 | ID=Msa0779240-mRNA-1:cds;Parent=Msa0779240-mRNA-1 |
| chr5_2 | three_prime_UTR | 60423212 | 60423789 | 60423212 | ID=Msa0779240-mRNA-1:three_prime_utr;Parent=Msa0779240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
