AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0737900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0737900 MtrunA17_Chr7g0276581 85.897 78 10 1 8 84 126 203 3.10e-40 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0737900 AT1G53800.1 55.128 78 34 1 8 84 131 208 6.11e-23 91.3
Msa0737900 AT1G53800.2 55.128 78 34 1 8 84 135 212 6.82e-23 90.9
Msa0737900 AT1G53800.3 55.128 78 34 1 8 84 135 212 6.82e-23 90.9
Msa0737900 AT1G53800.4 53.448 58 26 1 28 84 1 58 9.99e-14 64.7

Find 187 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGCTTTAGAAGCTAAAT+TGG 0.147902 5_1:-55432564 Msa0737900:three_prime_UTR
CCTTCTCTGTTCAGGGGACT+TGG 0.194217 5_1:+55434291 None:intergenic
ACTTGGAAGCAATGAGAATT+TGG 0.220424 5_1:-55435175 Msa0737900:exon
CAGAAGCTATTGCTGCAAAA+TGG 0.252169 5_1:-55434261 Msa0737900:three_prime_UTR
AGAAAGTGCCTTTGCTCTTA+TGG 0.256302 5_1:-55433972 Msa0737900:three_prime_UTR
ACAAGAGGCAATAAGTTCTT+TGG 0.264991 5_1:-55432985 Msa0737900:three_prime_UTR
TTAGCTCTAACTTCTCTTCC+TGG 0.274598 5_1:+55433441 None:intergenic
TTGGGTGCTCTGTTGCTAAT+TGG 0.276305 5_1:+55434310 None:intergenic
ATCCCTGTTGTACCATTATT+AGG 0.292065 5_1:+55435152 None:intergenic
GTTAGACATTGCCTAGCTTA+TGG 0.306007 5_1:+55431935 None:intergenic
AAATGGAGTTCGAAATTGTT+TGG 0.308023 5_1:-55433702 Msa0737900:three_prime_UTR
GTGCCATTACTAGGATTTCT+TGG 0.312678 5_1:-55433727 Msa0737900:intron
GGTGGAGACGCCGGTGGTTT+TGG 0.318131 5_1:-55435838 Msa0737900:five_prime_UTR
GGCAATGATCACACGGTTAC+AGG 0.319193 5_1:-55432710 Msa0737900:three_prime_UTR
TATTGCCTCTTGTAAATGTT+GGG 0.320896 5_1:+55432995 None:intergenic
GCTCCTGTTCGCACATTACT+TGG 0.341958 5_1:-55435192 Msa0737900:five_prime_UTR
GGATTTGCTTTGCTTGCATC+AGG 0.359030 5_1:-55433681 Msa0737900:three_prime_UTR
ACTAGGATTTCTTGGGGAAA+TGG 0.362003 5_1:-55433719 Msa0737900:intron
GGTCAAAGTTATACGATAAC+AGG 0.364096 5_1:-55433660 Msa0737900:three_prime_UTR
AAAATGAAGTTGACTAATCT+TGG 0.365767 5_1:-55434685 Msa0737900:CDS
AAAAGAACGTGGGAGGTTAA+AGG 0.368139 5_1:-55433420 Msa0737900:intron
CGTGGAGAGGGATTTCTTAT+CGG 0.371864 5_1:-55435811 Msa0737900:five_prime_UTR
TTGTTGATCCAAGGTTTCAT+AGG 0.374379 5_1:+55434387 None:intergenic
TTTGAGTGGAATTCAATTGC+AGG 0.377246 5_1:-55434457 Msa0737900:CDS
GTTCAGTAATGGCGAATCTA+AGG 0.381249 5_1:-55435224 Msa0737900:five_prime_UTR
TGCCATTACTAGGATTTCTT+GGG 0.383104 5_1:-55433726 Msa0737900:intron
ATGAGAATTTGGCCTAATAA+TGG 0.388821 5_1:-55435164 Msa0737900:intron
ATCTACCACTGTGCCTCTAT+TGG 0.389069 5_1:-55433058 Msa0737900:three_prime_UTR
GAGGAGTATTCGTGCTTCAT+AGG 0.389321 5_1:-55432123 Msa0737900:three_prime_UTR
CTGATTGTCATCAACAACTT+TGG 0.393912 5_1:-55431885 None:intergenic
AAAAGCTCAGATATTCAAAC+TGG 0.402189 5_1:+55435884 None:intergenic
GAATTCGCCGGTGGTGGGAT+TGG 0.402373 5_1:-55436570 Msa0737900:five_prime_UTR
GCACGAATACTCCTCGGATT+AGG 0.407455 5_1:+55432131 None:intergenic
TTGTTTCCTTTCTTCAACAC+TGG 0.416092 5_1:+55434345 None:intergenic
TTTGAAGAGACAAGTTCGTT+TGG 0.417744 5_1:-55432812 Msa0737900:three_prime_UTR
GTAATAATAGTCCTTCATTC+AGG 0.418166 5_1:-55432496 Msa0737900:three_prime_UTR
CTTCTCTGTTCAGGGGACTT+GGG 0.418289 5_1:+55434292 None:intergenic
GGATTTCTTATCGGAATTCA+AGG 0.428297 5_1:-55435802 Msa0737900:five_prime_UTR
GGGGAGTGGGAGAGAGAGAG+AGG 0.431331 5_1:-55436678 Msa0737900:five_prime_UTR
TTATTGCCTCTTGTAAATGT+TGG 0.431874 5_1:+55432994 None:intergenic
CCGGCGGTGGGAGGGAGTAC+CGG 0.434236 5_1:-55436597 Msa0737900:five_prime_UTR
GTTTCTGTTATTTCTGTAAG+TGG 0.435024 5_1:-55433933 Msa0737900:three_prime_UTR
CAGATATTCAAACTGGAAGT+TGG 0.439187 5_1:+55435891 None:intergenic
TAGTCTTTATTCAATAAAGT+AGG 0.441698 5_1:+55431987 None:intergenic
AACGGGAACGGGAGAAAGAA+GGG 0.441804 5_1:-55436753 None:intergenic
GTATGATGAGGAAGCATTAG+AGG 0.442565 5_1:-55432624 Msa0737900:three_prime_UTR
AAACGGGAACGGGAGAAAGA+AGG 0.448712 5_1:-55436754 None:intergenic
AGAAGCTATTGCTGCAAAAT+GGG 0.452125 5_1:-55434260 Msa0737900:three_prime_UTR
AAAGAAAGAACGGGAAAGGA+CGG 0.457486 5_1:-55436725 Msa0737900:five_prime_UTR
TGAGAATCGACGATTTGATA+AGG 0.461690 5_1:-55435760 Msa0737900:intron
ACTGTCAAAGTCAGAGTGTA+AGG 0.462684 5_1:+55432358 None:intergenic
CGGCGTGTCTGTGTCGTGTC+TGG 0.464799 5_1:+55432217 None:intergenic
TTAAACTTGTAAGACCATCT+AGG 0.465871 5_1:+55432931 None:intergenic
CTTCCAAGTAATGTGCGAAC+AGG 0.467841 5_1:+55435189 None:intergenic
GGAGAAGAAGTCGCCGGCGG+TGG 0.470645 5_1:-55436644 Msa0737900:five_prime_UTR
ACCGCCGGCGACTTCTTCTC+CGG 0.470880 5_1:+55436646 None:intergenic
AAGAAAGAACGGGAAAGGAC+GGG 0.471733 5_1:-55436724 Msa0737900:five_prime_UTR
CAGTGGAAGCATTGCAGTAT+CGG 0.473726 5_1:-55432670 Msa0737900:three_prime_UTR
GAGAGAGAGGGATGGAGTAC+CGG 0.474429 5_1:-55436665 Msa0737900:five_prime_UTR
GGAGAAGAATTCGCCGGTGG+TGG 0.475881 5_1:-55436576 Msa0737900:five_prime_UTR
TCTGTTGCTAATTGGTGCCC+TGG 0.476775 5_1:+55434318 None:intergenic
TCTCAAAATTCATGTAATCC+TGG 0.476841 5_1:-55435246 Msa0737900:five_prime_UTR
TATATTCGAAGAATTGCAAA+TGG 0.478969 5_1:+55433908 None:intergenic
ATCACTCATGGCTTTGTACA+TGG 0.479686 5_1:-55432782 Msa0737900:three_prime_UTR
TCGGAGAATGATGGAAGAAC+AGG 0.480951 5_1:-55432651 Msa0737900:three_prime_UTR
ACGATAACAGGAACCTATGC+AGG 0.482058 5_1:-55433648 Msa0737900:three_prime_UTR
AGGACGGGAACGAGAGAAAG+AGG 0.482649 5_1:-55436709 Msa0737900:five_prime_UTR
TCATCCCCTTCTGCCAATAG+AGG 0.488121 5_1:+55433045 None:intergenic
GCAGATAAAACATATTTGCT+TGG 0.490350 5_1:-55432434 Msa0737900:three_prime_UTR
AAGAAAGGAAACAAATGGCC+AGG 0.492152 5_1:-55434336 Msa0737900:three_prime_UTR
AACAGAATTCATTACCTCGT+TGG 0.492282 5_1:+55432867 None:intergenic
GGAGAAGAAGTAGCCGGCGG+TGG 0.497680 5_1:-55436610 Msa0737900:five_prime_UTR
AGTCTTTATTCAATAAAGTA+GGG 0.498382 5_1:+55431988 None:intergenic
CATGGCTTTGTACATGGAGT+TGG 0.501272 5_1:-55432776 Msa0737900:three_prime_UTR
TGAAGTTATGAATCAGATGT+TGG 0.505651 5_1:-55435637 Msa0737900:five_prime_UTR
GCTTCATTGAGCCTGAATGA+AGG 0.509878 5_1:+55432485 None:intergenic
AAGAAGTAGCCGGCGGTGGG+AGG 0.510660 5_1:-55436606 Msa0737900:five_prime_UTR
GTGGGATTGGATTGAAGATG+TGG 0.511366 5_1:-55436557 Msa0737900:five_prime_UTR
TCTCAAATTATTAACAGTGT+CGG 0.512179 5_1:+55432197 None:intergenic
TTGGTCAGTAAGAGCTGCAA+TGG 0.512404 5_1:-55434414 Msa0737900:exon
AGAAGATCAAAGGAGCTGTC+AGG 0.513258 5_1:-55433880 Msa0737900:three_prime_UTR
ATTCAATTGCAGGAGCATCT+AGG 0.515971 5_1:-55434447 Msa0737900:CDS
CTTGCGAAAATTCAAAGTTG+TGG 0.519735 5_1:-55435859 Msa0737900:five_prime_UTR
AAGAAGTCGCCGGCGGTGGA+AGG 0.523697 5_1:-55436640 Msa0737900:five_prime_UTR
CCGGTACTCCCTTCCACCGC+CGG 0.525002 5_1:+55436631 None:intergenic
CAACAAACAACAGTCCTAGA+TGG 0.525178 5_1:-55432945 Msa0737900:three_prime_UTR
CTGAGAAAGCAGCAGTGCAG+TGG 0.528186 5_1:-55432687 Msa0737900:three_prime_UTR
AGAAGTAGCCGGCGGTGGGA+GGG 0.529743 5_1:-55436605 Msa0737900:five_prime_UTR
CCGGCGGTGGAAGGGAGTAC+CGG 0.530768 5_1:-55436631 Msa0737900:five_prime_UTR
AGAAAGTTTGCAGAAGATGA+AGG 0.531151 5_1:-55435046 Msa0737900:CDS
ATGGAATTCCTATGAAACCT+TGG 0.531728 5_1:-55434395 Msa0737900:three_prime_UTR
ACCGCCGGCTACTTCTTCTC+CGG 0.532364 5_1:+55436612 None:intergenic
CTGTGCCTCTATTGGCAGAA+GGG 0.534725 5_1:-55433050 Msa0737900:three_prime_UTR
CATTACCTCGTTGGAGTCAG+AGG 0.535482 5_1:+55432876 None:intergenic
TGTTGAAGAAAGGAAACAAA+TGG 0.535795 5_1:-55434341 Msa0737900:three_prime_UTR
GACGAAAGAAAGAACGGGAA+AGG 0.537375 5_1:-55436729 Msa0737900:five_prime_UTR
GTGCTTAAGTTGTTGATCCA+AGG 0.538408 5_1:+55434378 None:intergenic
TGTAAGTTGCACCATAAGCT+AGG 0.541495 5_1:-55431946 Msa0737900:three_prime_UTR
ATTGCCTCTTGTAAATGTTG+GGG 0.545790 5_1:+55432996 None:intergenic
AATGAGGCGTGGAAGGAAGA+TGG 0.548441 5_1:-55434497 Msa0737900:CDS
TCTCTTCAAATTGTTTACAA+TGG 0.549100 5_1:+55432825 None:intergenic
ATTGCAGGAGCATCTAGGCC+AGG 0.550141 5_1:-55434442 Msa0737900:CDS
AAGTGCCTTTGCTCTTATGG+TGG 0.551298 5_1:-55433969 Msa0737900:three_prime_UTR
AGATTCGCCATTACTGAACC+AGG 0.551614 5_1:+55435228 None:intergenic
CCTCGCTATGCAGAATCTAA+AGG 0.552278 5_1:-55435013 Msa0737900:intron
TTTGAGAAAATCACATAAGT+CGG 0.553435 5_1:-55432181 Msa0737900:three_prime_UTR
ACGGGAACGGGAGAAAGAAG+GGG 0.555167 5_1:-55436752 None:intergenic
AAATAACAGAAACATTTATG+AGG 0.555460 5_1:+55433943 None:intergenic
AGGTTTCACATACTCTAAGT+AGG 0.556394 5_1:+55433832 None:intergenic
AATTGCTTCTGAGAATCGAC+AGG 0.559906 5_1:-55436002 Msa0737900:intron
ATGTAATCCTGGTTCAGTAA+TGG 0.561047 5_1:-55435235 Msa0737900:five_prime_UTR
TATGGGAAATGAGGCGTGGA+AGG 0.561411 5_1:-55434504 Msa0737900:CDS
AAATGAAAACTGAACATGAA+AGG 0.561852 5_1:+55433482 None:intergenic
AGAAGTCGCCGGCGGTGGAA+GGG 0.564843 5_1:-55436639 Msa0737900:five_prime_UTR
CCGGTACTCCCTCCCACCGC+CGG 0.565659 5_1:+55436597 None:intergenic
TGAGAAAGCTATGGGAAATG+AGG 0.567042 5_1:-55434513 Msa0737900:CDS
GCGTGGAAGGAAGATGGTGC+AGG 0.567129 5_1:-55434491 Msa0737900:CDS
GTCGGTATAATTATATGTGT+CGG 0.569093 5_1:-55432163 Msa0737900:three_prime_UTR
TCATAGGTTGTGTACAGTGG+TGG 0.574010 5_1:-55432107 Msa0737900:three_prime_UTR
ACCACCGGCGAATTCTTCTC+CGG 0.574099 5_1:+55436578 None:intergenic
GGACGGGAACGAGAGAAAGA+GGG 0.574597 5_1:-55436708 Msa0737900:five_prime_UTR
GAGAAGAAGTAGCCGGCGGT+GGG 0.576030 5_1:-55436609 Msa0737900:five_prime_UTR
TGCTGGAGTGAGAAAGCTAT+GGG 0.576084 5_1:-55434521 Msa0737900:CDS
CCAAGTCCCCTGAACAGAGA+AGG 0.577586 5_1:-55434291 Msa0737900:three_prime_UTR
GGTTGGCCAGTGTTGAAGAA+AGG 0.578756 5_1:-55434351 Msa0737900:three_prime_UTR
TTTGGACCGAAAATCACTCA+TGG 0.580658 5_1:-55432794 Msa0737900:three_prime_UTR
GAAGATTGCGATTTCAGAGG+TGG 0.581303 5_1:+55435581 None:intergenic
GAGAAGAATTCGCCGGTGGT+GGG 0.582133 5_1:-55436575 Msa0737900:five_prime_UTR
GTGCTGGAGTGAGAAAGCTA+TGG 0.583096 5_1:-55434522 Msa0737900:CDS
ACTGTGCCTCTATTGGCAGA+AGG 0.584005 5_1:-55433051 Msa0737900:three_prime_UTR
ACAACTTAAGCACGAGTGGT+TGG 0.584302 5_1:-55434368 Msa0737900:three_prime_UTR
CAGAGAATGCAAGTGATGGA+TGG 0.585016 5_1:-55435281 Msa0737900:five_prime_UTR
CAAAGTTGTGGTGGAGACGC+CGG 0.585149 5_1:-55435847 Msa0737900:five_prime_UTR
GGATGTTTAATAGAAGAAAG+TGG 0.585798 5_1:-55432521 Msa0737900:three_prime_UTR
TTAACCCCAACATTTACAAG+AGG 0.586501 5_1:-55433000 Msa0737900:three_prime_UTR
GCGAAAATTCAAAGTTGTGG+TGG 0.586730 5_1:-55435856 Msa0737900:five_prime_UTR
GCCATTACTAGGATTTCTTG+GGG 0.591419 5_1:-55433725 Msa0737900:intron
AAAGAAGATTGCGATTTCAG+AGG 0.594984 5_1:+55435578 None:intergenic
GGCTCAGAGAATGCAAGTGA+TGG 0.597683 5_1:-55435285 Msa0737900:five_prime_UTR
ATTGCAGTATCGGAGAATGA+TGG 0.600567 5_1:-55432660 Msa0737900:three_prime_UTR
TTCACATACTCTAAGTAGGA+AGG 0.602936 5_1:+55433836 None:intergenic
CATAACATACTTCCCTGCAT+AGG 0.604754 5_1:+55433635 None:intergenic
GACGGGAACGAGAGAAAGAG+GGG 0.609322 5_1:-55436707 Msa0737900:five_prime_UTR
CGGGAACGGGAGAAAGAAGG+GGG 0.610650 5_1:-55436751 None:intergenic
TTGTTTGTTGAATCTGAGAG+TGG 0.611353 5_1:+55432958 None:intergenic
CTTCAATCCAATCCCACCAC+CGG 0.613920 5_1:+55436563 None:intergenic
TGTGCCTCTATTGGCAGAAG+GGG 0.614205 5_1:-55433049 Msa0737900:three_prime_UTR
TGACATGCTTCTCAAAAGAG+AGG 0.614433 5_1:-55432594 Msa0737900:three_prime_UTR
ATATAAATGAAGAAGATCAA+AGG 0.618445 5_1:-55433890 Msa0737900:three_prime_UTR
ATGAAGCACGGATACGAACA+CGG 0.621255 5_1:-55432243 Msa0737900:three_prime_UTR
AGTACCGGAGAAGAAGTAGC+CGG 0.622748 5_1:-55436616 Msa0737900:five_prime_UTR
AGTTGTGGTGGAGACGCCGG+TGG 0.623438 5_1:-55435844 Msa0737900:five_prime_UTR
TCCACGTTAGCCAAAACCAC+CGG 0.626293 5_1:+55435828 None:intergenic
AGGAGAGTTGCTGCTTTGAG+TGG 0.630829 5_1:-55434471 Msa0737900:CDS
CCTTTAGATTCTGCATAGCG+AGG 0.631137 5_1:+55435013 None:intergenic
AGAAAGGAAACAAATGGCCA+GGG 0.632334 5_1:-55434335 Msa0737900:three_prime_UTR
TTCAGGCTCAATGAAGCAAG+AGG 0.636416 5_1:-55432479 Msa0737900:three_prime_UTR
CGATAACAGGAACCTATGCA+GGG 0.636873 5_1:-55433647 Msa0737900:three_prime_UTR
TATGAAGCACGAATACTCCT+CGG 0.637050 5_1:+55432125 None:intergenic
TGTTGCTGCAAACAACGCAA+TGG 0.638980 5_1:-55432731 Msa0737900:three_prime_UTR
GAGAATGATGGAAGAACAGG+CGG 0.639655 5_1:-55432648 Msa0737900:three_prime_UTR
ATCAACAACTTAAGCACGAG+TGG 0.641009 5_1:-55434372 Msa0737900:three_prime_UTR
AAGTTGTTGATGACAATCAG+AGG 0.642908 5_1:+55431888 None:intergenic
TTGTTGTGTACTATGAAGCA+CGG 0.651488 5_1:-55432255 Msa0737900:three_prime_UTR
GGAAGCCACCATAAGAGCAA+AGG 0.652426 5_1:+55433964 None:intergenic
ACGCAATGGCAATGATCACA+CGG 0.655986 5_1:-55432717 Msa0737900:three_prime_UTR
AAGCTATGGGAAATGAGGCG+TGG 0.656388 5_1:-55434508 Msa0737900:CDS
GCTCAATGAAGCAAGAGGAG+AGG 0.657394 5_1:-55432474 Msa0737900:three_prime_UTR
AGAACAGGCGGAGTATGATG+AGG 0.659983 5_1:-55432636 Msa0737900:three_prime_UTR
TAGAGCTAAAAGAACGTGGG+AGG 0.662044 5_1:-55433427 Msa0737900:three_prime_UTR
AAGTTAGAGCTAAAAGAACG+TGG 0.672311 5_1:-55433431 Msa0737900:three_prime_UTR
AGTTAGAGCTAAAAGAACGT+GGG 0.675706 5_1:-55433430 Msa0737900:three_prime_UTR
ACCGGAGAAGAAGTCGCCGG+CGG 0.678350 5_1:-55436647 Msa0737900:five_prime_UTR
AGTACCGGAGAAGAAGTCGC+CGG 0.680845 5_1:-55436650 Msa0737900:five_prime_UTR
GCTTCATAGGTTGTGTACAG+TGG 0.684369 5_1:-55432110 Msa0737900:three_prime_UTR
AGTACCGGAGAAGAATTCGC+CGG 0.686001 5_1:-55436582 Msa0737900:five_prime_UTR
AAGTGATGGATGGTATCCTC+CGG 0.690440 5_1:-55435271 Msa0737900:five_prime_UTR
ACCGGAGAAGAATTCGCCGG+TGG 0.693766 5_1:-55436579 Msa0737900:five_prime_UTR
GGTGTCAGACACCTAATCCG+AGG 0.702396 5_1:-55432142 Msa0737900:three_prime_UTR
ACCGGAGAAGAAGTAGCCGG+CGG 0.708693 5_1:-55436613 Msa0737900:five_prime_UTR
GATGATCTAACAGAGGTGTG+TGG 0.712310 5_1:-55433531 Msa0737900:three_prime_UTR
GAAGGGGATGATATAAACGA+CGG 0.720618 5_1:-55433033 Msa0737900:three_prime_UTR
TGTTTAATAGAAGAAAGTGG+TGG 0.722197 5_1:-55432518 Msa0737900:three_prime_UTR
TTCTGCCAATAGAGGCACAG+TGG 0.725506 5_1:+55433053 None:intergenic
TTTGCCGGATGATCTAACAG+AGG 0.743477 5_1:-55433538 Msa0737900:intron
ACGGGAACGAGAGAAAGAGG+GGG 0.747070 5_1:-55436706 Msa0737900:five_prime_UTR
ATTTGCCTCTGACTCCAACG+AGG 0.753481 5_1:-55432881 Msa0737900:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATTATTAGATTAG+AGG + chr5_1:55433556-55433575 None:intergenic 10.0%
!! AGAATCCAAAAAAAAAAAAA+CGG + chr5_1:55432269-55432288 None:intergenic 15.0%
!! ATAGAAATTATGATAAATAG+AGG - chr5_1:55433210-55433229 Msa0737900:intron 15.0%
!! TAGAAATTATGATAAATAGA+GGG - chr5_1:55433211-55433230 Msa0737900:intron 15.0%
!! ATCTATTCTTAAATCTTAAA+AGG - chr5_1:55433672-55433691 Msa0737900:three_prime_UTR 15.0%
!! ATATAGGAAAAATAAAATAG+AGG - chr5_1:55433852-55433871 Msa0737900:three_prime_UTR 15.0%
!! TATAGGAAAAATAAAATAGA+GGG - chr5_1:55433853-55433872 Msa0737900:three_prime_UTR 15.0%
!! AGATTTAAAAGTAAGAAAAA+TGG + chr5_1:55434008-55434027 None:intergenic 15.0%
!! TAAAAGATTAAATGTTTATG+AGG + chr5_1:55435466-55435485 None:intergenic 15.0%
!!! TGCATTTTGTGTTTTATTTT+TGG - chr5_1:55432205-55432224 Msa0737900:three_prime_UTR 20.0%
!! GAATCCAAAAAAAAAAAAAC+GGG + chr5_1:55432268-55432287 None:intergenic 20.0%
!!! TTTTTTTTTTTGGATTCTGA+TGG - chr5_1:55432271-55432290 Msa0737900:three_prime_UTR 20.0%
!!! TTTTTTTTTTGGATTCTGAT+GGG - chr5_1:55432272-55432291 Msa0737900:three_prime_UTR 20.0%
!!! AGGTTTTAATTTTTCAGTTT+TGG - chr5_1:55432337-55432356 Msa0737900:three_prime_UTR 20.0%
!! TAATTAACTTCAAAAAGAGT+AGG + chr5_1:55432558-55432577 None:intergenic 20.0%
!! CAATTAGTTAACACAATAAA+AGG + chr5_1:55432699-55432718 None:intergenic 20.0%
!! TTTGTTCTTGTGTTTATTTA+TGG - chr5_1:55432918-55432937 Msa0737900:three_prime_UTR 20.0%
!!! TTAAAGGTAGCATTAAATTT+TGG - chr5_1:55433077-55433096 Msa0737900:three_prime_UTR 20.0%
!! AAATAACAGAAACATTTATG+AGG + chr5_1:55434693-55434712 None:intergenic 20.0%
!! ATATAAATGAAGAAGATCAA+AGG - chr5_1:55434743-55434762 Msa0737900:intron 20.0%
!!! AGATTCAAAGTTTTAAACTT+AGG - chr5_1:55435408-55435427 Msa0737900:intron 20.0%
!! ATGAGGTTTGTATATTAATA+TGG + chr5_1:55435449-55435468 None:intergenic 20.0%
!!! TTTTCTATATGTATATAGTG+AGG - chr5_1:55435541-55435560 Msa0737900:intron 20.0%
!! TTTCTATATGTATATAGTGA+GGG - chr5_1:55435542-55435561 Msa0737900:intron 20.0%
!!! GAGTTTTATAGAAACAAATA+TGG - chr5_1:55436091-55436110 Msa0737900:intron 20.0%
!! AGTCTTTATTCAATAAAGTA+GGG + chr5_1:55436648-55436667 None:intergenic 20.0%
!! TAGTCTTTATTCAATAAAGT+AGG + chr5_1:55436649-55436668 None:intergenic 20.0%
!!! CTTTCCCGTTTTTTTTTTTT+TGG - chr5_1:55432261-55432280 Msa0737900:three_prime_UTR 25.0%
!!! TTTTTTTTTGGATTCTGATG+GGG - chr5_1:55432273-55432292 Msa0737900:three_prime_UTR 25.0%
!! AATCTGTTAGTTTGATCTTA+AGG - chr5_1:55432317-55432336 Msa0737900:three_prime_UTR 25.0%
!!! TTTTGTTGTTTGGTAATTCT+GGG - chr5_1:55432419-55432438 Msa0737900:three_prime_UTR 25.0%
!! AAGATGTTATTTATTCCCTA+AGG - chr5_1:55432486-55432505 Msa0737900:three_prime_UTR 25.0%
!!! TTTCATTTCAGGAGTTTTTT+TGG - chr5_1:55432608-55432627 Msa0737900:three_prime_UTR 25.0%
!! AATTGAGATTGTGTTTGTTT+TGG - chr5_1:55432954-55432973 Msa0737900:three_prime_UTR 25.0%
! AAAAATCATCAGAAACATCA+GGG + chr5_1:55433030-55433049 None:intergenic 25.0%
!! AAATCGCAATCTTCTTTTAA+AGG - chr5_1:55433061-55433080 Msa0737900:three_prime_UTR 25.0%
!!! TAGCATTAAATTTTGGTATC+TGG - chr5_1:55433084-55433103 Msa0737900:intron 25.0%
!! TCTATGATTGTAGATTTTTC+TGG - chr5_1:55433313-55433332 Msa0737900:intron 25.0%
!! CTATGATTGTAGATTTTTCT+GGG - chr5_1:55433314-55433333 Msa0737900:intron 25.0%
! TTATTAGATTAGAGGTAGAA+TGG + chr5_1:55433548-55433567 None:intergenic 25.0%
! TCTTAAATCTTAAAAGGATG+AGG - chr5_1:55433678-55433697 Msa0737900:three_prime_UTR 25.0%
! TATGAGTAAAAGATGAAAAC+AGG + chr5_1:55433723-55433742 None:intergenic 25.0%
! AAAATGAAGTTGACTAATCT+TGG - chr5_1:55433948-55433967 Msa0737900:three_prime_UTR 25.0%
! AAAAGTAAGAAAAATGGTGA+TGG + chr5_1:55434002-55434021 None:intergenic 25.0%
! ATGTTAACATATACACTTAC+GGG + chr5_1:55434404-55434423 None:intergenic 25.0%
! GATGTTAACATATACACTTA+CGG + chr5_1:55434405-55434424 None:intergenic 25.0%
!! ATTTAGCAATTTTCTTTGAC+AGG - chr5_1:55434616-55434635 Msa0737900:intron 25.0%
! TATATTCGAAGAATTGCAAA+TGG + chr5_1:55434728-55434747 None:intergenic 25.0%
! TTACAATATACACAAGTAAC+AGG + chr5_1:55434824-55434843 None:intergenic 25.0%
! TTCAAAGTGTACACAAAATA+CGG + chr5_1:55435051-55435070 None:intergenic 25.0%
! AAATGAAAACTGAACATGAA+AGG + chr5_1:55435154-55435173 None:intergenic 25.0%
! TTTGGAAATAAAGACAACAT+TGG + chr5_1:55435286-55435305 None:intergenic 25.0%
!!! CTGTTGACTTTAATAAGAAT+TGG - chr5_1:55435354-55435373 Msa0737900:intron 25.0%
!!! TCAAAGTTTTAAACTTAGGT+AGG - chr5_1:55435412-55435431 Msa0737900:intron 25.0%
!!! ATCTTTTAATTTTCTGAGTG+TGG - chr5_1:55435478-55435497 Msa0737900:intron 25.0%
!! GCAAATTTTGTCTTTTCTAA+TGG + chr5_1:55435738-55435757 None:intergenic 25.0%
! TCTCTTCAAATTGTTTACAA+TGG + chr5_1:55435811-55435830 None:intergenic 25.0%
! TCTCAAATTATTAACAGTGT+CGG + chr5_1:55436439-55436458 None:intergenic 25.0%
! TTTGAGAAAATCACATAAGT+CGG - chr5_1:55436452-55436471 Msa0737900:intron 25.0%
TTCTTCTTCTTCTTCATCAA+AGG - chr5_1:55432122-55432141 Msa0737900:three_prime_UTR 30.0%
ACAAACCCTTAATATGCAAT+CGG + chr5_1:55432240-55432259 None:intergenic 30.0%
! CATCTATGTGTGCAAAATTT+TGG - chr5_1:55432389-55432408 Msa0737900:three_prime_UTR 30.0%
!!! TGGTTTTTGCTTTTGTTGTT+TGG - chr5_1:55432409-55432428 Msa0737900:three_prime_UTR 30.0%
!!! CTTTTGTTGTTTGGTAATTC+TGG - chr5_1:55432418-55432437 Msa0737900:three_prime_UTR 30.0%
!!! ATTGGTTTGTTTGGTGATTT+TGG - chr5_1:55432445-55432464 Msa0737900:three_prime_UTR 30.0%
!!! TTGGTTTGTTTGGTGATTTT+GGG - chr5_1:55432446-55432465 Msa0737900:three_prime_UTR 30.0%
!! TTTTGGGTGCAAAATTTTTC+AGG - chr5_1:55432462-55432481 Msa0737900:three_prime_UTR 30.0%
!!! TATCATCTTGGCATGTTTTT+TGG - chr5_1:55432510-55432529 Msa0737900:three_prime_UTR 30.0%
AAAAGCTCAGATATTCAAAC+TGG + chr5_1:55432752-55432771 None:intergenic 30.0%
!!! GATTGTGTTTGTTTTGGTTT+AGG - chr5_1:55432960-55432979 Msa0737900:three_prime_UTR 30.0%
TGAAGTTATGAATCAGATGT+TGG - chr5_1:55432996-55433015 Msa0737900:three_prime_UTR 30.0%
GAAAAATCATCAGAAACATC+AGG + chr5_1:55433031-55433050 None:intergenic 30.0%
! TTTTTCTGGGTTTGTGTTTT+TGG - chr5_1:55433327-55433346 Msa0737900:intron 30.0%
!!! TTACATGAATTTTGAGACAC+CGG + chr5_1:55433384-55433403 None:intergenic 30.0%
TCTCAAAATTCATGTAATCC+TGG - chr5_1:55433387-55433406 Msa0737900:intron 30.0%
ATGAGAATTTGGCCTAATAA+TGG - chr5_1:55433469-55433488 Msa0737900:three_prime_UTR 30.0%
TAATGGCGAATCAATAATTC+TGG + chr5_1:55433508-55433527 None:intergenic 30.0%
CAAACTTGGACATAGAATAA+TGG + chr5_1:55433525-55433544 None:intergenic 30.0%
AAACTCAAACTCAAACTACT+TGG + chr5_1:55433811-55433830 None:intergenic 30.0%
! TAGTTTGAGTTTGAGTTTGA+GGG - chr5_1:55433813-55433832 Msa0737900:intron 30.0%
! ATGATAGGAAAGGATTTGTT+AGG + chr5_1:55433921-55433940 None:intergenic 30.0%
!! TAAGAAAAATGGTGATGGAA+AGG + chr5_1:55433997-55434016 None:intergenic 30.0%
ATAAAGAAGGAGATTGTATG+GGG + chr5_1:55434057-55434076 None:intergenic 30.0%
CATAAAGAAGGAGATTGTAT+GGG + chr5_1:55434058-55434077 None:intergenic 30.0%
TACTGTACAATCCATAAAGA+AGG + chr5_1:55434070-55434089 None:intergenic 30.0%
ACAAAAATGAAGATTAGTGC+TGG - chr5_1:55434095-55434114 Msa0737900:intron 30.0%
TGTTGAAGAAAGGAAACAAA+TGG - chr5_1:55434292-55434311 Msa0737900:three_prime_UTR 30.0%
ATGTTAACATCTTGAGTGTT+TGG - chr5_1:55434414-55434433 Msa0737900:exon 30.0%
!! TCTGTCATTGACTTTAAAGA+AGG - chr5_1:55434486-55434505 Msa0737900:CDS 30.0%
TGTCATAAGTGTGTAAATTG+TGG - chr5_1:55434572-55434591 Msa0737900:intron 30.0%
!! GTTTCTGTTATTTCTGTAAG+TGG - chr5_1:55434700-55434719 Msa0737900:intron 30.0%
! ATTTACAGTTGTTATTCGCA+AGG - chr5_1:55434849-55434868 Msa0737900:intron 30.0%
! TTTACAGTTGTTATTCGCAA+GGG - chr5_1:55434850-55434869 Msa0737900:intron 30.0%
AAATGGAGTTCGAAATTGTT+TGG - chr5_1:55434931-55434950 Msa0737900:intron 30.0%
ATCTTTGATGTTTCATTTGC+CGG - chr5_1:55435080-55435099 Msa0737900:intron 30.0%
!! TTCACACATAATTTTGATCC+AGG - chr5_1:55435174-55435193 Msa0737900:exon 30.0%
ATAAAGACAACATTGGACAA+TGG + chr5_1:55435279-55435298 None:intergenic 30.0%
GCATCTTAATCTTCTAACTA+TGG - chr5_1:55435500-55435519 Msa0737900:intron 30.0%
TATTGCCTCTTGTAAATGTT+GGG + chr5_1:55435641-55435660 None:intergenic 30.0%
TTATTGCCTCTTGTAAATGT+TGG + chr5_1:55435642-55435661 None:intergenic 30.0%
TTAAACTTGTAAGACCATCT+AGG + chr5_1:55435705-55435724 None:intergenic 30.0%
!! TAGAGCTTTAGAAGCTAAAT+TGG - chr5_1:55436069-55436088 Msa0737900:intron 30.0%
GGATGTTTAATAGAAGAAAG+TGG - chr5_1:55436112-55436131 Msa0737900:intron 30.0%
TGTTTAATAGAAGAAAGTGG+TGG - chr5_1:55436115-55436134 Msa0737900:intron 30.0%
GTAATAATAGTCCTTCATTC+AGG - chr5_1:55436137-55436156 Msa0737900:intron 30.0%
GCAGATAAAACATATTTGCT+TGG - chr5_1:55436199-55436218 Msa0737900:intron 30.0%
! AGATCACACTTTTCAGAAAA+TGG - chr5_1:55436244-55436263 Msa0737900:intron 30.0%
GTCGGTATAATTATATGTGT+CGG - chr5_1:55436470-55436489 Msa0737900:intron 30.0%
TGTCATCCGATTGCATATTA+AGG - chr5_1:55432231-55432250 Msa0737900:three_prime_UTR 35.0%
GTCATCCGATTGCATATTAA+GGG - chr5_1:55432232-55432251 Msa0737900:three_prime_UTR 35.0%
ATTCCCTAAGGTTATCATCT+TGG - chr5_1:55432498-55432517 Msa0737900:three_prime_UTR 35.0%
ATGCCAAGATGATAACCTTA+GGG + chr5_1:55432504-55432523 None:intergenic 35.0%
!! CAATCGCTTTGTTTCATTTC+AGG - chr5_1:55432597-55432616 Msa0737900:three_prime_UTR 35.0%
CAGATATTCAAACTGGAAGT+TGG + chr5_1:55432745-55432764 None:intergenic 35.0%
CTTGCGAAAATTCAAAGTTG+TGG - chr5_1:55432774-55432793 Msa0737900:three_prime_UTR 35.0%
GGATTTCTTATCGGAATTCA+AGG - chr5_1:55432831-55432850 Msa0737900:three_prime_UTR 35.0%
TGAGAATCGACGATTTGATA+AGG - chr5_1:55432873-55432892 Msa0737900:three_prime_UTR 35.0%
AAAGAAGATTGCGATTTCAG+AGG + chr5_1:55433058-55433077 None:intergenic 35.0%
ATGTAATCCTGGTTCAGTAA+TGG - chr5_1:55433398-55433417 Msa0737900:intron 35.0%
ACTTGGAAGCAATGAGAATT+TGG - chr5_1:55433458-55433477 Msa0737900:three_prime_UTR 35.0%
ATCCCTGTTGTACCATTATT+AGG + chr5_1:55433484-55433503 None:intergenic 35.0%
! TGCAAACTTTCTGGTGAAAT+AGG + chr5_1:55433579-55433598 None:intergenic 35.0%
TTCATCTTCTGCAAACTTTC+TGG + chr5_1:55433588-55433607 None:intergenic 35.0%
AGAAAGTTTGCAGAAGATGA+AGG - chr5_1:55433587-55433606 Msa0737900:intron 35.0%
ATCTTAAAAGGATGAGGACA+TGG - chr5_1:55433684-55433703 Msa0737900:three_prime_UTR 35.0%
GAGTAAAAGATGAAAACAGG+AGG + chr5_1:55433720-55433739 None:intergenic 35.0%
! GTAGTTTGAGTTTGAGTTTG+AGG - chr5_1:55433812-55433831 Msa0737900:intron 35.0%
! AGTTTGAGTTTGAGTTTGAG+GGG - chr5_1:55433814-55433833 Msa0737900:intron 35.0%
GGGTATCATGCATGATATAT+AGG - chr5_1:55433836-55433855 Msa0737900:intron 35.0%
!! TTCATTTTGACCTGCATGAT+AGG + chr5_1:55433936-55433955 None:intergenic 35.0%
CCATAAAGAAGGAGATTGTA+TGG + chr5_1:55434059-55434078 None:intergenic 35.0%
CCATACAATCTCCTTCTTTA+TGG - chr5_1:55434056-55434075 Msa0737900:intron 35.0%
TTTGAGTGGAATTCAATTGC+AGG - chr5_1:55434176-55434195 Msa0737900:intron 35.0%
ATGGAATTCCTATGAAACCT+TGG - chr5_1:55434238-55434257 Msa0737900:intron 35.0%
TTGTTGATCCAAGGTTTCAT+AGG + chr5_1:55434249-55434268 None:intergenic 35.0%
TTGTTTCCTTTCTTCAACAC+TGG + chr5_1:55434291-55434310 None:intergenic 35.0%
! AATTTTCCTTCTCTGTTCAG+GGG + chr5_1:55434351-55434370 None:intergenic 35.0%
! CAATTTTCCTTCTCTGTTCA+GGG + chr5_1:55434352-55434371 None:intergenic 35.0%
AGAAGCTATTGCTGCAAAAT+GGG - chr5_1:55434373-55434392 Msa0737900:three_prime_UTR 35.0%
! TAGCAATTTTCTTTGACAGG+AGG - chr5_1:55434619-55434638 Msa0737900:intron 35.0%
TTCACATACTCTAAGTAGGA+AGG + chr5_1:55434800-55434819 None:intergenic 35.0%
AGGTTTCACATACTCTAAGT+AGG + chr5_1:55434804-55434823 None:intergenic 35.0%
! TTACAGTTGTTATTCGCAAG+GGG - chr5_1:55434851-55434870 Msa0737900:intron 35.0%
TGCCATTACTAGGATTTCTT+GGG - chr5_1:55434907-55434926 Msa0737900:intron 35.0%
GGTCAAAGTTATACGATAAC+AGG - chr5_1:55434973-55434992 Msa0737900:intron 35.0%
AAGTTAGAGCTAAAAGAACG+TGG - chr5_1:55435202-55435221 Msa0737900:five_prime_UTR 35.0%
AGTTAGAGCTAAAAGAACGT+GGG - chr5_1:55435203-55435222 Msa0737900:five_prime_UTR 35.0%
AAGCAAAATCTCTCAGCATT+TGG + chr5_1:55435304-55435323 None:intergenic 35.0%
TTAACCCCAACATTTACAAG+AGG - chr5_1:55435633-55435652 Msa0737900:five_prime_UTR 35.0%
ATTGCCTCTTGTAAATGTTG+GGG + chr5_1:55435640-55435659 None:intergenic 35.0%
ACAAGAGGCAATAAGTTCTT+TGG - chr5_1:55435648-55435667 Msa0737900:five_prime_UTR 35.0%
! TTGTTTGTTGAATCTGAGAG+TGG + chr5_1:55435678-55435697 None:intergenic 35.0%
AACAGAATTCATTACCTCGT+TGG + chr5_1:55435769-55435788 None:intergenic 35.0%
TTTGAAGAGACAAGTTCGTT+TGG - chr5_1:55435821-55435840 Msa0737900:five_prime_UTR 35.0%
! ACAAAGCCATGAGTGATTTT+CGG + chr5_1:55435848-55435867 None:intergenic 35.0%
TTGTTGTGTACTATGAAGCA+CGG - chr5_1:55436378-55436397 Msa0737900:intron 35.0%
!! AAGTTGTTGATGACAATCAG+AGG + chr5_1:55436748-55436767 None:intergenic 35.0%
AAAGAAAGAACGGGAAAGGA+CGG - chr5_1:55431908-55431927 Msa0737900:three_prime_UTR 40.0%
! TGTTGTTTGGTAATTCTGGG+TGG - chr5_1:55432422-55432441 Msa0737900:three_prime_UTR 40.0%
! TTTGGTAATTCTGGGTGGAT+TGG - chr5_1:55432427-55432446 Msa0737900:three_prime_UTR 40.0%
CATGCCAAGATGATAACCTT+AGG + chr5_1:55432505-55432524 None:intergenic 40.0%
! AATTGCTTCTGAGAATCGAC+AGG - chr5_1:55432631-55432650 Msa0737900:three_prime_UTR 40.0%
GCGAAAATTCAAAGTTGTGG+TGG - chr5_1:55432777-55432796 Msa0737900:three_prime_UTR 40.0%
TAGATCACAAACAGACGCAT+TGG + chr5_1:55433281-55433300 None:intergenic 40.0%
GTTCAGTAATGGCGAATCTA+AGG - chr5_1:55433409-55433428 Msa0737900:intron 40.0%
TGGCCTAATAATGGTACAAC+AGG - chr5_1:55433478-55433497 Msa0737900:three_prime_UTR 40.0%
GGCCTAATAATGGTACAACA+GGG - chr5_1:55433479-55433498 Msa0737900:three_prime_UTR 40.0%
TAGAGGTAGAATGGCAAACT+TGG + chr5_1:55433539-55433558 None:intergenic 40.0%
! GTTTGAGTTTGAGTTTGAGG+GGG - chr5_1:55433815-55433834 Msa0737900:intron 40.0%
! TTTGAGTTTGAGTTTGAGGG+GGG - chr5_1:55433816-55433835 Msa0737900:intron 40.0%
GAAGAATGTATCAGCTGTGT+TGG + chr5_1:55433885-55433904 None:intergenic 40.0%
CAAATCCTTTCCTATCATGC+AGG - chr5_1:55433923-55433942 Msa0737900:three_prime_UTR 40.0%
TTTGACCTGCATGATAGGAA+AGG + chr5_1:55433931-55433950 None:intergenic 40.0%
AGGAGATTGTATGGGGTAAA+AGG + chr5_1:55434050-55434069 None:intergenic 40.0%
TGAGAAAGCTATGGGAAATG+AGG - chr5_1:55434120-55434139 Msa0737900:intron 40.0%
!! ATTCAATTGCAGGAGCATCT+AGG - chr5_1:55434186-55434205 Msa0737900:intron 40.0%
TCTTACTGACCAAAAAAGCC+TGG + chr5_1:55434212-55434231 None:intergenic 40.0%
! GTGCTTAAGTTGTTGATCCA+AGG + chr5_1:55434258-55434277 None:intergenic 40.0%
ATCAACAACTTAAGCACGAG+TGG - chr5_1:55434261-55434280 Msa0737900:three_prime_UTR 40.0%
AAGAAAGGAAACAAATGGCC+AGG - chr5_1:55434297-55434316 Msa0737900:three_prime_UTR 40.0%
AGAAAGGAAACAAATGGCCA+GGG - chr5_1:55434298-55434317 Msa0737900:three_prime_UTR 40.0%
! GCAATTTTCCTTCTCTGTTC+AGG + chr5_1:55434353-55434372 None:intergenic 40.0%
CAGAAGCTATTGCTGCAAAA+TGG - chr5_1:55434372-55434391 Msa0737900:three_prime_UTR 40.0%
!! AGAAAGTGCCTTTGCTCTTA+TGG - chr5_1:55434661-55434680 Msa0737900:intron 40.0%
! GTGCCATTACTAGGATTTCT+TGG - chr5_1:55434906-55434925 Msa0737900:intron 40.0%
GCCATTACTAGGATTTCTTG+GGG - chr5_1:55434908-55434927 Msa0737900:intron 40.0%
TCCCCAAGAAATCCTAGTAA+TGG + chr5_1:55434912-55434931 None:intergenic 40.0%
ACTAGGATTTCTTGGGGAAA+TGG - chr5_1:55434914-55434933 Msa0737900:intron 40.0%
CATAACATACTTCCCTGCAT+AGG + chr5_1:55435001-55435020 None:intergenic 40.0%
!! TTAGCTCTAACTTCTCTTCC+TGG + chr5_1:55435195-55435214 None:intergenic 40.0%
AAAAGAACGTGGGAGGTTAA+AGG - chr5_1:55435213-55435232 Msa0737900:five_prime_UTR 40.0%
GAAGGGGATGATATAAACGA+CGG - chr5_1:55435600-55435619 Msa0737900:five_prime_UTR 40.0%
CAACAAACAACAGTCCTAGA+TGG - chr5_1:55435688-55435707 Msa0737900:intron 40.0%
TTTGGACCGAAAATCACTCA+TGG - chr5_1:55435839-55435858 Msa0737900:five_prime_UTR 40.0%
!! ATCACTCATGGCTTTGTACA+TGG - chr5_1:55435851-55435870 Msa0737900:five_prime_UTR 40.0%
! ATTGCAGTATCGGAGAATGA+TGG - chr5_1:55435973-55435992 Msa0737900:intron 40.0%
!! GTATGATGAGGAAGCATTAG+AGG - chr5_1:55436009-55436028 Msa0737900:five_prime_UTR 40.0%
TGACATGCTTCTCAAAAGAG+AGG - chr5_1:55436039-55436058 Msa0737900:intron 40.0%
ACTGTCAAAGTCAGAGTGTA+AGG + chr5_1:55436278-55436297 None:intergenic 40.0%
TATGAAGCACGAATACTCCT+CGG + chr5_1:55436511-55436530 None:intergenic 40.0%
TGTAAGTTGCACCATAAGCT+AGG - chr5_1:55436687-55436706 Msa0737900:five_prime_UTR 40.0%
GTTAGACATTGCCTAGCTTA+TGG + chr5_1:55436701-55436720 None:intergenic 40.0%
AAGGGGGACGAAAGAAAGAA+CGG - chr5_1:55431898-55431917 Msa0737900:three_prime_UTR 45.0%
GACGAAAGAAAGAACGGGAA+AGG - chr5_1:55431904-55431923 Msa0737900:three_prime_UTR 45.0%
AAGAAAGAACGGGAAAGGAC+GGG - chr5_1:55431909-55431928 Msa0737900:three_prime_UTR 45.0%
GTGGGATTGGATTGAAGATG+TGG - chr5_1:55432076-55432095 Msa0737900:three_prime_UTR 45.0%
!! TCTGGGTGGATTGGTTTGTT+TGG - chr5_1:55432436-55432455 Msa0737900:three_prime_UTR 45.0%
CGTGGAGAGGGATTTCTTAT+CGG - chr5_1:55432822-55432841 Msa0737900:three_prime_UTR 45.0%
GAAGATTGCGATTTCAGAGG+TGG + chr5_1:55433055-55433074 None:intergenic 45.0%
! CAGAGAATGCAAGTGATGGA+TGG - chr5_1:55433352-55433371 Msa0737900:intron 45.0%
!! AAGTGATGGATGGTATCCTC+CGG - chr5_1:55433362-55433381 Msa0737900:intron 45.0%
!!! CATGAATTTTGAGACACCGG+AGG + chr5_1:55433381-55433400 None:intergenic 45.0%
AGATTCGCCATTACTGAACC+AGG + chr5_1:55433408-55433427 None:intergenic 45.0%
CTTCCAAGTAATGTGCGAAC+AGG + chr5_1:55433447-55433466 None:intergenic 45.0%
CCTTTAGATTCTGCATAGCG+AGG + chr5_1:55433623-55433642 None:intergenic 45.0%
CCTCGCTATGCAGAATCTAA+AGG - chr5_1:55433620-55433639 Msa0737900:intron 45.0%
TGCTGGAGTGAGAAAGCTAT+GGG - chr5_1:55434112-55434131 Msa0737900:intron 45.0%
TTGGTCAGTAAGAGCTGCAA+TGG - chr5_1:55434219-55434238 Msa0737900:intron 45.0%
ACAACTTAAGCACGAGTGGT+TGG - chr5_1:55434265-55434284 Msa0737900:three_prime_UTR 45.0%
TTGGGTGCTCTGTTGCTAAT+TGG + chr5_1:55434326-55434345 None:intergenic 45.0%
AAGTGCCTTTGCTCTTATGG+TGG - chr5_1:55434664-55434683 Msa0737900:intron 45.0%
AGAAGATCAAAGGAGCTGTC+AGG - chr5_1:55434753-55434772 Msa0737900:intron 45.0%
! TTCTGACACGTGCCATTACT+AGG - chr5_1:55434897-55434916 Msa0737900:intron 45.0%
! GGATTTGCTTTGCTTGCATC+AGG - chr5_1:55434952-55434971 Msa0737900:intron 45.0%
ACGATAACAGGAACCTATGC+AGG - chr5_1:55434985-55435004 Msa0737900:intron 45.0%
CGATAACAGGAACCTATGCA+GGG - chr5_1:55434986-55435005 Msa0737900:intron 45.0%
! TGCAGGGAAGTATGTTATGC+AGG - chr5_1:55435002-55435021 Msa0737900:intron 45.0%
TTTGCCGGATGATCTAACAG+AGG - chr5_1:55435095-55435114 Msa0737900:intron 45.0%
CACACCTCTGTTAGATCATC+CGG + chr5_1:55435102-55435121 None:intergenic 45.0%
! GATGATCTAACAGAGGTGTG+TGG - chr5_1:55435102-55435121 Msa0737900:intron 45.0%
TAGAGCTAAAAGAACGTGGG+AGG - chr5_1:55435206-55435225 Msa0737900:five_prime_UTR 45.0%
ATCTACCACTGTGCCTCTAT+TGG - chr5_1:55435575-55435594 Msa0737900:five_prime_UTR 45.0%
!! CATGGCTTTGTACATGGAGT+TGG - chr5_1:55435857-55435876 Msa0737900:five_prime_UTR 45.0%
TGTTGCTGCAAACAACGCAA+TGG - chr5_1:55435902-55435921 Msa0737900:intron 45.0%
ACGCAATGGCAATGATCACA+CGG - chr5_1:55435916-55435935 Msa0737900:intron 45.0%
!! CAGTGGAAGCATTGCAGTAT+CGG - chr5_1:55435963-55435982 Msa0737900:intron 45.0%
! TCGGAGAATGATGGAAGAAC+AGG - chr5_1:55435982-55436001 Msa0737900:intron 45.0%
! GAGAATGATGGAAGAACAGG+CGG - chr5_1:55435985-55436004 Msa0737900:intron 45.0%
GCTTCATTGAGCCTGAATGA+AGG + chr5_1:55436151-55436170 None:intergenic 45.0%
TTCAGGCTCAATGAAGCAAG+AGG - chr5_1:55436154-55436173 Msa0737900:intron 45.0%
ATGAAGCACGGATACGAACA+CGG - chr5_1:55436390-55436409 Msa0737900:intron 45.0%
!! GAGGAGTATTCGTGCTTCAT+AGG - chr5_1:55436510-55436529 Msa0737900:intron 45.0%
GCTTCATAGGTTGTGTACAG+TGG - chr5_1:55436523-55436542 Msa0737900:five_prime_UTR 45.0%
TCATAGGTTGTGTACAGTGG+TGG - chr5_1:55436526-55436545 Msa0737900:five_prime_UTR 45.0%
!!! TTTTTAATATAAATTTTACA+TGG - chr5_1:55436551-55436570 Msa0737900:five_prime_UTR 5.0%
AGGGGGACGAAAGAAAGAAC+GGG - chr5_1:55431899-55431918 Msa0737900:three_prime_UTR 50.0%
! AGTACCGGAGAAGAAGTAGC+CGG - chr5_1:55432017-55432036 Msa0737900:three_prime_UTR 50.0%
! AGTACCGGAGAAGAATTCGC+CGG - chr5_1:55432051-55432070 Msa0737900:three_prime_UTR 50.0%
CTTCAATCCAATCCCACCAC+CGG + chr5_1:55432073-55432092 None:intergenic 50.0%
TCCACGTTAGCCAAAACCAC+CGG + chr5_1:55432808-55432827 None:intergenic 50.0%
!!! TGGTTTTGGCTAACGTGGAG+AGG - chr5_1:55432809-55432828 Msa0737900:three_prime_UTR 50.0%
!!! GGTTTTGGCTAACGTGGAGA+GGG - chr5_1:55432810-55432829 Msa0737900:three_prime_UTR 50.0%
GGCTCAGAGAATGCAAGTGA+TGG - chr5_1:55433348-55433367 Msa0737900:intron 50.0%
GCTCCTGTTCGCACATTACT+TGG - chr5_1:55433441-55433460 Msa0737900:three_prime_UTR 50.0%
GTGCTGGAGTGAGAAAGCTA+TGG - chr5_1:55434111-55434130 Msa0737900:intron 50.0%
AAGCTATGGGAAATGAGGCG+TGG - chr5_1:55434125-55434144 Msa0737900:intron 50.0%
TATGGGAAATGAGGCGTGGA+AGG - chr5_1:55434129-55434148 Msa0737900:intron 50.0%
AATGAGGCGTGGAAGGAAGA+TGG - chr5_1:55434136-55434155 Msa0737900:intron 50.0%
!! AGGAGAGTTGCTGCTTTGAG+TGG - chr5_1:55434162-55434181 Msa0737900:intron 50.0%
!!! GCATCTAGGCCAGGCTTTTT+TGG - chr5_1:55434200-55434219 Msa0737900:intron 50.0%
! GGTTGGCCAGTGTTGAAGAA+AGG - chr5_1:55434282-55434301 Msa0737900:three_prime_UTR 50.0%
! TCTGTTGCTAATTGGTGCCC+TGG + chr5_1:55434318-55434337 None:intergenic 50.0%
CTTCTCTGTTCAGGGGACTT+GGG + chr5_1:55434344-55434363 None:intergenic 50.0%
GGAAGCCACCATAAGAGCAA+AGG + chr5_1:55434672-55434691 None:intergenic 50.0%
! TTCTGCCAATAGAGGCACAG+TGG + chr5_1:55435583-55435602 None:intergenic 50.0%
ACTGTGCCTCTATTGGCAGA+AGG - chr5_1:55435582-55435601 Msa0737900:five_prime_UTR 50.0%
CTGTGCCTCTATTGGCAGAA+GGG - chr5_1:55435583-55435602 Msa0737900:five_prime_UTR 50.0%
TGTGCCTCTATTGGCAGAAG+GGG - chr5_1:55435584-55435603 Msa0737900:five_prime_UTR 50.0%
TCATCCCCTTCTGCCAATAG+AGG + chr5_1:55435591-55435610 None:intergenic 50.0%
ATTTGCCTCTGACTCCAACG+AGG - chr5_1:55435752-55435771 Msa0737900:intron 50.0%
CATTACCTCGTTGGAGTCAG+AGG + chr5_1:55435760-55435779 None:intergenic 50.0%
GGCAATGATCACACGGTTAC+AGG - chr5_1:55435923-55435942 Msa0737900:intron 50.0%
AGAACAGGCGGAGTATGATG+AGG - chr5_1:55435997-55436016 Msa0737900:intron 50.0%
GCTCAATGAAGCAAGAGGAG+AGG - chr5_1:55436159-55436178 Msa0737900:intron 50.0%
GCACGAATACTCCTCGGATT+AGG + chr5_1:55436505-55436524 None:intergenic 50.0%
AGGACGGGAACGAGAGAAAG+AGG - chr5_1:55431924-55431943 Msa0737900:three_prime_UTR 55.0%
GGACGGGAACGAGAGAAAGA+GGG - chr5_1:55431925-55431944 Msa0737900:three_prime_UTR 55.0%
GACGGGAACGAGAGAAAGAG+GGG - chr5_1:55431926-55431945 Msa0737900:three_prime_UTR 55.0%
ACGGGAACGAGAGAAAGAGG+GGG - chr5_1:55431927-55431946 Msa0737900:three_prime_UTR 55.0%
ACGAGAGAAAGAGGGGGTTG+AGG - chr5_1:55431933-55431952 Msa0737900:three_prime_UTR 55.0%
CGAGAGAAAGAGGGGGTTGA+GGG - chr5_1:55431934-55431953 Msa0737900:three_prime_UTR 55.0%
GAGAGAAAGAGGGGGTTGAG+GGG - chr5_1:55431935-55431954 Msa0737900:three_prime_UTR 55.0%
AGAGAAAGAGGGGGTTGAGG+GGG - chr5_1:55431936-55431955 Msa0737900:three_prime_UTR 55.0%
GAGAGAGAGGGATGGAGTAC+CGG - chr5_1:55431968-55431987 Msa0737900:three_prime_UTR 55.0%
! AGTACCGGAGAAGAAGTCGC+CGG - chr5_1:55431983-55432002 Msa0737900:three_prime_UTR 55.0%
ACCACCGGCGAATTCTTCTC+CGG + chr5_1:55432058-55432077 None:intergenic 55.0%
GAGAAGAATTCGCCGGTGGT+GGG - chr5_1:55432058-55432077 Msa0737900:three_prime_UTR 55.0%
! CAAAGTTGTGGTGGAGACGC+CGG - chr5_1:55432786-55432805 Msa0737900:three_prime_UTR 55.0%
!! ATTGCAGGAGCATCTAGGCC+AGG - chr5_1:55434191-55434210 Msa0737900:intron 55.0%
CCTTCTCTGTTCAGGGGACT+TGG + chr5_1:55434345-55434364 None:intergenic 55.0%
CCAAGTCCCCTGAACAGAGA+AGG - chr5_1:55434342-55434361 Msa0737900:three_prime_UTR 55.0%
CTGAGAAAGCAGCAGTGCAG+TGG - chr5_1:55435946-55435965 Msa0737900:intron 55.0%
GGTGTCAGACACCTAATCCG+AGG - chr5_1:55436491-55436510 Msa0737900:intron 55.0%
GGGAGTGGGAGAGAGAGAGA+GGG - chr5_1:55431956-55431975 Msa0737900:three_prime_UTR 60.0%
GTGGGAGAGAGAGAGAGGGA+TGG - chr5_1:55431960-55431979 Msa0737900:three_prime_UTR 60.0%
ACCGGAGAAGAAGTAGCCGG+CGG - chr5_1:55432020-55432039 Msa0737900:three_prime_UTR 60.0%
! ACCGCCGGCTACTTCTTCTC+CGG + chr5_1:55432024-55432043 None:intergenic 60.0%
GAGAAGAAGTAGCCGGCGGT+GGG - chr5_1:55432024-55432043 Msa0737900:three_prime_UTR 60.0%
ACCGGAGAAGAATTCGCCGG+TGG - chr5_1:55432054-55432073 Msa0737900:three_prime_UTR 60.0%
GGAGAAGAATTCGCCGGTGG+TGG - chr5_1:55432057-55432076 Msa0737900:three_prime_UTR 60.0%
!! GAATTCGCCGGTGGTGGGAT+TGG - chr5_1:55432063-55432082 Msa0737900:three_prime_UTR 60.0%
!!! GCCGGTGGTTTTGGCTAACG+TGG - chr5_1:55432804-55432823 Msa0737900:three_prime_UTR 60.0%
GCGTGGAAGGAAGATGGTGC+AGG - chr5_1:55434142-55434161 Msa0737900:intron 60.0%
AAGAGGGGGTTGAGGGGGAG+TGG - chr5_1:55431941-55431960 Msa0737900:three_prime_UTR 65.0%
AGAGGGGGTTGAGGGGGAGT+GGG - chr5_1:55431942-55431961 Msa0737900:three_prime_UTR 65.0%
GGGGAGTGGGAGAGAGAGAG+AGG - chr5_1:55431955-55431974 Msa0737900:three_prime_UTR 65.0%
ACCGGAGAAGAAGTCGCCGG+CGG - chr5_1:55431986-55432005 Msa0737900:three_prime_UTR 65.0%
ACCGCCGGCGACTTCTTCTC+CGG + chr5_1:55431990-55432009 None:intergenic 65.0%
AAGAAGTCGCCGGCGGTGGA+AGG - chr5_1:55431993-55432012 Msa0737900:three_prime_UTR 65.0%
AGAAGTCGCCGGCGGTGGAA+GGG - chr5_1:55431994-55432013 Msa0737900:three_prime_UTR 65.0%
GGAGAAGAAGTAGCCGGCGG+TGG - chr5_1:55432023-55432042 Msa0737900:three_prime_UTR 65.0%
AAGAAGTAGCCGGCGGTGGG+AGG - chr5_1:55432027-55432046 Msa0737900:three_prime_UTR 65.0%
AGAAGTAGCCGGCGGTGGGA+GGG - chr5_1:55432028-55432047 Msa0737900:three_prime_UTR 65.0%
! AGTTGTGGTGGAGACGCCGG+TGG - chr5_1:55432789-55432808 Msa0737900:three_prime_UTR 65.0%
! GGTGGAGACGCCGGTGGTTT+TGG - chr5_1:55432795-55432814 Msa0737900:three_prime_UTR 65.0%
CGGCGTGTCTGTGTCGTGTC+TGG + chr5_1:55436419-55436438 None:intergenic 65.0%
GGAGAAGAAGTCGCCGGCGG+TGG - chr5_1:55431989-55432008 Msa0737900:three_prime_UTR 70.0%
CCGGTACTCCCTTCCACCGC+CGG + chr5_1:55432005-55432024 None:intergenic 70.0%
! CCGGCGGTGGAAGGGAGTAC+CGG - chr5_1:55432002-55432021 Msa0737900:three_prime_UTR 70.0%
CCGGTACTCCCTCCCACCGC+CGG + chr5_1:55432039-55432058 None:intergenic 75.0%
! CCGGCGGTGGGAGGGAGTAC+CGG - chr5_1:55432036-55432055 Msa0737900:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 55431886 55436769 55431886 ID=Msa0737900;Name=Msa0737900
chr5_1 mRNA 55431886 55436769 55431886 ID=Msa0737900-mRNA-1;Parent=Msa0737900;Name=Msa0737900-mRNA-1;_AED=0.09;_eAED=0.09;_QI=693|1|1|1|0.41|0.30|13|1825|84
chr5_1 exon 55431886 55433096 55431886 ID=Msa0737900-mRNA-1:exon:15673;Parent=Msa0737900-mRNA-1
chr5_1 exon 55433226 55433261 55433226 ID=Msa0737900-mRNA-1:exon:15672;Parent=Msa0737900-mRNA-1
chr5_1 exon 55433421 55433552 55433421 ID=Msa0737900-mRNA-1:exon:15671;Parent=Msa0737900-mRNA-1
chr5_1 exon 55433638 55433736 55433638 ID=Msa0737900-mRNA-1:exon:15670;Parent=Msa0737900-mRNA-1
chr5_1 exon 55433845 55434017 55433845 ID=Msa0737900-mRNA-1:exon:15669;Parent=Msa0737900-mRNA-1
chr5_1 exon 55434252 55434567 55434252 ID=Msa0737900-mRNA-1:exon:15668;Parent=Msa0737900-mRNA-1
chr5_1 exon 55434673 55434710 55434673 ID=Msa0737900-mRNA-1:exon:15667;Parent=Msa0737900-mRNA-1
chr5_1 exon 55435014 55435066 55435014 ID=Msa0737900-mRNA-1:exon:15666;Parent=Msa0737900-mRNA-1
chr5_1 exon 55435165 55435329 55435165 ID=Msa0737900-mRNA-1:exon:15665;Parent=Msa0737900-mRNA-1
chr5_1 exon 55435573 55435673 55435573 ID=Msa0737900-mRNA-1:exon:15664;Parent=Msa0737900-mRNA-1
chr5_1 exon 55435761 55435917 55435761 ID=Msa0737900-mRNA-1:exon:15663;Parent=Msa0737900-mRNA-1
chr5_1 exon 55436003 55436036 55436003 ID=Msa0737900-mRNA-1:exon:15662;Parent=Msa0737900-mRNA-1
chr5_1 exon 55436512 55436769 55436512 ID=Msa0737900-mRNA-1:exon:15661;Parent=Msa0737900-mRNA-1
chr5_1 five_prime_UTR 55436512 55436769 55436512 ID=Msa0737900-mRNA-1:five_prime_utr;Parent=Msa0737900-mRNA-1
chr5_1 five_prime_UTR 55436003 55436036 55436003 ID=Msa0737900-mRNA-1:five_prime_utr;Parent=Msa0737900-mRNA-1
chr5_1 five_prime_UTR 55435761 55435917 55435761 ID=Msa0737900-mRNA-1:five_prime_utr;Parent=Msa0737900-mRNA-1
chr5_1 five_prime_UTR 55435573 55435673 55435573 ID=Msa0737900-mRNA-1:five_prime_utr;Parent=Msa0737900-mRNA-1
chr5_1 five_prime_UTR 55435187 55435329 55435187 ID=Msa0737900-mRNA-1:five_prime_utr;Parent=Msa0737900-mRNA-1
chr5_1 CDS 55435165 55435186 55435165 ID=Msa0737900-mRNA-1:cds;Parent=Msa0737900-mRNA-1
chr5_1 CDS 55435014 55435066 55435014 ID=Msa0737900-mRNA-1:cds;Parent=Msa0737900-mRNA-1
chr5_1 CDS 55434673 55434710 55434673 ID=Msa0737900-mRNA-1:cds;Parent=Msa0737900-mRNA-1
chr5_1 CDS 55434426 55434567 55434426 ID=Msa0737900-mRNA-1:cds;Parent=Msa0737900-mRNA-1
chr5_1 three_prime_UTR 55434252 55434425 55434252 ID=Msa0737900-mRNA-1:three_prime_utr;Parent=Msa0737900-mRNA-1
chr5_1 three_prime_UTR 55433845 55434017 55433845 ID=Msa0737900-mRNA-1:three_prime_utr;Parent=Msa0737900-mRNA-1
chr5_1 three_prime_UTR 55433638 55433736 55433638 ID=Msa0737900-mRNA-1:three_prime_utr;Parent=Msa0737900-mRNA-1
chr5_1 three_prime_UTR 55433421 55433552 55433421 ID=Msa0737900-mRNA-1:three_prime_utr;Parent=Msa0737900-mRNA-1
chr5_1 three_prime_UTR 55433226 55433261 55433226 ID=Msa0737900-mRNA-1:three_prime_utr;Parent=Msa0737900-mRNA-1
chr5_1 three_prime_UTR 55431886 55433096 55431886 ID=Msa0737900-mRNA-1:three_prime_utr;Parent=Msa0737900-mRNA-1
Gene Sequence

>Msa0737900

ATGAGAATTTGGCCTAATAATGAAAGTTTGCAGAAGATGAAGGAAAGAACACGCCTCGCTATGCAGAATCTAAAGGTCAAAATGAAGTTGACTAATCTTGGACATGCTCAAACTACAGAAACAAAAATGAAGATTAGTGCTGGAGTGAGAAAGCTATGGGAAATGAGGCGTGGAAGGAAGATGGTGCAGGAGAGTTGCTGCTTTGAGTGGAATTCAATTGCAGGAGCATCTAGGCCAGGCTTTTTTGGTCAGTAA
Protein sequence

>Msa0737900

MRIWPNNESLQKMKERTRLAMQNLKVKMKLTNLGHAQTTETKMKISAGVRKLWEMRRGRKMVQESCCFEWNSIAGASRPGFFGQ*