AlfalfaGEDB | Msa1183350

M. sativa cultivar zhongmu-4 / Msa1183350

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0125050	Msa1183350	0.802230	6.192351e-49	-8.615850e-47
Msa0219100	Msa1183350	0.888138	7.703191e-73	-8.615850e-47
Msa0482180	Msa1183350	0.802501	5.445428e-49	-8.615850e-47
Msa0737900	Msa1183350	0.841796	3.823274e-58	-8.615850e-47
Msa0895760	Msa1183350	0.838786	2.338495e-57	-8.615850e-47
Msa1105500	Msa1183350	0.811726	6.060180e-51	-8.615850e-47
Msa1183350	Msa1288510	0.876536	1.291928e-68	-8.615850e-47
Msa1183350	Msa1371240	0.801185	1.014616e-48	-8.615850e-47
Msa1183350	Msa1391750	0.815744	7.901527e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1183350	MtrunA17_Chr4g0059611	87.500	32	4	0	46	77	297	328	1.64e-12	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 183 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACGTGGGAGGTTAA+AGG	0.368139	8_1:-18589013	Msa1183350:intron
AAAAGCTCAGATATTCAAAC+TGG	0.402189	8_1:+18591553	None:intergenic
AAAATGAAGTTGACTAATCT+TGG	0.365767	8_1:-18590354	Msa1183350:three_prime_UTR
AAACGGGAACGGGAGAAAGA+AGG	0.448712	8_1:-18592419	Msa1183350:five_prime_UTR
AAAGAAAGAACGGGAGAGGA+CGG	0.454380	8_1:-18592390	Msa1183350:five_prime_UTR
AAATAACAGAAACATTTATG+AGG	0.555460	8_1:+18589612	None:intergenic
AAATGAAAACTGAACATGAA+AGG	0.561852	8_1:+18589150	None:intergenic
AAATGGAGTTCGAAATTGTT+TGG	0.308023	8_1:-18589371	Msa1183350:three_prime_UTR
AACAGAATTCATTACCTCGT+TGG	0.492282	8_1:+18588460	None:intergenic
AACGGGAACGGGAGAAAGAA+GGG	0.441804	8_1:-18592418	Msa1183350:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTTCTTCTTCTTCATCAA+AGG	-	chr8_1:18587716-18587735	Msa1183350:three_prime_UTR	30.0%
ACAAACCCTTAATATGCAAT+CGG	+	chr8_1:18587834-18587853	None:intergenic	30.0%
AAAAGCTCAGATATTCAAAC+TGG	+	chr8_1:18588345-18588364	None:intergenic	30.0%
TGAAGTTATGAATCAGATGT+TGG	-	chr8_1:18588589-18588608	Msa1183350:three_prime_UTR	30.0%
GAAAAATCATCAGAAACATC+AGG	+	chr8_1:18588624-18588643	None:intergenic	30.0%
ATGAGAATTTGGCCTAATAA+TGG	-	chr8_1:18589062-18589081	Msa1183350:intron	30.0%
TAATGGCGAATCAATAATTC+TGG	+	chr8_1:18589101-18589120	None:intergenic	30.0%
CAAACTTGGACATAGAATAA+TGG	+	chr8_1:18589118-18589137	None:intergenic	30.0%
AAACTCAAACTCAAACTACT+TGG	+	chr8_1:18589404-18589423	None:intergenic	30.0%
ATAAAGAAGGAGATTGTATG+GGG	+	chr8_1:18589650-18589669	None:intergenic	30.0%

Showing 1 to 10 of 331 entries

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	18587479	18592438	18587479	ID=Msa1183350;Name=Msa1183350
chr8_1	mRNA	18587479	18592438	18587479	ID=Msa1183350-mRNA-1;Parent=Msa1183350;Name=Msa1183350-mRNA-1;_AED=0.07;_eAED=0.07;_QI=227\|0.90\|0.91\|1\|0.45\|0.58\|12\|2159\|88
chr8_1	exon	18587479	18588689	18587479	ID=Msa1183350-mRNA-1:exon:7165;Parent=Msa1183350-mRNA-1
chr8_1	exon	18588819	18588854	18588819	ID=Msa1183350-mRNA-1:exon:7164;Parent=Msa1183350-mRNA-1
chr8_1	exon	18589014	18589044	18589014	ID=Msa1183350-mRNA-1:exon:7163;Parent=Msa1183350-mRNA-1
chr8_1	exon	18589120	18589405	18589120	ID=Msa1183350-mRNA-1:exon:7162;Parent=Msa1183350-mRNA-1
chr8_1	exon	18589514	18589686	18589514	ID=Msa1183350-mRNA-1:exon:7161;Parent=Msa1183350-mRNA-1
chr8_1	exon	18589921	18590236	18589921	ID=Msa1183350-mRNA-1:exon:7160;Parent=Msa1183350-mRNA-1
chr8_1	exon	18590342	18590379	18590342	ID=Msa1183350-mRNA-1:exon:7159;Parent=Msa1183350-mRNA-1
chr8_1	exon	18590673	18590735	18590673	ID=Msa1183350-mRNA-1:exon:7158;Parent=Msa1183350-mRNA-1
chr8_1	exon	18590834	18590969	18590834	ID=Msa1183350-mRNA-1:exon:7157;Parent=Msa1183350-mRNA-1
chr8_1	exon	18591517	18591586	18591517	ID=Msa1183350-mRNA-1:exon:7156;Parent=Msa1183350-mRNA-1
chr8_1	exon	18591672	18591705	18591672	ID=Msa1183350-mRNA-1:exon:7155;Parent=Msa1183350-mRNA-1
chr8_1	exon	18592180	18592438	18592180	ID=Msa1183350-mRNA-1:exon:7154;Parent=Msa1183350-mRNA-1
chr8_1	five_prime_UTR	18592212	18592438	18592212	ID=Msa1183350-mRNA-1:five_prime_utr;Parent=Msa1183350-mRNA-1
chr8_1	CDS	18592180	18592211	18592180	ID=Msa1183350-mRNA-1:cds;Parent=Msa1183350-mRNA-1
chr8_1	CDS	18591672	18591705	18591672	ID=Msa1183350-mRNA-1:cds;Parent=Msa1183350-mRNA-1
chr8_1	CDS	18591517	18591586	18591517	ID=Msa1183350-mRNA-1:cds;Parent=Msa1183350-mRNA-1
chr8_1	CDS	18590839	18590969	18590839	ID=Msa1183350-mRNA-1:cds;Parent=Msa1183350-mRNA-1
chr8_1	three_prime_UTR	18590834	18590838	18590834	ID=Msa1183350-mRNA-1:three_prime_utr;Parent=Msa1183350-mRNA-1
chr8_1	three_prime_UTR	18590673	18590735	18590673	ID=Msa1183350-mRNA-1:three_prime_utr;Parent=Msa1183350-mRNA-1
chr8_1	three_prime_UTR	18590342	18590379	18590342	ID=Msa1183350-mRNA-1:three_prime_utr;Parent=Msa1183350-mRNA-1
chr8_1	three_prime_UTR	18589921	18590236	18589921	ID=Msa1183350-mRNA-1:three_prime_utr;Parent=Msa1183350-mRNA-1
chr8_1	three_prime_UTR	18589514	18589686	18589514	ID=Msa1183350-mRNA-1:three_prime_utr;Parent=Msa1183350-mRNA-1
chr8_1	three_prime_UTR	18589120	18589405	18589120	ID=Msa1183350-mRNA-1:three_prime_utr;Parent=Msa1183350-mRNA-1
chr8_1	three_prime_UTR	18589014	18589044	18589014	ID=Msa1183350-mRNA-1:three_prime_utr;Parent=Msa1183350-mRNA-1
chr8_1	three_prime_UTR	18588819	18588854	18588819	ID=Msa1183350-mRNA-1:three_prime_utr;Parent=Msa1183350-mRNA-1
chr8_1	three_prime_UTR	18587479	18588689	18587479	ID=Msa1183350-mRNA-1:three_prime_utr;Parent=Msa1183350-mRNA-1

Gene Sequence	>Msa1183350 ATGTTTGTTCTTCTTCTTCTTCTTCATCAAAGGAGTTTTTTTGGGATTGCTTCTGAGAATCGACAGACTTCCAACTTCCAGTTTGAATATCTGAGCTTTTATCTTGCGGAAATTCAAAGCTGTGGTGGAGACGCAGAGAATGCAAGTGATGGATGGTATCCTCCGGTGTCTCAAAATTTATGTAATCCTGGTTCAGTAATGGCGAATCTAAGGACGAGATCAGCTCATGTTCGCACATTACTTGGAAGCAATGAGAATTTGGCCTAA
Protein sequence	>Msa1183350 MFVLLLLLHQRSFFGIASENRQTSNFQFEYLSFYLAEIQSCGGDAENASDGWYPPVSQNLCNPGSVMANLRTRSAHVRTLLGSNENLA*