AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0895760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0895760 MtrunA17_Chr4g0059611 93.750 32 2 0 46 77 297 328 1.83e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 184 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGCTTTAGAAGCTAAAT+TGG 0.147902 6_1:+84248195 Msa0895760:three_prime_UTR
CCTTCTCTGTTCAGGGGACT+TGG 0.194217 6_1:-84246396 None:intergenic
ACTTGGAAGCAATGAGAATT+TGG 0.220424 6_1:+84245513 Msa0895760:CDS
CAGAAGCTATTGCTGCAAAA+TGG 0.252169 6_1:+84246426 Msa0895760:three_prime_UTR
AGAAAGTGCCTTTGCTCTTA+TGG 0.256302 6_1:+84246715 Msa0895760:three_prime_UTR
ACAAGAGGCAATAAGTTCTT+TGG 0.264991 6_1:+84247774 Msa0895760:three_prime_UTR
TTGGGTGCTCTGTTGCTAAT+TGG 0.276305 6_1:-84246377 None:intergenic
ATCCCTGTTGTACCATTATT+AGG 0.292065 6_1:-84245536 None:intergenic
GTTAGACATTGCCTAGCTTA+TGG 0.306007 6_1:-84248824 None:intergenic
AAATGGAGTTCGAAATTGTT+TGG 0.308023 6_1:+84246985 Msa0895760:three_prime_UTR
GAGGCTCTAACTTCTCTTCC+TGG 0.309690 6_1:-84247246 None:intergenic
GTGCCATTACTAGGATTTCT+TGG 0.312678 6_1:+84246960 Msa0895760:intron
GGCAATGATCACACGGTTAC+AGG 0.319193 6_1:+84248049 Msa0895760:three_prime_UTR
TATTGCCTCTTGTAAATGTT+GGG 0.320896 6_1:-84247764 None:intergenic
GCTCCTGTTCGCACATTACT+TGG 0.341958 6_1:+84245496 Msa0895760:CDS
TGCTTACATGACATCACCTT+TGG 0.354544 6_1:-84245690 None:intergenic
GGATTTGCTTTGCTTGCATC+AGG 0.359030 6_1:+84247006 Msa0895760:three_prime_UTR
ACTAGGATTTCTTGGGGAAA+TGG 0.362003 6_1:+84246968 Msa0895760:intron
GGTCAAAGTTATACGATAAC+AGG 0.364096 6_1:+84247027 Msa0895760:three_prime_UTR
AAAATGAAGTTGACTAATCT+TGG 0.365767 6_1:+84246002 Msa0895760:three_prime_UTR
AAAAGAACGTGGGAGGTTAA+AGG 0.368139 6_1:+84247340 Msa0895760:three_prime_UTR
TTGTTGATCCAAGGTTTCAT+AGG 0.374379 6_1:-84246300 None:intergenic
TTTGAGTGGAATTCAATTGC+AGG 0.377246 6_1:+84246230 Msa0895760:three_prime_UTR
GTTCAGTAATGGCGAATCTA+AGG 0.381249 6_1:+84245464 Msa0895760:CDS
TGCCATTACTAGGATTTCTT+GGG 0.383104 6_1:+84246961 Msa0895760:intron
ATGAGAATTTGGCCTAATAA+TGG 0.388821 6_1:+84245524 Msa0895760:exon
ATCTACCACTGTGCCTCTAT+TGG 0.389069 6_1:+84247701 Msa0895760:three_prime_UTR
GAGGAGTATTCGTGCTTCAT+AGG 0.389321 6_1:+84248636 Msa0895760:three_prime_UTR
CTGATTGTCATCAACAACTT+TGG 0.393912 6_1:+84248874 Msa0895760:three_prime_UTR
AAAAGCTCAGATATTCAAAC+TGG 0.402189 6_1:-84244804 None:intergenic
GAATTCGCCGGTGGTGGGAT+TGG 0.406400 6_1:+84244123 Msa0895760:five_prime_UTR
GCACGAATACTCCTCGGATT+AGG 0.407455 6_1:-84248628 None:intergenic
TTGTTTCCTTTCTTCAACAC+TGG 0.416092 6_1:-84246342 None:intergenic
TTTGAAGAGACAAGTTCGTT+TGG 0.417744 6_1:+84247947 Msa0895760:three_prime_UTR
GTAATAATAGTCCTTCATTC+AGG 0.418166 6_1:+84248263 Msa0895760:three_prime_UTR
CTTCTCTGTTCAGGGGACTT+GGG 0.418289 6_1:-84246395 None:intergenic
GGGGAGTGGGAGAGAGAGAG+AGG 0.431331 6_1:+84244015 Msa0895760:five_prime_UTR
TTATTGCCTCTTGTAAATGT+TGG 0.431874 6_1:-84247765 None:intergenic
CCGGCGGTGGGAGGGAGTAC+CGG 0.434236 6_1:+84244096 Msa0895760:five_prime_UTR
GTTTCTGTTATTTCTGTAAG+TGG 0.435024 6_1:+84246754 Msa0895760:three_prime_UTR
CAGATATTCAAACTGGAAGT+TGG 0.439187 6_1:-84244797 None:intergenic
TAGTCTTTATTCAATAAAGT+AGG 0.441698 6_1:-84248772 None:intergenic
AACGGGAACGGGAGAAAGAA+GGG 0.441804 6_1:+84243940 None:intergenic
GTATGATGAGGAAGCATTAG+AGG 0.442565 6_1:+84248135 Msa0895760:three_prime_UTR
AAACGGGAACGGGAGAAAGA+AGG 0.448712 6_1:+84243939 None:intergenic
CACACCTCTGTTAGATCATC+CGG 0.451013 6_1:-84247153 None:intergenic
AGAAGCTATTGCTGCAAAAT+GGG 0.452125 6_1:+84246427 Msa0895760:three_prime_UTR
AGGACGGGAACGAGAGAAAG+AGG 0.452815 6_1:+84243984 Msa0895760:five_prime_UTR
AAAGAAAGAACGGGAGAGGA+CGG 0.454380 6_1:+84243968 Msa0895760:five_prime_UTR
ACTGTCAAAGTCAGAGTGTA+AGG 0.455652 6_1:-84248401 None:intergenic
CGGCGTGTCTGTGTCGTGTC+TGG 0.464799 6_1:-84248542 None:intergenic
TTAAACTTGTAAGACCATCT+AGG 0.465871 6_1:-84247828 None:intergenic
TTCAAAGTGTACACAAAATA+CGG 0.467354 6_1:-84247101 None:intergenic
CTTCCAAGTAATGTGCGAAC+AGG 0.467841 6_1:-84245499 None:intergenic
GGAGAAGAAGTCGCCGGCGG+TGG 0.470645 6_1:+84244049 Msa0895760:five_prime_UTR
ACCGCCGGCGACTTCTTCTC+CGG 0.470880 6_1:-84244047 None:intergenic
AAGAAAGAACGGGAGAGGAC+GGG 0.471733 6_1:+84243969 Msa0895760:five_prime_UTR
GAGAGAGAGGGATGGAGTAC+CGG 0.474429 6_1:+84244028 Msa0895760:five_prime_UTR
GGAGAAGAATTCGCCGGTGG+TGG 0.475881 6_1:+84244117 Msa0895760:five_prime_UTR
TCTGTTGCTAATTGGTGCCC+TGG 0.476775 6_1:-84246369 None:intergenic
TCTCAAAATTCATGTAATCC+TGG 0.476841 6_1:+84245442 Msa0895760:CDS
TCAGAGAATGATGGAAGAAC+AGG 0.478655 6_1:+84248108 Msa0895760:three_prime_UTR
TATATTCGAAGAATTGCAAA+TGG 0.478969 6_1:-84246779 None:intergenic
ATCACTCATGGCTTTGTACA+TGG 0.479686 6_1:+84247977 Msa0895760:three_prime_UTR
ACGATAACAGGAACCTATGC+AGG 0.482058 6_1:+84247039 Msa0895760:three_prime_UTR
AGGGAGAGAGAAACGGGAAC+GGG 0.484162 6_1:+84243929 None:intergenic
TCATCCCCTTCTGCCAATAG+AGG 0.488121 6_1:-84247714 None:intergenic
GCAGATAAAACATATTTGCT+TGG 0.490350 6_1:+84248325 Msa0895760:three_prime_UTR
AAGAAAGGAAACAAATGGCC+AGG 0.492152 6_1:+84246351 Msa0895760:three_prime_UTR
AACAGAATTCATTACCTCGT+TGG 0.492282 6_1:-84247892 None:intergenic
GGAGAAGAAGTAGCCGGCGG+TGG 0.497680 6_1:+84244083 Msa0895760:five_prime_UTR
AGTCTTTATTCAATAAAGTA+GGG 0.498382 6_1:-84248771 None:intergenic
CATGGCTTTGTACATGGAGT+TGG 0.501272 6_1:+84247983 Msa0895760:three_prime_UTR
TGCAGGGAAGTATGTTATGC+AGG 0.502136 6_1:+84247056 Msa0895760:three_prime_UTR
CTGCTTAAGTTGTTGATCCA+AGG 0.502608 6_1:-84246309 None:intergenic
GCTTCATTGAGCCTGAATGA+AGG 0.509878 6_1:-84248274 None:intergenic
AAGAAGTAGCCGGCGGTGGG+AGG 0.510660 6_1:+84244087 Msa0895760:five_prime_UTR
TCTCAAATTATTAACAGTGT+CGG 0.512179 6_1:-84248562 None:intergenic
TTGGTCAGTAAGAGCTGCAA+TGG 0.512404 6_1:+84246273 Msa0895760:three_prime_UTR
AGAAGATCAAAGGAGCTGTC+AGG 0.513258 6_1:+84246807 Msa0895760:three_prime_UTR
ATTCAATTGCAGGAGCATCT+AGG 0.515971 6_1:+84246240 Msa0895760:three_prime_UTR
AAGGGAGAGAGAAACGGGAA+CGG 0.517781 6_1:+84243928 None:intergenic
AAGAAGTCGCCGGCGGTGGA+AGG 0.523697 6_1:+84244053 Msa0895760:five_prime_UTR
CCGGTACTCCCTTCCACCGC+CGG 0.525002 6_1:-84244062 None:intergenic
CAACAAACAACAGTCCTAGA+TGG 0.525178 6_1:+84247814 Msa0895760:three_prime_UTR
CTGAGAAAGCAGCAGTGCAG+TGG 0.528186 6_1:+84248072 Msa0895760:three_prime_UTR
AGAAGTAGCCGGCGGTGGGA+GGG 0.529743 6_1:+84244088 Msa0895760:five_prime_UTR
CCGGCGGTGGAAGGGAGTAC+CGG 0.530768 6_1:+84244062 Msa0895760:five_prime_UTR
AGAAAGTTTGCAGAAGATGA+AGG 0.531151 6_1:+84245641 Msa0895760:intron
ATGGAATTCCTATGAAACCT+TGG 0.531728 6_1:+84246292 Msa0895760:three_prime_UTR
ACCGCCGGCTACTTCTTCTC+CGG 0.532364 6_1:-84244081 None:intergenic
CTGTGCCTCTATTGGCAGAA+GGG 0.534725 6_1:+84247709 Msa0895760:three_prime_UTR
CATTACCTCGTTGGAGTCAG+AGG 0.535482 6_1:-84247883 None:intergenic
GACGAAAGAAAGAACGGGAG+AGG 0.535570 6_1:+84243964 Msa0895760:five_prime_UTR
TGTTGAAGAAAGGAAACAAA+TGG 0.535795 6_1:+84246346 Msa0895760:three_prime_UTR
TGTAAGTTGCACCATAAGCT+AGG 0.541495 6_1:+84248813 Msa0895760:three_prime_UTR
GGACGGGAACGAGAGAAAGA+GGG 0.542707 6_1:+84243985 Msa0895760:five_prime_UTR
ATTGCCTCTTGTAAATGTTG+GGG 0.545790 6_1:-84247763 None:intergenic
AATGAGGCGTGGAAGGAAGA+TGG 0.548441 6_1:+84246190 Msa0895760:three_prime_UTR
TCTCTTCAAATTGTTTACAA+TGG 0.549100 6_1:-84247934 None:intergenic
ATTGCAGGAGCATCTAGGCC+AGG 0.550141 6_1:+84246245 Msa0895760:three_prime_UTR
AAGTGCCTTTGCTCTTATGG+TGG 0.551298 6_1:+84246718 Msa0895760:three_prime_UTR
AGATTCGCCATTACTGAACC+AGG 0.551614 6_1:-84245460 None:intergenic
TTTGAGAAAATCACATAAGT+CGG 0.553435 6_1:+84248578 Msa0895760:three_prime_UTR
ACGGGAACGGGAGAAAGAAG+GGG 0.555167 6_1:+84243941 None:intergenic
AAATAACAGAAACATTTATG+AGG 0.555460 6_1:-84246744 None:intergenic
CTTGGATCAACAACTTAAGC+AGG 0.556220 6_1:+84246310 Msa0895760:three_prime_UTR
AGGTTTCACATACTCTAAGT+AGG 0.556394 6_1:-84246855 None:intergenic
ATGTAATCCTGGTTCAGTAA+TGG 0.561047 6_1:+84245453 Msa0895760:CDS
TATGGGAAATGAGGCGTGGA+AGG 0.561411 6_1:+84246183 Msa0895760:three_prime_UTR
AAATGAAAACTGAACATGAA+AGG 0.561852 6_1:-84247205 None:intergenic
GACGGGAACGAGAGAAAGAG+GGG 0.564331 6_1:+84243986 Msa0895760:five_prime_UTR
AGAAGTCGCCGGCGGTGGAA+GGG 0.564843 6_1:+84244054 Msa0895760:five_prime_UTR
CCGGTACTCCCTCCCACCGC+CGG 0.565659 6_1:-84244096 None:intergenic
TGAGAAAGCTATGGGAAATG+AGG 0.567042 6_1:+84246174 Msa0895760:three_prime_UTR
GCGTGGAAGGAAGATGGTGC+AGG 0.567129 6_1:+84246196 Msa0895760:three_prime_UTR
GTCGGTATAATTATATGTGT+CGG 0.569093 6_1:+84248596 Msa0895760:three_prime_UTR
ACAACTTAAGCAGGAGTGGT+TGG 0.573065 6_1:+84246319 Msa0895760:three_prime_UTR
GATTGCTTCTGAGAATCGAC+AGG 0.573387 6_1:+84244686 Msa0895760:CDS
TCATAGGTTGTGTACAGTGG+TGG 0.574010 6_1:+84248652 Msa0895760:three_prime_UTR
ACCACCGGCGAATTCTTCTC+CGG 0.574099 6_1:-84244115 None:intergenic
GAGAAGAAGTAGCCGGCGGT+GGG 0.576030 6_1:+84244084 Msa0895760:five_prime_UTR
TGCTGGAGTGAGAAAGCTAT+GGG 0.576084 6_1:+84246166 Msa0895760:three_prime_UTR
GGTGGGATTGGATGAAGATG+TGG 0.576445 6_1:+84244135 Msa0895760:five_prime_UTR
CCAAGTCCCCTGAACAGAGA+AGG 0.577586 6_1:+84246396 Msa0895760:three_prime_UTR
GGTTGGCCAGTGTTGAAGAA+AGG 0.578756 6_1:+84246336 Msa0895760:three_prime_UTR
TTTGGACCGAAAATCACTCA+TGG 0.580658 6_1:+84247965 Msa0895760:three_prime_UTR
GAGAAGAATTCGCCGGTGGT+GGG 0.582133 6_1:+84244118 Msa0895760:five_prime_UTR
GTGCTGGAGTGAGAAAGCTA+TGG 0.583096 6_1:+84246165 Msa0895760:three_prime_UTR
ACTGTGCCTCTATTGGCAGA+AGG 0.584005 6_1:+84247708 Msa0895760:three_prime_UTR
CAGAGAATGCAAGTGATGGA+TGG 0.585016 6_1:+84245407 Msa0895760:intron
GGATGTTTAATAGAAGAAAG+TGG 0.585798 6_1:+84248238 Msa0895760:three_prime_UTR
TTAACCCCAACATTTACAAG+AGG 0.586501 6_1:+84247759 Msa0895760:three_prime_UTR
CAAAGCTGTGGTGGAGACGC+CGG 0.591000 6_1:+84244841 Msa0895760:CDS
GCCATTACTAGGATTTCTTG+GGG 0.591419 6_1:+84246962 Msa0895760:intron
GGCTCAGAGAATGCAAGTGA+TGG 0.597683 6_1:+84245403 Msa0895760:intron
TTCACATACTCTAAGTAGGA+AGG 0.602936 6_1:-84246851 None:intergenic
ATCAACAACTTAAGCAGGAG+TGG 0.603415 6_1:+84246315 Msa0895760:three_prime_UTR
CATAACATACTTCCCTGCAT+AGG 0.604754 6_1:-84247052 None:intergenic
TCTTCATCCAATCCCACCAC+CGG 0.607139 6_1:-84244130 None:intergenic
CTTGCGGAAATTCAAAGCTG+TGG 0.609411 6_1:+84244829 Msa0895760:CDS
CGGGAACGGGAGAAAGAAGG+GGG 0.610650 6_1:+84243942 Msa0895760:five_prime_UTR
TTGTTTGTTGAATCTGAGAG+TGG 0.611353 6_1:-84247801 None:intergenic
TGTGCCTCTATTGGCAGAAG+GGG 0.614205 6_1:+84247710 Msa0895760:three_prime_UTR
TGACATGCTTCTCAAAAGAG+AGG 0.614433 6_1:+84248165 Msa0895760:three_prime_UTR
ATATAAATGAAGAAGATCAA+AGG 0.618445 6_1:+84246797 Msa0895760:three_prime_UTR
ATGAAGCACGGATACGAACA+CGG 0.621255 6_1:+84248516 Msa0895760:three_prime_UTR
AGTACCGGAGAAGAAGTAGC+CGG 0.622748 6_1:+84244077 Msa0895760:five_prime_UTR
ATTGCAGTATCAGAGAATGA+TGG 0.624136 6_1:+84248099 Msa0895760:three_prime_UTR
AGGAGAGTTGCTGCTTTGAG+TGG 0.630829 6_1:+84246216 Msa0895760:three_prime_UTR
AGAAAGGAAACAAATGGCCA+GGG 0.632334 6_1:+84246352 Msa0895760:three_prime_UTR
TTCAGGCTCAATGAAGCAAG+AGG 0.636416 6_1:+84248280 Msa0895760:three_prime_UTR
CGATAACAGGAACCTATGCA+GGG 0.636873 6_1:+84247040 Msa0895760:three_prime_UTR
TATGAAGCACGAATACTCCT+CGG 0.637050 6_1:-84248634 None:intergenic
TGTTGCTGCAAACAACGCAA+TGG 0.638980 6_1:+84248028 Msa0895760:three_prime_UTR
GAGAATGATGGAAGAACAGG+CGG 0.639655 6_1:+84248111 Msa0895760:three_prime_UTR
AAGTTGTTGATGACAATCAG+AGG 0.642908 6_1:-84248871 None:intergenic
AGGAAAGAGCTAAAAGAACG+TGG 0.646692 6_1:+84247329 Msa0895760:intron
TTGTTGTGTACTATGAAGCA+CGG 0.651488 6_1:+84248504 Msa0895760:three_prime_UTR
GGAAGCCACCATAAGAGCAA+AGG 0.652426 6_1:-84246723 None:intergenic
ACGCAATGGCAATGATCACA+CGG 0.655986 6_1:+84248042 Msa0895760:three_prime_UTR
CCTTTGGATTCTGCATAGCG+AGG 0.656002 6_1:-84245674 None:intergenic
AAGCTATGGGAAATGAGGCG+TGG 0.656388 6_1:+84246179 Msa0895760:three_prime_UTR
GCTCAATGAAGCAAGAGGAG+AGG 0.657394 6_1:+84248285 Msa0895760:three_prime_UTR
AGAACAGGCGGAGTATGATG+AGG 0.659983 6_1:+84248123 Msa0895760:three_prime_UTR
GCGGAAATTCAAAGCTGTGG+TGG 0.662898 6_1:+84244832 Msa0895760:CDS
CCTCGCTATGCAGAATCCAA+AGG 0.671150 6_1:+84245674 Msa0895760:three_prime_UTR
ACCGGAGAAGAAGTCGCCGG+CGG 0.678350 6_1:+84244046 Msa0895760:five_prime_UTR
AGTACCGGAGAAGAAGTCGC+CGG 0.680845 6_1:+84244043 Msa0895760:five_prime_UTR
GCTTCATAGGTTGTGTACAG+TGG 0.684369 6_1:+84248649 Msa0895760:three_prime_UTR
AGTACCGGAGAAGAATTCGC+CGG 0.686001 6_1:+84244111 Msa0895760:five_prime_UTR
AAGTGATGGATGGTATCCTC+CGG 0.690440 6_1:+84245417 Msa0895760:CDS
AAGAGCTAAAAGAACGTGGG+AGG 0.693701 6_1:+84247333 Msa0895760:three_prime_UTR
ACCGGAGAAGAATTCGCCGG+TGG 0.693766 6_1:+84244114 Msa0895760:five_prime_UTR
GGAAAGAGCTAAAAGAACGT+GGG 0.700105 6_1:+84247330 Msa0895760:intron
GGTGTCAGACACCTAATCCG+AGG 0.702396 6_1:+84248617 Msa0895760:three_prime_UTR
ACCGGAGAAGAAGTAGCCGG+CGG 0.708693 6_1:+84244080 Msa0895760:five_prime_UTR
GATGATCTAACAGAGGTGTG+TGG 0.712310 6_1:+84247156 Msa0895760:three_prime_UTR
GAAGGGGATGATATAAACGA+CGG 0.720618 6_1:+84247726 Msa0895760:three_prime_UTR
TGTTTAATAGAAGAAAGTGG+TGG 0.722197 6_1:+84248241 Msa0895760:three_prime_UTR
TTCTGCCAATAGAGGCACAG+TGG 0.725506 6_1:-84247706 None:intergenic
TTTGCCGGATGATCTAACAG+AGG 0.743477 6_1:+84247149 Msa0895760:three_prime_UTR
ACGGGAACGAGAGAAAGAGG+GGG 0.747070 6_1:+84243987 Msa0895760:five_prime_UTR
ATTTGCCTCTGACTCCAACG+AGG 0.753481 6_1:+84247878 Msa0895760:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGAAATTATGATAAATAG+AGG + chr6_1:84245265-84245284 Msa0895760:intron 15.0%
!! TAGAAATTATGATAAATAGA+GGG + chr6_1:84245266-84245285 Msa0895760:intron 15.0%
!!! GAAAAAGTATTATTAGATTA+GGG - chr6_1:84245611-84245630 None:intergenic 15.0%
!! ATCTATTCTTAAATCTTAAA+AGG + chr6_1:84245726-84245745 Msa0895760:intron 15.0%
!! ATATAGGAAAAATAAAATAG+AGG + chr6_1:84245906-84245925 Msa0895760:intron 15.0%
!! TATAGGAAAAATAAAATAGA+GGG + chr6_1:84245907-84245926 Msa0895760:intron 15.0%
!! AGATTTAAAAGTAAGAAAAA+TGG - chr6_1:84246062-84246081 None:intergenic 15.0%
!! TAAAAGATTAAATGTTTATG+AGG - chr6_1:84247593-84247612 None:intergenic 15.0%
!!! TGCATTTTGTGTTTTATTTT+TGG + chr6_1:84244261-84244280 Msa0895760:intron 20.0%
!! AGAATCCAAAAAAAAAAAAC+GGG - chr6_1:84244324-84244343 None:intergenic 20.0%
!! CAGAATCCAAAAAAAAAAAA+CGG - chr6_1:84244325-84244344 None:intergenic 20.0%
!!! TTTTTTTTTTTGGATTCTGA+TGG + chr6_1:84244326-84244345 Msa0895760:intron 20.0%
!!! TTTTTTTTTTGGATTCTGAT+GGG + chr6_1:84244327-84244346 Msa0895760:intron 20.0%
!!! AGGTTTTAATTTTTCAGTTT+TGG + chr6_1:84244392-84244411 Msa0895760:intron 20.0%
!! TAATTAACTTCAAAAAGAGT+AGG - chr6_1:84244613-84244632 None:intergenic 20.0%
!! CAATTAGTTAACACAATAAA+AGG - chr6_1:84244754-84244773 None:intergenic 20.0%
!! TTTGTTCTTGTGTTTATTTA+TGG + chr6_1:84244973-84244992 Msa0895760:intron 20.0%
!!! TTAAAGGTAGCATTAAATTT+TGG + chr6_1:84245132-84245151 Msa0895760:intron 20.0%
!!! GGAAAAAGTATTATTAGATT+AGG - chr6_1:84245612-84245631 None:intergenic 20.0%
!! AAATAACAGAAACATTTATG+AGG - chr6_1:84246747-84246766 None:intergenic 20.0%
!! ATATAAATGAAGAAGATCAA+AGG + chr6_1:84246797-84246816 Msa0895760:three_prime_UTR 20.0%
!!! AGATTCAAAGTTTTAAACTT+AGG + chr6_1:84247535-84247554 Msa0895760:three_prime_UTR 20.0%
!! ATGAGGTTTGTATATTAATA+TGG - chr6_1:84247576-84247595 None:intergenic 20.0%
!!! TTTTCTATATGTATATAGTG+AGG + chr6_1:84247667-84247686 Msa0895760:intron 20.0%
!! TTTCTATATGTATATAGTGA+GGG + chr6_1:84247668-84247687 Msa0895760:intron 20.0%
!!! GAGTTTTATAGAAACAAATA+TGG + chr6_1:84248217-84248236 Msa0895760:three_prime_UTR 20.0%
!! AGTCTTTATTCAATAAAGTA+GGG - chr6_1:84248774-84248793 None:intergenic 20.0%
!! TAGTCTTTATTCAATAAAGT+AGG - chr6_1:84248775-84248794 None:intergenic 20.0%
!!! TCTTTCCCGTTTTTTTTTTT+TGG + chr6_1:84244316-84244335 Msa0895760:intron 25.0%
!!! TTTTTTTTTGGATTCTGATG+GGG + chr6_1:84244328-84244347 Msa0895760:intron 25.0%
!! AATCTGTTAGTTTGATCTTA+AGG + chr6_1:84244372-84244391 Msa0895760:intron 25.0%
!!! TTTTGTTGTTTGGTAATTCT+GGG + chr6_1:84244474-84244493 Msa0895760:intron 25.0%
!! AAGATGTTATTTATTCCCTA+AGG + chr6_1:84244541-84244560 Msa0895760:intron 25.0%
!!! TTTCATTTCAGGAGTTTTTT+TGG + chr6_1:84244663-84244682 Msa0895760:intron 25.0%
!!! TTCATTTCAGGAGTTTTTTT+GGG + chr6_1:84244664-84244683 Msa0895760:intron 25.0%
!! AATTGAGATTGTGTTTGTTT+TGG + chr6_1:84245009-84245028 Msa0895760:intron 25.0%
! AAAAATCATCAGAAACATCA+GGG - chr6_1:84245085-84245104 None:intergenic 25.0%
!! AAATCGCAATCTTCTTTTAA+AGG + chr6_1:84245116-84245135 Msa0895760:intron 25.0%
!!! TAGCATTAAATTTTGGTATC+TGG + chr6_1:84245139-84245158 Msa0895760:intron 25.0%
!! TCTATGATTGTAGATTTTTC+TGG + chr6_1:84245368-84245387 Msa0895760:intron 25.0%
!! CTATGATTGTAGATTTTTCT+GGG + chr6_1:84245369-84245388 Msa0895760:intron 25.0%
! ATTATTAGATTAGGGTAGAA+TGG - chr6_1:84245603-84245622 None:intergenic 25.0%
! TCTTAAATCTTAAAAGGATG+AGG + chr6_1:84245732-84245751 Msa0895760:intron 25.0%
! TATGAGTAAAAGATGAAAAC+AGG - chr6_1:84245777-84245796 None:intergenic 25.0%
! AAAATGAAGTTGACTAATCT+TGG + chr6_1:84246002-84246021 Msa0895760:three_prime_UTR 25.0%
! AAAAGTAAGAAAAATGGTGA+TGG - chr6_1:84246056-84246075 None:intergenic 25.0%
! ATGTTAACATATACACTTAC+GGG - chr6_1:84246458-84246477 None:intergenic 25.0%
! GATGTTAACATATACACTTA+CGG - chr6_1:84246459-84246478 None:intergenic 25.0%
! TTATGACATTACTACAATCA+CGG - chr6_1:84246614-84246633 None:intergenic 25.0%
!! ATTTAGCAATTTTCTTTGAC+AGG + chr6_1:84246670-84246689 Msa0895760:intron 25.0%
! TATATTCGAAGAATTGCAAA+TGG - chr6_1:84246782-84246801 None:intergenic 25.0%
! TTACAATATACACAAGTAAC+AGG - chr6_1:84246878-84246897 None:intergenic 25.0%
! TTCAAAGTGTACACAAAATA+CGG - chr6_1:84247104-84247123 None:intergenic 25.0%
! AAATGAAAACTGAACATGAA+AGG - chr6_1:84247208-84247227 None:intergenic 25.0%
! TTTGGAAATAAAGACAACAT+TGG - chr6_1:84247413-84247432 None:intergenic 25.0%
!!! CTGTTGACTTTAATAAGAAT+TGG + chr6_1:84247481-84247500 Msa0895760:intron 25.0%
!!! TCAAAGTTTTAAACTTAGGT+AGG + chr6_1:84247539-84247558 Msa0895760:intron 25.0%
!!! ATCTTTTAATTTTCTGAGTG+TGG + chr6_1:84247605-84247624 Msa0895760:intron 25.0%
!! GCAAATTTTGTCTTTTCTAA+TGG - chr6_1:84247864-84247883 None:intergenic 25.0%
! TCTCTTCAAATTGTTTACAA+TGG - chr6_1:84247937-84247956 None:intergenic 25.0%
! TCTCAAATTATTAACAGTGT+CGG - chr6_1:84248565-84248584 None:intergenic 25.0%
! TTTGAGAAAATCACATAAGT+CGG + chr6_1:84248578-84248597 Msa0895760:three_prime_UTR 25.0%
TTCTTCTTCTTCTTCATCAA+AGG + chr6_1:84244178-84244197 Msa0895760:CDS 30.0%
ACAAACCCTTAATATGCAAT+CGG - chr6_1:84244296-84244315 None:intergenic 30.0%
! CATCTATGTGTGCAAAATTT+TGG + chr6_1:84244444-84244463 Msa0895760:intron 30.0%
!!! TGGTTTTTGCTTTTGTTGTT+TGG + chr6_1:84244464-84244483 Msa0895760:intron 30.0%
!!! CTTTTGTTGTTTGGTAATTC+TGG + chr6_1:84244473-84244492 Msa0895760:intron 30.0%
!!! ATTGGTTTGTTTGGTGATTT+TGG + chr6_1:84244500-84244519 Msa0895760:intron 30.0%
!!! TTGGTTTGTTTGGTGATTTT+GGG + chr6_1:84244501-84244520 Msa0895760:intron 30.0%
!! TTTTGGGTGCAAAATTTTTC+AGG + chr6_1:84244517-84244536 Msa0895760:intron 30.0%
!!! TATCATCTTGGCATGTTTTT+TGG + chr6_1:84244565-84244584 Msa0895760:intron 30.0%
AAAAGCTCAGATATTCAAAC+TGG - chr6_1:84244807-84244826 None:intergenic 30.0%
! ATATCTGAGCTTTTATCTTG+CGG + chr6_1:84244813-84244832 Msa0895760:CDS 30.0%
!!! GATTGTGTTTGTTTTGGTTT+AGG + chr6_1:84245015-84245034 Msa0895760:intron 30.0%
TGAAGTTATGAATCAGATGT+TGG + chr6_1:84245051-84245070 Msa0895760:intron 30.0%
GAAAAATCATCAGAAACATC+AGG - chr6_1:84245086-84245105 None:intergenic 30.0%
! TTTTTCTGGGTTTGTGTTTT+TGG + chr6_1:84245382-84245401 Msa0895760:intron 30.0%
!!! TTACATGAATTTTGAGACAC+CGG - chr6_1:84245439-84245458 None:intergenic 30.0%
TCTCAAAATTCATGTAATCC+TGG + chr6_1:84245442-84245461 Msa0895760:CDS 30.0%
ATGAGAATTTGGCCTAATAA+TGG + chr6_1:84245524-84245543 Msa0895760:exon 30.0%
TAATGGCGAATCAATAATTC+TGG - chr6_1:84245563-84245582 None:intergenic 30.0%
CAAACTTGGACATAGAATAA+TGG - chr6_1:84245580-84245599 None:intergenic 30.0%
AAACTCAAACTCAAACTACT+TGG - chr6_1:84245865-84245884 None:intergenic 30.0%
! TAGTTTGAGTTTGAGTTTGA+GGG + chr6_1:84245867-84245886 Msa0895760:intron 30.0%
! ATGATAGGAAAGGATTTGTT+AGG - chr6_1:84245975-84245994 None:intergenic 30.0%
!! TAAGAAAAATGGTGATGGAA+AGG - chr6_1:84246051-84246070 None:intergenic 30.0%
ATAAAGAAGGAGATTGTATG+GGG - chr6_1:84246111-84246130 None:intergenic 30.0%
CATAAAGAAGGAGATTGTAT+GGG - chr6_1:84246112-84246131 None:intergenic 30.0%
TACTGTACAATCCATAAAGA+AGG - chr6_1:84246124-84246143 None:intergenic 30.0%
ACAAAAATGAAGATTAGTGC+TGG + chr6_1:84246149-84246168 Msa0895760:three_prime_UTR 30.0%
TGTTGAAGAAAGGAAACAAA+TGG + chr6_1:84246346-84246365 Msa0895760:three_prime_UTR 30.0%
ATGTTAACATCTTGAGTGTT+TGG + chr6_1:84246468-84246487 Msa0895760:intron 30.0%
!! TCTGTCATTGACTTTAAAGA+AGG + chr6_1:84246540-84246559 Msa0895760:intron 30.0%
TGTCATAAGTGTGTAAATTG+TGG + chr6_1:84246626-84246645 Msa0895760:intron 30.0%
!! GTTTCTGTTATTTCTGTAAG+TGG + chr6_1:84246754-84246773 Msa0895760:three_prime_UTR 30.0%
AAATGGAGTTCGAAATTGTT+TGG + chr6_1:84246985-84247004 Msa0895760:three_prime_UTR 30.0%
! TCTTTTGATGTTTCATTTGC+CGG + chr6_1:84247134-84247153 Msa0895760:three_prime_UTR 30.0%
!! TTCACACATAATTTTGATCC+AGG + chr6_1:84247228-84247247 Msa0895760:three_prime_UTR 30.0%
!! TCATCAGTTGTATTTTTCAG+AGG - chr6_1:84247268-84247287 None:intergenic 30.0%
!!! CCTTTTTTTTTGCATACAAC+AGG - chr6_1:84247312-84247331 None:intergenic 30.0%
CCTGTTGTATGCAAAAAAAA+AGG + chr6_1:84247309-84247328 Msa0895760:intron 30.0%
ATAAAGACAACATTGGACAA+TGG - chr6_1:84247406-84247425 None:intergenic 30.0%
GCATCTTAATCTTCTAACTA+TGG + chr6_1:84247627-84247646 Msa0895760:intron 30.0%
TATTGCCTCTTGTAAATGTT+GGG - chr6_1:84247767-84247786 None:intergenic 30.0%
TTATTGCCTCTTGTAAATGT+TGG - chr6_1:84247768-84247787 None:intergenic 30.0%
TTAAACTTGTAAGACCATCT+AGG - chr6_1:84247831-84247850 None:intergenic 30.0%
!! TAGAGCTTTAGAAGCTAAAT+TGG + chr6_1:84248195-84248214 Msa0895760:three_prime_UTR 30.0%
GGATGTTTAATAGAAGAAAG+TGG + chr6_1:84248238-84248257 Msa0895760:three_prime_UTR 30.0%
TGTTTAATAGAAGAAAGTGG+TGG + chr6_1:84248241-84248260 Msa0895760:three_prime_UTR 30.0%
GTAATAATAGTCCTTCATTC+AGG + chr6_1:84248263-84248282 Msa0895760:three_prime_UTR 30.0%
GCAGATAAAACATATTTGCT+TGG + chr6_1:84248325-84248344 Msa0895760:three_prime_UTR 30.0%
! AGATCACACTTTTCAGAAAA+TGG + chr6_1:84248370-84248389 Msa0895760:three_prime_UTR 30.0%
GTCGGTATAATTATATGTGT+CGG + chr6_1:84248596-84248615 Msa0895760:three_prime_UTR 30.0%
TGTCATCCGATTGCATATTA+AGG + chr6_1:84244287-84244306 Msa0895760:intron 35.0%
GTCATCCGATTGCATATTAA+GGG + chr6_1:84244288-84244307 Msa0895760:intron 35.0%
ATTCCCTAAGGTTATCATCT+TGG + chr6_1:84244553-84244572 Msa0895760:intron 35.0%
ATGCCAAGATGATAACCTTA+GGG - chr6_1:84244559-84244578 None:intergenic 35.0%
!! CAATCGCTTTGTTTCATTTC+AGG + chr6_1:84244652-84244671 Msa0895760:intron 35.0%
CAGATATTCAAACTGGAAGT+TGG - chr6_1:84244800-84244819 None:intergenic 35.0%
GGATTTCTTATCGGAATTCA+AGG + chr6_1:84244886-84244905 Msa0895760:intron 35.0%
TGAGAATCGACGATTTGATA+AGG + chr6_1:84244928-84244947 Msa0895760:intron 35.0%
AAAGAAGATTGCGATTTCAG+AGG - chr6_1:84245113-84245132 None:intergenic 35.0%
TAGATCACAAACAGACACAT+TGG - chr6_1:84245336-84245355 None:intergenic 35.0%
ATGTAATCCTGGTTCAGTAA+TGG + chr6_1:84245453-84245472 Msa0895760:CDS 35.0%
ACTTGGAAGCAATGAGAATT+TGG + chr6_1:84245513-84245532 Msa0895760:CDS 35.0%
ATCCCTGTTGTACCATTATT+AGG - chr6_1:84245539-84245558 None:intergenic 35.0%
! TGCAAACTTTCTGGTGAAAT+AGG - chr6_1:84245633-84245652 None:intergenic 35.0%
TTCATCTTCTGCAAACTTTC+TGG - chr6_1:84245642-84245661 None:intergenic 35.0%
AGAAAGTTTGCAGAAGATGA+AGG + chr6_1:84245641-84245660 Msa0895760:intron 35.0%
ATCTTAAAAGGATGAGGACA+TGG + chr6_1:84245738-84245757 Msa0895760:intron 35.0%
GAGTAAAAGATGAAAACAGG+AGG - chr6_1:84245774-84245793 None:intergenic 35.0%
! GTAGTTTGAGTTTGAGTTTG+AGG + chr6_1:84245866-84245885 Msa0895760:intron 35.0%
! AGTTTGAGTTTGAGTTTGAG+GGG + chr6_1:84245868-84245887 Msa0895760:intron 35.0%
GGGTATCATGCATGATATAT+AGG + chr6_1:84245890-84245909 Msa0895760:intron 35.0%
!! TTCATTTTGACCTGCATGAT+AGG - chr6_1:84245990-84246009 None:intergenic 35.0%
CCATAAAGAAGGAGATTGTA+TGG - chr6_1:84246113-84246132 None:intergenic 35.0%
CCATACAATCTCCTTCTTTA+TGG + chr6_1:84246110-84246129 Msa0895760:intron 35.0%
TTTGAGTGGAATTCAATTGC+AGG + chr6_1:84246230-84246249 Msa0895760:three_prime_UTR 35.0%
ATGGAATTCCTATGAAACCT+TGG + chr6_1:84246292-84246311 Msa0895760:three_prime_UTR 35.0%
TTGTTGATCCAAGGTTTCAT+AGG - chr6_1:84246303-84246322 None:intergenic 35.0%
TTGTTTCCTTTCTTCAACAC+TGG - chr6_1:84246345-84246364 None:intergenic 35.0%
! AATTTTCCTTCTCTGTTCAG+GGG - chr6_1:84246405-84246424 None:intergenic 35.0%
! CAATTTTCCTTCTCTGTTCA+GGG - chr6_1:84246406-84246425 None:intergenic 35.0%
AGAAGCTATTGCTGCAAAAT+GGG + chr6_1:84246427-84246446 Msa0895760:three_prime_UTR 35.0%
! TAGCAATTTTCTTTGACAGG+AGG + chr6_1:84246673-84246692 Msa0895760:intron 35.0%
TTCACATACTCTAAGTAGGA+AGG - chr6_1:84246854-84246873 None:intergenic 35.0%
AGGTTTCACATACTCTAAGT+AGG - chr6_1:84246858-84246877 None:intergenic 35.0%
ATTTACAGCTGTTATTCGCA+AGG + chr6_1:84246903-84246922 Msa0895760:intron 35.0%
TTTACAGCTGTTATTCGCAA+GGG + chr6_1:84246904-84246923 Msa0895760:intron 35.0%
TGCCATTACTAGGATTTCTT+GGG + chr6_1:84246961-84246980 Msa0895760:intron 35.0%
GGTCAAAGTTATACGATAAC+AGG + chr6_1:84247027-84247046 Msa0895760:three_prime_UTR 35.0%
AAGCAAAATCTCTCAGCATT+TGG - chr6_1:84247431-84247450 None:intergenic 35.0%
TTAACCCCAACATTTACAAG+AGG + chr6_1:84247759-84247778 Msa0895760:three_prime_UTR 35.0%
ATTGCCTCTTGTAAATGTTG+GGG - chr6_1:84247766-84247785 None:intergenic 35.0%
ACAAGAGGCAATAAGTTCTT+TGG + chr6_1:84247774-84247793 Msa0895760:three_prime_UTR 35.0%
! TTGTTTGTTGAATCTGAGAG+TGG - chr6_1:84247804-84247823 None:intergenic 35.0%
AACAGAATTCATTACCTCGT+TGG - chr6_1:84247895-84247914 None:intergenic 35.0%
TTTGAAGAGACAAGTTCGTT+TGG + chr6_1:84247947-84247966 Msa0895760:three_prime_UTR 35.0%
! ACAAAGCCATGAGTGATTTT+CGG - chr6_1:84247974-84247993 None:intergenic 35.0%
ATTGCAGTATCAGAGAATGA+TGG + chr6_1:84248099-84248118 Msa0895760:three_prime_UTR 35.0%
TTGTTGTGTACTATGAAGCA+CGG + chr6_1:84248504-84248523 Msa0895760:three_prime_UTR 35.0%
!! AAGTTGTTGATGACAATCAG+AGG - chr6_1:84248874-84248893 None:intergenic 35.0%
! TGTTGTTTGGTAATTCTGGG+TGG + chr6_1:84244477-84244496 Msa0895760:intron 40.0%
! TTTGGTAATTCTGGGTGGAT+TGG + chr6_1:84244482-84244501 Msa0895760:intron 40.0%
CATGCCAAGATGATAACCTT+AGG - chr6_1:84244560-84244579 None:intergenic 40.0%
GTTCAGTAATGGCGAATCTA+AGG + chr6_1:84245464-84245483 Msa0895760:CDS 40.0%
TGGCCTAATAATGGTACAAC+AGG + chr6_1:84245533-84245552 Msa0895760:intron 40.0%
GGCCTAATAATGGTACAACA+GGG + chr6_1:84245534-84245553 Msa0895760:intron 40.0%
TTAGGGTAGAATGGCAAACT+TGG - chr6_1:84245594-84245613 None:intergenic 40.0%
TGCTTACATGACATCACCTT+TGG - chr6_1:84245693-84245712 None:intergenic 40.0%
! GTTTGAGTTTGAGTTTGAGG+GGG + chr6_1:84245869-84245888 Msa0895760:intron 40.0%
! TTTGAGTTTGAGTTTGAGGG+GGG + chr6_1:84245870-84245889 Msa0895760:intron 40.0%
GAAGAATGTATCAGCTGTGT+TGG - chr6_1:84245939-84245958 None:intergenic 40.0%
CAAATCCTTTCCTATCATGC+AGG + chr6_1:84245977-84245996 Msa0895760:intron 40.0%
TTTGACCTGCATGATAGGAA+AGG - chr6_1:84245985-84246004 None:intergenic 40.0%
AGGAGATTGTATGGGGTAAA+AGG - chr6_1:84246104-84246123 None:intergenic 40.0%
TGAGAAAGCTATGGGAAATG+AGG + chr6_1:84246174-84246193 Msa0895760:three_prime_UTR 40.0%
!! ATTCAATTGCAGGAGCATCT+AGG + chr6_1:84246240-84246259 Msa0895760:three_prime_UTR 40.0%
TCTTACTGACCAAAAAAGCC+TGG - chr6_1:84246266-84246285 None:intergenic 40.0%
! CTGCTTAAGTTGTTGATCCA+AGG - chr6_1:84246312-84246331 None:intergenic 40.0%
CTTGGATCAACAACTTAAGC+AGG + chr6_1:84246310-84246329 Msa0895760:three_prime_UTR 40.0%
ATCAACAACTTAAGCAGGAG+TGG + chr6_1:84246315-84246334 Msa0895760:three_prime_UTR 40.0%
AAGAAAGGAAACAAATGGCC+AGG + chr6_1:84246351-84246370 Msa0895760:three_prime_UTR 40.0%
AGAAAGGAAACAAATGGCCA+GGG + chr6_1:84246352-84246371 Msa0895760:three_prime_UTR 40.0%
! GCAATTTTCCTTCTCTGTTC+AGG - chr6_1:84246407-84246426 None:intergenic 40.0%
CAGAAGCTATTGCTGCAAAA+TGG + chr6_1:84246426-84246445 Msa0895760:three_prime_UTR 40.0%
!! AGAAAGTGCCTTTGCTCTTA+TGG + chr6_1:84246715-84246734 Msa0895760:three_prime_UTR 40.0%
TTACAGCTGTTATTCGCAAG+GGG + chr6_1:84246905-84246924 Msa0895760:intron 40.0%
! GTGCCATTACTAGGATTTCT+TGG + chr6_1:84246960-84246979 Msa0895760:intron 40.0%
GCCATTACTAGGATTTCTTG+GGG + chr6_1:84246962-84246981 Msa0895760:intron 40.0%
TCCCCAAGAAATCCTAGTAA+TGG - chr6_1:84246966-84246985 None:intergenic 40.0%
ACTAGGATTTCTTGGGGAAA+TGG + chr6_1:84246968-84246987 Msa0895760:intron 40.0%
CATAACATACTTCCCTGCAT+AGG - chr6_1:84247055-84247074 None:intergenic 40.0%
AAAATACAACTGATGACCCG+AGG + chr6_1:84247272-84247291 Msa0895760:intron 40.0%
AGGAAAGAGCTAAAAGAACG+TGG + chr6_1:84247329-84247348 Msa0895760:intron 40.0%
GGAAAGAGCTAAAAGAACGT+GGG + chr6_1:84247330-84247349 Msa0895760:intron 40.0%
AAAAGAACGTGGGAGGTTAA+AGG + chr6_1:84247340-84247359 Msa0895760:three_prime_UTR 40.0%
GAAGGGGATGATATAAACGA+CGG + chr6_1:84247726-84247745 Msa0895760:three_prime_UTR 40.0%
CAACAAACAACAGTCCTAGA+TGG + chr6_1:84247814-84247833 Msa0895760:three_prime_UTR 40.0%
TTTGGACCGAAAATCACTCA+TGG + chr6_1:84247965-84247984 Msa0895760:three_prime_UTR 40.0%
!! ATCACTCATGGCTTTGTACA+TGG + chr6_1:84247977-84247996 Msa0895760:three_prime_UTR 40.0%
! TCAGAGAATGATGGAAGAAC+AGG + chr6_1:84248108-84248127 Msa0895760:three_prime_UTR 40.0%
!! GTATGATGAGGAAGCATTAG+AGG + chr6_1:84248135-84248154 Msa0895760:three_prime_UTR 40.0%
TGACATGCTTCTCAAAAGAG+AGG + chr6_1:84248165-84248184 Msa0895760:three_prime_UTR 40.0%
ACTGTCAAAGTCAGAGTGTA+AGG - chr6_1:84248404-84248423 None:intergenic 40.0%
TATGAAGCACGAATACTCCT+CGG - chr6_1:84248637-84248656 None:intergenic 40.0%
TGTAAGTTGCACCATAAGCT+AGG + chr6_1:84248813-84248832 Msa0895760:three_prime_UTR 40.0%
GTTAGACATTGCCTAGCTTA+TGG - chr6_1:84248827-84248846 None:intergenic 40.0%
AAGGGGGACGAAAGAAAGAA+CGG + chr6_1:84243958-84243977 Msa0895760:five_prime_UTR 45.0%
AAAGAAAGAACGGGAGAGGA+CGG + chr6_1:84243968-84243987 Msa0895760:five_prime_UTR 45.0%
!! TCTGGGTGGATTGGTTTGTT+TGG + chr6_1:84244491-84244510 Msa0895760:intron 45.0%
! GATTGCTTCTGAGAATCGAC+AGG + chr6_1:84244686-84244705 Msa0895760:CDS 45.0%
CTTGCGGAAATTCAAAGCTG+TGG + chr6_1:84244829-84244848 Msa0895760:CDS 45.0%
CGTGGAGAGGGATTTCTTAT+CGG + chr6_1:84244877-84244896 Msa0895760:intron 45.0%
GAAGATTGCGATTTCAGAGG+TGG - chr6_1:84245110-84245129 None:intergenic 45.0%
! CAGAGAATGCAAGTGATGGA+TGG + chr6_1:84245407-84245426 Msa0895760:intron 45.0%
!! AAGTGATGGATGGTATCCTC+CGG + chr6_1:84245417-84245436 Msa0895760:CDS 45.0%
!!! CATGAATTTTGAGACACCGG+AGG - chr6_1:84245436-84245455 None:intergenic 45.0%
AGATTCGCCATTACTGAACC+AGG - chr6_1:84245463-84245482 None:intergenic 45.0%
CTTCCAAGTAATGTGCGAAC+AGG - chr6_1:84245502-84245521 None:intergenic 45.0%
TGCTGGAGTGAGAAAGCTAT+GGG + chr6_1:84246166-84246185 Msa0895760:three_prime_UTR 45.0%
TTGGTCAGTAAGAGCTGCAA+TGG + chr6_1:84246273-84246292 Msa0895760:three_prime_UTR 45.0%
ACAACTTAAGCAGGAGTGGT+TGG + chr6_1:84246319-84246338 Msa0895760:three_prime_UTR 45.0%
TTGGGTGCTCTGTTGCTAAT+TGG - chr6_1:84246380-84246399 None:intergenic 45.0%
AAGTGCCTTTGCTCTTATGG+TGG + chr6_1:84246718-84246737 Msa0895760:three_prime_UTR 45.0%
AGAAGATCAAAGGAGCTGTC+AGG + chr6_1:84246807-84246826 Msa0895760:three_prime_UTR 45.0%
! TTCTGACACGTGCCATTACT+AGG + chr6_1:84246951-84246970 Msa0895760:intron 45.0%
! GGATTTGCTTTGCTTGCATC+AGG + chr6_1:84247006-84247025 Msa0895760:three_prime_UTR 45.0%
ACGATAACAGGAACCTATGC+AGG + chr6_1:84247039-84247058 Msa0895760:three_prime_UTR 45.0%
CGATAACAGGAACCTATGCA+GGG + chr6_1:84247040-84247059 Msa0895760:three_prime_UTR 45.0%
! TGCAGGGAAGTATGTTATGC+AGG + chr6_1:84247056-84247075 Msa0895760:three_prime_UTR 45.0%
TTTGCCGGATGATCTAACAG+AGG + chr6_1:84247149-84247168 Msa0895760:three_prime_UTR 45.0%
CACACCTCTGTTAGATCATC+CGG - chr6_1:84247156-84247175 None:intergenic 45.0%
! GATGATCTAACAGAGGTGTG+TGG + chr6_1:84247156-84247175 Msa0895760:three_prime_UTR 45.0%
! AGGTTCAAGAGCCTTATCCT+CGG - chr6_1:84247292-84247311 None:intergenic 45.0%
AAGAGCTAAAAGAACGTGGG+AGG + chr6_1:84247333-84247352 Msa0895760:three_prime_UTR 45.0%
ATCTACCACTGTGCCTCTAT+TGG + chr6_1:84247701-84247720 Msa0895760:three_prime_UTR 45.0%
!! CATGGCTTTGTACATGGAGT+TGG + chr6_1:84247983-84248002 Msa0895760:three_prime_UTR 45.0%
TGTTGCTGCAAACAACGCAA+TGG + chr6_1:84248028-84248047 Msa0895760:three_prime_UTR 45.0%
ACGCAATGGCAATGATCACA+CGG + chr6_1:84248042-84248061 Msa0895760:three_prime_UTR 45.0%
! GAGAATGATGGAAGAACAGG+CGG + chr6_1:84248111-84248130 Msa0895760:three_prime_UTR 45.0%
GCTTCATTGAGCCTGAATGA+AGG - chr6_1:84248277-84248296 None:intergenic 45.0%
TTCAGGCTCAATGAAGCAAG+AGG + chr6_1:84248280-84248299 Msa0895760:three_prime_UTR 45.0%
ATGAAGCACGGATACGAACA+CGG + chr6_1:84248516-84248535 Msa0895760:three_prime_UTR 45.0%
!! GAGGAGTATTCGTGCTTCAT+AGG + chr6_1:84248636-84248655 Msa0895760:three_prime_UTR 45.0%
GCTTCATAGGTTGTGTACAG+TGG + chr6_1:84248649-84248668 Msa0895760:three_prime_UTR 45.0%
TCATAGGTTGTGTACAGTGG+TGG + chr6_1:84248652-84248671 Msa0895760:three_prime_UTR 45.0%
!!! TTTTTAATATAAATTTTACA+TGG + chr6_1:84248677-84248696 Msa0895760:three_prime_UTR 5.0%
AGGGGGACGAAAGAAAGAAC+GGG + chr6_1:84243959-84243978 Msa0895760:five_prime_UTR 50.0%
GACGAAAGAAAGAACGGGAG+AGG + chr6_1:84243964-84243983 Msa0895760:five_prime_UTR 50.0%
AAGAAAGAACGGGAGAGGAC+GGG + chr6_1:84243969-84243988 Msa0895760:five_prime_UTR 50.0%
! AGTACCGGAGAAGAAGTAGC+CGG + chr6_1:84244077-84244096 Msa0895760:five_prime_UTR 50.0%
! AGTACCGGAGAAGAATTCGC+CGG + chr6_1:84244111-84244130 Msa0895760:five_prime_UTR 50.0%
TCTTCATCCAATCCCACCAC+CGG - chr6_1:84244133-84244152 None:intergenic 50.0%
GGTGGGATTGGATGAAGATG+TGG + chr6_1:84244135-84244154 Msa0895760:five_prime_UTR 50.0%
GCGGAAATTCAAAGCTGTGG+TGG + chr6_1:84244832-84244851 Msa0895760:CDS 50.0%
TCCACGTTAGCCAAAACCAC+CGG - chr6_1:84244863-84244882 None:intergenic 50.0%
!!! TGGTTTTGGCTAACGTGGAG+AGG + chr6_1:84244864-84244883 Msa0895760:intron 50.0%
!!! GGTTTTGGCTAACGTGGAGA+GGG + chr6_1:84244865-84244884 Msa0895760:intron 50.0%
GGCTCAGAGAATGCAAGTGA+TGG + chr6_1:84245403-84245422 Msa0895760:intron 50.0%
GCTCCTGTTCGCACATTACT+TGG + chr6_1:84245496-84245515 Msa0895760:CDS 50.0%
CCTTTGGATTCTGCATAGCG+AGG - chr6_1:84245677-84245696 None:intergenic 50.0%
CCTCGCTATGCAGAATCCAA+AGG + chr6_1:84245674-84245693 Msa0895760:three_prime_UTR 50.0%
GTGCTGGAGTGAGAAAGCTA+TGG + chr6_1:84246165-84246184 Msa0895760:three_prime_UTR 50.0%
AAGCTATGGGAAATGAGGCG+TGG + chr6_1:84246179-84246198 Msa0895760:three_prime_UTR 50.0%
TATGGGAAATGAGGCGTGGA+AGG + chr6_1:84246183-84246202 Msa0895760:three_prime_UTR 50.0%
AATGAGGCGTGGAAGGAAGA+TGG + chr6_1:84246190-84246209 Msa0895760:three_prime_UTR 50.0%
!! AGGAGAGTTGCTGCTTTGAG+TGG + chr6_1:84246216-84246235 Msa0895760:three_prime_UTR 50.0%
!!! GCATCTAGGCCAGGCTTTTT+TGG + chr6_1:84246254-84246273 Msa0895760:three_prime_UTR 50.0%
! GGTTGGCCAGTGTTGAAGAA+AGG + chr6_1:84246336-84246355 Msa0895760:three_prime_UTR 50.0%
! TCTGTTGCTAATTGGTGCCC+TGG - chr6_1:84246372-84246391 None:intergenic 50.0%
CTTCTCTGTTCAGGGGACTT+GGG - chr6_1:84246398-84246417 None:intergenic 50.0%
GGAAGCCACCATAAGAGCAA+AGG - chr6_1:84246726-84246745 None:intergenic 50.0%
! GAGGCTCTAACTTCTCTTCC+TGG - chr6_1:84247249-84247268 None:intergenic 50.0%
CAACTGATGACCCGAGGATA+AGG + chr6_1:84247278-84247297 Msa0895760:intron 50.0%
! GGTTCAAGAGCCTTATCCTC+GGG - chr6_1:84247291-84247310 None:intergenic 50.0%
! TTCTGCCAATAGAGGCACAG+TGG - chr6_1:84247709-84247728 None:intergenic 50.0%
ACTGTGCCTCTATTGGCAGA+AGG + chr6_1:84247708-84247727 Msa0895760:three_prime_UTR 50.0%
CTGTGCCTCTATTGGCAGAA+GGG + chr6_1:84247709-84247728 Msa0895760:three_prime_UTR 50.0%
TGTGCCTCTATTGGCAGAAG+GGG + chr6_1:84247710-84247729 Msa0895760:three_prime_UTR 50.0%
TCATCCCCTTCTGCCAATAG+AGG - chr6_1:84247717-84247736 None:intergenic 50.0%
ATTTGCCTCTGACTCCAACG+AGG + chr6_1:84247878-84247897 Msa0895760:three_prime_UTR 50.0%
CATTACCTCGTTGGAGTCAG+AGG - chr6_1:84247886-84247905 None:intergenic 50.0%
GGCAATGATCACACGGTTAC+AGG + chr6_1:84248049-84248068 Msa0895760:three_prime_UTR 50.0%
AGAACAGGCGGAGTATGATG+AGG + chr6_1:84248123-84248142 Msa0895760:three_prime_UTR 50.0%
GCTCAATGAAGCAAGAGGAG+AGG + chr6_1:84248285-84248304 Msa0895760:three_prime_UTR 50.0%
GCACGAATACTCCTCGGATT+AGG - chr6_1:84248631-84248650 None:intergenic 50.0%
AGGACGGGAACGAGAGAAAG+AGG + chr6_1:84243984-84244003 Msa0895760:five_prime_UTR 55.0%
GGACGGGAACGAGAGAAAGA+GGG + chr6_1:84243985-84244004 Msa0895760:five_prime_UTR 55.0%
GACGGGAACGAGAGAAAGAG+GGG + chr6_1:84243986-84244005 Msa0895760:five_prime_UTR 55.0%
ACGGGAACGAGAGAAAGAGG+GGG + chr6_1:84243987-84244006 Msa0895760:five_prime_UTR 55.0%
ACGAGAGAAAGAGGGGGTTG+AGG + chr6_1:84243993-84244012 Msa0895760:five_prime_UTR 55.0%
CGAGAGAAAGAGGGGGTTGA+GGG + chr6_1:84243994-84244013 Msa0895760:five_prime_UTR 55.0%
GAGAGAAAGAGGGGGTTGAG+GGG + chr6_1:84243995-84244014 Msa0895760:five_prime_UTR 55.0%
AGAGAAAGAGGGGGTTGAGG+GGG + chr6_1:84243996-84244015 Msa0895760:five_prime_UTR 55.0%
GAGAGAGAGGGATGGAGTAC+CGG + chr6_1:84244028-84244047 Msa0895760:five_prime_UTR 55.0%
! AGTACCGGAGAAGAAGTCGC+CGG + chr6_1:84244043-84244062 Msa0895760:five_prime_UTR 55.0%
ACCACCGGCGAATTCTTCTC+CGG - chr6_1:84244118-84244137 None:intergenic 55.0%
GAGAAGAATTCGCCGGTGGT+GGG + chr6_1:84244118-84244137 Msa0895760:five_prime_UTR 55.0%
!! ATTGCAGGAGCATCTAGGCC+AGG + chr6_1:84246245-84246264 Msa0895760:three_prime_UTR 55.0%
CCTTCTCTGTTCAGGGGACT+TGG - chr6_1:84246399-84246418 None:intergenic 55.0%
CCAAGTCCCCTGAACAGAGA+AGG + chr6_1:84246396-84246415 Msa0895760:three_prime_UTR 55.0%
CTGAGAAAGCAGCAGTGCAG+TGG + chr6_1:84248072-84248091 Msa0895760:three_prime_UTR 55.0%
GGTGTCAGACACCTAATCCG+AGG + chr6_1:84248617-84248636 Msa0895760:three_prime_UTR 55.0%
CGGGAACGGGAGAAAGAAGG+GGG + chr6_1:84243942-84243961 Msa0895760:five_prime_UTR 60.0%
GGGAGTGGGAGAGAGAGAGA+GGG + chr6_1:84244016-84244035 Msa0895760:five_prime_UTR 60.0%
GTGGGAGAGAGAGAGAGGGA+TGG + chr6_1:84244020-84244039 Msa0895760:five_prime_UTR 60.0%
ACCGGAGAAGAAGTAGCCGG+CGG + chr6_1:84244080-84244099 Msa0895760:five_prime_UTR 60.0%
! ACCGCCGGCTACTTCTTCTC+CGG - chr6_1:84244084-84244103 None:intergenic 60.0%
GAGAAGAAGTAGCCGGCGGT+GGG + chr6_1:84244084-84244103 Msa0895760:five_prime_UTR 60.0%
ACCGGAGAAGAATTCGCCGG+TGG + chr6_1:84244114-84244133 Msa0895760:five_prime_UTR 60.0%
GGAGAAGAATTCGCCGGTGG+TGG + chr6_1:84244117-84244136 Msa0895760:five_prime_UTR 60.0%
!! GAATTCGCCGGTGGTGGGAT+TGG + chr6_1:84244123-84244142 Msa0895760:five_prime_UTR 60.0%
! CAAAGCTGTGGTGGAGACGC+CGG + chr6_1:84244841-84244860 Msa0895760:CDS 60.0%
!!! GCCGGTGGTTTTGGCTAACG+TGG + chr6_1:84244859-84244878 Msa0895760:intron 60.0%
GCGTGGAAGGAAGATGGTGC+AGG + chr6_1:84246196-84246215 Msa0895760:three_prime_UTR 60.0%
AAGAGGGGGTTGAGGGGGAG+TGG + chr6_1:84244001-84244020 Msa0895760:five_prime_UTR 65.0%
AGAGGGGGTTGAGGGGGAGT+GGG + chr6_1:84244002-84244021 Msa0895760:five_prime_UTR 65.0%
GGGGAGTGGGAGAGAGAGAG+AGG + chr6_1:84244015-84244034 Msa0895760:five_prime_UTR 65.0%
ACCGGAGAAGAAGTCGCCGG+CGG + chr6_1:84244046-84244065 Msa0895760:five_prime_UTR 65.0%
ACCGCCGGCGACTTCTTCTC+CGG - chr6_1:84244050-84244069 None:intergenic 65.0%
AAGAAGTCGCCGGCGGTGGA+AGG + chr6_1:84244053-84244072 Msa0895760:five_prime_UTR 65.0%
AGAAGTCGCCGGCGGTGGAA+GGG + chr6_1:84244054-84244073 Msa0895760:five_prime_UTR 65.0%
GGAGAAGAAGTAGCCGGCGG+TGG + chr6_1:84244083-84244102 Msa0895760:five_prime_UTR 65.0%
AAGAAGTAGCCGGCGGTGGG+AGG + chr6_1:84244087-84244106 Msa0895760:five_prime_UTR 65.0%
AGAAGTAGCCGGCGGTGGGA+GGG + chr6_1:84244088-84244107 Msa0895760:five_prime_UTR 65.0%
! GGTGGAGACGCCGGTGGTTT+TGG + chr6_1:84244850-84244869 Msa0895760:intron 65.0%
CGGCGTGTCTGTGTCGTGTC+TGG - chr6_1:84248545-84248564 None:intergenic 65.0%
GGAGAAGAAGTCGCCGGCGG+TGG + chr6_1:84244049-84244068 Msa0895760:five_prime_UTR 70.0%
CCGGTACTCCCTTCCACCGC+CGG - chr6_1:84244065-84244084 None:intergenic 70.0%
! CCGGCGGTGGAAGGGAGTAC+CGG + chr6_1:84244062-84244081 Msa0895760:five_prime_UTR 70.0%
! AGCTGTGGTGGAGACGCCGG+TGG + chr6_1:84244844-84244863 Msa0895760:intron 70.0%
CCGGTACTCCCTCCCACCGC+CGG - chr6_1:84244099-84244118 None:intergenic 75.0%
! CCGGCGGTGGGAGGGAGTAC+CGG + chr6_1:84244096-84244115 Msa0895760:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 84243942 84248895 84243942 ID=Msa0895760;Name=Msa0895760
chr6_1 mRNA 84243942 84248895 84243942 ID=Msa0895760-mRNA-1;Parent=Msa0895760;Name=Msa0895760-mRNA-1;_AED=0.07;_eAED=0.07;_QI=226|0.90|0.91|1|0.45|0.58|12|2158|88
chr6_1 exon 84243942 84244199 84243942 ID=Msa0895760-mRNA-1:exon:14233;Parent=Msa0895760-mRNA-1
chr6_1 exon 84244674 84244707 84244674 ID=Msa0895760-mRNA-1:exon:14234;Parent=Msa0895760-mRNA-1
chr6_1 exon 84244793 84244862 84244793 ID=Msa0895760-mRNA-1:exon:14235;Parent=Msa0895760-mRNA-1
chr6_1 exon 84245410 84245545 84245410 ID=Msa0895760-mRNA-1:exon:14236;Parent=Msa0895760-mRNA-1
chr6_1 exon 84245643 84245705 84245643 ID=Msa0895760-mRNA-1:exon:14237;Parent=Msa0895760-mRNA-1
chr6_1 exon 84245999 84246036 84245999 ID=Msa0895760-mRNA-1:exon:14238;Parent=Msa0895760-mRNA-1
chr6_1 exon 84246142 84246457 84246142 ID=Msa0895760-mRNA-1:exon:14239;Parent=Msa0895760-mRNA-1
chr6_1 exon 84246692 84246864 84246692 ID=Msa0895760-mRNA-1:exon:14240;Parent=Msa0895760-mRNA-1
chr6_1 exon 84246973 84247257 84246973 ID=Msa0895760-mRNA-1:exon:14241;Parent=Msa0895760-mRNA-1
chr6_1 exon 84247331 84247361 84247331 ID=Msa0895760-mRNA-1:exon:14242;Parent=Msa0895760-mRNA-1
chr6_1 exon 84247521 84247556 84247521 ID=Msa0895760-mRNA-1:exon:14243;Parent=Msa0895760-mRNA-1
chr6_1 exon 84247685 84248895 84247685 ID=Msa0895760-mRNA-1:exon:14244;Parent=Msa0895760-mRNA-1
chr6_1 five_prime_UTR 84243942 84244167 84243942 ID=Msa0895760-mRNA-1:five_prime_utr;Parent=Msa0895760-mRNA-1
chr6_1 CDS 84244168 84244199 84244168 ID=Msa0895760-mRNA-1:cds;Parent=Msa0895760-mRNA-1
chr6_1 CDS 84244674 84244707 84244674 ID=Msa0895760-mRNA-1:cds;Parent=Msa0895760-mRNA-1
chr6_1 CDS 84244793 84244862 84244793 ID=Msa0895760-mRNA-1:cds;Parent=Msa0895760-mRNA-1
chr6_1 CDS 84245410 84245540 84245410 ID=Msa0895760-mRNA-1:cds;Parent=Msa0895760-mRNA-1
chr6_1 three_prime_UTR 84245541 84245545 84245541 ID=Msa0895760-mRNA-1:three_prime_utr;Parent=Msa0895760-mRNA-1
chr6_1 three_prime_UTR 84245643 84245705 84245643 ID=Msa0895760-mRNA-1:three_prime_utr;Parent=Msa0895760-mRNA-1
chr6_1 three_prime_UTR 84245999 84246036 84245999 ID=Msa0895760-mRNA-1:three_prime_utr;Parent=Msa0895760-mRNA-1
chr6_1 three_prime_UTR 84246142 84246457 84246142 ID=Msa0895760-mRNA-1:three_prime_utr;Parent=Msa0895760-mRNA-1
chr6_1 three_prime_UTR 84246692 84246864 84246692 ID=Msa0895760-mRNA-1:three_prime_utr;Parent=Msa0895760-mRNA-1
chr6_1 three_prime_UTR 84246973 84247257 84246973 ID=Msa0895760-mRNA-1:three_prime_utr;Parent=Msa0895760-mRNA-1
chr6_1 three_prime_UTR 84247331 84247361 84247331 ID=Msa0895760-mRNA-1:three_prime_utr;Parent=Msa0895760-mRNA-1
chr6_1 three_prime_UTR 84247521 84247556 84247521 ID=Msa0895760-mRNA-1:three_prime_utr;Parent=Msa0895760-mRNA-1
chr6_1 three_prime_UTR 84247685 84248895 84247685 ID=Msa0895760-mRNA-1:three_prime_utr;Parent=Msa0895760-mRNA-1
Gene Sequence

>Msa0895760

ATGTTTGTTCTTCTTCTTCTTCTTCATCAAAGGAGTTTTTTTGGGATTGCTTCTGAGAATCGACAGACTTCCAACTTCCAGTTTGAATATCTGAGCTTTTATCTTGCGGAAATTCAAAGCTGTGGTGGAGACGCCGAGAATGCAAGTGATGGATGGTATCCTCCGGTGTCTCAAAATTCATGTAATCCTGGTTCAGTAATGGCGAATCTAAGGACGAGATCAGCTCCTGTTCGCACATTACTTGGAAGCAATGAGAATTTGGCCTAA
Protein sequence

>Msa0895760

MFVLLLLLHQRSFFGIASENRQTSNFQFEYLSFYLAEIQSCGGDAENASDGWYPPVSQNSCNPGSVMANLRTRSAPVRTLLGSNENLA*