Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738250 | XP_017430516.1 | 72.881 | 59 | 13 | 1 | 102 | 157 | 2 | 60 | 2.83e-16 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738250 | A0A0S3RKC7 | 72.881 | 59 | 13 | 1 | 102 | 157 | 2 | 60 | 1.35e-16 | 81.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0701010 | Msa0738250 | 0.801610 | 8.303547e-49 | -8.615850e-47 |
| Msa0353540 | Msa0738250 | 0.802947 | 4.405054e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0738250 | MtrunA17_Chr1g0193951 | 76.271 | 59 | 10 | 2 | 102 | 157 | 2 | 59 | 3.30e-20 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 41 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAAGTATGATCGGAATT+TGG | 0.281795 | 5_1:+55972100 | Msa0738250:CDS |
| TGCTACGCCCGATTCTCTTT+TGG | 0.329135 | 5_1:-55971514 | None:intergenic |
| GGAATGGGCTATGTACGTTC+TGG | 0.336202 | 5_1:+55972071 | Msa0738250:CDS |
| TGAATGTCAAGTATTCTCTA+AGG | 0.353395 | 5_1:+55971607 | Msa0738250:CDS |
| ATGATCGGAATTTGGATGTT+GGG | 0.372225 | 5_1:+55972108 | Msa0738250:CDS |
| GGTCTGTATCATTGATCATA+TGG | 0.390725 | 5_1:+55972300 | Msa0738250:CDS |
| GAATGGGCTATGTACGTTCT+GGG | 0.394056 | 5_1:+55972072 | Msa0738250:CDS |
| CAGCTAAGGGAGTGCGGAAT+GGG | 0.421879 | 5_1:+55972056 | Msa0738250:intron |
| AAGGCGATATTGTGTATTGT+AGG | 0.424031 | 5_1:+55971548 | Msa0738250:CDS |
| AACCATTGTTGACAGGAGAA+TGG | 0.433101 | 5_1:-55973492 | None:intergenic |
| ACCATTGTTGACAGGAGAAT+GGG | 0.468871 | 5_1:-55973491 | None:intergenic |
| GAATACCGCCAAAAGAGAAT+CGG | 0.472102 | 5_1:+55971506 | Msa0738250:intron |
| AGAATCGGGCGTAGCATCAT+CGG | 0.472459 | 5_1:+55971521 | Msa0738250:CDS |
| GCAGCTAAGGGAGTGCGGAA+TGG | 0.484437 | 5_1:+55972055 | Msa0738250:intron |
| TATGATCGGAATTTGGATGT+TGG | 0.494321 | 5_1:+55972107 | Msa0738250:CDS |
| CTCCTTGAACCATTGTTGAC+AGG | 0.501496 | 5_1:-55973499 | None:intergenic |
| CTCCTGTCAACAATGGTTCA+AGG | 0.504470 | 5_1:+55973497 | Msa0738250:CDS |
| TGATCGGAATTTGGATGTTG+GGG | 0.505076 | 5_1:+55972109 | Msa0738250:CDS |
| AATACCGCCAAAAGAGAATC+GGG | 0.506658 | 5_1:+55971507 | Msa0738250:CDS |
| GTCTGTATCATTGATCATAT+GGG | 0.535363 | 5_1:+55972301 | Msa0738250:CDS |
| GTGAGAATTGTTTCAATGGG+AGG | 0.545330 | 5_1:+55971303 | None:intergenic |
| CACATTGTATAATTCCTCCA+AGG | 0.548699 | 5_1:-55973578 | None:intergenic |
| GCCCATTCTCCTGTCAACAA+TGG | 0.550621 | 5_1:+55973490 | Msa0738250:CDS |
| AATGAAGATAGAGAAATCCT+TGG | 0.554986 | 5_1:+55973561 | Msa0738250:CDS |
| GAAGATAGAGAAATCCTTGG+AGG | 0.559138 | 5_1:+55973564 | Msa0738250:CDS |
| AGGCGATATTGTGTATTGTA+GGG | 0.562828 | 5_1:+55971549 | Msa0738250:CDS |
| GGAATTATACAATGTGAAGG+TGG | 0.563006 | 5_1:+55973585 | Msa0738250:CDS |
| GCGTGAATAGTTTCGTGAAG+TGG | 0.565028 | 5_1:+55972323 | Msa0738250:CDS |
| ATATTGTGTATTGTAGGGTG+TGG | 0.568525 | 5_1:+55971554 | Msa0738250:CDS |
| TATTGTGTATTGTAGGGTGT+GGG | 0.568841 | 5_1:+55971555 | Msa0738250:CDS |
| GCGTAGCATCATCGGAGGGA+AGG | 0.581318 | 5_1:+55971529 | Msa0738250:CDS |
| AATGGGCTATGTACGTTCTG+GGG | 0.591650 | 5_1:+55972073 | Msa0738250:CDS |
| AAGAGTGATGATGTGCAGAA+TGG | 0.593364 | 5_1:+55972268 | Msa0738250:intron |
| GGGCTATGTACGTTCTGGGG+TGG | 0.609071 | 5_1:+55972076 | Msa0738250:CDS |
| GGGTGGTGTTGAAGTATGAT+CGG | 0.616910 | 5_1:+55972093 | Msa0738250:CDS |
| GGAGGAATTATACAATGTGA+AGG | 0.618744 | 5_1:+55973582 | Msa0738250:CDS |
| CTGGTGCAGCTAAGGGAGTG+CGG | 0.630712 | 5_1:+55972050 | Msa0738250:intron |
| ATCGGGCGTAGCATCATCGG+AGG | 0.642414 | 5_1:+55971524 | Msa0738250:CDS |
| GTTGACAGGAGAATGGGCGA+AGG | 0.657019 | 5_1:-55973485 | None:intergenic |
| TCGGGCGTAGCATCATCGGA+GGG | 0.689359 | 5_1:+55971525 | Msa0738250:CDS |
| TGTGCAGAATGGCAGTATAG+CGG | 0.695239 | 5_1:+55972279 | Msa0738250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATAGATATTTTATCGTTT+GGG | + | chr5_1:55972368-55972387 | Msa0738250:intron | 20.0% |
| !!! | AAATACCCTTTTTTTTTTGA+AGG | + | chr5_1:55972673-55972692 | Msa0738250:intron | 20.0% |
| !! | CAATTACATAAAGAGTAAAT+AGG | - | chr5_1:55972712-55972731 | None:intergenic | 20.0% |
| !!! | AATTTTCTTACTTTAGGTTT+TGG | - | chr5_1:55972836-55972855 | None:intergenic | 20.0% |
| !! | AAAACCTAAAGTAAGAAAAT+TGG | + | chr5_1:55972835-55972854 | Msa0738250:intron | 20.0% |
| !!! | GTATTTTGACTTCATTAAAT+CGG | - | chr5_1:55973221-55973240 | None:intergenic | 20.0% |
| !! | TTTGAGTATAAAATGTAAAC+AGG | + | chr5_1:55973436-55973455 | Msa0738250:intron | 20.0% |
| !!! | GTATAGATATTTTATCGTTT+GGG | + | chr5_1:55972368-55972387 | Msa0738250:intron | 20.0% |
| !!! | AAATACCCTTTTTTTTTTGA+AGG | + | chr5_1:55972673-55972692 | Msa0738250:intron | 20.0% |
| !! | CAATTACATAAAGAGTAAAT+AGG | - | chr5_1:55972712-55972731 | None:intergenic | 20.0% |
| !!! | AATTTTCTTACTTTAGGTTT+TGG | - | chr5_1:55972836-55972855 | None:intergenic | 20.0% |
| !! | AAAACCTAAAGTAAGAAAAT+TGG | + | chr5_1:55972835-55972854 | Msa0738250:intron | 20.0% |
| !!! | GTATTTTGACTTCATTAAAT+CGG | - | chr5_1:55973221-55973240 | None:intergenic | 20.0% |
| !! | TTTGAGTATAAAATGTAAAC+AGG | + | chr5_1:55973436-55973455 | Msa0738250:intron | 20.0% |
| ! | GATAGACAAAATTGTTTGAA+AGG | + | chr5_1:55971384-55971403 | Msa0738250:intron | 25.0% |
| !! | CCATCACTTATGTAATTTTT+CGG | + | chr5_1:55971678-55971697 | Msa0738250:intron | 25.0% |
| !! | CATCACTTATGTAATTTTTC+GGG | + | chr5_1:55971679-55971698 | Msa0738250:intron | 25.0% |
| !! | TTTTCTAGGTAAAGCAATTT+TGG | + | chr5_1:55971777-55971796 | Msa0738250:intron | 25.0% |
| !! | TGGCTGTTATTTATTGTTAT+CGG | + | chr5_1:55971955-55971974 | Msa0738250:intron | 25.0% |
| ! | ACATCATCACTCTTAAAATA+AGG | - | chr5_1:55972262-55972281 | None:intergenic | 25.0% |
| !! | GGTATAGATATTTTATCGTT+TGG | + | chr5_1:55972367-55972386 | Msa0738250:intron | 25.0% |
| ! | AAGTCTGTCAAAGAAAAAAA+CGG | - | chr5_1:55972432-55972451 | None:intergenic | 25.0% |
| !!! | ACCACTATTTTTATTTCAAG+GGG | - | chr5_1:55972532-55972551 | None:intergenic | 25.0% |
| !!! | CACCACTATTTTTATTTCAA+GGG | - | chr5_1:55972533-55972552 | None:intergenic | 25.0% |
| ! | TCCTTCCTTCAAAAAAAAAA+GGG | - | chr5_1:55972681-55972700 | None:intergenic | 25.0% |
| ! | ATCCTTCCTTCAAAAAAAAA+AGG | - | chr5_1:55972682-55972701 | None:intergenic | 25.0% |
| ! | TACTCTTTATGTAATTGTTG+TGG | + | chr5_1:55972715-55972734 | Msa0738250:intron | 25.0% |
| ! | ACTCTTTATGTAATTGTTGT+GGG | + | chr5_1:55972716-55972735 | Msa0738250:intron | 25.0% |
| !! | GAATCCAATTTTCTTACTTT+AGG | - | chr5_1:55972842-55972861 | None:intergenic | 25.0% |
| ! | GATGTTTGATCTTTATCTAA+TGG | + | chr5_1:55972985-55973004 | Msa0738250:intron | 25.0% |
| !!! | TGGTAAATTGTTTCCTTTTT+TGG | + | chr5_1:55973048-55973067 | Msa0738250:intron | 25.0% |
| !!! | GGTAAATTGTTTCCTTTTTT+GGG | + | chr5_1:55973049-55973068 | Msa0738250:intron | 25.0% |
| ! | GGAAACGATTTAATAAATAC+CGG | + | chr5_1:55973168-55973187 | Msa0738250:intron | 25.0% |
| ! | AATCAAGGGATTTCATAAAT+TGG | - | chr5_1:55973262-55973281 | None:intergenic | 25.0% |
| ! | GATAGACAAAATTGTTTGAA+AGG | + | chr5_1:55971384-55971403 | Msa0738250:intron | 25.0% |
| !! | CCATCACTTATGTAATTTTT+CGG | + | chr5_1:55971678-55971697 | Msa0738250:intron | 25.0% |
| !! | CATCACTTATGTAATTTTTC+GGG | + | chr5_1:55971679-55971698 | Msa0738250:intron | 25.0% |
| !! | TTTTCTAGGTAAAGCAATTT+TGG | + | chr5_1:55971777-55971796 | Msa0738250:intron | 25.0% |
| !! | TGGCTGTTATTTATTGTTAT+CGG | + | chr5_1:55971955-55971974 | Msa0738250:intron | 25.0% |
| ! | ACATCATCACTCTTAAAATA+AGG | - | chr5_1:55972262-55972281 | None:intergenic | 25.0% |
| !! | GGTATAGATATTTTATCGTT+TGG | + | chr5_1:55972367-55972386 | Msa0738250:intron | 25.0% |
| ! | AAGTCTGTCAAAGAAAAAAA+CGG | - | chr5_1:55972432-55972451 | None:intergenic | 25.0% |
| !!! | ACCACTATTTTTATTTCAAG+GGG | - | chr5_1:55972532-55972551 | None:intergenic | 25.0% |
| !!! | CACCACTATTTTTATTTCAA+GGG | - | chr5_1:55972533-55972552 | None:intergenic | 25.0% |
| ! | TCCTTCCTTCAAAAAAAAAA+GGG | - | chr5_1:55972681-55972700 | None:intergenic | 25.0% |
| ! | ATCCTTCCTTCAAAAAAAAA+AGG | - | chr5_1:55972682-55972701 | None:intergenic | 25.0% |
| ! | TACTCTTTATGTAATTGTTG+TGG | + | chr5_1:55972715-55972734 | Msa0738250:intron | 25.0% |
| ! | ACTCTTTATGTAATTGTTGT+GGG | + | chr5_1:55972716-55972735 | Msa0738250:intron | 25.0% |
| !! | GAATCCAATTTTCTTACTTT+AGG | - | chr5_1:55972842-55972861 | None:intergenic | 25.0% |
| ! | GATGTTTGATCTTTATCTAA+TGG | + | chr5_1:55972985-55973004 | Msa0738250:intron | 25.0% |
| !!! | TGGTAAATTGTTTCCTTTTT+TGG | + | chr5_1:55973048-55973067 | Msa0738250:intron | 25.0% |
| !!! | GGTAAATTGTTTCCTTTTTT+GGG | + | chr5_1:55973049-55973068 | Msa0738250:intron | 25.0% |
| ! | GGAAACGATTTAATAAATAC+CGG | + | chr5_1:55973168-55973187 | Msa0738250:intron | 25.0% |
| ! | AATCAAGGGATTTCATAAAT+TGG | - | chr5_1:55973262-55973281 | None:intergenic | 25.0% |
| TGAATGTCAAGTATTCTCTA+AGG | + | chr5_1:55971607-55971626 | Msa0738250:CDS | 30.0% | |
| !! | TCTAAGGTTTGACTTGATTT+AGG | + | chr5_1:55971623-55971642 | Msa0738250:intron | 30.0% |
| !! | CTAAGGTTTGACTTGATTTA+GGG | + | chr5_1:55971624-55971643 | Msa0738250:intron | 30.0% |
| !! | TAAGGTTTGACTTGATTTAG+GGG | + | chr5_1:55971625-55971644 | Msa0738250:intron | 30.0% |
| CCGAAAAATTACATAAGTGA+TGG | - | chr5_1:55971681-55971700 | None:intergenic | 30.0% | |
| ! | CGTAATCATGAGATTTTTCT+AGG | + | chr5_1:55971763-55971782 | Msa0738250:intron | 30.0% |
| TCTGTTATTCCATATCATAG+TGG | + | chr5_1:55971866-55971885 | Msa0738250:intron | 30.0% | |
| ! | GGCTGTTATTTATTGTTATC+GGG | + | chr5_1:55971956-55971975 | Msa0738250:intron | 30.0% |
| !!! | TTTGACAGAGGAATTTTTTC+TGG | + | chr5_1:55972031-55972050 | Msa0738250:intron | 30.0% |
| ! | AGGTTGATCTTATGTTTGAA+GGG | + | chr5_1:55972144-55972163 | Msa0738250:intron | 30.0% |
| !! | AAGGCATTTACATTTTGCTT+TGG | + | chr5_1:55972199-55972218 | Msa0738250:intron | 30.0% |
| GTCTGTATCATTGATCATAT+GGG | + | chr5_1:55972301-55972320 | Msa0738250:CDS | 30.0% | |
| ATAAACGCTACATAAGCATA+AGG | - | chr5_1:55972480-55972499 | None:intergenic | 30.0% | |
| TCCCCTTGAAATAAAAATAG+TGG | + | chr5_1:55972528-55972547 | Msa0738250:intron | 30.0% | |
| !!! | GCACCACTATTTTTATTTCA+AGG | - | chr5_1:55972534-55972553 | None:intergenic | 30.0% |
| ! | TTTTCATCCTTGAAACTGTA+AGG | - | chr5_1:55972656-55972675 | None:intergenic | 30.0% |
| !!! | ACCCTTTTTTTTTTGAAGGA+AGG | + | chr5_1:55972677-55972696 | Msa0738250:intron | 30.0% |
| CCATCTAAATATCCCAAAAA+AGG | - | chr5_1:55973064-55973083 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTGGGATATTTAGA+TGG | + | chr5_1:55973061-55973080 | Msa0738250:intron | 30.0% |
| TTGGGATATTTAGATGGAAA+TGG | + | chr5_1:55973067-55973086 | Msa0738250:intron | 30.0% | |
| ! | GACACAACAAAACCTATTTT+AGG | + | chr5_1:55973089-55973108 | Msa0738250:intron | 30.0% |
| !! | CAACAAAACCTATTTTAGGA+AGG | + | chr5_1:55973093-55973112 | Msa0738250:intron | 30.0% |
| CTATAGAATCAGCAAAATGT+TGG | + | chr5_1:55973147-55973166 | Msa0738250:intron | 30.0% | |
| AAATCGGCATTAAATTAACG+TGG | - | chr5_1:55973205-55973224 | None:intergenic | 30.0% | |
| TCCCAAAATGTTATGCTTAT+GGG | + | chr5_1:55973323-55973342 | Msa0738250:intron | 30.0% | |
| ! | TCCCATAAGCATAACATTTT+GGG | - | chr5_1:55973327-55973346 | None:intergenic | 30.0% |
| ! | TTCCCATAAGCATAACATTT+TGG | - | chr5_1:55973328-55973347 | None:intergenic | 30.0% |
| GTATAAAATGTAAACAGGCA+CGG | + | chr5_1:55973441-55973460 | Msa0738250:intron | 30.0% | |
| AATGAAGATAGAGAAATCCT+TGG | + | chr5_1:55973561-55973580 | Msa0738250:CDS | 30.0% | |
| TGAATGTCAAGTATTCTCTA+AGG | + | chr5_1:55971607-55971626 | Msa0738250:CDS | 30.0% | |
| !! | TCTAAGGTTTGACTTGATTT+AGG | + | chr5_1:55971623-55971642 | Msa0738250:intron | 30.0% |
| !! | CTAAGGTTTGACTTGATTTA+GGG | + | chr5_1:55971624-55971643 | Msa0738250:intron | 30.0% |
| !! | TAAGGTTTGACTTGATTTAG+GGG | + | chr5_1:55971625-55971644 | Msa0738250:intron | 30.0% |
| CCGAAAAATTACATAAGTGA+TGG | - | chr5_1:55971681-55971700 | None:intergenic | 30.0% | |
| ! | CGTAATCATGAGATTTTTCT+AGG | + | chr5_1:55971763-55971782 | Msa0738250:intron | 30.0% |
| TCTGTTATTCCATATCATAG+TGG | + | chr5_1:55971866-55971885 | Msa0738250:intron | 30.0% | |
| ! | GGCTGTTATTTATTGTTATC+GGG | + | chr5_1:55971956-55971975 | Msa0738250:intron | 30.0% |
| !!! | TTTGACAGAGGAATTTTTTC+TGG | + | chr5_1:55972031-55972050 | Msa0738250:intron | 30.0% |
| ! | AGGTTGATCTTATGTTTGAA+GGG | + | chr5_1:55972144-55972163 | Msa0738250:intron | 30.0% |
| !! | AAGGCATTTACATTTTGCTT+TGG | + | chr5_1:55972199-55972218 | Msa0738250:intron | 30.0% |
| GTCTGTATCATTGATCATAT+GGG | + | chr5_1:55972301-55972320 | Msa0738250:CDS | 30.0% | |
| ATAAACGCTACATAAGCATA+AGG | - | chr5_1:55972480-55972499 | None:intergenic | 30.0% | |
| TCCCCTTGAAATAAAAATAG+TGG | + | chr5_1:55972528-55972547 | Msa0738250:intron | 30.0% | |
| !!! | GCACCACTATTTTTATTTCA+AGG | - | chr5_1:55972534-55972553 | None:intergenic | 30.0% |
| ! | TTTTCATCCTTGAAACTGTA+AGG | - | chr5_1:55972656-55972675 | None:intergenic | 30.0% |
| !!! | ACCCTTTTTTTTTTGAAGGA+AGG | + | chr5_1:55972677-55972696 | Msa0738250:intron | 30.0% |
| CCATCTAAATATCCCAAAAA+AGG | - | chr5_1:55973064-55973083 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTGGGATATTTAGA+TGG | + | chr5_1:55973061-55973080 | Msa0738250:intron | 30.0% |
| TTGGGATATTTAGATGGAAA+TGG | + | chr5_1:55973067-55973086 | Msa0738250:intron | 30.0% | |
| ! | GACACAACAAAACCTATTTT+AGG | + | chr5_1:55973089-55973108 | Msa0738250:intron | 30.0% |
| !! | CAACAAAACCTATTTTAGGA+AGG | + | chr5_1:55973093-55973112 | Msa0738250:intron | 30.0% |
| CTATAGAATCAGCAAAATGT+TGG | + | chr5_1:55973147-55973166 | Msa0738250:intron | 30.0% | |
| AAATCGGCATTAAATTAACG+TGG | - | chr5_1:55973205-55973224 | None:intergenic | 30.0% | |
| TCCCAAAATGTTATGCTTAT+GGG | + | chr5_1:55973323-55973342 | Msa0738250:intron | 30.0% | |
| ! | TCCCATAAGCATAACATTTT+GGG | - | chr5_1:55973327-55973346 | None:intergenic | 30.0% |
| ! | TTCCCATAAGCATAACATTT+TGG | - | chr5_1:55973328-55973347 | None:intergenic | 30.0% |
| GTATAAAATGTAAACAGGCA+CGG | + | chr5_1:55973441-55973460 | Msa0738250:intron | 30.0% | |
| AATGAAGATAGAGAAATCCT+TGG | + | chr5_1:55973561-55973580 | Msa0738250:CDS | 30.0% | |
| AAGGCGATATTGTGTATTGT+AGG | + | chr5_1:55971548-55971567 | Msa0738250:CDS | 35.0% | |
| AGGCGATATTGTGTATTGTA+GGG | + | chr5_1:55971549-55971568 | Msa0738250:CDS | 35.0% | |
| ATATTGTGTATTGTAGGGTG+TGG | + | chr5_1:55971554-55971573 | Msa0738250:CDS | 35.0% | |
| TATTGTGTATTGTAGGGTGT+GGG | + | chr5_1:55971555-55971574 | Msa0738250:CDS | 35.0% | |
| ! | GTATTCGTTTTGCTGCATAA+TGG | + | chr5_1:55971649-55971668 | Msa0738250:intron | 35.0% |
| !!! | AATTTTTCGGGTCTAATCCA+AGG | + | chr5_1:55971691-55971710 | Msa0738250:intron | 35.0% |
| !!! | ATTTTTCGGGTCTAATCCAA+GGG | + | chr5_1:55971692-55971711 | Msa0738250:intron | 35.0% |
| ! | TGGAGAACAAATTTAGAACC+TGG | + | chr5_1:55971725-55971744 | Msa0738250:intron | 35.0% |
| AAGATGCAACTTTGATCTCT+TGG | + | chr5_1:55971815-55971834 | Msa0738250:intron | 35.0% | |
| CAACTTTGATCTCTTGGAAT+TGG | + | chr5_1:55971821-55971840 | Msa0738250:intron | 35.0% | |
| TTTGGTAGATTGTGAGGAAT+TGG | + | chr5_1:55971915-55971934 | Msa0738250:intron | 35.0% | |
| !!! | AATTTTTTCTGGTGCAGCTA+AGG | + | chr5_1:55972042-55972061 | Msa0738250:intron | 35.0% |
| !!! | ATTTTTTCTGGTGCAGCTAA+GGG | + | chr5_1:55972043-55972062 | Msa0738250:intron | 35.0% |
| GTTGAAGTATGATCGGAATT+TGG | + | chr5_1:55972100-55972119 | Msa0738250:CDS | 35.0% | |
| TATGATCGGAATTTGGATGT+TGG | + | chr5_1:55972107-55972126 | Msa0738250:CDS | 35.0% | |
| ATGATCGGAATTTGGATGTT+GGG | + | chr5_1:55972108-55972127 | Msa0738250:CDS | 35.0% | |
| !! | CAGGTTGATCTTATGTTTGA+AGG | + | chr5_1:55972143-55972162 | Msa0738250:intron | 35.0% |
| GGTTGATCTTATGTTTGAAG+GGG | + | chr5_1:55972145-55972164 | Msa0738250:intron | 35.0% | |
| GGTCTGTATCATTGATCATA+TGG | + | chr5_1:55972300-55972319 | Msa0738250:CDS | 35.0% | |
| TCGTTTGGGAATCATACTTA+AGG | + | chr5_1:55972382-55972401 | Msa0738250:intron | 35.0% | |
| CGTTTGGGAATCATACTTAA+GGG | + | chr5_1:55972383-55972402 | Msa0738250:intron | 35.0% | |
| ! | ATCGCTATTTCGCAAATTTG+AGG | + | chr5_1:55972614-55972633 | Msa0738250:intron | 35.0% |
| ! | AATTTTGTGAAGCCAGCTAA+GGG | - | chr5_1:55972813-55972832 | None:intergenic | 35.0% |
| TAAGTATGTGAGTCATCTGA+TGG | - | chr5_1:55972917-55972936 | None:intergenic | 35.0% | |
| TGATTATGCAGTGAGTTTGT+TGG | + | chr5_1:55973028-55973047 | Msa0738250:intron | 35.0% | |
| GTCTCTTTCCTTCCTAAAAT+AGG | - | chr5_1:55973104-55973123 | None:intergenic | 35.0% | |
| TAGGAAGGAAAGAGACTAAA+CGG | + | chr5_1:55973108-55973127 | Msa0738250:intron | 35.0% | |
| CACTACAATCAAGGAAAACA+CGG | - | chr5_1:55973293-55973312 | None:intergenic | 35.0% | |
| CTAGATTCTCACTACAATCA+AGG | - | chr5_1:55973302-55973321 | None:intergenic | 35.0% | |
| CTCCCAAAATGTTATGCTTA+TGG | + | chr5_1:55973322-55973341 | Msa0738250:intron | 35.0% | |
| TGTTATGCTTATGGGAATTG+AGG | + | chr5_1:55973331-55973350 | Msa0738250:intron | 35.0% | |
| AATTGAGGAGACAAATGTGT+TGG | + | chr5_1:55973346-55973365 | Msa0738250:intron | 35.0% | |
| CACATTGTATAATTCCTCCA+AGG | - | chr5_1:55973581-55973600 | None:intergenic | 35.0% | |
| GGAGGAATTATACAATGTGA+AGG | + | chr5_1:55973582-55973601 | Msa0738250:CDS | 35.0% | |
| GGAATTATACAATGTGAAGG+TGG | + | chr5_1:55973585-55973604 | Msa0738250:CDS | 35.0% | |
| AAGGCGATATTGTGTATTGT+AGG | + | chr5_1:55971548-55971567 | Msa0738250:CDS | 35.0% | |
| AGGCGATATTGTGTATTGTA+GGG | + | chr5_1:55971549-55971568 | Msa0738250:CDS | 35.0% | |
| ATATTGTGTATTGTAGGGTG+TGG | + | chr5_1:55971554-55971573 | Msa0738250:CDS | 35.0% | |
| TATTGTGTATTGTAGGGTGT+GGG | + | chr5_1:55971555-55971574 | Msa0738250:CDS | 35.0% | |
| ! | GTATTCGTTTTGCTGCATAA+TGG | + | chr5_1:55971649-55971668 | Msa0738250:intron | 35.0% |
| !!! | AATTTTTCGGGTCTAATCCA+AGG | + | chr5_1:55971691-55971710 | Msa0738250:intron | 35.0% |
| !!! | ATTTTTCGGGTCTAATCCAA+GGG | + | chr5_1:55971692-55971711 | Msa0738250:intron | 35.0% |
| ! | TGGAGAACAAATTTAGAACC+TGG | + | chr5_1:55971725-55971744 | Msa0738250:intron | 35.0% |
| AAGATGCAACTTTGATCTCT+TGG | + | chr5_1:55971815-55971834 | Msa0738250:intron | 35.0% | |
| CAACTTTGATCTCTTGGAAT+TGG | + | chr5_1:55971821-55971840 | Msa0738250:intron | 35.0% | |
| TTTGGTAGATTGTGAGGAAT+TGG | + | chr5_1:55971915-55971934 | Msa0738250:intron | 35.0% | |
| !!! | AATTTTTTCTGGTGCAGCTA+AGG | + | chr5_1:55972042-55972061 | Msa0738250:intron | 35.0% |
| !!! | ATTTTTTCTGGTGCAGCTAA+GGG | + | chr5_1:55972043-55972062 | Msa0738250:intron | 35.0% |
| GTTGAAGTATGATCGGAATT+TGG | + | chr5_1:55972100-55972119 | Msa0738250:CDS | 35.0% | |
| TATGATCGGAATTTGGATGT+TGG | + | chr5_1:55972107-55972126 | Msa0738250:CDS | 35.0% | |
| ATGATCGGAATTTGGATGTT+GGG | + | chr5_1:55972108-55972127 | Msa0738250:CDS | 35.0% | |
| !! | CAGGTTGATCTTATGTTTGA+AGG | + | chr5_1:55972143-55972162 | Msa0738250:intron | 35.0% |
| GGTTGATCTTATGTTTGAAG+GGG | + | chr5_1:55972145-55972164 | Msa0738250:intron | 35.0% | |
| GGTCTGTATCATTGATCATA+TGG | + | chr5_1:55972300-55972319 | Msa0738250:CDS | 35.0% | |
| TCGTTTGGGAATCATACTTA+AGG | + | chr5_1:55972382-55972401 | Msa0738250:intron | 35.0% | |
| CGTTTGGGAATCATACTTAA+GGG | + | chr5_1:55972383-55972402 | Msa0738250:intron | 35.0% | |
| ! | ATCGCTATTTCGCAAATTTG+AGG | + | chr5_1:55972614-55972633 | Msa0738250:intron | 35.0% |
| ! | AATTTTGTGAAGCCAGCTAA+GGG | - | chr5_1:55972813-55972832 | None:intergenic | 35.0% |
| TAAGTATGTGAGTCATCTGA+TGG | - | chr5_1:55972917-55972936 | None:intergenic | 35.0% | |
| TGATTATGCAGTGAGTTTGT+TGG | + | chr5_1:55973028-55973047 | Msa0738250:intron | 35.0% | |
| GTCTCTTTCCTTCCTAAAAT+AGG | - | chr5_1:55973104-55973123 | None:intergenic | 35.0% | |
| TAGGAAGGAAAGAGACTAAA+CGG | + | chr5_1:55973108-55973127 | Msa0738250:intron | 35.0% | |
| CACTACAATCAAGGAAAACA+CGG | - | chr5_1:55973293-55973312 | None:intergenic | 35.0% | |
| CTAGATTCTCACTACAATCA+AGG | - | chr5_1:55973302-55973321 | None:intergenic | 35.0% | |
| CTCCCAAAATGTTATGCTTA+TGG | + | chr5_1:55973322-55973341 | Msa0738250:intron | 35.0% | |
| TGTTATGCTTATGGGAATTG+AGG | + | chr5_1:55973331-55973350 | Msa0738250:intron | 35.0% | |
| AATTGAGGAGACAAATGTGT+TGG | + | chr5_1:55973346-55973365 | Msa0738250:intron | 35.0% | |
| CACATTGTATAATTCCTCCA+AGG | - | chr5_1:55973581-55973600 | None:intergenic | 35.0% | |
| GGAGGAATTATACAATGTGA+AGG | + | chr5_1:55973582-55973601 | Msa0738250:CDS | 35.0% | |
| GGAATTATACAATGTGAAGG+TGG | + | chr5_1:55973585-55973604 | Msa0738250:CDS | 35.0% | |
| AATCCCAGTGAGACTGTATT+CGG | + | chr5_1:55971409-55971428 | Msa0738250:intron | 40.0% | |
| TGAGAGACTTTGCTTAGTAG+CGG | + | chr5_1:55971456-55971475 | Msa0738250:intron | 40.0% | |
| GAATACCGCCAAAAGAGAAT+CGG | + | chr5_1:55971506-55971525 | Msa0738250:intron | 40.0% | |
| AATACCGCCAAAAGAGAATC+GGG | + | chr5_1:55971507-55971526 | Msa0738250:CDS | 40.0% | |
| !!! | TTTTTCGGGTCTAATCCAAG+GGG | + | chr5_1:55971693-55971712 | Msa0738250:intron | 40.0% |
| ATCTACCAAATCCCAAGCAA+GGG | - | chr5_1:55971905-55971924 | None:intergenic | 40.0% | |
| AATCTACCAAATCCCAAGCA+AGG | - | chr5_1:55971906-55971925 | None:intergenic | 40.0% | |
| ! | TTGGGATTTGGTAGATTGTG+AGG | + | chr5_1:55971909-55971928 | Msa0738250:intron | 40.0% |
| !! | GACTACTATAGCTTTGACAG+AGG | + | chr5_1:55972019-55972038 | Msa0738250:intron | 40.0% |
| TGATCGGAATTTGGATGTTG+GGG | + | chr5_1:55972109-55972128 | Msa0738250:CDS | 40.0% | |
| GCTTTGGTTGCTTACTGTAT+TGG | + | chr5_1:55972215-55972234 | Msa0738250:intron | 40.0% | |
| ! | AAGAGTGATGATGTGCAGAA+TGG | + | chr5_1:55972268-55972287 | Msa0738250:intron | 40.0% |
| !!! | AGCAGCTGTCTTGTTTTTCA+TGG | + | chr5_1:55972346-55972365 | Msa0738250:CDS | 40.0% |
| GATCGATCCTTACAGTTTCA+AGG | + | chr5_1:55972646-55972665 | Msa0738250:intron | 40.0% | |
| ATTGTTGTGGGTTCAGAAGT+AGG | + | chr5_1:55972728-55972747 | Msa0738250:intron | 40.0% | |
| ! | GAATTTTGTGAAGCCAGCTA+AGG | - | chr5_1:55972814-55972833 | None:intergenic | 40.0% |
| ACTTATGCAGTCACTGTAGT+CGG | + | chr5_1:55972881-55972900 | Msa0738250:intron | 40.0% | |
| ACCATTGTTGACAGGAGAAT+GGG | - | chr5_1:55973494-55973513 | None:intergenic | 40.0% | |
| AACCATTGTTGACAGGAGAA+TGG | - | chr5_1:55973495-55973514 | None:intergenic | 40.0% | |
| GAAGATAGAGAAATCCTTGG+AGG | + | chr5_1:55973564-55973583 | Msa0738250:CDS | 40.0% | |
| AATCCCAGTGAGACTGTATT+CGG | + | chr5_1:55971409-55971428 | Msa0738250:intron | 40.0% | |
| TGAGAGACTTTGCTTAGTAG+CGG | + | chr5_1:55971456-55971475 | Msa0738250:intron | 40.0% | |
| GAATACCGCCAAAAGAGAAT+CGG | + | chr5_1:55971506-55971525 | Msa0738250:intron | 40.0% | |
| AATACCGCCAAAAGAGAATC+GGG | + | chr5_1:55971507-55971526 | Msa0738250:CDS | 40.0% | |
| !!! | TTTTTCGGGTCTAATCCAAG+GGG | + | chr5_1:55971693-55971712 | Msa0738250:intron | 40.0% |
| ATCTACCAAATCCCAAGCAA+GGG | - | chr5_1:55971905-55971924 | None:intergenic | 40.0% | |
| AATCTACCAAATCCCAAGCA+AGG | - | chr5_1:55971906-55971925 | None:intergenic | 40.0% | |
| ! | TTGGGATTTGGTAGATTGTG+AGG | + | chr5_1:55971909-55971928 | Msa0738250:intron | 40.0% |
| !! | GACTACTATAGCTTTGACAG+AGG | + | chr5_1:55972019-55972038 | Msa0738250:intron | 40.0% |
| TGATCGGAATTTGGATGTTG+GGG | + | chr5_1:55972109-55972128 | Msa0738250:CDS | 40.0% | |
| GCTTTGGTTGCTTACTGTAT+TGG | + | chr5_1:55972215-55972234 | Msa0738250:intron | 40.0% | |
| ! | AAGAGTGATGATGTGCAGAA+TGG | + | chr5_1:55972268-55972287 | Msa0738250:intron | 40.0% |
| !!! | AGCAGCTGTCTTGTTTTTCA+TGG | + | chr5_1:55972346-55972365 | Msa0738250:CDS | 40.0% |
| GATCGATCCTTACAGTTTCA+AGG | + | chr5_1:55972646-55972665 | Msa0738250:intron | 40.0% | |
| ATTGTTGTGGGTTCAGAAGT+AGG | + | chr5_1:55972728-55972747 | Msa0738250:intron | 40.0% | |
| ! | GAATTTTGTGAAGCCAGCTA+AGG | - | chr5_1:55972814-55972833 | None:intergenic | 40.0% |
| ACTTATGCAGTCACTGTAGT+CGG | + | chr5_1:55972881-55972900 | Msa0738250:intron | 40.0% | |
| ACCATTGTTGACAGGAGAAT+GGG | - | chr5_1:55973494-55973513 | None:intergenic | 40.0% | |
| AACCATTGTTGACAGGAGAA+TGG | - | chr5_1:55973495-55973514 | None:intergenic | 40.0% | |
| GAAGATAGAGAAATCCTTGG+AGG | + | chr5_1:55973564-55973583 | Msa0738250:CDS | 40.0% | |
| TAGCCGAATACAGTCTCACT+GGG | - | chr5_1:55971415-55971434 | None:intergenic | 45.0% | |
| !!! | TTTTCGGGTCTAATCCAAGG+GGG | + | chr5_1:55971694-55971713 | Msa0738250:intron | 45.0% |
| AATCCAAGGGGGTAGAGTAT+TGG | + | chr5_1:55971705-55971724 | Msa0738250:intron | 45.0% | |
| ACGTGCTTTCGAAATTGACC+AGG | - | chr5_1:55971746-55971765 | None:intergenic | 45.0% | |
| TGGTTGCAGTCGAAAACTAG+TGG | + | chr5_1:55971841-55971860 | Msa0738250:intron | 45.0% | |
| GGTTTGCAGCCACTATGATA+TGG | - | chr5_1:55971878-55971897 | None:intergenic | 45.0% | |
| AGATTGTGAGGAATTGGAGC+AGG | + | chr5_1:55971921-55971940 | Msa0738250:intron | 45.0% | |
| TATCGGGTGCTTTATGTCTG+TGG | + | chr5_1:55971972-55971991 | Msa0738250:intron | 45.0% | |
| TGCTTTATGTCTGTGGCGAA+TGG | + | chr5_1:55971979-55971998 | Msa0738250:intron | 45.0% | |
| TTTATGTCTGTGGCGAATGG+TGG | + | chr5_1:55971982-55972001 | Msa0738250:intron | 45.0% | |
| !! | GAATGGGCTATGTACGTTCT+GGG | + | chr5_1:55972072-55972091 | Msa0738250:CDS | 45.0% |
| !! | AATGGGCTATGTACGTTCTG+GGG | + | chr5_1:55972073-55972092 | Msa0738250:CDS | 45.0% |
| ! | GGGTGGTGTTGAAGTATGAT+CGG | + | chr5_1:55972093-55972112 | Msa0738250:CDS | 45.0% |
| GGAATTTGGATGTTGGGGTT+TGG | + | chr5_1:55972114-55972133 | Msa0738250:intron | 45.0% | |
| ! | TGTTGGGGTTTGGTTGTAAC+AGG | + | chr5_1:55972124-55972143 | Msa0738250:intron | 45.0% |
| TGTGCAGAATGGCAGTATAG+CGG | + | chr5_1:55972279-55972298 | Msa0738250:CDS | 45.0% | |
| GCGTGAATAGTTTCGTGAAG+TGG | + | chr5_1:55972323-55972342 | Msa0738250:CDS | 45.0% | |
| ACAGCAACGGATCTAGGAAA+GGG | - | chr5_1:55972770-55972789 | None:intergenic | 45.0% | |
| TAACGTGGATACGAGTTGTC+CGG | - | chr5_1:55973190-55973209 | None:intergenic | 45.0% | |
| ACACGGAGTCACACAATCAA+GGG | - | chr5_1:55973276-55973295 | None:intergenic | 45.0% | |
| AACACGGAGTCACACAATCA+AGG | - | chr5_1:55973277-55973296 | None:intergenic | 45.0% | |
| CTCCTGTCAACAATGGTTCA+AGG | + | chr5_1:55973497-55973516 | Msa0738250:CDS | 45.0% | |
| CTCCTTGAACCATTGTTGAC+AGG | - | chr5_1:55973502-55973521 | None:intergenic | 45.0% | |
| TAGCCGAATACAGTCTCACT+GGG | - | chr5_1:55971415-55971434 | None:intergenic | 45.0% | |
| !!! | TTTTCGGGTCTAATCCAAGG+GGG | + | chr5_1:55971694-55971713 | Msa0738250:intron | 45.0% |
| AATCCAAGGGGGTAGAGTAT+TGG | + | chr5_1:55971705-55971724 | Msa0738250:intron | 45.0% | |
| ACGTGCTTTCGAAATTGACC+AGG | - | chr5_1:55971746-55971765 | None:intergenic | 45.0% | |
| TGGTTGCAGTCGAAAACTAG+TGG | + | chr5_1:55971841-55971860 | Msa0738250:intron | 45.0% | |
| GGTTTGCAGCCACTATGATA+TGG | - | chr5_1:55971878-55971897 | None:intergenic | 45.0% | |
| AGATTGTGAGGAATTGGAGC+AGG | + | chr5_1:55971921-55971940 | Msa0738250:intron | 45.0% | |
| TATCGGGTGCTTTATGTCTG+TGG | + | chr5_1:55971972-55971991 | Msa0738250:intron | 45.0% | |
| TGCTTTATGTCTGTGGCGAA+TGG | + | chr5_1:55971979-55971998 | Msa0738250:intron | 45.0% | |
| TTTATGTCTGTGGCGAATGG+TGG | + | chr5_1:55971982-55972001 | Msa0738250:intron | 45.0% | |
| !! | GAATGGGCTATGTACGTTCT+GGG | + | chr5_1:55972072-55972091 | Msa0738250:CDS | 45.0% |
| !! | AATGGGCTATGTACGTTCTG+GGG | + | chr5_1:55972073-55972092 | Msa0738250:CDS | 45.0% |
| ! | GGGTGGTGTTGAAGTATGAT+CGG | + | chr5_1:55972093-55972112 | Msa0738250:CDS | 45.0% |
| GGAATTTGGATGTTGGGGTT+TGG | + | chr5_1:55972114-55972133 | Msa0738250:intron | 45.0% | |
| ! | TGTTGGGGTTTGGTTGTAAC+AGG | + | chr5_1:55972124-55972143 | Msa0738250:intron | 45.0% |
| TGTGCAGAATGGCAGTATAG+CGG | + | chr5_1:55972279-55972298 | Msa0738250:CDS | 45.0% | |
| GCGTGAATAGTTTCGTGAAG+TGG | + | chr5_1:55972323-55972342 | Msa0738250:CDS | 45.0% | |
| ACAGCAACGGATCTAGGAAA+GGG | - | chr5_1:55972770-55972789 | None:intergenic | 45.0% | |
| TAACGTGGATACGAGTTGTC+CGG | - | chr5_1:55973190-55973209 | None:intergenic | 45.0% | |
| ACACGGAGTCACACAATCAA+GGG | - | chr5_1:55973276-55973295 | None:intergenic | 45.0% | |
| AACACGGAGTCACACAATCA+AGG | - | chr5_1:55973277-55973296 | None:intergenic | 45.0% | |
| CTCCTGTCAACAATGGTTCA+AGG | + | chr5_1:55973497-55973516 | Msa0738250:CDS | 45.0% | |
| CTCCTTGAACCATTGTTGAC+AGG | - | chr5_1:55973502-55973521 | None:intergenic | 45.0% | |
| TAGGCAGCTTGTATCGCAGT+TGG | + | chr5_1:55971336-55971355 | Msa0738250:intron | 50.0% | |
| CAGCTTGTATCGCAGTTGGA+GGG | + | chr5_1:55971340-55971359 | Msa0738250:intron | 50.0% | |
| AGCTTGTATCGCAGTTGGAG+GGG | + | chr5_1:55971341-55971360 | Msa0738250:intron | 50.0% | |
| TATCGCAGTTGGAGGGGTTA+AGG | + | chr5_1:55971347-55971366 | Msa0738250:intron | 50.0% | |
| CTAGCCGAATACAGTCTCAC+TGG | - | chr5_1:55971416-55971435 | None:intergenic | 50.0% | |
| ! | TACGCCCGATTCTCTTTTGG+CGG | - | chr5_1:55971514-55971533 | None:intergenic | 50.0% |
| ! | TGCTACGCCCGATTCTCTTT+TGG | - | chr5_1:55971517-55971536 | None:intergenic | 50.0% |
| AGAATCGGGCGTAGCATCAT+CGG | + | chr5_1:55971521-55971540 | Msa0738250:CDS | 50.0% | |
| TCTCCAATACTCTACCCCCT+TGG | - | chr5_1:55971711-55971730 | None:intergenic | 50.0% | |
| CAAATCCCAAGCAAGGGAGT+GGG | - | chr5_1:55971899-55971918 | None:intergenic | 50.0% | |
| !! | TGGAGCAGGTTTTGTCACTG+TGG | + | chr5_1:55971935-55971954 | Msa0738250:intron | 50.0% |
| TGGCGAATGGTGGTTTGACA+AGG | + | chr5_1:55971992-55972011 | Msa0738250:intron | 50.0% | |
| !! | GGAATGGGCTATGTACGTTC+TGG | + | chr5_1:55972071-55972090 | Msa0738250:CDS | 50.0% |
| !! | GTTTGAAGGGGCATTGTGTG+AGG | + | chr5_1:55972157-55972176 | Msa0738250:intron | 50.0% |
| !! | TGTGAGGCGTTGCTATAGTG+TGG | + | chr5_1:55972173-55972192 | Msa0738250:intron | 50.0% |
| !! | GTGAGGCGTTGCTATAGTGT+GGG | + | chr5_1:55972174-55972193 | Msa0738250:intron | 50.0% |
| !! | TGAGGCGTTGCTATAGTGTG+GGG | + | chr5_1:55972175-55972194 | Msa0738250:intron | 50.0% |
| TGGGTTCAGAAGTAGGTGCT+AGG | + | chr5_1:55972735-55972754 | Msa0738250:intron | 50.0% | |
| GACAGCAACGGATCTAGGAA+AGG | - | chr5_1:55972771-55972790 | None:intergenic | 50.0% | |
| TTCCTAGATCCGTTGCTGTC+AGG | + | chr5_1:55972771-55972790 | Msa0738250:intron | 50.0% | |
| TAGGCATGACCTGACAGCAA+CGG | - | chr5_1:55972783-55972802 | None:intergenic | 50.0% | |
| TTGTGAAGCCAGCTAAGGGA+AGG | - | chr5_1:55972809-55972828 | None:intergenic | 50.0% | |
| GCCCATTCTCCTGTCAACAA+TGG | + | chr5_1:55973490-55973509 | Msa0738250:CDS | 50.0% | |
| TAGGCAGCTTGTATCGCAGT+TGG | + | chr5_1:55971336-55971355 | Msa0738250:intron | 50.0% | |
| CAGCTTGTATCGCAGTTGGA+GGG | + | chr5_1:55971340-55971359 | Msa0738250:intron | 50.0% | |
| AGCTTGTATCGCAGTTGGAG+GGG | + | chr5_1:55971341-55971360 | Msa0738250:intron | 50.0% | |
| TATCGCAGTTGGAGGGGTTA+AGG | + | chr5_1:55971347-55971366 | Msa0738250:intron | 50.0% | |
| CTAGCCGAATACAGTCTCAC+TGG | - | chr5_1:55971416-55971435 | None:intergenic | 50.0% | |
| ! | TACGCCCGATTCTCTTTTGG+CGG | - | chr5_1:55971514-55971533 | None:intergenic | 50.0% |
| ! | TGCTACGCCCGATTCTCTTT+TGG | - | chr5_1:55971517-55971536 | None:intergenic | 50.0% |
| AGAATCGGGCGTAGCATCAT+CGG | + | chr5_1:55971521-55971540 | Msa0738250:CDS | 50.0% | |
| TCTCCAATACTCTACCCCCT+TGG | - | chr5_1:55971711-55971730 | None:intergenic | 50.0% | |
| CAAATCCCAAGCAAGGGAGT+GGG | - | chr5_1:55971899-55971918 | None:intergenic | 50.0% | |
| !! | TGGAGCAGGTTTTGTCACTG+TGG | + | chr5_1:55971935-55971954 | Msa0738250:intron | 50.0% |
| TGGCGAATGGTGGTTTGACA+AGG | + | chr5_1:55971992-55972011 | Msa0738250:intron | 50.0% | |
| !! | GGAATGGGCTATGTACGTTC+TGG | + | chr5_1:55972071-55972090 | Msa0738250:CDS | 50.0% |
| !! | GTTTGAAGGGGCATTGTGTG+AGG | + | chr5_1:55972157-55972176 | Msa0738250:intron | 50.0% |
| !! | TGTGAGGCGTTGCTATAGTG+TGG | + | chr5_1:55972173-55972192 | Msa0738250:intron | 50.0% |
| !! | GTGAGGCGTTGCTATAGTGT+GGG | + | chr5_1:55972174-55972193 | Msa0738250:intron | 50.0% |
| !! | TGAGGCGTTGCTATAGTGTG+GGG | + | chr5_1:55972175-55972194 | Msa0738250:intron | 50.0% |
| TGGGTTCAGAAGTAGGTGCT+AGG | + | chr5_1:55972735-55972754 | Msa0738250:intron | 50.0% | |
| GACAGCAACGGATCTAGGAA+AGG | - | chr5_1:55972771-55972790 | None:intergenic | 50.0% | |
| TTCCTAGATCCGTTGCTGTC+AGG | + | chr5_1:55972771-55972790 | Msa0738250:intron | 50.0% | |
| TAGGCATGACCTGACAGCAA+CGG | - | chr5_1:55972783-55972802 | None:intergenic | 50.0% | |
| TTGTGAAGCCAGCTAAGGGA+AGG | - | chr5_1:55972809-55972828 | None:intergenic | 50.0% | |
| GCCCATTCTCCTGTCAACAA+TGG | + | chr5_1:55973490-55973509 | Msa0738250:CDS | 50.0% | |
| GCAGCTTGTATCGCAGTTGG+AGG | + | chr5_1:55971339-55971358 | Msa0738250:intron | 55.0% | |
| TGCAAACCCACTCCCTTGCT+TGG | + | chr5_1:55971890-55971909 | Msa0738250:intron | 55.0% | |
| GCAAACCCACTCCCTTGCTT+GGG | + | chr5_1:55971891-55971910 | Msa0738250:intron | 55.0% | |
| CCAAATCCCAAGCAAGGGAG+TGG | - | chr5_1:55971900-55971919 | None:intergenic | 55.0% | |
| CCACTCCCTTGCTTGGGATT+TGG | + | chr5_1:55971897-55971916 | Msa0738250:intron | 55.0% | |
| ! | CAGCTAAGGGAGTGCGGAAT+GGG | + | chr5_1:55972056-55972075 | Msa0738250:intron | 55.0% |
| CGTTGCTATAGTGTGGGGCA+AGG | + | chr5_1:55972180-55972199 | Msa0738250:intron | 55.0% | |
| GACCTGACAGCAACGGATCT+AGG | - | chr5_1:55972776-55972795 | None:intergenic | 55.0% | |
| GCCTATTGCCTTCCCTTAGC+TGG | + | chr5_1:55972798-55972817 | Msa0738250:intron | 55.0% | |
| GCCAGCTAAGGGAAGGCAAT+AGG | - | chr5_1:55972802-55972821 | None:intergenic | 55.0% | |
| GTTGACAGGAGAATGGGCGA+AGG | - | chr5_1:55973488-55973507 | None:intergenic | 55.0% | |
| GCAGCTTGTATCGCAGTTGG+AGG | + | chr5_1:55971339-55971358 | Msa0738250:intron | 55.0% | |
| TGCAAACCCACTCCCTTGCT+TGG | + | chr5_1:55971890-55971909 | Msa0738250:intron | 55.0% | |
| GCAAACCCACTCCCTTGCTT+GGG | + | chr5_1:55971891-55971910 | Msa0738250:intron | 55.0% | |
| CCAAATCCCAAGCAAGGGAG+TGG | - | chr5_1:55971900-55971919 | None:intergenic | 55.0% | |
| CCACTCCCTTGCTTGGGATT+TGG | + | chr5_1:55971897-55971916 | Msa0738250:intron | 55.0% | |
| ! | CAGCTAAGGGAGTGCGGAAT+GGG | + | chr5_1:55972056-55972075 | Msa0738250:intron | 55.0% |
| CGTTGCTATAGTGTGGGGCA+AGG | + | chr5_1:55972180-55972199 | Msa0738250:intron | 55.0% | |
| GACCTGACAGCAACGGATCT+AGG | - | chr5_1:55972776-55972795 | None:intergenic | 55.0% | |
| GCCTATTGCCTTCCCTTAGC+TGG | + | chr5_1:55972798-55972817 | Msa0738250:intron | 55.0% | |
| GCCAGCTAAGGGAAGGCAAT+AGG | - | chr5_1:55972802-55972821 | None:intergenic | 55.0% | |
| GTTGACAGGAGAATGGGCGA+AGG | - | chr5_1:55973488-55973507 | None:intergenic | 55.0% | |
| ATCGGGCGTAGCATCATCGG+AGG | + | chr5_1:55971524-55971543 | Msa0738250:CDS | 60.0% | |
| TCGGGCGTAGCATCATCGGA+GGG | + | chr5_1:55971525-55971544 | Msa0738250:CDS | 60.0% | |
| GCGTAGCATCATCGGAGGGA+AGG | + | chr5_1:55971529-55971548 | Msa0738250:CDS | 60.0% | |
| CTGGTGCAGCTAAGGGAGTG+CGG | + | chr5_1:55972050-55972069 | Msa0738250:intron | 60.0% | |
| ! | GCAGCTAAGGGAGTGCGGAA+TGG | + | chr5_1:55972055-55972074 | Msa0738250:intron | 60.0% |
| !! | GGGCTATGTACGTTCTGGGG+TGG | + | chr5_1:55972076-55972095 | Msa0738250:CDS | 60.0% |
| ATCGGGCGTAGCATCATCGG+AGG | + | chr5_1:55971524-55971543 | Msa0738250:CDS | 60.0% | |
| TCGGGCGTAGCATCATCGGA+GGG | + | chr5_1:55971525-55971544 | Msa0738250:CDS | 60.0% | |
| GCGTAGCATCATCGGAGGGA+AGG | + | chr5_1:55971529-55971548 | Msa0738250:CDS | 60.0% | |
| CTGGTGCAGCTAAGGGAGTG+CGG | + | chr5_1:55972050-55972069 | Msa0738250:intron | 60.0% | |
| ! | GCAGCTAAGGGAGTGCGGAA+TGG | + | chr5_1:55972055-55972074 | Msa0738250:intron | 60.0% |
| !! | GGGCTATGTACGTTCTGGGG+TGG | + | chr5_1:55972076-55972095 | Msa0738250:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 55971318 | 55973636 | 55971318 | ID=Msa0738250;Name=Msa0738250 |
| chr5_1 | mRNA | 55971318 | 55973636 | 55971318 | ID=Msa0738250-mRNA-1;Parent=Msa0738250;Name=Msa0738250-mRNA-1;_AED=0.33;_eAED=0.34;_QI=0|0|0|0.8|0.5|0.6|5|0|158 |
| chr5_1 | exon | 55971318 | 55971324 | 55971318 | ID=Msa0738250-mRNA-1:exon:15805;Parent=Msa0738250-mRNA-1 |
| chr5_1 | exon | 55971507 | 55971628 | 55971507 | ID=Msa0738250-mRNA-1:exon:15806;Parent=Msa0738250-mRNA-1 |
| chr5_1 | exon | 55972059 | 55972130 | 55972059 | ID=Msa0738250-mRNA-1:exon:15807;Parent=Msa0738250-mRNA-1 |
| chr5_1 | exon | 55972271 | 55972367 | 55972271 | ID=Msa0738250-mRNA-1:exon:15808;Parent=Msa0738250-mRNA-1 |
| chr5_1 | exon | 55973458 | 55973636 | 55973458 | ID=Msa0738250-mRNA-1:exon:15809;Parent=Msa0738250-mRNA-1 |
| chr5_1 | CDS | 55971318 | 55971324 | 55971318 | ID=Msa0738250-mRNA-1:cds;Parent=Msa0738250-mRNA-1 |
| chr5_1 | CDS | 55971507 | 55971628 | 55971507 | ID=Msa0738250-mRNA-1:cds;Parent=Msa0738250-mRNA-1 |
| chr5_1 | CDS | 55972059 | 55972130 | 55972059 | ID=Msa0738250-mRNA-1:cds;Parent=Msa0738250-mRNA-1 |
| chr5_1 | CDS | 55972271 | 55972367 | 55972271 | ID=Msa0738250-mRNA-1:cds;Parent=Msa0738250-mRNA-1 |
| chr5_1 | CDS | 55973458 | 55973636 | 55973458 | ID=Msa0738250-mRNA-1:cds;Parent=Msa0738250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
