AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0701010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701010 MtrunA17_Chr3g0110041 86.957 46 6 0 82 127 259 304 6.13e-20 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 41 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTGTTCTGTGCAATTTC+AGG 0.150585 4_4:+72232979 Msa0701010:CDS
TTTGAGAGAGATCGCGATTT+AGG 0.161451 4_4:-72232790 None:intergenic
TAACTGCCTGTCATGCTTTA+AGG 0.171946 4_4:+72234827 Msa0701010:three_prime_UTR
GAGAGTGAGGGATGGAGTTT+AGG 0.184546 4_4:-72232866 None:intergenic
AGAAGTTAATGACCAAATTA+AGG 0.238374 4_4:+72235308 Msa0701010:three_prime_UTR
TAAAGTTGTTACCCTTAATT+TGG 0.242194 4_4:-72235320 None:intergenic
AGAGTGAGGGATGGAGTTTA+GGG 0.276590 4_4:-72232865 None:intergenic
ATATGCACTGCTTGGATTAT+AGG 0.290352 4_4:+72235200 Msa0701010:three_prime_UTR
TGGTAGTGGGCATGCGTTAT+GGG 0.313102 4_4:+72235160 Msa0701010:three_prime_UTR
TATACCTTCAAGTTATTAGA+AGG 0.322343 4_4:+72235707 Msa0701010:three_prime_UTR
TTGAGAGAGATCGCGATTTA+GGG 0.326219 4_4:-72232789 None:intergenic
TTATTAGAAGGTTAACCTAT+TGG 0.344211 4_4:+72235719 Msa0701010:three_prime_UTR
TTGGTAGTGGGCATGCGTTA+TGG 0.344239 4_4:+72235159 Msa0701010:three_prime_UTR
AGATAGTTATATGTTTCTAA+TGG 0.350766 4_4:+72235770 Msa0701010:three_prime_UTR
GTGGGCATGCGTTATGGGGC+TGG 0.368171 4_4:+72235165 Msa0701010:three_prime_UTR
CAGTTACGACATATTTGTTA+TGG 0.370458 4_4:-72234810 None:intergenic
GACAGTTATGAAAATGTTGA+AGG 0.401363 4_4:+72234573 Msa0701010:CDS
GGCATGGAATTTATTGGTAG+TGG 0.417211 4_4:+72235146 Msa0701010:three_prime_UTR
AGTATTATCAATCATCCAAT+AGG 0.418768 4_4:-72235734 None:intergenic
TTAGACAAATCAACAATTGT+TGG 0.426097 4_4:+72235602 Msa0701010:three_prime_UTR
TAGCGAGCTTGTTTCTCTAC+TGG 0.440208 4_4:+72235110 Msa0701010:intron
TTAACCTTCTAATAACTTGA+AGG 0.442772 4_4:-72235711 None:intergenic
GAAGTTAATGACCAAATTAA+GGG 0.448734 4_4:+72235309 Msa0701010:three_prime_UTR
ACTGAGAAGGAGAAAGCAAC+TGG 0.466476 4_4:-72232930 None:intergenic
CTAATAACTTCCTCGAGTCT+TGG 0.470165 4_4:-72235653 None:intergenic
GAACTATCCTCATGCTCCGC+TGG 0.496783 4_4:+72234852 Msa0701010:three_prime_UTR
GTTCTTCCTTAAAGCATGAC+AGG 0.503212 4_4:-72234833 None:intergenic
GCATGGAATTTATTGGTAGT+GGG 0.522746 4_4:+72235147 Msa0701010:three_prime_UTR
TGCGTTATGGGGCTGGTGTG+AGG 0.523738 4_4:+72235172 Msa0701010:three_prime_UTR
TATGGGGCTGGTGTGAGGCA+TGG 0.529105 4_4:+72235177 Msa0701010:three_prime_UTR
ATAACTTCCTCGAGTCTTGG+CGG 0.530505 4_4:-72235650 None:intergenic
TTAGATCGATTGAACTGAGA+AGG 0.541420 4_4:-72232943 None:intergenic
TCAACAATTGTTGGTGTACG+TGG 0.543817 4_4:+72235611 Msa0701010:three_prime_UTR
AGGCATGGATATGCACTGCT+TGG 0.562799 4_4:+72235192 Msa0701010:three_prime_UTR
TCTTCAAGACGGAGAAGACG+AGG 0.580161 4_4:+72234654 Msa0701010:CDS
AGAAAGCAACTGGACTGAGA+AGG 0.601184 4_4:-72232920 None:intergenic
TTCAGCACCGCCAAGACTCG+AGG 0.615879 4_4:+72235643 Msa0701010:three_prime_UTR
GGTAGTGGGCATGCGTTATG+GGG 0.619529 4_4:+72235161 Msa0701010:three_prime_UTR
GCAATTACCAGCGGAGCATG+AGG 0.621151 4_4:-72234859 None:intergenic
ATTTGTCTAAGAAATATCCA+AGG 0.624404 4_4:-72235589 None:intergenic
GAAATTGCACAGAACAGTGA+AGG 0.639054 4_4:-72232976 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGTTTTTTTTAATGAAAT+GGG + chr4_4:72233297-72233316 Msa0701010:intron 10.0%
!! AAGTTCATATAATTAAATTA+AGG - chr4_4:72234044-72234063 None:intergenic 10.0%
!!! TTTTGTTTAAAAAATACTAA+AGG - chr4_4:72234107-72234126 None:intergenic 10.0%
!!! ATTTTTTGATTTTGATGAAA+TGG + chr4_4:72233088-72233107 Msa0701010:intron 15.0%
!!! TTTTTTGATTTTGATGAAAT+GGG + chr4_4:72233089-72233108 Msa0701010:intron 15.0%
!!! TTTGTTGAAATTTTGATATT+TGG + chr4_4:72233112-72233131 Msa0701010:intron 15.0%
!!! GTATGTTTTTTTTAATGAAA+TGG + chr4_4:72233296-72233315 Msa0701010:intron 15.0%
!! TATAATTTATAACCAATACT+AGG + chr4_4:72233944-72233963 Msa0701010:intron 15.0%
!! GTTGTTCAAAAAAAAAATTA+AGG - chr4_4:72234014-72234033 None:intergenic 15.0%
!! ATTATGTTATCATATCAATT+AGG + chr4_4:72234175-72234194 Msa0701010:intron 15.0%
!!! ATCAATTTTGTTTGAAATTA+TGG + chr4_4:72234731-72234750 Msa0701010:intron 15.0%
!! CATAAAAATTGTTTAGTTAA+TGG - chr4_4:72235368-72235387 None:intergenic 15.0%
!!! TTTGTTTTTTTTGTTACAGA+TGG - chr4_4:72232761-72232780 None:intergenic 20.0%
!! CTTTAATGAAAATTTGTGTA+TGG + chr4_4:72233197-72233216 Msa0701010:intron 20.0%
!!! GTTTGTTGAAATTATGAAAT+GGG + chr4_4:72233219-72233238 Msa0701010:intron 20.0%
!!! TTTTTGTTGAAATTATGTTC+AGG + chr4_4:72233359-72233378 Msa0701010:intron 20.0%
!! AAATTCAAACAAGTAAATCA+AGG - chr4_4:72233691-72233710 None:intergenic 20.0%
!!! GTTTTTAAATGACTAACTAT+TGG + chr4_4:72233790-72233809 Msa0701010:intron 20.0%
!!! TTTTTTTTTGAACAACTTAC+TGG + chr4_4:72234018-72234037 Msa0701010:intron 20.0%
!! AAAATAAACAATTCCCTTTA+AGG - chr4_4:72234079-72234098 None:intergenic 20.0%
!!! TTTTTGTTGAAATTATGTTC+AGG + chr4_4:72233359-72233378 Msa0701010:intron 20.0%
!! CAGAAGATATAATATTAACA+AGG - chr4_4:72234766-72234785 None:intergenic 20.0%
!!! TTGTAGACTTAATTGTTTTT+TGG + chr4_4:72234926-72234945 Msa0701010:intron 20.0%
!!! TGTAGACTTAATTGTTTTTT+GGG + chr4_4:72234927-72234946 Msa0701010:intron 20.0%
!!! TAGATTTCTAAAGAATGTAA+AGG - chr4_4:72235463-72235482 None:intergenic 20.0%
!!! AATTTTCTGATGTATAATGA+GGG + chr4_4:72235489-72235508 Msa0701010:intron 20.0%
!!! AGATAGTTATATGTTTCTAA+TGG + chr4_4:72235770-72235789 Msa0701010:three_prime_UTR 20.0%
! AAAGAATATCACCTATATTG+AGG - chr4_4:72233036-72233055 None:intergenic 25.0%
!! GACTCAAATTTTCATTAAAG+AGG - chr4_4:72233274-72233293 None:intergenic 25.0%
! CTTTAATGAAAATTTGAGTC+TGG + chr4_4:72233274-72233293 Msa0701010:intron 25.0%
!!! GGTTTGTTGAAATTATGAAA+TGG + chr4_4:72233218-72233237 Msa0701010:intron 25.0%
!! CCATCATTTGAAATAAACAA+TGG - chr4_4:72233465-72233484 None:intergenic 25.0%
! CCATTGTTTATTTCAAATGA+TGG + chr4_4:72233462-72233481 Msa0701010:intron 25.0%
! AGGAAGCAATTATCTATAAT+TGG + chr4_4:72233517-72233536 Msa0701010:intron 25.0%
! AAGCAATTATCTATAATTGG+AGG + chr4_4:72233520-72233539 Msa0701010:intron 25.0%
! AGCAATTATCTATAATTGGA+GGG + chr4_4:72233521-72233540 Msa0701010:intron 25.0%
!!! CATAAAACTAGTATTGATGA+TGG + chr4_4:72233576-72233595 Msa0701010:intron 25.0%
! TTTATAACCAATACTAGGTT+TGG + chr4_4:72233949-72233968 Msa0701010:intron 25.0%
! AGTAAGTAAATGCATTCAAA+AGG - chr4_4:72234512-72234531 None:intergenic 25.0%
!! TTCTTTGTTAACGATTTTGA+TGG + chr4_4:72234621-72234640 Msa0701010:CDS 25.0%
!!! TCTTTGTTAACGATTTTGAT+GGG + chr4_4:72234622-72234641 Msa0701010:CDS 25.0%
!! ATTGAAGATTGTTATTAGTG+TGG + chr4_4:72234953-72234972 Msa0701010:intron 25.0%
!! TTGAAGATTGTTATTAGTGT+GGG + chr4_4:72234954-72234973 Msa0701010:intron 25.0%
! TAGTTTAGATGAAAGTTTGA+TGG + chr4_4:72234999-72235018 Msa0701010:intron 25.0%
! AGTTTAGATGAAAGTTTGAT+GGG + chr4_4:72235000-72235019 Msa0701010:intron 25.0%
! AGAAGTTAATGACCAAATTA+AGG + chr4_4:72235308-72235327 Msa0701010:three_prime_UTR 25.0%
! GAAGTTAATGACCAAATTAA+GGG + chr4_4:72235309-72235328 Msa0701010:three_prime_UTR 25.0%
! TAAAGTTGTTACCCTTAATT+TGG - chr4_4:72235323-72235342 None:intergenic 25.0%
! TGAATGATGGTTTAAAAGAA+TGG + chr4_4:72235413-72235432 Msa0701010:intron 25.0%
!! TTTCTAAAGAATGTAAAGGA+GGG - chr4_4:72235459-72235478 None:intergenic 25.0%
!! ATTTCTAAAGAATGTAAAGG+AGG - chr4_4:72235460-72235479 None:intergenic 25.0%
!! GAATTTTCTGATGTATAATG+AGG + chr4_4:72235488-72235507 Msa0701010:intron 25.0%
! TGATTCTGTACAAAAATACA+AGG - chr4_4:72235567-72235586 None:intergenic 25.0%
! ATTTGTCTAAGAAATATCCA+AGG - chr4_4:72235592-72235611 None:intergenic 25.0%
! TTAGACAAATCAACAATTGT+TGG + chr4_4:72235602-72235621 Msa0701010:three_prime_UTR 25.0%
!! TATACCTTCAAGTTATTAGA+AGG + chr4_4:72235707-72235726 Msa0701010:three_prime_UTR 25.0%
! TTAACCTTCTAATAACTTGA+AGG - chr4_4:72235714-72235733 None:intergenic 25.0%
! TTATTAGAAGGTTAACCTAT+TGG + chr4_4:72235719-72235738 Msa0701010:three_prime_UTR 25.0%
! AGTATTATCAATCATCCAAT+AGG - chr4_4:72235737-72235756 None:intergenic 25.0%
! GTTTGTTGAAAATTTGAGTC+TGG + chr4_4:72233142-72233161 Msa0701010:intron 30.0%
!!! TTTTGACTTCTGCTGAAATT+AGG + chr4_4:72233169-72233188 Msa0701010:intron 30.0%
GAAATGCAGGTTATTTATGT+TGG + chr4_4:72233598-72233617 Msa0701010:intron 30.0%
!! TCGATTTGTTGAAACTTGAA+TGG + chr4_4:72233654-72233673 Msa0701010:intron 30.0%
TAATGATTCGACAATTCTCA+TGG + chr4_4:72233820-72233839 Msa0701010:intron 30.0%
AAAAAATTAAGGCCAGTAAG+AGG - chr4_4:72234003-72234022 None:intergenic 30.0%
TTGAACTTGATTCTCCTTAA+AGG + chr4_4:72234062-72234081 Msa0701010:intron 30.0%
TGAACTTGATTCTCCTTAAA+GGG + chr4_4:72234063-72234082 Msa0701010:intron 30.0%
TGTAAAACAGTCCTTGATTT+GGG + chr4_4:72234133-72234152 Msa0701010:intron 30.0%
!! GGAGAATATTTTTGTGTTTC+TGG + chr4_4:72234196-72234215 Msa0701010:intron 30.0%
!!! TATTTTTGTGTTTCTGGAAC+TGG + chr4_4:72234202-72234221 Msa0701010:intron 30.0%
GACAGTTATGAAAATGTTGA+AGG + chr4_4:72234573-72234592 Msa0701010:CDS 30.0%
!!! TTTTTAGGTTAGTTCCTATG+TGG - chr4_4:72234685-72234704 None:intergenic 30.0%
GGAACTAACCTAAAAAATTC+CGG + chr4_4:72234689-72234708 Msa0701010:exon 30.0%
GAACTAACCTAAAAAATTCC+GGG + chr4_4:72234690-72234709 Msa0701010:exon 30.0%
AACTAACCTAAAAAATTCCG+GGG + chr4_4:72234691-72234710 Msa0701010:exon 30.0%
TGTCTGTTCAATTAGCAAAT+GGG - chr4_4:72234790-72234809 None:intergenic 30.0%
! CAGTTACGACATATTTGTTA+TGG - chr4_4:72234813-72234832 None:intergenic 30.0%
TTCATCTAAACTATGAAGCA+GGG - chr4_4:72234992-72235011 None:intergenic 30.0%
TTTCATCTAAACTATGAAGC+AGG - chr4_4:72234993-72235012 None:intergenic 30.0%
! AGTTGGTTTCAATGTAACAA+AGG - chr4_4:72235048-72235067 None:intergenic 30.0%
TAGCAACCAAGAATAACAAT+AGG - chr4_4:72235083-72235102 None:intergenic 30.0%
!! TTTTTGGGCATGGAATTTAT+TGG + chr4_4:72235140-72235159 Msa0701010:three_prime_UTR 30.0%
CGATGCTAACATATACAAAA+AGG - chr4_4:72235270-72235289 None:intergenic 30.0%
! AAGCTCTTTATCATCTCTTT+TGG + chr4_4:72235514-72235533 Msa0701010:intron 30.0%
! AGCTCTTTATCATCTCTTTT+GGG + chr4_4:72235515-72235534 Msa0701010:intron 30.0%
! TTTTGTACAGAATCAAACCT+TGG + chr4_4:72235572-72235591 Msa0701010:intron 30.0%
TTAGATCGATTGAACTGAGA+AGG - chr4_4:72232946-72232965 None:intergenic 35.0%
TCAGTTTCGTTCCTCAATAT+AGG + chr4_4:72233022-72233041 Msa0701010:intron 35.0%
!! CAGGTTTGTTTTCTATGTTC+AGG + chr4_4:72233378-72233397 Msa0701010:intron 35.0%
GCGTATTATCACTAAAGTCA+CGG - chr4_4:72233419-72233438 None:intergenic 35.0%
ATTGGATTGTAGTCAAGAAG+AGG + chr4_4:72233497-72233516 Msa0701010:intron 35.0%
!! AGTATTGATGATGGAAATGC+AGG + chr4_4:72233585-72233604 Msa0701010:intron 35.0%
TAAGCTTTCAACAAAACCCT+TGG - chr4_4:72233631-72233650 None:intergenic 35.0%
TCAACCAAAAAAGCAGTCAT+AGG - chr4_4:72233766-72233785 None:intergenic 35.0%
AAAATCGCCAAACCTAGTAT+TGG - chr4_4:72233959-72233978 None:intergenic 35.0%
GTGTAAAACAGTCCTTGATT+TGG + chr4_4:72234132-72234151 Msa0701010:intron 35.0%
! GTAAAACAGTCCTTGATTTG+GGG + chr4_4:72234134-72234153 Msa0701010:intron 35.0%
!! TAAAACAGTCCTTGATTTGG+GGG + chr4_4:72234135-72234154 Msa0701010:intron 35.0%
!! CAGGTTTGTTTTCTATGTTC+AGG + chr4_4:72233378-72233397 Msa0701010:intron 35.0%
TACTGAGTTTGTGAATTTGC+AGG + chr4_4:72234528-72234547 Msa0701010:intron 35.0%
!!! GATTTACCCCGGAATTTTTT+AGG - chr4_4:72234700-72234719 None:intergenic 35.0%
AACAGAAACTAGATTTACCC+CGG - chr4_4:72234711-72234730 None:intergenic 35.0%
GTGTCTGTTCAATTAGCAAA+TGG - chr4_4:72234791-72234810 None:intergenic 35.0%
! TGAGTGCCTATTGTTATTCT+TGG + chr4_4:72235074-72235093 Msa0701010:intron 35.0%
!!! TCTACTGGTAGCTACTTTTT+GGG + chr4_4:72235125-72235144 Msa0701010:three_prime_UTR 35.0%
! GCATGGAATTTATTGGTAGT+GGG + chr4_4:72235147-72235166 Msa0701010:three_prime_UTR 35.0%
ATATGCACTGCTTGGATTAT+AGG + chr4_4:72235200-72235219 Msa0701010:three_prime_UTR 35.0%
TATAGGTCATCACAGTAACA+TGG + chr4_4:72235217-72235236 Msa0701010:intron 35.0%
! AAAGCATCTGCATTGAATGA+TGG + chr4_4:72235400-72235419 Msa0701010:intron 35.0%
! GCTCTTTATCATCTCTTTTG+GGG + chr4_4:72235516-72235535 Msa0701010:intron 35.0%
TTGAGAGAGATCGCGATTTA+GGG - chr4_4:72232792-72232811 None:intergenic 40.0%
TTTGAGAGAGATCGCGATTT+AGG - chr4_4:72232793-72232812 None:intergenic 40.0%
GAAATTGCACAGAACAGTGA+AGG - chr4_4:72232979-72232998 None:intergenic 40.0%
TCACTGTTCTGTGCAATTTC+AGG + chr4_4:72232979-72232998 Msa0701010:CDS 40.0%
GGAACGAAACTGAGAAAGAA+AGG - chr4_4:72233015-72233034 None:intergenic 40.0%
! TGATGGTGATACACTGCTAT+TGG + chr4_4:72233479-72233498 Msa0701010:intron 40.0%
TTTATGTTGGAGCTTTGCCA+AGG + chr4_4:72233611-72233630 Msa0701010:intron 40.0%
TTATGTTGGAGCTTTGCCAA+GGG + chr4_4:72233612-72233631 Msa0701010:intron 40.0%
!!! CGTTCCTATGACTGCTTTTT+TGG + chr4_4:72233759-72233778 Msa0701010:intron 40.0%
!! AAAACAGTCCTTGATTTGGG+GGG + chr4_4:72234136-72234155 Msa0701010:intron 40.0%
GTGCAACACATTTCTTTGAC+GGG - chr4_4:72234258-72234277 None:intergenic 40.0%
GGTGCAACACATTTCTTTGA+CGG - chr4_4:72234259-72234278 None:intergenic 40.0%
AACGAATTGCTGTAAACACC+CGG - chr4_4:72234302-72234321 None:intergenic 40.0%
TGAGTCTGCATTTAGTGTCT+TGG + chr4_4:72234446-72234465 Msa0701010:intron 40.0%
GAGTCTGCATTTAGTGTCTT+GGG + chr4_4:72234447-72234466 Msa0701010:intron 40.0%
!! GGTTTTATCGCTCTTCAAGA+CGG + chr4_4:72234643-72234662 Msa0701010:CDS 40.0%
! AAGACGAGGATTTTCCACAT+AGG + chr4_4:72234668-72234687 Msa0701010:CDS 40.0%
TAACTGCCTGTCATGCTTTA+AGG + chr4_4:72234827-72234846 Msa0701010:three_prime_UTR 40.0%
GTTCTTCCTTAAAGCATGAC+AGG - chr4_4:72234836-72234855 None:intergenic 40.0%
AACACATGAGCAATTACCAG+CGG - chr4_4:72234871-72234890 None:intergenic 40.0%
! TAGATGAAAGTTTGATGGGC+TGG + chr4_4:72235004-72235023 Msa0701010:intron 40.0%
!!! CTCTACTGGTAGCTACTTTT+TGG + chr4_4:72235124-72235143 Msa0701010:three_prime_UTR 40.0%
GGCATGGAATTTATTGGTAG+TGG + chr4_4:72235146-72235165 Msa0701010:three_prime_UTR 40.0%
GCAGATGCTTTCACGATTAA+TGG - chr4_4:72235391-72235410 None:intergenic 40.0%
TCAACAATTGTTGGTGTACG+TGG + chr4_4:72235611-72235630 Msa0701010:three_prime_UTR 40.0%
CTAATAACTTCCTCGAGTCT+TGG - chr4_4:72235656-72235675 None:intergenic 40.0%
AGAGTGAGGGATGGAGTTTA+GGG - chr4_4:72232868-72232887 None:intergenic 45.0%
AGAAAGCAACTGGACTGAGA+AGG - chr4_4:72232923-72232942 None:intergenic 45.0%
ACTGAGAAGGAGAAAGCAAC+TGG - chr4_4:72232933-72232952 None:intergenic 45.0%
GATCATAGAGTTGAGCGAAC+AGG + chr4_4:72233543-72233562 Msa0701010:intron 45.0%
AATTAAGGCCAGTAAGAGGC+AGG - chr4_4:72233999-72234018 None:intergenic 45.0%
TGTATTGTCCCCCCAAATCA+AGG - chr4_4:72234147-72234166 None:intergenic 45.0%
AGAAATGTGTTGCACCGCAT+TGG + chr4_4:72234263-72234282 Msa0701010:intron 45.0%
GCAGGATATCTCAACCAATG+CGG - chr4_4:72234280-72234299 None:intergenic 45.0%
! CATTGGTTGAGATATCCTGC+CGG + chr4_4:72234280-72234299 Msa0701010:intron 45.0%
ATTGGTTGAGATATCCTGCC+GGG + chr4_4:72234281-72234300 Msa0701010:intron 45.0%
ATAGGCACTCACACACTAGT+TGG - chr4_4:72235065-72235084 None:intergenic 45.0%
! TAGCGAGCTTGTTTCTCTAC+TGG + chr4_4:72235110-72235129 Msa0701010:intron 45.0%
!!! TGGTAGCTACTTTTTGGGCA+TGG + chr4_4:72235130-72235149 Msa0701010:three_prime_UTR 45.0%
ATAACTTCCTCGAGTCTTGG+CGG - chr4_4:72235653-72235672 None:intergenic 45.0%
GAGAGTGAGGGATGGAGTTT+AGG - chr4_4:72232869-72232888 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGTGA+GGG - chr4_4:72232881-72232900 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGTG+AGG - chr4_4:72232882-72232901 None:intergenic 50.0%
ACAAACAGCCTGCCTCTTAC+TGG + chr4_4:72233988-72234007 Msa0701010:intron 50.0%
!! GTGTTTCTGGAACTGGCATG+TGG + chr4_4:72234209-72234228 Msa0701010:intron 50.0%
AATTGCTGTAAACACCCGGC+AGG - chr4_4:72234298-72234317 None:intergenic 50.0%
TCTTCAAGACGGAGAAGACG+AGG + chr4_4:72234654-72234673 Msa0701010:CDS 50.0%
!! TTGGTAGTGGGCATGCGTTA+TGG + chr4_4:72235159-72235178 Msa0701010:three_prime_UTR 50.0%
!! TGGTAGTGGGCATGCGTTAT+GGG + chr4_4:72235160-72235179 Msa0701010:three_prime_UTR 50.0%
AGGCATGGATATGCACTGCT+TGG + chr4_4:72235192-72235211 Msa0701010:three_prime_UTR 50.0%
GAGAGAGAGAGAGTGAGGGA+TGG - chr4_4:72232877-72232896 None:intergenic 55.0%
!! TTCTGGAACTGGCATGTGGC+AGG + chr4_4:72234213-72234232 Msa0701010:intron 55.0%
! TCTGGAACTGGCATGTGGCA+GGG + chr4_4:72234214-72234233 Msa0701010:intron 55.0%
GAACTATCCTCATGCTCCGC+TGG + chr4_4:72234852-72234871 Msa0701010:three_prime_UTR 55.0%
GCAATTACCAGCGGAGCATG+AGG - chr4_4:72234862-72234881 None:intergenic 55.0%
!! GGTAGTGGGCATGCGTTATG+GGG + chr4_4:72235161-72235180 Msa0701010:three_prime_UTR 55.0%
CTGGAACTGGCATGTGGCAG+GGG + chr4_4:72234215-72234234 Msa0701010:intron 60.0%
! TGCGTTATGGGGCTGGTGTG+AGG + chr4_4:72235172-72235191 Msa0701010:three_prime_UTR 60.0%
! TATGGGGCTGGTGTGAGGCA+TGG + chr4_4:72235177-72235196 Msa0701010:three_prime_UTR 60.0%
TTCAGCACCGCCAAGACTCG+AGG + chr4_4:72235643-72235662 Msa0701010:three_prime_UTR 60.0%
GTGGGCATGCGTTATGGGGC+TGG + chr4_4:72235165-72235184 Msa0701010:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 72232755 72235909 72232755 ID=Msa0701010;Name=Msa0701010
chr4_4 mRNA 72232755 72235909 72232755 ID=Msa0701010-mRNA-1;Parent=Msa0701010;Name=Msa0701010-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.8|0.83|1|0|0.33|6|586|130
chr4_4 exon 72232755 72233000 72232755 ID=Msa0701010-mRNA-1:exon:22088;Parent=Msa0701010-mRNA-1
chr4_4 exon 72234550 72234712 72234550 ID=Msa0701010-mRNA-1:exon:22089;Parent=Msa0701010-mRNA-1
chr4_4 exon 72234807 72234873 72234807 ID=Msa0701010-mRNA-1:exon:22090;Parent=Msa0701010-mRNA-1
chr4_4 exon 72235113 72235230 72235113 ID=Msa0701010-mRNA-1:exon:22091;Parent=Msa0701010-mRNA-1
chr4_4 exon 72235274 72235330 72235274 ID=Msa0701010-mRNA-1:exon:22092;Parent=Msa0701010-mRNA-1
chr4_4 exon 72235582 72235909 72235582 ID=Msa0701010-mRNA-1:exon:22093;Parent=Msa0701010-mRNA-1
chr4_4 CDS 72232755 72233000 72232755 ID=Msa0701010-mRNA-1:cds;Parent=Msa0701010-mRNA-1
chr4_4 CDS 72234550 72234696 72234550 ID=Msa0701010-mRNA-1:cds;Parent=Msa0701010-mRNA-1
chr4_4 three_prime_UTR 72234697 72234712 72234697 ID=Msa0701010-mRNA-1:three_prime_utr;Parent=Msa0701010-mRNA-1
chr4_4 three_prime_UTR 72234807 72234873 72234807 ID=Msa0701010-mRNA-1:three_prime_utr;Parent=Msa0701010-mRNA-1
chr4_4 three_prime_UTR 72235113 72235230 72235113 ID=Msa0701010-mRNA-1:three_prime_utr;Parent=Msa0701010-mRNA-1
chr4_4 three_prime_UTR 72235274 72235330 72235274 ID=Msa0701010-mRNA-1:three_prime_utr;Parent=Msa0701010-mRNA-1
chr4_4 three_prime_UTR 72235582 72235909 72235582 ID=Msa0701010-mRNA-1:three_prime_utr;Parent=Msa0701010-mRNA-1
Gene Sequence

>Msa0701010

AATCCATCTGTAACAAAAAAAACAAAAACACAATCCCTAAATCGCGATCTCTCTCAAAGCGCTCTCTCTCACAGTAAAAGCTCTTTCTTCAATCTGAAGACGATAGATAACCCTAAACTCCATCCCTCACTCTCTCTCTCTCTCTCTCTCGTTCAATCGCTTTCTCCTTCTCAGTCCAGTTGCTTTCTCCTTCTCAGTTCAATCGATCTAAATCGCTCTCTCCTTCACTGTTCTGTGCAATTTCAGGAGTTAACGTTTAATGCGTCTTTGACAGTTATGAAAATGTTGAAGGATTTAGAGAGAACTGAAGTTTGTGATTCTTTGTTAACGATTTTGATGGGTTTTATCGCTCTTCAAGACGGAGAAGACGAGGATTTTCCACATAGGAACTAA

Protein sequence

>Msa0701010

NPSVTKKTKTQSLNRDLSQSALSHSKSSFFNLKTIDNPKLHPSLSLSLSLVQSLSPSQSSCFLLLSSIDLNRSLLHCSVQFQELTFNASLTVMKMLKDLERTEVCDSLLTILMGFIALQDGEDEDFPHRN*