Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739590 | XP_003616933.3 | 97.381 | 420 | 7 | 2 | 2 | 418 | 4 | 422 | 0.0 | 817 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739590 | sp|Q7Y175|PUX5_ARATH | 55.502 | 418 | 149 | 12 | 31 | 417 | 9 | 420 | 6.48e-126 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739590 | A0A396HVH4 | 97.381 | 420 | 7 | 2 | 2 | 418 | 4 | 422 | 0.0 | 817 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0739590 | Msa1157930 | 0.860354 | 2.190132e-63 | -8.615850e-47 |
| Msa0306110 | Msa0739590 | 0.814571 | 1.439397e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739590 | MtrunA17_Chr5g0439401 | 97.381 | 420 | 7 | 2 | 2 | 418 | 4 | 422 | 0.0 | 817 |
| Msa0739590 | MtrunA17_Chr2g0289211 | 63.455 | 301 | 95 | 8 | 127 | 417 | 7 | 302 | 4.54e-111 | 328 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739590 | AT4G15410.1 | 55.502 | 418 | 149 | 12 | 31 | 417 | 9 | 420 | 6.59e-127 | 373 |
| Msa0739590 | AT4G04210.1 | 60.067 | 298 | 111 | 5 | 126 | 417 | 7 | 302 | 8.38e-108 | 320 |
| Msa0739590 | AT4G22150.1 | 59.044 | 293 | 106 | 6 | 133 | 417 | 15 | 301 | 1.40e-103 | 309 |
| Msa0739590 | AT3G21660.2 | 47.475 | 198 | 76 | 5 | 223 | 417 | 265 | 437 | 8.82e-48 | 169 |
| Msa0739590 | AT3G21660.2 | 33.333 | 186 | 86 | 7 | 106 | 288 | 62 | 212 | 6.71e-11 | 64.3 |
| Msa0739590 | AT3G21660.1 | 44.615 | 195 | 83 | 4 | 223 | 417 | 265 | 434 | 1.85e-41 | 152 |
| Msa0739590 | AT3G21660.1 | 33.333 | 186 | 86 | 7 | 106 | 288 | 62 | 212 | 5.82e-11 | 64.3 |
Find 128 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAATGGAAAACTAAAT+AGG | 0.198035 | 5_1:+57944012 | None:intergenic |
| ATCAGTTGGTTCAAGCTCTT+TGG | 0.246690 | 5_1:+57944597 | None:intergenic |
| CGTGGGGTTGGAAGAACTTT+AGG | 0.259691 | 5_1:-57944394 | Msa0739590:CDS |
| TTTGAATGGAAAACTAAATA+GGG | 0.295823 | 5_1:+57944013 | None:intergenic |
| TCCCAAACAACTTACTGATT+TGG | 0.297389 | 5_1:-57944107 | Msa0739590:CDS |
| CATAATGATTTCAATTTGAA+TGG | 0.307500 | 5_1:+57943999 | None:intergenic |
| CTGTCAATGACGGTCCTTTA+CGG | 0.332149 | 5_1:-57946068 | Msa0739590:CDS |
| TTACACATGTGGTCACCTTT+TGG | 0.333647 | 5_1:-57946104 | Msa0739590:CDS |
| GAATCGCTTGATGAGGGTTT+CGG | 0.349947 | 5_1:+57948211 | None:intergenic |
| AAAGAAAAGCGCTTCTTGTT+TGG | 0.350028 | 5_1:+57948147 | None:intergenic |
| GTCCAAATCAGTAAGTTGTT+TGG | 0.365932 | 5_1:+57944105 | None:intergenic |
| GGAACCGCCAGATTGCTTTC+CGG | 0.374244 | 5_1:-57946165 | Msa0739590:CDS |
| TCAATCACCACCATGCAATC+AGG | 0.385554 | 5_1:-57944204 | Msa0739590:CDS |
| GGCTATACCAGCTTGCTCTA+TGG | 0.390903 | 5_1:+57944078 | None:intergenic |
| AAGTAGATCAATCAATGTTT+AGG | 0.391059 | 5_1:+57943970 | None:intergenic |
| TCAGTTGGTTCAAGCTCTTT+GGG | 0.394997 | 5_1:+57944598 | None:intergenic |
| TCCAAATCAGTAAGTTGTTT+GGG | 0.395118 | 5_1:+57944106 | None:intergenic |
| GTAGCGGTGGTGTCGTTTAG+AGG | 0.399712 | 5_1:+57948058 | None:intergenic |
| GAATCATCAGGGTGAAAATC+AGG | 0.408034 | 5_1:+57947992 | None:intergenic |
| TTCACGAAAGCAATTCTGTA+TGG | 0.409401 | 5_1:+57943914 | None:intergenic |
| TGCCTCGCCGGAAAGCAATC+TGG | 0.411044 | 5_1:+57946158 | None:intergenic |
| TACCACCCCTGGTAGGATCT+TGG | 0.413499 | 5_1:+57946274 | None:intergenic |
| AGAGAATCGGAAGGTGAAAC+GGG | 0.415530 | 5_1:+57948019 | None:intergenic |
| CTCCTGCTGAAAACTCTTCA+AGG | 0.416506 | 5_1:-57946203 | Msa0739590:CDS |
| GAATTTCACGGAATACTCAT+TGG | 0.418000 | 5_1:-57943943 | Msa0739590:three_prime_UTR |
| GTAGTAGGCAAAGTGGGATT+CGG | 0.455964 | 5_1:-57947880 | Msa0739590:CDS |
| TACCAGCTTGCTCTATGGTC+TGG | 0.457421 | 5_1:+57944083 | None:intergenic |
| TGCGAAGGAGGAGAATCATC+AGG | 0.457602 | 5_1:+57947980 | None:intergenic |
| CTGAAAACTCTTCAAGGTCT+AGG | 0.458449 | 5_1:-57946197 | Msa0739590:CDS |
| AGAAAAGCGGCTCTGGTAGT+AGG | 0.460070 | 5_1:-57947895 | Msa0739590:CDS |
| AGCAGATGGCACTGCCTCGC+CGG | 0.463954 | 5_1:+57946146 | None:intergenic |
| TGGTAATTTCTTGCCCCACC+AGG | 0.468820 | 5_1:+57944151 | None:intergenic |
| GCAGTATTGCGTGGCTTCAC+GGG | 0.469573 | 5_1:+57944421 | None:intergenic |
| TACCATCAGATAACCTTAGC+TGG | 0.471996 | 5_1:+57944245 | None:intergenic |
| TGACGGTCCTTTACGGAGGT+TGG | 0.474754 | 5_1:-57946061 | Msa0739590:CDS |
| AGCAGTATTGCGTGGCTTCA+CGG | 0.477508 | 5_1:+57944420 | None:intergenic |
| ACGTGAAGAAACAGAAAGAA+TGG | 0.478497 | 5_1:-57948245 | Msa0739590:CDS |
| AATTACCAACTGCAGACAAT+GGG | 0.481202 | 5_1:-57944136 | Msa0739590:CDS |
| ACTAAACCCATTGCTGGCGC+TGG | 0.481482 | 5_1:+57944298 | None:intergenic |
| CTTCGAGATCGAAGCTCATA+CGG | 0.482804 | 5_1:+57947929 | None:intergenic |
| CTTCGATCTCGAAGGTCGAT+TGG | 0.483202 | 5_1:-57947920 | Msa0739590:CDS |
| TGCTTGTCCAAGATCCTACC+AGG | 0.483934 | 5_1:-57946281 | Msa0739590:CDS |
| TCTACAACTAAACCCATTGC+TGG | 0.487368 | 5_1:+57944292 | None:intergenic |
| ACTGCTCCAGCGCCAGCAAT+GGG | 0.489106 | 5_1:-57944304 | Msa0739590:CDS |
| TTAGGTGACAGCAGTTCAAA+TGG | 0.492099 | 5_1:-57944376 | Msa0739590:CDS |
| ATTGGTAAGAAAAGCGGCTC+TGG | 0.495571 | 5_1:-57947902 | Msa0739590:CDS |
| TTGAATGGAAAACTAAATAG+GGG | 0.501687 | 5_1:+57944014 | None:intergenic |
| GGTTGAGACGGACAGAAGTT+CGG | 0.505855 | 5_1:+57944572 | None:intergenic |
| TGCGGTGGAATCGCTTGATG+AGG | 0.508482 | 5_1:+57948204 | None:intergenic |
| ACAGAAGTTCGGCGATCAGT+TGG | 0.512498 | 5_1:+57944583 | None:intergenic |
| TGTAACTGATTCTACTGGCT+GGG | 0.513304 | 5_1:+57946122 | None:intergenic |
| TACTGCTCCAGCGCCAGCAA+TGG | 0.515865 | 5_1:-57944305 | Msa0739590:CDS |
| AGCAGTAAGTGGGGAAGCAC+CGG | 0.520572 | 5_1:+57944321 | None:intergenic |
| AAGAGAATCGGAAGGTGAAA+CGG | 0.521074 | 5_1:+57948018 | None:intergenic |
| GTGTAACTGATTCTACTGGC+TGG | 0.522415 | 5_1:+57946121 | None:intergenic |
| GCTGGCGCTGGAGCAGTAAG+TGG | 0.525015 | 5_1:+57944310 | None:intergenic |
| TGAGACGGCGATTGCGAAGG+AGG | 0.529294 | 5_1:+57947968 | None:intergenic |
| CCGTCTCAACCTCACAAGGC+GGG | 0.529508 | 5_1:-57944560 | Msa0739590:CDS |
| CGGTTCATCAGAATCAGAAT+CGG | 0.532241 | 5_1:+57947826 | None:intergenic |
| TTCTGATTCTGATGAACCGC+AGG | 0.535431 | 5_1:-57947822 | Msa0739590:CDS |
| CACGCAATACTGCTTTCCGT+GGG | 0.535644 | 5_1:-57944411 | Msa0739590:CDS |
| AAAATCAGGTGAAAGAGAAT+CGG | 0.535852 | 5_1:+57948006 | None:intergenic |
| AGAAAACCCATTCCTCCAAA+AGG | 0.536739 | 5_1:+57946089 | None:intergenic |
| TCTACTGGCTGGGGAGCAGA+TGG | 0.544488 | 5_1:+57946132 | None:intergenic |
| AATACTGCTTTCCGTGGGGT+TGG | 0.550672 | 5_1:-57944406 | Msa0739590:CDS |
| GCGGTGGAATCGCTTGATGA+GGG | 0.553705 | 5_1:+57948205 | None:intergenic |
| CGCCAGATTGCTTTCCGGCG+AGG | 0.554024 | 5_1:-57946160 | Msa0739590:CDS |
| GACTGAGACGGCGATTGCGA+AGG | 0.554582 | 5_1:+57947965 | None:intergenic |
| TAGCGGTGGTGTCGTTTAGA+GGG | 0.555230 | 5_1:+57948059 | None:intergenic |
| CTTAGCTGGATTGAGGTCAC+TGG | 0.555623 | 5_1:+57944259 | None:intergenic |
| CAATCACCACCATGCAATCA+GGG | 0.555905 | 5_1:-57944203 | Msa0739590:CDS |
| CCCGCCTTGTGAGGTTGAGA+CGG | 0.558341 | 5_1:+57944560 | None:intergenic |
| GGACCTAGTCAAACTACTGC+CGG | 0.558354 | 5_1:-57944340 | Msa0739590:CDS |
| AGATAACCTTAGCTGGATTG+AGG | 0.560345 | 5_1:+57944252 | None:intergenic |
| GGATCTTCCAACCTCCGTAA+AGG | 0.565832 | 5_1:+57946054 | None:intergenic |
| ATCCACAGAATTACCACCCC+TGG | 0.567943 | 5_1:+57946263 | None:intergenic |
| CTGGCGCTGGAGCAGTAAGT+GGG | 0.569503 | 5_1:+57944311 | None:intergenic |
| ACATGTGTAACTGATTCTAC+TGG | 0.569920 | 5_1:+57946117 | None:intergenic |
| TGATGCATCAAGACCTGGTG+GGG | 0.572769 | 5_1:-57944164 | Msa0739590:CDS |
| GAAAACCCATTGTCTGCAGT+TGG | 0.578693 | 5_1:+57944131 | None:intergenic |
| TTCATTGATGCATCAAGACC+TGG | 0.579125 | 5_1:-57944169 | Msa0739590:CDS |
| CCACGCAATACTGCTTTCCG+TGG | 0.590418 | 5_1:-57944412 | Msa0739590:CDS |
| CTGTCCGTCTCAACCTCACA+AGG | 0.592041 | 5_1:-57944564 | Msa0739590:CDS |
| AAATTACCAACTGCAGACAA+TGG | 0.595134 | 5_1:-57944137 | Msa0739590:CDS |
| CTCGAATATCCCTGATTGCA+TGG | 0.595950 | 5_1:+57944194 | None:intergenic |
| GTTATCTGATGGTACACGAA+TGG | 0.596346 | 5_1:-57944236 | Msa0739590:CDS |
| CAGTGACCTCAATCCAGCTA+AGG | 0.597831 | 5_1:-57944258 | Msa0739590:CDS |
| TACCAGGGGTGGTAATTCTG+TGG | 0.600555 | 5_1:-57946265 | Msa0739590:CDS |
| AAATCAGTAAGTTGTTTGGG+AGG | 0.610070 | 5_1:+57944109 | None:intergenic |
| AGCTCATACGGAGCACGTGA+CGG | 0.613610 | 5_1:+57947941 | None:intergenic |
| TCAAATGGTGAAGCTGCTAG+TGG | 0.617236 | 5_1:-57944361 | Msa0739590:CDS |
| GAACCGCAGGAGTATTATGC+TGG | 0.618612 | 5_1:-57947809 | Msa0739590:CDS |
| GCTCTGGTAGTAGGCAAAGT+GGG | 0.620239 | 5_1:-57947886 | Msa0739590:CDS |
| GCACCGGCAGTAGTTTGACT+AGG | 0.626229 | 5_1:+57944337 | None:intergenic |
| GACCAGACCATAGAGCAAGC+TGG | 0.627070 | 5_1:-57944085 | Msa0739590:CDS |
| TTGATGCATCAAGACCTGGT+GGG | 0.628623 | 5_1:-57944165 | Msa0739590:CDS |
| GCACGTGACGGTGACTGAGA+CGG | 0.629017 | 5_1:+57947953 | None:intergenic |
| GGCTCTGGTAGTAGGCAAAG+TGG | 0.629593 | 5_1:-57947887 | Msa0739590:CDS |
| ATCCAGCTAAGGTTATCTGA+TGG | 0.632636 | 5_1:-57944247 | Msa0739590:CDS |
| GTCCAAGATCCTACCAGGGG+TGG | 0.635356 | 5_1:-57946276 | Msa0739590:CDS |
| CTCGCCGGAAAGCAATCTGG+CGG | 0.637134 | 5_1:+57946161 | None:intergenic |
| TCCGTCTCAACCTCACAAGG+CGG | 0.638683 | 5_1:-57944561 | Msa0739590:CDS |
| CCGCAGGAGTATTATGCTGG+TGG | 0.640112 | 5_1:-57947806 | Msa0739590:CDS |
| ATTATGCTGGTGGTCAGAAG+AGG | 0.640404 | 5_1:-57947796 | Msa0739590:intron |
| CTAAAGTTCTTCCAACCCCA+CGG | 0.643931 | 5_1:+57944395 | None:intergenic |
| AGGTCGATTGGTAAGAAAAG+CGG | 0.647196 | 5_1:-57947908 | Msa0739590:CDS |
| GGTGTCGTTTAGAGGGAGAG+TGG | 0.648540 | 5_1:+57948066 | None:intergenic |
| GAATGAGTTGATTAGTGCGG+TGG | 0.648943 | 5_1:+57948189 | None:intergenic |
| GTAACTGATTCTACTGGCTG+GGG | 0.650058 | 5_1:+57946123 | None:intergenic |
| ATTGATGCATCAAGACCTGG+TGG | 0.651831 | 5_1:-57944166 | Msa0739590:CDS |
| TGAATGGAAAACTAAATAGG+GGG | 0.653528 | 5_1:+57944015 | None:intergenic |
| ACAGAATTACCACCCCTGGT+AGG | 0.657209 | 5_1:+57946267 | None:intergenic |
| CGTATGAGCTTCGATCTCGA+AGG | 0.657519 | 5_1:-57947928 | Msa0739590:CDS |
| ACGCAATACTGCTTTCCGTG+GGG | 0.663360 | 5_1:-57944410 | Msa0739590:CDS |
| GCGAAGGAGGAGAATCATCA+GGG | 0.669439 | 5_1:+57947981 | None:intergenic |
| TCAGGTGAAAGAGAATCGGA+AGG | 0.670173 | 5_1:+57948010 | None:intergenic |
| TCAATGACGGTCCTTTACGG+AGG | 0.675313 | 5_1:-57946065 | Msa0739590:CDS |
| CCACGGAAAGCAGTATTGCG+TGG | 0.679106 | 5_1:+57944412 | None:intergenic |
| TGGCGCTGGAGCAGTAAGTG+GGG | 0.688489 | 5_1:+57944312 | None:intergenic |
| CCACCAGCATAATACTCCTG+CGG | 0.690867 | 5_1:+57947806 | None:intergenic |
| GCTTGTCCAAGATCCTACCA+GGG | 0.692331 | 5_1:-57946280 | Msa0739590:CDS |
| AGTAGAATCAGTTACACATG+TGG | 0.699388 | 5_1:-57946115 | Msa0739590:CDS |
| GCAAAATGCAGAATTCCTTG+AGG | 0.705055 | 5_1:-57946031 | Msa0739590:intron |
| CTTGTCCAAGATCCTACCAG+GGG | 0.706116 | 5_1:-57946279 | Msa0739590:CDS |
| AAGGCGGGATGAAAACTACC+CGG | 0.710643 | 5_1:-57944545 | Msa0739590:intron |
| GATGAATGAGTTGATTAGTG+CGG | 0.723819 | 5_1:+57948186 | None:intergenic |
| GAGAATCGGAAGGTGAAACG+GGG | 0.735440 | 5_1:+57948020 | None:intergenic |
| GAATATCCCTGATTGCATGG+TGG | 0.750491 | 5_1:+57944197 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGCAAATAAATAAATTTTT+AGG | - | chr5_1:57944776-57944795 | Msa0739590:intron | 10.0% |
| !!! | TATTTAAAAAAAAGAGATTT+TGG | - | chr5_1:57945114-57945133 | Msa0739590:intron | 10.0% |
| !! | ATTGTTAAAATTACAAAATA+TGG | + | chr5_1:57946193-57946212 | None:intergenic | 10.0% |
| !!! | ATTTTAATTAGGTAAATATT+TGG | + | chr5_1:57946953-57946972 | None:intergenic | 10.0% |
| !!! | TTTAAAGAATTTAAAATTCT+AGG | + | chr5_1:57947181-57947200 | None:intergenic | 10.0% |
| !! | TAATGATTAATTGTGATATT+AGG | - | chr5_1:57944452-57944471 | Msa0739590:intron | 15.0% |
| !!! | TTTTTACGTCAAAAAAATTT+AGG | - | chr5_1:57944517-57944536 | Msa0739590:intron | 15.0% |
| !! | AAAGTGATTTATTAAACAAA+TGG | - | chr5_1:57944658-57944677 | Msa0739590:intron | 15.0% |
| !!! | TTTTTTTGATAGTAAACAAA+GGG | + | chr5_1:57945054-57945073 | None:intergenic | 15.0% |
| !!! | ATTTTTTTGATAGTAAACAA+AGG | + | chr5_1:57945055-57945074 | None:intergenic | 15.0% |
| !!! | TATTTTTACAAAGGTTTTAT+TGG | - | chr5_1:57946648-57946667 | Msa0739590:intron | 15.0% |
| !!! | ATTTTTACAAAGGTTTTATT+GGG | - | chr5_1:57946649-57946668 | Msa0739590:intron | 15.0% |
| !! | CTAAATTTAATTGAAAATGA+AGG | + | chr5_1:57946855-57946874 | None:intergenic | 15.0% |
| !! | CTATATTTAATTGAAAATGA+AGG | + | chr5_1:57947422-57947441 | None:intergenic | 15.0% |
| !!! | TTACTTATCTATTTTCTTTT+TGG | - | chr5_1:57947682-57947701 | Msa0739590:intron | 15.0% |
| !! | GAAGAAAAATTATGTTTAAA+TGG | - | chr5_1:57948249-57948268 | Msa0739590:CDS | 15.0% |
| !! | TTAATTGTGATATTAGGTTT+AGG | - | chr5_1:57944458-57944477 | Msa0739590:intron | 20.0% |
| !! | AAAAAAGAATATACTTAGAG+TGG | - | chr5_1:57944581-57944600 | Msa0739590:CDS | 20.0% |
| !! | ATTGTATCGTATATTTATTG+TGG | - | chr5_1:57945415-57945434 | Msa0739590:intron | 20.0% |
| !! | TTGTATCGTATATTTATTGT+GGG | - | chr5_1:57945416-57945435 | Msa0739590:intron | 20.0% |
| !!! | AAAGCTTTTTTATTTGATGT+AGG | - | chr5_1:57945467-57945486 | Msa0739590:intron | 20.0% |
| !! | ATAAGATGTTTATACAAACA+GGG | + | chr5_1:57945493-57945512 | None:intergenic | 20.0% |
| !! | AATAAGATGTTTATACAAAC+AGG | + | chr5_1:57945494-57945513 | None:intergenic | 20.0% |
| !!! | ATAATATTTTGTGACTGTTT+GGG | + | chr5_1:57945674-57945693 | None:intergenic | 20.0% |
| !! | AATAAGTCTTTCTAAGTTAA+GGG | + | chr5_1:57945732-57945751 | None:intergenic | 20.0% |
| !!! | TTTTATTTGATGTAATTGAC+AGG | - | chr5_1:57945782-57945801 | Msa0739590:intron | 20.0% |
| !! | ATTTATTGAAAACTATTGCT+TGG | - | chr5_1:57946228-57946247 | Msa0739590:CDS | 20.0% |
| !! | ATAACATAAAATACAAGATG+TGG | + | chr5_1:57946415-57946434 | None:intergenic | 20.0% |
| !!! | TGGAGAATTTATTTTTACAA+AGG | - | chr5_1:57946639-57946658 | Msa0739590:intron | 20.0% |
| !!! | AGAAAATTGTTATTGACAAA+TGG | - | chr5_1:57946689-57946708 | Msa0739590:intron | 20.0% |
| !!! | TAAATATTTGGTTCAAAAGA+GGG | + | chr5_1:57946941-57946960 | None:intergenic | 20.0% |
| !!! | TAAGGAGAGAAATTTTAATT+AGG | + | chr5_1:57946964-57946983 | None:intergenic | 20.0% |
| !! | TTTGAATGGAAAACTAAATA+GGG | + | chr5_1:57948133-57948152 | None:intergenic | 20.0% |
| !! | ATTTGAATGGAAAACTAAAT+AGG | + | chr5_1:57948134-57948153 | None:intergenic | 20.0% |
| !! | CATAATGATTTCAATTTGAA+TGG | + | chr5_1:57948147-57948166 | None:intergenic | 20.0% |
| !!! | ATCTACTTTTATGAATTTCA+CGG | - | chr5_1:57948188-57948207 | Msa0739590:CDS | 20.0% |
| !! | GAAAAATTATGTTTAAATGG+AGG | - | chr5_1:57948252-57948271 | Msa0739590:CDS | 20.0% |
| !! | GCTTTTGTATAGAATTCATA+AGG | + | chr5_1:57944871-57944890 | None:intergenic | 25.0% |
| ! | AAAAATAAGTCAATCCAAAC+AGG | - | chr5_1:57944911-57944930 | Msa0739590:intron | 25.0% |
| ! | CTCTTAGAAACTATTTGAAT+TGG | - | chr5_1:57944934-57944953 | Msa0739590:intron | 25.0% |
| ! | AGTATAAGAGCTTATGATAA+AGG | + | chr5_1:57945239-57945258 | None:intergenic | 25.0% |
| !!! | TAAGCTCTTTTATTTGAAGT+AGG | - | chr5_1:57945301-57945320 | Msa0739590:intron | 25.0% |
| ! | GACATTTGTTTATTCAAACA+GGG | + | chr5_1:57945327-57945346 | None:intergenic | 25.0% |
| ! | AGACATTTGTTTATTCAAAC+AGG | + | chr5_1:57945328-57945347 | None:intergenic | 25.0% |
| ! | ATACAATACAAATATAGCCA+TGG | + | chr5_1:57945402-57945421 | None:intergenic | 25.0% |
| ! | AAAACAACTTATGAACATCA+TGG | - | chr5_1:57945630-57945649 | Msa0739590:intron | 25.0% |
| ! | AAACAACTTATGAACATCAT+GGG | - | chr5_1:57945631-57945650 | Msa0739590:intron | 25.0% |
| !! | CATAATATTTTGTGACTGTT+TGG | + | chr5_1:57945675-57945694 | None:intergenic | 25.0% |
| ! | CAATAAGTCTTTCTAAGTTA+AGG | + | chr5_1:57945733-57945752 | None:intergenic | 25.0% |
| ! | CTTAACTTAGAAAGACTTAT+TGG | - | chr5_1:57945731-57945750 | Msa0739590:intron | 25.0% |
| ! | ATAAAACTAAGTTCCAAGAT+GGG | + | chr5_1:57945768-57945787 | None:intergenic | 25.0% |
| ! | AATAAAACTAAGTTCCAAGA+TGG | + | chr5_1:57945769-57945788 | None:intergenic | 25.0% |
| !! | AAAACAAAAGGTACATTAAC+AGG | + | chr5_1:57945826-57945845 | None:intergenic | 25.0% |
| ! | TTATTCATGTCATCTTCTAA+TGG | - | chr5_1:57946276-57946295 | Msa0739590:CDS | 25.0% |
| ! | TATTCATGTCATCTTCTAAT+GGG | - | chr5_1:57946277-57946296 | Msa0739590:CDS | 25.0% |
| !! | AAATATTTGGTTCAAAAGAG+GGG | + | chr5_1:57946940-57946959 | None:intergenic | 25.0% |
| !! | GTAAATATTTGGTTCAAAAG+AGG | + | chr5_1:57946942-57946961 | None:intergenic | 25.0% |
| !!! | CTTTTTGGCAATATATGTAT+AGG | - | chr5_1:57947697-57947716 | Msa0739590:intron | 25.0% |
| !! | TTTTTGGATAACAACTGAAT+TGG | + | chr5_1:57948089-57948108 | None:intergenic | 25.0% |
| ! | AGTTGTTATCCAAAAACAAT+AGG | - | chr5_1:57948093-57948112 | Msa0739590:CDS | 25.0% |
| ! | TTGAATGGAAAACTAAATAG+GGG | + | chr5_1:57948132-57948151 | None:intergenic | 25.0% |
| ! | AAGTAGATCAATCAATGTTT+AGG | + | chr5_1:57948176-57948195 | None:intergenic | 25.0% |
| AAAATCAGGTGAAAGAGAAT+CGG | + | chr5_1:57944140-57944159 | None:intergenic | 30.0% | |
| TAAAATGTGTGTGATTGCTT+AGG | - | chr5_1:57944421-57944440 | Msa0739590:CDS | 30.0% | |
| AAAATGTGTGTGATTGCTTA+GGG | - | chr5_1:57944422-57944441 | Msa0739590:CDS | 30.0% | |
| AGAATATACTTAGAGTGGTT+TGG | - | chr5_1:57944586-57944605 | Msa0739590:CDS | 30.0% | |
| !! | TAAGCTCTTTTGTTTGACTT+AGG | - | chr5_1:57944709-57944728 | Msa0739590:intron | 30.0% |
| !! | AAGCTCTTTTGTTTGACTTA+GGG | - | chr5_1:57944710-57944729 | Msa0739590:intron | 30.0% |
| AAAAATAAGCCAATCCAAAC+AGG | + | chr5_1:57944736-57944755 | None:intergenic | 30.0% | |
| ! | GAATTGGCTTATTTGAGTTT+AGG | - | chr5_1:57944950-57944969 | Msa0739590:intron | 30.0% |
| ATAAGAGCTTATGATAAAGG+AGG | + | chr5_1:57945236-57945255 | None:intergenic | 30.0% | |
| ! | GCTTTTGATAAACTAAGACA+TGG | + | chr5_1:57945452-57945471 | None:intergenic | 30.0% |
| TATTTGCAGATTATAGCACA+AGG | - | chr5_1:57945510-57945529 | Msa0739590:intron | 30.0% | |
| ! | AAGACTTATTGGTTAGTTAG+AGG | - | chr5_1:57945742-57945761 | Msa0739590:intron | 30.0% |
| !!! | TTTTGTTTTCATTGTTGCAG+CGG | - | chr5_1:57945837-57945856 | Msa0739590:intron | 30.0% |
| !! | TGTGGATGATATTTTTGATC+AGG | - | chr5_1:57945896-57945915 | Msa0739590:intron | 30.0% |
| !! | TATTTTTGATCAGGCTAAAC+AGG | - | chr5_1:57945905-57945924 | Msa0739590:intron | 30.0% |
| TAACAAGTTAAGTTACCTCA+AGG | + | chr5_1:57946130-57946149 | None:intergenic | 30.0% | |
| ATCCACAAGTTGCAAATAAT+GGG | + | chr5_1:57946255-57946274 | None:intergenic | 30.0% | |
| TCATCTTCTAATGGGATATT+GGG | - | chr5_1:57946285-57946304 | Msa0739590:CDS | 30.0% | |
| ! | ACTTTCTGTTTCTCTTGAAT+CGG | - | chr5_1:57946875-57946894 | Msa0739590:intron | 30.0% |
| TGAGGAAATGTAATGTTATG+AGG | - | chr5_1:57947129-57947148 | Msa0739590:intron | 30.0% | |
| GAGGAAATGTAATGTTATGA+GGG | - | chr5_1:57947130-57947149 | Msa0739590:intron | 30.0% | |
| ! | AGTTTCTGTTTCTCTTGAAT+CGG | - | chr5_1:57947442-57947461 | Msa0739590:intron | 30.0% |
| AGATGATGACAATAAACAAG+AGG | + | chr5_1:57947628-57947647 | None:intergenic | 30.0% | |
| TCCAAATCAGTAAGTTGTTT+GGG | + | chr5_1:57948040-57948059 | None:intergenic | 30.0% | |
| TGAATGGAAAACTAAATAGG+GGG | + | chr5_1:57948131-57948150 | None:intergenic | 30.0% | |
| !!! | GAGGTATTTTTTTGCGTAAA+TGG | - | chr5_1:57948271-57948290 | Msa0739590:CDS | 30.0% |
| !!! | GTATTTTTTTGCGTAAATGG+AGG | - | chr5_1:57948274-57948293 | Msa0739590:CDS | 30.0% |
| ACGTGAAGAAACAGAAAGAA+TGG | - | chr5_1:57943898-57943917 | Msa0739590:three_prime_UTR | 35.0% | |
| !! | GATGAATGAGTTGATTAGTG+CGG | + | chr5_1:57943960-57943979 | None:intergenic | 35.0% |
| !! | AAAGAAAAGCGCTTCTTGTT+TGG | + | chr5_1:57943999-57944018 | None:intergenic | 35.0% |
| TAGAATTCATAAGGTCGTCA+AGG | + | chr5_1:57944862-57944881 | None:intergenic | 35.0% | |
| ! | ATAGTTTCTAAGAGCCTGTT+TGG | + | chr5_1:57944928-57944947 | None:intergenic | 35.0% |
| AGCTTATACATAAGCGATCT+AGG | - | chr5_1:57945271-57945290 | Msa0739590:intron | 35.0% | |
| ATCCATAACATGACACACAT+CGG | - | chr5_1:57945376-57945395 | Msa0739590:intron | 35.0% | |
| GCTGCAACAATGAAAACAAA+AGG | + | chr5_1:57945838-57945857 | None:intergenic | 35.0% | |
| ! | ACATGTGTAACTGATTCTAC+TGG | + | chr5_1:57946029-57946048 | None:intergenic | 35.0% |
| AGTAGAATCAGTTACACATG+TGG | - | chr5_1:57946028-57946047 | Msa0739590:intron | 35.0% | |
| !! | AATGGGTTTTCTGTCAATGA+CGG | - | chr5_1:57946065-57946084 | Msa0739590:CDS | 35.0% |
| ! | TCAAGGAATTCTGCATTTTG+CGG | + | chr5_1:57946113-57946132 | None:intergenic | 35.0% |
| TGTTTCCATGAGTTAAGACT+TGG | - | chr5_1:57946157-57946176 | Msa0739590:CDS | 35.0% | |
| CATCCACAAGTTGCAAATAA+TGG | + | chr5_1:57946256-57946275 | None:intergenic | 35.0% | |
| GTCATCTTCTAATGGGATAT+TGG | - | chr5_1:57946284-57946303 | Msa0739590:CDS | 35.0% | |
| TTCTAATGGGATATTGGGTT+TGG | - | chr5_1:57946290-57946309 | Msa0739590:intron | 35.0% | |
| TCTAATGGGATATTGGGTTT+GGG | - | chr5_1:57946291-57946310 | Msa0739590:intron | 35.0% | |
| TTCTATGAAGAGCTTTGCTT+TGG | - | chr5_1:57946800-57946819 | Msa0739590:intron | 35.0% | |
| ! | AGCTTTGCTTTGGATTTACA+AGG | - | chr5_1:57946810-57946829 | Msa0739590:intron | 35.0% |
| ! | GCTTTGCTTTGGATTTACAA+GGG | - | chr5_1:57946811-57946830 | Msa0739590:intron | 35.0% |
| ! | CTTTCTGTTTCTCTTGAATC+GGG | - | chr5_1:57946876-57946895 | Msa0739590:intron | 35.0% |
| TGAGGGAATGTAATGTTATG+AGG | - | chr5_1:57947048-57947067 | Msa0739590:intron | 35.0% | |
| GAGGGAATGTAATGTTATGA+GGG | - | chr5_1:57947049-57947068 | Msa0739590:intron | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | - | chr5_1:57947067-57947086 | Msa0739590:intron | 35.0% | |
| TTGAGGTGAATTCCATTGTT+TGG | - | chr5_1:57947084-57947103 | Msa0739590:intron | 35.0% | |
| TGAATTCCATTGTTTGGATG+AGG | - | chr5_1:57947090-57947109 | Msa0739590:intron | 35.0% | |
| GAATTCCATTGTTTGGATGA+GGG | - | chr5_1:57947091-57947110 | Msa0739590:intron | 35.0% | |
| GGGAATGTAATGTAATGTTG+AGG | - | chr5_1:57947111-57947130 | Msa0739590:intron | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | - | chr5_1:57947067-57947086 | Msa0739590:intron | 35.0% | |
| TGTGTTTGGATGAGGTAATT+TGG | + | chr5_1:57947208-57947227 | None:intergenic | 35.0% | |
| TTCTATGAAGAGCTTTGCTT+TGG | - | chr5_1:57946800-57946819 | Msa0739590:intron | 35.0% | |
| TCTATGAAGAGCTTTGCTTT+GGG | - | chr5_1:57946801-57946820 | Msa0739590:intron | 35.0% | |
| ! | GTTTCTGTTTCTCTTGAATC+GGG | - | chr5_1:57947443-57947462 | Msa0739590:intron | 35.0% |
| ! | ACAATAAACAAGAGGCATAC+CGG | + | chr5_1:57947620-57947639 | None:intergenic | 35.0% |
| AAATTACCAACTGCAGACAA+TGG | - | chr5_1:57948006-57948025 | Msa0739590:CDS | 35.0% | |
| AATTACCAACTGCAGACAAT+GGG | - | chr5_1:57948007-57948026 | Msa0739590:CDS | 35.0% | |
| AAATCAGTAAGTTGTTTGGG+AGG | + | chr5_1:57948037-57948056 | None:intergenic | 35.0% | |
| ! | TCCCAAACAACTTACTGATT+TGG | - | chr5_1:57948036-57948055 | Msa0739590:CDS | 35.0% |
| GTCCAAATCAGTAAGTTGTT+TGG | + | chr5_1:57948041-57948060 | None:intergenic | 35.0% | |
| GAATTTCACGGAATACTCAT+TGG | - | chr5_1:57948200-57948219 | Msa0739590:CDS | 35.0% | |
| TTCACGAAAGCAATTCTGTA+TGG | + | chr5_1:57948232-57948251 | None:intergenic | 35.0% | |
| AAGAGAATCGGAAGGTGAAA+CGG | + | chr5_1:57944128-57944147 | None:intergenic | 40.0% | |
| GAATCATCAGGGTGAAAATC+AGG | + | chr5_1:57944154-57944173 | None:intergenic | 40.0% | |
| AGGTCGATTGGTAAGAAAAG+CGG | - | chr5_1:57944235-57944254 | Msa0739590:CDS | 40.0% | |
| CGGTTCATCAGAATCAGAAT+CGG | + | chr5_1:57944320-57944339 | None:intergenic | 40.0% | |
| ! | GGAAGCAGCTTTTCATTTTC+AGG | - | chr5_1:57945135-57945154 | Msa0739590:intron | 40.0% |
| AAATCAGCTTGTATCACTGG+TGG | + | chr5_1:57945353-57945372 | None:intergenic | 40.0% | |
| CTGAAAACTCTTCAAGGTCT+AGG | - | chr5_1:57945946-57945965 | Msa0739590:intron | 40.0% | |
| ! | TCAAGGTCTAGGAGTTTTAC+TGG | - | chr5_1:57945957-57945976 | Msa0739590:intron | 40.0% |
| ! | TGTAACTGATTCTACTGGCT+GGG | + | chr5_1:57946024-57946043 | None:intergenic | 40.0% |
| ! | TTACACATGTGGTCACCTTT+TGG | - | chr5_1:57946039-57946058 | Msa0739590:CDS | 40.0% |
| AGAAAACCCATTCCTCCAAA+AGG | + | chr5_1:57946057-57946076 | None:intergenic | 40.0% | |
| GCAAAATGCAGAATTCCTTG+AGG | - | chr5_1:57946112-57946131 | Msa0739590:CDS | 40.0% | |
| TTCCATGAGTTAAGACTTGG+TGG | - | chr5_1:57946160-57946179 | Msa0739590:CDS | 40.0% | |
| AACCACCAAGTCTTAACTCA+TGG | + | chr5_1:57946165-57946184 | None:intergenic | 40.0% | |
| GTCCCATTATTTGCAACTTG+TGG | - | chr5_1:57946250-57946269 | Msa0739590:CDS | 40.0% | |
| ! | CTCTATTCAGACTAGTTGCT+GGG | + | chr5_1:57946321-57946340 | None:intergenic | 40.0% |
| ! | TCTCTATTCAGACTAGTTGC+TGG | + | chr5_1:57946322-57946341 | None:intergenic | 40.0% |
| TACAGCATAGCAAGGAGTTA+AGG | + | chr5_1:57946471-57946490 | None:intergenic | 40.0% | |
| AAACGCAATACAGCATAGCA+AGG | + | chr5_1:57946479-57946498 | None:intergenic | 40.0% | |
| CAAATGGTTTGATCTGTCGA+AGG | - | chr5_1:57946705-57946724 | Msa0739590:intron | 40.0% | |
| ! | ATTTGGTTCAAAAGAGGGGA+GGG | + | chr5_1:57946936-57946955 | None:intergenic | 40.0% |
| ! | TATTTGGTTCAAAAGAGGGG+AGG | + | chr5_1:57946937-57946956 | None:intergenic | 40.0% |
| ! | CTCTGTTTAGTTCAACGGAT+GGG | + | chr5_1:57947001-57947020 | None:intergenic | 40.0% |
| ! | TCTCTGTTTAGTTCAACGGA+TGG | + | chr5_1:57947002-57947021 | None:intergenic | 40.0% |
| ! | AGGGTCTCTGTTTAGTTCAA+CGG | + | chr5_1:57947006-57947025 | None:intergenic | 40.0% |
| CTAAACAGAGACCCTTTGTT+TGG | - | chr5_1:57947011-57947030 | Msa0739590:intron | 40.0% | |
| ACATTCCCTCATCCAAACAA+TGG | + | chr5_1:57947099-57947118 | None:intergenic | 40.0% | |
| ACAAAGCCTATGAGTGTGTT+TGG | + | chr5_1:57947222-57947241 | None:intergenic | 40.0% | |
| !! | ACACACTCATAGGCTTTGTT+TGG | - | chr5_1:57947223-57947242 | Msa0739590:intron | 40.0% |
| !! | CACACTCATAGGCTTTGTTT+GGG | - | chr5_1:57947224-57947243 | Msa0739590:intron | 40.0% |
| !!! | CTTTGTTTGGGAGTTTTGAG+TGG | - | chr5_1:57947236-57947255 | Msa0739590:intron | 40.0% |
| TTTGGGAGGTGAGGAATATA+GGG | - | chr5_1:57947274-57947293 | Msa0739590:intron | 40.0% | |
| ! | AGCTTTGCTTTGGGTTTACA+AGG | - | chr5_1:57947377-57947396 | Msa0739590:intron | 40.0% |
| ! | GCTTTGCTTTGGGTTTACAA+GGG | - | chr5_1:57947378-57947397 | Msa0739590:intron | 40.0% |
| CTTCTTTATGCTCTGCATTG+AGG | + | chr5_1:57947516-57947535 | None:intergenic | 40.0% | |
| ! | TCAGTTGGTTCAAGCTCTTT+GGG | + | chr5_1:57947548-57947567 | None:intergenic | 40.0% |
| ! | ATCAGTTGGTTCAAGCTCTT+TGG | + | chr5_1:57947549-57947568 | None:intergenic | 40.0% |
| ! | CAATAAACAAGAGGCATACC+GGG | + | chr5_1:57947619-57947638 | None:intergenic | 40.0% |
| TTAGGTGACAGCAGTTCAAA+TGG | - | chr5_1:57947767-57947786 | Msa0739590:intron | 40.0% | |
| TCTACAACTAAACCCATTGC+TGG | + | chr5_1:57947854-57947873 | None:intergenic | 40.0% | |
| AGATAACCTTAGCTGGATTG+AGG | + | chr5_1:57947894-57947913 | None:intergenic | 40.0% | |
| ATCCAGCTAAGGTTATCTGA+TGG | - | chr5_1:57947896-57947915 | Msa0739590:CDS | 40.0% | |
| TACCATCAGATAACCTTAGC+TGG | + | chr5_1:57947901-57947920 | None:intergenic | 40.0% | |
| GTTATCTGATGGTACACGAA+TGG | - | chr5_1:57947907-57947926 | Msa0739590:CDS | 40.0% | |
| TTCATTGATGCATCAAGACC+TGG | - | chr5_1:57947974-57947993 | Msa0739590:CDS | 40.0% | |
| AAAACTAAATAGGGGGAGAG+GGG | + | chr5_1:57948124-57948143 | None:intergenic | 40.0% | |
| GAAAACTAAATAGGGGGAGA+GGG | + | chr5_1:57948125-57948144 | None:intergenic | 40.0% | |
| GAATCGCTTGATGAGGGTTT+CGG | + | chr5_1:57943935-57943954 | None:intergenic | 45.0% | |
| !! | GAATGAGTTGATTAGTGCGG+TGG | + | chr5_1:57943957-57943976 | None:intergenic | 45.0% |
| !!! | GTCGTTTTGAGGAAGAGTAG+CGG | + | chr5_1:57944104-57944123 | None:intergenic | 45.0% |
| AGAGAATCGGAAGGTGAAAC+GGG | + | chr5_1:57944127-57944146 | None:intergenic | 45.0% | |
| TCAGGTGAAAGAGAATCGGA+AGG | + | chr5_1:57944136-57944155 | None:intergenic | 45.0% | |
| CTTCGAGATCGAAGCTCATA+CGG | + | chr5_1:57944217-57944236 | None:intergenic | 45.0% | |
| ATTGGTAAGAAAAGCGGCTC+TGG | - | chr5_1:57944241-57944260 | Msa0739590:CDS | 45.0% | |
| GTAGTAGGCAAAGTGGGATT+CGG | - | chr5_1:57944263-57944282 | Msa0739590:CDS | 45.0% | |
| TTCTGATTCTGATGAACCGC+AGG | - | chr5_1:57944321-57944340 | Msa0739590:CDS | 45.0% | |
| ATTATGCTGGTGGTCAGAAG+AGG | - | chr5_1:57944347-57944366 | Msa0739590:CDS | 45.0% | |
| ! | TGTTTGACTTAGGGCCTGTT+TGG | - | chr5_1:57944719-57944738 | Msa0739590:intron | 45.0% |
| CGCAAATCAGCTTGTATCAC+TGG | + | chr5_1:57945356-57945375 | None:intergenic | 45.0% | |
| ! | CTTGAAGAGTTTTCAGCAGG+AGG | + | chr5_1:57945942-57945961 | None:intergenic | 45.0% |
| CTCCTGCTGAAAACTCTTCA+AGG | - | chr5_1:57945940-57945959 | Msa0739590:intron | 45.0% | |
| ! | GACCTTGAAGAGTTTTCAGC+AGG | + | chr5_1:57945945-57945964 | None:intergenic | 45.0% |
| ! | GTAACTGATTCTACTGGCTG+GGG | + | chr5_1:57946023-57946042 | None:intergenic | 45.0% |
| ! | GTGTAACTGATTCTACTGGC+TGG | + | chr5_1:57946025-57946044 | None:intergenic | 45.0% |
| !! | TGGTCACCTTTTGGAGGAAT+GGG | - | chr5_1:57946048-57946067 | Msa0739590:CDS | 45.0% |
| CTGTCAATGACGGTCCTTTA+CGG | - | chr5_1:57946075-57946094 | Msa0739590:CDS | 45.0% | |
| ! | TTTAGTTCAACGGATGGGAG+GGG | + | chr5_1:57946996-57947015 | None:intergenic | 45.0% |
| ! | GTTTAGTTCAACGGATGGGA+GGG | + | chr5_1:57946997-57947016 | None:intergenic | 45.0% |
| ! | TGTTTAGTTCAACGGATGGG+AGG | + | chr5_1:57946998-57947017 | None:intergenic | 45.0% |
| ! | ACAGAGACCCTTTGTTTGGA+TGG | - | chr5_1:57947015-57947034 | Msa0739590:intron | 45.0% |
| ! | CAGAGACCCTTTGTTTGGAT+GGG | - | chr5_1:57947016-57947035 | Msa0739590:intron | 45.0% |
| ! | AGAGACCCTTTGTTTGGATG+GGG | - | chr5_1:57947017-57947036 | Msa0739590:intron | 45.0% |
| CATTCCCCCATCCAAACAAA+GGG | + | chr5_1:57947025-57947044 | None:intergenic | 45.0% | |
| ACATTCCCCCATCCAAACAA+AGG | + | chr5_1:57947026-57947045 | None:intergenic | 45.0% | |
| ! | TTGGATGGGGGAATGTTTTG+AGG | - | chr5_1:57947030-57947049 | Msa0739590:intron | 45.0% |
| !! | TGGATGGGGGAATGTTTTGA+GGG | - | chr5_1:57947031-57947050 | Msa0739590:intron | 45.0% |
| CCTATGAGTGTGTTTGGATG+AGG | + | chr5_1:57947216-57947235 | None:intergenic | 45.0% | |
| CCTCATCCAAACACACTCAT+AGG | - | chr5_1:57947213-57947232 | Msa0739590:intron | 45.0% | |
| !!! | TGTTTGGGAGTTTTGAGTGG+AGG | - | chr5_1:57947239-57947258 | Msa0739590:intron | 45.0% |
| !!! | GTTTGGGAGTTTTGAGTGGA+GGG | - | chr5_1:57947240-57947259 | Msa0739590:intron | 45.0% |
| !!! | TTTGGGAGTTTTGAGTGGAG+GGG | - | chr5_1:57947241-57947260 | Msa0739590:intron | 45.0% |
| ! | CTTTGGGAGGTGAGGAATAT+AGG | - | chr5_1:57947273-57947292 | Msa0739590:intron | 45.0% |
| TTGGGAGGTGAGGAATATAG+GGG | - | chr5_1:57947275-57947294 | Msa0739590:intron | 45.0% | |
| CTAAAGTTCTTCCAACCCCA+CGG | + | chr5_1:57947751-57947770 | None:intergenic | 45.0% | |
| TCAAATGGTGAAGCTGCTAG+TGG | - | chr5_1:57947782-57947801 | Msa0739590:intron | 45.0% | |
| TCAATCACCACCATGCAATC+AGG | - | chr5_1:57947939-57947958 | Msa0739590:CDS | 45.0% | |
| CAATCACCACCATGCAATCA+GGG | - | chr5_1:57947940-57947959 | Msa0739590:CDS | 45.0% | |
| GAATATCCCTGATTGCATGG+TGG | + | chr5_1:57947949-57947968 | None:intergenic | 45.0% | |
| CTCGAATATCCCTGATTGCA+TGG | + | chr5_1:57947952-57947971 | None:intergenic | 45.0% | |
| ATTGATGCATCAAGACCTGG+TGG | - | chr5_1:57947977-57947996 | Msa0739590:CDS | 45.0% | |
| TTGATGCATCAAGACCTGGT+GGG | - | chr5_1:57947978-57947997 | Msa0739590:CDS | 45.0% | |
| GAAAACCCATTGTCTGCAGT+TGG | + | chr5_1:57948015-57948034 | None:intergenic | 45.0% | |
| AAACTAAATAGGGGGAGAGG+GGG | + | chr5_1:57948123-57948142 | None:intergenic | 45.0% | |
| GGAAAACTAAATAGGGGGAG+AGG | + | chr5_1:57948126-57948145 | None:intergenic | 45.0% | |
| !!! | TAAATTATTTTATATATTTG+TGG | - | chr5_1:57946619-57946638 | Msa0739590:intron | 5.0% |
| !! | TAGCGGTGGTGTCGTTTAGA+GGG | + | chr5_1:57944087-57944106 | None:intergenic | 50.0% |
| !!! | GTTTTGAGGAAGAGTAGCGG+TGG | + | chr5_1:57944101-57944120 | None:intergenic | 50.0% |
| GAGAATCGGAAGGTGAAACG+GGG | + | chr5_1:57944126-57944145 | None:intergenic | 50.0% | |
| GCGAAGGAGGAGAATCATCA+GGG | + | chr5_1:57944165-57944184 | None:intergenic | 50.0% | |
| TGCGAAGGAGGAGAATCATC+AGG | + | chr5_1:57944166-57944185 | None:intergenic | 50.0% | |
| CGTATGAGCTTCGATCTCGA+AGG | - | chr5_1:57944215-57944234 | Msa0739590:CDS | 50.0% | |
| CTTCGATCTCGAAGGTCGAT+TGG | - | chr5_1:57944223-57944242 | Msa0739590:CDS | 50.0% | |
| ! | AGAAAAGCGGCTCTGGTAGT+AGG | - | chr5_1:57944248-57944267 | Msa0739590:CDS | 50.0% |
| GCTCTGGTAGTAGGCAAAGT+GGG | - | chr5_1:57944257-57944276 | Msa0739590:CDS | 50.0% | |
| !! | GAACCGCAGGAGTATTATGC+TGG | - | chr5_1:57944334-57944353 | Msa0739590:CDS | 50.0% |
| CCACCAGCATAATACTCCTG+CGG | + | chr5_1:57944340-57944359 | None:intergenic | 50.0% | |
| GACTTAGGGCCTGTTTGGAT+TGG | - | chr5_1:57944724-57944743 | Msa0739590:intron | 50.0% | |
| GGCCGATGTGTGTCATGTTA+TGG | + | chr5_1:57945381-57945400 | None:intergenic | 50.0% | |
| AACATGACACACATCGGCCA+TGG | - | chr5_1:57945382-57945401 | Msa0739590:intron | 50.0% | |
| ! | GGTTAGTTAGAGGCCCATCT+TGG | - | chr5_1:57945752-57945771 | Msa0739590:intron | 50.0% |
| TGCTTGTCCAAGATCCTACC+AGG | - | chr5_1:57945862-57945881 | Msa0739590:intron | 50.0% | |
| GCTTGTCCAAGATCCTACCA+GGG | - | chr5_1:57945863-57945882 | Msa0739590:intron | 50.0% | |
| CTTGTCCAAGATCCTACCAG+GGG | - | chr5_1:57945864-57945883 | Msa0739590:intron | 50.0% | |
| ACAGAATTACCACCCCTGGT+AGG | + | chr5_1:57945879-57945898 | None:intergenic | 50.0% | |
| TACCAGGGGTGGTAATTCTG+TGG | - | chr5_1:57945878-57945897 | Msa0739590:intron | 50.0% | |
| ATCCACAGAATTACCACCCC+TGG | + | chr5_1:57945883-57945902 | None:intergenic | 50.0% | |
| ! | CACATGTGGTCACCTTTTGG+AGG | - | chr5_1:57946042-57946061 | Msa0739590:CDS | 50.0% |
| !! | GTGGTCACCTTTTGGAGGAA+TGG | - | chr5_1:57946047-57946066 | Msa0739590:CDS | 50.0% |
| TCAATGACGGTCCTTTACGG+AGG | - | chr5_1:57946078-57946097 | Msa0739590:CDS | 50.0% | |
| GGATCTTCCAACCTCCGTAA+AGG | + | chr5_1:57946092-57946111 | None:intergenic | 50.0% | |
| TGACACGTGAGTTGCGCTAT+AGG | + | chr5_1:57946731-57946750 | None:intergenic | 50.0% | |
| GTTCAAAAGAGGGGAGGGTA+GGG | + | chr5_1:57946931-57946950 | None:intergenic | 50.0% | |
| ! | TGGGAGGGGAGGGATTTTTA+AGG | + | chr5_1:57946982-57947001 | None:intergenic | 50.0% |
| ! | GAGACCCTTTGTTTGGATGG+GGG | - | chr5_1:57947018-57947037 | Msa0739590:intron | 50.0% |
| !!! | GAGTTTTGAGTGGAGGGGAA+GGG | - | chr5_1:57947246-57947265 | Msa0739590:intron | 50.0% |
| ACAGAAGTTCGGCGATCAGT+TGG | + | chr5_1:57947563-57947582 | None:intergenic | 50.0% | |
| GGTTGAGACGGACAGAAGTT+CGG | + | chr5_1:57947574-57947593 | None:intergenic | 50.0% | |
| ! | AGTTTTCATCCCGCCTTGTG+AGG | + | chr5_1:57947595-57947614 | None:intergenic | 50.0% |
| AAGGCGGGATGAAAACTACC+CGG | - | chr5_1:57947598-57947617 | Msa0739590:intron | 50.0% | |
| AGCAGTATTGCGTGGCTTCA+CGG | + | chr5_1:57947726-57947745 | None:intergenic | 50.0% | |
| CACGCAATACTGCTTTCCGT+GGG | - | chr5_1:57947732-57947751 | Msa0739590:intron | 50.0% | |
| ACGCAATACTGCTTTCCGTG+GGG | - | chr5_1:57947733-57947752 | Msa0739590:intron | 50.0% | |
| AATACTGCTTTCCGTGGGGT+TGG | - | chr5_1:57947737-57947756 | Msa0739590:intron | 50.0% | |
| CGTGGGGTTGGAAGAACTTT+AGG | - | chr5_1:57947749-57947768 | Msa0739590:intron | 50.0% | |
| GGACCTAGTCAAACTACTGC+CGG | - | chr5_1:57947803-57947822 | Msa0739590:CDS | 50.0% | |
| CTTAGCTGGATTGAGGTCAC+TGG | + | chr5_1:57947887-57947906 | None:intergenic | 50.0% | |
| CAGTGACCTCAATCCAGCTA+AGG | - | chr5_1:57947885-57947904 | Msa0739590:CDS | 50.0% | |
| TGATGCATCAAGACCTGGTG+GGG | - | chr5_1:57947979-57947998 | Msa0739590:CDS | 50.0% | |
| TGGTAATTTCTTGCCCCACC+AGG | + | chr5_1:57947995-57948014 | None:intergenic | 50.0% | |
| ! | TACCAGCTTGCTCTATGGTC+TGG | + | chr5_1:57948063-57948082 | None:intergenic | 50.0% |
| ! | GGCTATACCAGCTTGCTCTA+TGG | + | chr5_1:57948068-57948087 | None:intergenic | 50.0% |
| ! | GGGGGGGAACCTATTGTTTT+TGG | + | chr5_1:57948105-57948124 | None:intergenic | 50.0% |
| AACTAAATAGGGGGAGAGGG+GGG | + | chr5_1:57948122-57948141 | None:intergenic | 50.0% | |
| GCGGTGGAATCGCTTGATGA+GGG | + | chr5_1:57943941-57943960 | None:intergenic | 55.0% | |
| TGCGGTGGAATCGCTTGATG+AGG | + | chr5_1:57943942-57943961 | None:intergenic | 55.0% | |
| !! | GGTGTCGTTTAGAGGGAGAG+TGG | + | chr5_1:57944080-57944099 | None:intergenic | 55.0% |
| !! | GTAGCGGTGGTGTCGTTTAG+AGG | + | chr5_1:57944088-57944107 | None:intergenic | 55.0% |
| !! | GGTGAAACGGGGTCGTTTTG+AGG | + | chr5_1:57944115-57944134 | None:intergenic | 55.0% |
| AGCTCATACGGAGCACGTGA+CGG | + | chr5_1:57944205-57944224 | None:intergenic | 55.0% | |
| ! | GGCTCTGGTAGTAGGCAAAG+TGG | - | chr5_1:57944256-57944275 | Msa0739590:CDS | 55.0% |
| !! | CCGCAGGAGTATTATGCTGG+TGG | - | chr5_1:57944337-57944356 | Msa0739590:CDS | 55.0% |
| TACCACCCCTGGTAGGATCT+TGG | + | chr5_1:57945872-57945891 | None:intergenic | 55.0% | |
| GGAACCGCCAGATTGCTTTC+CGG | - | chr5_1:57945978-57945997 | Msa0739590:intron | 55.0% | |
| TGACGGTCCTTTACGGAGGT+TGG | - | chr5_1:57946082-57946101 | Msa0739590:CDS | 55.0% | |
| GGTTCAAAAGAGGGGAGGGT+AGG | + | chr5_1:57946932-57946951 | None:intergenic | 55.0% | |
| !!! | GGAGTTTTGAGTGGAGGGGA+AGG | - | chr5_1:57947245-57947264 | Msa0739590:intron | 55.0% |
| TTTGAGTGGAGGGGAAGGGA+AGG | - | chr5_1:57947250-57947269 | Msa0739590:intron | 55.0% | |
| CTGTCCGTCTCAACCTCACA+AGG | - | chr5_1:57947579-57947598 | Msa0739590:intron | 55.0% | |
| TCCGTCTCAACCTCACAAGG+CGG | - | chr5_1:57947582-57947601 | Msa0739590:intron | 55.0% | |
| GCAGTATTGCGTGGCTTCAC+GGG | + | chr5_1:57947725-57947744 | None:intergenic | 55.0% | |
| CCACGGAAAGCAGTATTGCG+TGG | + | chr5_1:57947734-57947753 | None:intergenic | 55.0% | |
| CCACGCAATACTGCTTTCCG+TGG | - | chr5_1:57947731-57947750 | Msa0739590:intron | 55.0% | |
| ! | GCACCGGCAGTAGTTTGACT+AGG | + | chr5_1:57947809-57947828 | None:intergenic | 55.0% |
| ! | AGCAGTAAGTGGGGAAGCAC+CGG | + | chr5_1:57947825-57947844 | None:intergenic | 55.0% |
| ACTAAACCCATTGCTGGCGC+TGG | + | chr5_1:57947848-57947867 | None:intergenic | 55.0% | |
| GACCAGACCATAGAGCAAGC+TGG | - | chr5_1:57948058-57948077 | Msa0739590:CDS | 55.0% | |
| ACTAAATAGGGGGAGAGGGG+GGG | + | chr5_1:57948121-57948140 | None:intergenic | 55.0% | |
| TGAGACGGCGATTGCGAAGG+AGG | + | chr5_1:57944178-57944197 | None:intergenic | 60.0% | |
| GACTGAGACGGCGATTGCGA+AGG | + | chr5_1:57944181-57944200 | None:intergenic | 60.0% | |
| GCACGTGACGGTGACTGAGA+CGG | + | chr5_1:57944193-57944212 | None:intergenic | 60.0% | |
| GTCCAAGATCCTACCAGGGG+TGG | - | chr5_1:57945867-57945886 | Msa0739590:intron | 60.0% | |
| CTCGCCGGAAAGCAATCTGG+CGG | + | chr5_1:57945985-57946004 | None:intergenic | 60.0% | |
| TGCCTCGCCGGAAAGCAATC+TGG | + | chr5_1:57945988-57946007 | None:intergenic | 60.0% | |
| ! | TCTACTGGCTGGGGAGCAGA+TGG | + | chr5_1:57946014-57946033 | None:intergenic | 60.0% |
| GTTCAACGGATGGGAGGGGA+GGG | + | chr5_1:57946992-57947011 | None:intergenic | 60.0% | |
| AGTTCAACGGATGGGAGGGG+AGG | + | chr5_1:57946993-57947012 | None:intergenic | 60.0% | |
| TGGAGGGGAAGGGAAGGCTT+TGG | - | chr5_1:57947256-57947275 | Msa0739590:intron | 60.0% | |
| GGAGGGGAAGGGAAGGCTTT+GGG | - | chr5_1:57947257-57947276 | Msa0739590:intron | 60.0% | |
| !! | AGGGAAGGCTTTGGGAGGTG+AGG | - | chr5_1:57947265-57947284 | Msa0739590:intron | 60.0% |
| CCCGCCTTGTGAGGTTGAGA+CGG | + | chr5_1:57947586-57947605 | None:intergenic | 60.0% | |
| CCGTCTCAACCTCACAAGGC+GGG | - | chr5_1:57947583-57947602 | Msa0739590:intron | 60.0% | |
| ! | TGGCGCTGGAGCAGTAAGTG+GGG | + | chr5_1:57947834-57947853 | None:intergenic | 60.0% |
| ! | CTGGCGCTGGAGCAGTAAGT+GGG | + | chr5_1:57947835-57947854 | None:intergenic | 60.0% |
| TACTGCTCCAGCGCCAGCAA+TGG | - | chr5_1:57947838-57947857 | Msa0739590:CDS | 60.0% | |
| ACTGCTCCAGCGCCAGCAAT+GGG | - | chr5_1:57947839-57947858 | Msa0739590:CDS | 60.0% | |
| CGCCAGATTGCTTTCCGGCG+AGG | - | chr5_1:57945983-57946002 | Msa0739590:intron | 65.0% | |
| AGCAGATGGCACTGCCTCGC+CGG | + | chr5_1:57946000-57946019 | None:intergenic | 65.0% | |
| !! | GGGGAAGGGAAGGCTTTGGG+AGG | - | chr5_1:57947260-57947279 | Msa0739590:intron | 65.0% |
| ! | GCTGGCGCTGGAGCAGTAAG+TGG | + | chr5_1:57947836-57947855 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 57943857 | 57948308 | 57943857 | ID=Msa0739590;Name=Msa0739590 |
| chr5_1 | mRNA | 57943857 | 57948308 | 57943857 | ID=Msa0739590-mRNA-1;Parent=Msa0739590;Name=Msa0739590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=15|0.66|0.75|1|1|1|4|194|418 |
| chr5_1 | exon | 57943857 | 57944446 | 57943857 | ID=Msa0739590-mRNA-1:exon:16504;Parent=Msa0739590-mRNA-1 |
| chr5_1 | exon | 57944546 | 57944632 | 57944546 | ID=Msa0739590-mRNA-1:exon:16503;Parent=Msa0739590-mRNA-1 |
| chr5_1 | exon | 57946032 | 57946308 | 57946032 | ID=Msa0739590-mRNA-1:exon:16502;Parent=Msa0739590-mRNA-1 |
| chr5_1 | exon | 57947797 | 57948308 | 57947797 | ID=Msa0739590-mRNA-1:exon:16501;Parent=Msa0739590-mRNA-1 |
| chr5_1 | five_prime_UTR | 57948294 | 57948308 | 57948294 | ID=Msa0739590-mRNA-1:five_prime_utr;Parent=Msa0739590-mRNA-1 |
| chr5_1 | CDS | 57947797 | 57948293 | 57947797 | ID=Msa0739590-mRNA-1:cds;Parent=Msa0739590-mRNA-1 |
| chr5_1 | CDS | 57946032 | 57946308 | 57946032 | ID=Msa0739590-mRNA-1:cds;Parent=Msa0739590-mRNA-1 |
| chr5_1 | CDS | 57944546 | 57944632 | 57944546 | ID=Msa0739590-mRNA-1:cds;Parent=Msa0739590-mRNA-1 |
| chr5_1 | CDS | 57944051 | 57944446 | 57944051 | ID=Msa0739590-mRNA-1:cds;Parent=Msa0739590-mRNA-1 |
| chr5_1 | three_prime_UTR | 57943857 | 57944050 | 57943857 | ID=Msa0739590-mRNA-1:three_prime_utr;Parent=Msa0739590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
