Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739690 | AES99907.2 | 63.248 | 234 | 38 | 4 | 1 | 186 | 1 | 234 | 8.05e-86 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739690 | sp|A8R7E6|CERK1_ARATH | 52.252 | 111 | 52 | 1 | 76 | 186 | 104 | 213 | 5.07e-32 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739690 | G7K7M3 | 63.248 | 234 | 38 | 4 | 1 | 186 | 1 | 234 | 3.84e-86 | 273 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0739690 | Msa0751260 | 0.807473 | 4.967843e-50 | -8.615850e-47 |
| Msa0739690 | Msa0758230 | 0.802358 | 5.826708e-49 | -8.615850e-47 |
| Msa0739690 | Msa0795070 | 0.805477 | 1.309988e-49 | -8.615850e-47 |
| Msa0187030 | Msa0739690 | 0.813990 | 1.934479e-51 | -8.615850e-47 |
| Msa0579660 | Msa0739690 | 0.803486 | 3.406442e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739690 | MtrunA17_Chr5g0439571 | 63.248 | 234 | 38 | 4 | 1 | 186 | 1 | 234 | 5.69e-89 | 273 |
| Msa0739690 | MtrunA17_Chr5g0439601 | 71.845 | 103 | 29 | 0 | 84 | 186 | 109 | 211 | 1.08e-46 | 162 |
| Msa0739690 | MtrunA17_Chr5g0439621 | 67.961 | 103 | 33 | 0 | 84 | 186 | 135 | 237 | 5.86e-44 | 155 |
| Msa0739690 | MtrunA17_Chr5g0439561 | 67.308 | 104 | 34 | 0 | 83 | 186 | 126 | 229 | 8.88e-44 | 154 |
| Msa0739690 | MtrunA17_Chr5g0439801 | 67.290 | 107 | 29 | 1 | 81 | 187 | 104 | 204 | 9.88e-44 | 153 |
| Msa0739690 | MtrunA17_Chr3g0119241 | 55.340 | 103 | 45 | 1 | 84 | 186 | 114 | 215 | 8.01e-35 | 129 |
| Msa0739690 | MtrunA17_Chr5g0439701 | 53.398 | 103 | 48 | 0 | 84 | 186 | 111 | 213 | 1.49e-32 | 122 |
| Msa0739690 | MtrunA17_Chr5g0439631 | 49.533 | 107 | 54 | 0 | 80 | 186 | 106 | 212 | 9.09e-29 | 112 |
| Msa0739690 | MtrunA17_Chr2g0289131 | 52.427 | 103 | 48 | 1 | 84 | 186 | 103 | 204 | 5.68e-28 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739690 | AT3G21630.1 | 52.252 | 111 | 52 | 1 | 76 | 186 | 104 | 213 | 5.15e-33 | 124 |
Find 24 sgRNAs with CRISPR-Local
Find 438 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAGGTTTCTATGGATTA+TGG | 0.271365 | 5_1:+58056900 | Msa0739690:CDS |
| TGGGAATAGAGAGGTTTCTA+TGG | 0.347126 | 5_1:+58056893 | Msa0739690:CDS |
| ACTGGTGTATATGTTTCTTC+TGG | 0.357855 | 5_1:-58056753 | None:intergenic |
| CAAATTTGACCACTGATGTT+TGG | 0.361180 | 5_1:+58056793 | Msa0739690:CDS |
| ACATTAATCATTGCAAAATC+AGG | 0.434442 | 5_1:-58056852 | None:intergenic |
| TCTTAGAAGTGAGGATACTT+TGG | 0.436994 | 5_1:+58056941 | Msa0739690:CDS |
| GCAAAATCAGGAATATTAGT+TGG | 0.445045 | 5_1:-58056840 | None:intergenic |
| AAGGTTGGAAACATTGGTTA+AGG | 0.496788 | 5_1:-58050765 | None:intergenic |
| TTACTGTTAATTGTTCTTGT+GGG | 0.501993 | 5_1:+58056874 | Msa0739690:CDS |
| CCTTGGCTGAAATCAACACC+AGG | 0.520483 | 5_1:-58057017 | None:intergenic |
| GTTACTGTTAATTGTTCTTG+TGG | 0.522673 | 5_1:+58056873 | Msa0739690:CDS |
| AAAGTATCCTCACTTCTAAG+AGG | 0.542669 | 5_1:-58056939 | None:intergenic |
| GTTGATTTCAGCCAAGGAAG+TGG | 0.544635 | 5_1:+58057023 | Msa0739690:CDS |
| TACTTTGGAGTCTATTGCAA+AGG | 0.546522 | 5_1:+58056956 | Msa0739690:CDS |
| CCTGGTGTTGATTTCAGCCA+AGG | 0.556316 | 5_1:+58057017 | Msa0739690:CDS |
| TTGTTCTTGTGGGAATAGAG+AGG | 0.566551 | 5_1:+58056884 | Msa0739690:CDS |
| TGCAAAGGATACTAAGATTG+AGG | 0.568127 | 5_1:+58056971 | Msa0739690:CDS |
| ATTGAGTTGAATATAACAAG+TGG | 0.582429 | 5_1:-58050626 | None:intergenic |
| ACAGAATCAAAGTGTAACAA+AGG | 0.599649 | 5_1:+58050716 | Msa0739690:CDS |
| TACATATCCTCTTAGAAGTG+AGG | 0.615021 | 5_1:+58056932 | Msa0739690:CDS |
| TCTGTTATGACTATGAATGA+TGG | 0.620743 | 5_1:-58050698 | None:intergenic |
| TTGAGGCTGAGTTGTTGCAG+AGG | 0.630228 | 5_1:+58056988 | Msa0739690:CDS |
| CTTGGCTGAAATCAACACCA+GGG | 0.706559 | 5_1:-58057016 | None:intergenic |
| TTGTTGCAGAGGTATAACCC+TGG | 0.751720 | 5_1:+58056999 | Msa0739690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTATTTTAATAATTTTA+AGG | - | chr5_1:58051322-58051341 | None:intergenic | 0.0% |
| !!! | ATATTATTTTAATAATTTTA+AGG | - | chr5_1:58051322-58051341 | None:intergenic | 0.0% |
| !! | ATTGTTTAATTATATAACTT+TGG | + | chr5_1:58054793-58054812 | Msa0739690:intron | 10.0% |
| !!! | TAATGTTTGAAATATATGTA+AGG | - | chr5_1:58050787-58050806 | None:intergenic | 15.0% |
| !!! | TAATACCATATTAATTTGAA+CGG | - | chr5_1:58051183-58051202 | None:intergenic | 15.0% |
| !!! | TTAATAATTTTAAGGAGAAA+TGG | - | chr5_1:58051314-58051333 | None:intergenic | 15.0% |
| !! | AAAAAAATTGAAGTAATTCT+TGG | - | chr5_1:58053387-58053406 | None:intergenic | 15.0% |
| !!! | ACTTCAATTTTTTTTTGTTT+AGG | + | chr5_1:58053393-58053412 | Msa0739690:intron | 15.0% |
| !! | AAGTTAGATAATTATTTGAA+TGG | - | chr5_1:58053618-58053637 | None:intergenic | 15.0% |
| !! | TTTAAAAATTAAGAACTAGT+GGG | - | chr5_1:58054210-58054229 | None:intergenic | 15.0% |
| !!! | ACTAGTTCTTAATTTTTAAA+GGG | + | chr5_1:58054210-58054229 | Msa0739690:intron | 15.0% |
| !! | TCATATAAATTAGAATTTAG+AGG | - | chr5_1:58054737-58054756 | None:intergenic | 15.0% |
| !! | ACAAAACATAAAAAATTGTT+TGG | - | chr5_1:58055255-58055274 | None:intergenic | 15.0% |
| !!! | TAATACCATATTAATTTGAA+CGG | - | chr5_1:58051183-58051202 | None:intergenic | 15.0% |
| !!! | TTAATAATTTTAAGGAGAAA+TGG | - | chr5_1:58051314-58051333 | None:intergenic | 15.0% |
| !!! | TTCACTCTTTTTGTTTTTAT+TGG | - | chr5_1:58050852-58050871 | None:intergenic | 20.0% |
| !! | GTATTATTACCATTCTATTA+TGG | + | chr5_1:58051197-58051216 | Msa0739690:intron | 20.0% |
| !! | TTCGATAATATATGATTCTT+CGG | - | chr5_1:58051395-58051414 | None:intergenic | 20.0% |
| !! | AAGAATCATATATTATCGAA+GGG | + | chr5_1:58051395-58051414 | Msa0739690:intron | 20.0% |
| !!! | TTTTCTTAATTGGAAATATC+CGG | + | chr5_1:58051700-58051719 | Msa0739690:intron | 20.0% |
| !! | ACTAGTAAGTGTTTATATAT+GGG | - | chr5_1:58051926-58051945 | None:intergenic | 20.0% |
| !! | AACTAGTAAGTGTTTATATA+TGG | - | chr5_1:58051927-58051946 | None:intergenic | 20.0% |
| !! | ATATATAAACACTTACTAGT+TGG | + | chr5_1:58051926-58051945 | Msa0739690:intron | 20.0% |
| !! | TATATAAACACTTACTAGTT+GGG | + | chr5_1:58051927-58051946 | Msa0739690:intron | 20.0% |
| !! | TTAATTCTAGTGAAGAAAAT+TGG | - | chr5_1:58052021-58052040 | None:intergenic | 20.0% |
| !! | TTGTATATTAGCAAATCTTA+TGG | - | chr5_1:58052107-58052126 | None:intergenic | 20.0% |
| !!! | TAAGATTTGCTAATATACAA+AGG | + | chr5_1:58052107-58052126 | Msa0739690:intron | 20.0% |
| !! | ATTAAGAATCGTTATTACAA+TGG | - | chr5_1:58052762-58052781 | None:intergenic | 20.0% |
| !! | AGTAACATATTGTACTTAAA+TGG | - | chr5_1:58053043-58053062 | None:intergenic | 20.0% |
| !! | TTAAAAATTAAGAACTAGTG+GGG | - | chr5_1:58054209-58054228 | None:intergenic | 20.0% |
| !!! | CTTTAAAAATTAAGAACTAG+TGG | - | chr5_1:58054211-58054230 | None:intergenic | 20.0% |
| !!! | CACTAGTTCTTAATTTTTAA+AGG | + | chr5_1:58054209-58054228 | Msa0739690:intron | 20.0% |
| !!! | AATTTTAAACTTGAGTAACT+TGG | - | chr5_1:58054827-58054846 | None:intergenic | 20.0% |
| !! | TATGCAATAAGGAAAATAAA+TGG | - | chr5_1:58055072-58055091 | None:intergenic | 20.0% |
| !! | AAACTTGTAAATATGCAATA+AGG | - | chr5_1:58055083-58055102 | None:intergenic | 20.0% |
| !! | TTATTGCATATTTACAAGTT+TGG | + | chr5_1:58055082-58055101 | Msa0739690:intron | 20.0% |
| !! | ATTTATCCTTAATGTATCTA+GGG | + | chr5_1:58055430-58055449 | Msa0739690:intron | 20.0% |
| !! | GTATTATTACCATTCTATTA+TGG | + | chr5_1:58051197-58051216 | Msa0739690:intron | 20.0% |
| !! | TTCGATAATATATGATTCTT+CGG | - | chr5_1:58051395-58051414 | None:intergenic | 20.0% |
| !! | AAGAATCATATATTATCGAA+GGG | + | chr5_1:58051395-58051414 | Msa0739690:intron | 20.0% |
| !!! | TTTTCTTAATTGGAAATATC+CGG | + | chr5_1:58051700-58051719 | Msa0739690:intron | 20.0% |
| !! | ACTAGTAAGTGTTTATATAT+GGG | - | chr5_1:58051926-58051945 | None:intergenic | 20.0% |
| !! | AACTAGTAAGTGTTTATATA+TGG | - | chr5_1:58051927-58051946 | None:intergenic | 20.0% |
| !! | ATATATAAACACTTACTAGT+TGG | + | chr5_1:58051926-58051945 | Msa0739690:intron | 20.0% |
| !! | TATATAAACACTTACTAGTT+GGG | + | chr5_1:58051927-58051946 | Msa0739690:intron | 20.0% |
| !! | TTAATTCTAGTGAAGAAAAT+TGG | - | chr5_1:58052021-58052040 | None:intergenic | 20.0% |
| !!! | ATTGAGTTGAATATAACAAG+TGG | - | chr5_1:58050629-58050648 | None:intergenic | 25.0% |
| ! | AAAAAGTAAGAAACTGAAAC+TGG | - | chr5_1:58050657-58050676 | None:intergenic | 25.0% |
| !! | GTTTGAAATATATGTAAGGT+TGG | - | chr5_1:58050783-58050802 | None:intergenic | 25.0% |
| ! | GAGATTCAAATTTAACAGTT+TGG | - | chr5_1:58050901-58050920 | None:intergenic | 25.0% |
| !!! | ATAATTTTAAGGAGAAATGG+TGG | - | chr5_1:58051311-58051330 | None:intergenic | 25.0% |
| ! | GAAGAATCATATATTATCGA+AGG | + | chr5_1:58051394-58051413 | Msa0739690:intron | 25.0% |
| !!! | AACGATTTGTTAAAATCGAA+AGG | + | chr5_1:58051498-58051517 | Msa0739690:intron | 25.0% |
| !!! | ACGATTTGTTAAAATCGAAA+GGG | + | chr5_1:58051499-58051518 | Msa0739690:intron | 25.0% |
| ! | ATATAAACACTTACTAGTTG+GGG | + | chr5_1:58051928-58051947 | Msa0739690:intron | 25.0% |
| !! | TTTAGAATACACCTATGAAA+AGG | - | chr5_1:58052236-58052255 | None:intergenic | 25.0% |
| ! | AATATGTGATTGCAAGTTTA+CGG | + | chr5_1:58053276-58053295 | Msa0739690:intron | 25.0% |
| !! | CTGAAAAATTTTGCAATTCA+TGG | - | chr5_1:58053660-58053679 | None:intergenic | 25.0% |
| !! | CATGAATTGCAAAATTTTTC+AGG | + | chr5_1:58053658-58053677 | Msa0739690:intron | 25.0% |
| ! | AAAAAAGAACTAAAACCTGA+TGG | - | chr5_1:58053897-58053916 | None:intergenic | 25.0% |
| ! | TAAAGAAGTTATATCCTCAT+TGG | - | chr5_1:58054040-58054059 | None:intergenic | 25.0% |
| ! | ATGAGGATATAACTTCTTTA+AGG | + | chr5_1:58054040-58054059 | Msa0739690:intron | 25.0% |
| ! | TATGAACTTGGTTTATACAT+TGG | - | chr5_1:58054082-58054101 | None:intergenic | 25.0% |
| ! | TAAAAATTAAGAACTAGTGG+GGG | - | chr5_1:58054208-58054227 | None:intergenic | 25.0% |
| ! | CTATGATCACTTTAACATTT+AGG | + | chr5_1:58054347-58054366 | Msa0739690:intron | 25.0% |
| ! | CGATAAATAACGAAACATAT+AGG | - | chr5_1:58054381-58054400 | None:intergenic | 25.0% |
| !!! | TTGTCTTATTTTTCGAACTT+GGG | - | chr5_1:58054488-58054507 | None:intergenic | 25.0% |
| !! | AGAATTTTTGTTCTTAGACT+TGG | + | chr5_1:58054542-58054561 | Msa0739690:intron | 25.0% |
| !! | GAATTTTTGTTCTTAGACTT+GGG | + | chr5_1:58054543-58054562 | Msa0739690:intron | 25.0% |
| !! | TTATTGATGACTGTAAACTT+TGG | - | chr5_1:58054633-58054652 | None:intergenic | 25.0% |
| ! | ACATAAAAAATTGTTTGGAG+CGG | - | chr5_1:58055250-58055269 | None:intergenic | 25.0% |
| ! | GATTTATCCTTAATGTATCT+AGG | + | chr5_1:58055429-58055448 | Msa0739690:intron | 25.0% |
| !!! | CGTCTTAAAATTGTTGTTTT+TGG | + | chr5_1:58055503-58055522 | Msa0739690:intron | 25.0% |
| ! | GAGATTCAAATTTAACAGTT+TGG | - | chr5_1:58050901-58050920 | None:intergenic | 25.0% |
| !!! | ATAATTTTAAGGAGAAATGG+TGG | - | chr5_1:58051311-58051330 | None:intergenic | 25.0% |
| ! | GAAGAATCATATATTATCGA+AGG | + | chr5_1:58051394-58051413 | Msa0739690:intron | 25.0% |
| !!! | AACGATTTGTTAAAATCGAA+AGG | + | chr5_1:58051498-58051517 | Msa0739690:intron | 25.0% |
| !!! | ACGATTTGTTAAAATCGAAA+GGG | + | chr5_1:58051499-58051518 | Msa0739690:intron | 25.0% |
| ! | ATATAAACACTTACTAGTTG+GGG | + | chr5_1:58051928-58051947 | Msa0739690:intron | 25.0% |
| ! | ACATTAATCATTGCAAAATC+AGG | - | chr5_1:58056855-58056874 | None:intergenic | 25.0% |
| ! | TTACTGTTAATTGTTCTTGT+GGG | + | chr5_1:58056874-58056893 | Msa0739690:CDS | 25.0% |
| TCTGTTATGACTATGAATGA+TGG | - | chr5_1:58050701-58050720 | None:intergenic | 30.0% | |
| ACAGAATCAAAGTGTAACAA+AGG | + | chr5_1:58050716-58050735 | Msa0739690:CDS | 30.0% | |
| ATATGTAAGGTTGGAAACAT+TGG | - | chr5_1:58050774-58050793 | None:intergenic | 30.0% | |
| TTGAGGATTTGTAAGAACAT+TGG | - | chr5_1:58050816-58050835 | None:intergenic | 30.0% | |
| !!! | ATGTTCCTTTCTGTTGTTTT+TGG | + | chr5_1:58050871-58050890 | Msa0739690:intron | 30.0% |
| GAAATCCAAAAACAACAGAA+AGG | - | chr5_1:58050879-58050898 | None:intergenic | 30.0% | |
| AGAATTACACCCTCAAAATA+TGG | + | chr5_1:58051103-58051122 | Msa0739690:intron | 30.0% | |
| CGAAACCGTTCAAATTAATA+TGG | + | chr5_1:58051175-58051194 | Msa0739690:intron | 30.0% | |
| !!! | ATGTTTTGGAGAAGTTAGAA+TGG | - | chr5_1:58051253-58051272 | None:intergenic | 30.0% |
| ! | GTAGTGTCATATTCATGTTT+TGG | - | chr5_1:58051267-58051286 | None:intergenic | 30.0% |
| ! | TTTTATAGGCAGAGTTACTT+GGG | + | chr5_1:58051595-58051614 | Msa0739690:intron | 30.0% |
| TAAAAATGTCCCACATTGAA+GGG | - | chr5_1:58051957-58051976 | None:intergenic | 30.0% | |
| TTAAAAATGTCCCACATTGA+AGG | - | chr5_1:58051958-58051977 | None:intergenic | 30.0% | |
| CTATGAAAAAACTAGTGTGT+GGG | - | chr5_1:58051987-58052006 | None:intergenic | 30.0% | |
| ACTATGAAAAAACTAGTGTG+TGG | - | chr5_1:58051988-58052007 | None:intergenic | 30.0% | |
| !!! | AAACCATTTTGAAGTCAAGT+GGG | - | chr5_1:58052062-58052081 | None:intergenic | 30.0% |
| ATCTATACTCTATGTTGAGT+GGG | - | chr5_1:58052401-58052420 | None:intergenic | 30.0% | |
| ! | TTAGAGAGTGTATCTCTAAA+TGG | - | chr5_1:58052704-58052723 | None:intergenic | 30.0% |
| AAAGAATATACGAGCATCAT+TGG | - | chr5_1:58053217-58053236 | None:intergenic | 30.0% | |
| TAAAATAAACTCCTGAGGAA+TGG | - | chr5_1:58053593-58053612 | None:intergenic | 30.0% | |
| AATTCATGGACAAGAAAACA+AGG | - | chr5_1:58053646-58053665 | None:intergenic | 30.0% | |
| !! | TCTTCTAGTTCACCATAAAA+AGG | + | chr5_1:58053700-58053719 | Msa0739690:intron | 30.0% |
| ! | ATGTGAAAGTTGCCTTTTTA+TGG | - | chr5_1:58053715-58053734 | None:intergenic | 30.0% |
| !! | GAGTACTTTCGAGTTATAAA+CGG | + | chr5_1:58053742-58053761 | Msa0739690:intron | 30.0% |
| GTCTAACAATACATGAAACT+TGG | - | chr5_1:58053969-58053988 | None:intergenic | 30.0% | |
| ! | ATTGCTAAAGAGTATGAACT+TGG | - | chr5_1:58054094-58054113 | None:intergenic | 30.0% |
| CTTTAACTAAAGAATAGTGG+GGG | - | chr5_1:58054289-58054308 | None:intergenic | 30.0% | |
| CCTTTAACTAAAGAATAGTG+GGG | - | chr5_1:58054290-58054309 | None:intergenic | 30.0% | |
| CCCTTTAACTAAAGAATAGT+GGG | - | chr5_1:58054291-58054310 | None:intergenic | 30.0% | |
| CCCACTATTCTTTAGTTAAA+GGG | + | chr5_1:58054288-58054307 | Msa0739690:intron | 30.0% | |
| CCACTATTCTTTAGTTAAAG+GGG | + | chr5_1:58054289-58054308 | Msa0739690:intron | 30.0% | |
| CCTATGAATATGTATTCATC+GGG | - | chr5_1:58054408-58054427 | None:intergenic | 30.0% | |
| GCCTATGAATATGTATTCAT+CGG | - | chr5_1:58054409-58054428 | None:intergenic | 30.0% | |
| !!! | CTTGTCTTATTTTTCGAACT+TGG | - | chr5_1:58054489-58054508 | None:intergenic | 30.0% |
| GTTCGAAAAATAAGACAAGT+TGG | + | chr5_1:58054490-58054509 | Msa0739690:intron | 30.0% | |
| CACACAACTAATAACATAGA+AGG | + | chr5_1:58054891-58054910 | Msa0739690:intron | 30.0% | |
| TAAACATTGATATCACGTAC+TGG | - | chr5_1:58055163-58055182 | None:intergenic | 30.0% | |
| !!! | GCAAGGTTGTTATTTTGTTA+TGG | - | chr5_1:58055214-58055233 | None:intergenic | 30.0% |
| GCGGAAAATAAAATAATGCA+AGG | - | chr5_1:58055231-58055250 | None:intergenic | 30.0% | |
| ACCTCAATATGTAACTTCTT+CGG | + | chr5_1:58055461-58055480 | Msa0739690:intron | 30.0% | |
| AGAATTACACCCTCAAAATA+TGG | + | chr5_1:58051103-58051122 | Msa0739690:intron | 30.0% | |
| CGAAACCGTTCAAATTAATA+TGG | + | chr5_1:58051175-58051194 | Msa0739690:intron | 30.0% | |
| !!! | ATGTTTTGGAGAAGTTAGAA+TGG | - | chr5_1:58051253-58051272 | None:intergenic | 30.0% |
| ! | GTAGTGTCATATTCATGTTT+TGG | - | chr5_1:58051267-58051286 | None:intergenic | 30.0% |
| ! | TTTTATAGGCAGAGTTACTT+GGG | + | chr5_1:58051595-58051614 | Msa0739690:intron | 30.0% |
| TAAAAATGTCCCACATTGAA+GGG | - | chr5_1:58051957-58051976 | None:intergenic | 30.0% | |
| TTAAAAATGTCCCACATTGA+AGG | - | chr5_1:58051958-58051977 | None:intergenic | 30.0% | |
| CTATGAAAAAACTAGTGTGT+GGG | - | chr5_1:58051987-58052006 | None:intergenic | 30.0% | |
| ACTATGAAAAAACTAGTGTG+TGG | - | chr5_1:58051988-58052007 | None:intergenic | 30.0% | |
| GCAAAATCAGGAATATTAGT+TGG | - | chr5_1:58056843-58056862 | None:intergenic | 30.0% | |
| GTTACTGTTAATTGTTCTTG+TGG | + | chr5_1:58056873-58056892 | Msa0739690:CDS | 30.0% | |
| ! | AAGGTTGGAAACATTGGTTA+AGG | - | chr5_1:58050768-58050787 | None:intergenic | 35.0% |
| !! | TTGGTGATGATGATATCTTG+AGG | - | chr5_1:58050833-58050852 | None:intergenic | 35.0% |
| CTTCGGTAGATGATAGAATT+TGG | - | chr5_1:58050923-58050942 | None:intergenic | 35.0% | |
| ACTCAACCTAGTAACAACTT+CGG | - | chr5_1:58050940-58050959 | None:intergenic | 35.0% | |
| TTAATCGAACAGTTGTAGCT+GGG | - | chr5_1:58051057-58051076 | None:intergenic | 35.0% | |
| !! | ACGATTGAGCCATATTTTGA+GGG | - | chr5_1:58051115-58051134 | None:intergenic | 35.0% |
| ! | AACGATTGAGCCATATTTTG+AGG | - | chr5_1:58051116-58051135 | None:intergenic | 35.0% |
| !! | TTTTGGAGAAGTTAGAATGG+TGG | - | chr5_1:58051250-58051269 | None:intergenic | 35.0% |
| GAATATGAACCTAAGACCAA+GGG | + | chr5_1:58051417-58051436 | Msa0739690:intron | 35.0% | |
| AAGAACACTCTTAATACCGA+AGG | + | chr5_1:58051451-58051470 | Msa0739690:intron | 35.0% | |
| AGAACACTCTTAATACCGAA+GGG | + | chr5_1:58051452-58051471 | Msa0739690:intron | 35.0% | |
| ! | AAGCATCAACTGTGAGATTT+TGG | + | chr5_1:58051544-58051563 | Msa0739690:intron | 35.0% |
| !! | ATTTTGGTGTGAAGAATGAG+TGG | + | chr5_1:58051560-58051579 | Msa0739690:intron | 35.0% |
| !! | TTTTGGTGTGAAGAATGAGT+GGG | + | chr5_1:58051561-58051580 | Msa0739690:intron | 35.0% |
| CAAGTAACTCTGCCTATAAA+AGG | - | chr5_1:58051596-58051615 | None:intergenic | 35.0% | |
| ! | CTTTTATAGGCAGAGTTACT+TGG | + | chr5_1:58051594-58051613 | Msa0739690:intron | 35.0% |
| TTTATAGGCAGAGTTACTTG+GGG | + | chr5_1:58051596-58051615 | Msa0739690:intron | 35.0% | |
| ! | AGCAAACGCGTTTTCTTAAT+TGG | + | chr5_1:58051690-58051709 | Msa0739690:intron | 35.0% |
| !!! | AACCATTTTGAAGTCAAGTG+GGG | - | chr5_1:58052061-58052080 | None:intergenic | 35.0% |
| !!! | GAAACCATTTTGAAGTCAAG+TGG | - | chr5_1:58052063-58052082 | None:intergenic | 35.0% |
| !! | TATGCTAAGGTTCAAGTTGT+TGG | - | chr5_1:58052138-58052157 | None:intergenic | 35.0% |
| GAATATCTTCCACTATGCTA+AGG | - | chr5_1:58052151-58052170 | None:intergenic | 35.0% | |
| TCTATACTCTATGTTGAGTG+GGG | - | chr5_1:58052400-58052419 | None:intergenic | 35.0% | |
| GATCTATACTCTATGTTGAG+TGG | - | chr5_1:58052402-58052421 | None:intergenic | 35.0% | |
| GGTAAAAACAAGTCATGAAG+TGG | - | chr5_1:58052506-58052525 | None:intergenic | 35.0% | |
| ! | TACCCATTGAACCTATTTCT+TGG | + | chr5_1:58052522-58052541 | Msa0739690:intron | 35.0% |
| ! | ACCCATTGAACCTATTTCTT+GGG | + | chr5_1:58052523-58052542 | Msa0739690:intron | 35.0% |
| TCCCAAGAAATAGGTTCAAT+GGG | - | chr5_1:58052527-58052546 | None:intergenic | 35.0% | |
| ATCCCAAGAAATAGGTTCAA+TGG | - | chr5_1:58052528-58052547 | None:intergenic | 35.0% | |
| CTATTAAGTCCTTTCGTCAA+AGG | + | chr5_1:58052632-58052651 | Msa0739690:intron | 35.0% | |
| TTAGTTGATCCTTTGACGAA+AGG | - | chr5_1:58052644-58052663 | None:intergenic | 35.0% | |
| AATTCATTGTGATAGTACCG+CGG | - | chr5_1:58052796-58052815 | None:intergenic | 35.0% | |
| TCACAATGAATTAACACAGC+AGG | + | chr5_1:58052804-58052823 | Msa0739690:intron | 35.0% | |
| TGAATTAACACAGCAGGTAA+CGG | + | chr5_1:58052810-58052829 | Msa0739690:intron | 35.0% | |
| AAACTAGTGAAGAAGCAAGT+TGG | - | chr5_1:58052875-58052894 | None:intergenic | 35.0% | |
| ATCTCAGATTCATTCCATAG+TGG | + | chr5_1:58052909-58052928 | Msa0739690:intron | 35.0% | |
| !! | GACTCTAAGATTACTTCACT+AGG | - | chr5_1:58053066-58053085 | None:intergenic | 35.0% |
| TCATGACTCTTTCTATAGCA+TGG | + | chr5_1:58053095-58053114 | Msa0739690:intron | 35.0% | |
| TGTGCAAGTTTACTAGTAGA+CGG | - | chr5_1:58053134-58053153 | None:intergenic | 35.0% | |
| AAGTGTAAGAACACTTGAGA+TGG | - | chr5_1:58053249-58053268 | None:intergenic | 35.0% | |
| ATCTCAAGTGTTCTTACACT+TGG | + | chr5_1:58053248-58053267 | Msa0739690:intron | 35.0% | |
| ! | AATTTTTCATGCCATTCCTC+AGG | + | chr5_1:58053579-58053598 | Msa0739690:intron | 35.0% |
| ! | TGGTCTAAAATAAACTCCTG+AGG | - | chr5_1:58053598-58053617 | None:intergenic | 35.0% |
| !! | TAACTCGAAAGTACTCCAAA+TGG | - | chr5_1:58053738-58053757 | None:intergenic | 35.0% |
| !! | TACTTTCGAGTTATAAACGG+CGG | + | chr5_1:58053745-58053764 | Msa0739690:intron | 35.0% |
| ! | TCTCATGGATATGATTTTCG+TGG | + | chr5_1:58053784-58053803 | Msa0739690:intron | 35.0% |
| ! | GTCTAAAACCTTTGACTACA+AGG | + | chr5_1:58053847-58053866 | Msa0739690:intron | 35.0% |
| !! | TGGTATGGTTGATGAATACA+AGG | - | chr5_1:58053877-58053896 | None:intergenic | 35.0% |
| TATTCATCAACCATACCATC+AGG | + | chr5_1:58053879-58053898 | Msa0739690:intron | 35.0% | |
| AGAACTAAAACCTGATGGTA+TGG | - | chr5_1:58053892-58053911 | None:intergenic | 35.0% | |
| AAAATCCAAGTACAACCGAT+TGG | + | chr5_1:58053919-58053938 | Msa0739690:intron | 35.0% | |
| CTCATAGTTGCAAAACCAAT+CGG | - | chr5_1:58053937-58053956 | None:intergenic | 35.0% | |
| CAAGATGTTATAGAACCTCA+AGG | - | chr5_1:58054133-58054152 | None:intergenic | 35.0% | |
| CCCCACTATTCTTTAGTTAA+AGG | + | chr5_1:58054287-58054306 | Msa0739690:intron | 35.0% | |
| CCCCTTTAACTAAAGAATAG+TGG | - | chr5_1:58054292-58054311 | None:intergenic | 35.0% | |
| CCCGATGAATACATATTCAT+AGG | + | chr5_1:58054405-58054424 | Msa0739690:intron | 35.0% | |
| TCTGGACTATATTAAGATCC+TGG | - | chr5_1:58054461-58054480 | None:intergenic | 35.0% | |
| GGAAAAAGATTGCACTTTGA+TGG | - | chr5_1:58054938-58054957 | None:intergenic | 35.0% | |
| AGTTGTCCCTAGATACATTA+AGG | - | chr5_1:58055439-58055458 | None:intergenic | 35.0% | |
| ACCGAAGAAGTTACATATTG+AGG | - | chr5_1:58055465-58055484 | None:intergenic | 35.0% | |
| CTTCGGTAGATGATAGAATT+TGG | - | chr5_1:58050923-58050942 | None:intergenic | 35.0% | |
| ACTCAACCTAGTAACAACTT+CGG | - | chr5_1:58050940-58050959 | None:intergenic | 35.0% | |
| TTAATCGAACAGTTGTAGCT+GGG | - | chr5_1:58051057-58051076 | None:intergenic | 35.0% | |
| !! | ACGATTGAGCCATATTTTGA+GGG | - | chr5_1:58051115-58051134 | None:intergenic | 35.0% |
| ! | AACGATTGAGCCATATTTTG+AGG | - | chr5_1:58051116-58051135 | None:intergenic | 35.0% |
| !! | TTTTGGAGAAGTTAGAATGG+TGG | - | chr5_1:58051250-58051269 | None:intergenic | 35.0% |
| GAATATGAACCTAAGACCAA+GGG | + | chr5_1:58051417-58051436 | Msa0739690:intron | 35.0% | |
| AAGAACACTCTTAATACCGA+AGG | + | chr5_1:58051451-58051470 | Msa0739690:intron | 35.0% | |
| AGAACACTCTTAATACCGAA+GGG | + | chr5_1:58051452-58051471 | Msa0739690:intron | 35.0% | |
| ! | AAGCATCAACTGTGAGATTT+TGG | + | chr5_1:58051544-58051563 | Msa0739690:intron | 35.0% |
| !! | ATTTTGGTGTGAAGAATGAG+TGG | + | chr5_1:58051560-58051579 | Msa0739690:intron | 35.0% |
| !! | TTTTGGTGTGAAGAATGAGT+GGG | + | chr5_1:58051561-58051580 | Msa0739690:intron | 35.0% |
| CAAGTAACTCTGCCTATAAA+AGG | - | chr5_1:58051596-58051615 | None:intergenic | 35.0% | |
| ! | CTTTTATAGGCAGAGTTACT+TGG | + | chr5_1:58051594-58051613 | Msa0739690:intron | 35.0% |
| TTTATAGGCAGAGTTACTTG+GGG | + | chr5_1:58051596-58051615 | Msa0739690:intron | 35.0% | |
| ! | AGCAAACGCGTTTTCTTAAT+TGG | + | chr5_1:58051690-58051709 | Msa0739690:intron | 35.0% |
| ACTGGTGTATATGTTTCTTC+TGG | - | chr5_1:58056756-58056775 | None:intergenic | 35.0% | |
| CAAATTTGACCACTGATGTT+TGG | + | chr5_1:58056793-58056812 | Msa0739690:CDS | 35.0% | |
| ! | AGAGAGGTTTCTATGGATTA+TGG | + | chr5_1:58056900-58056919 | Msa0739690:CDS | 35.0% |
| TACATATCCTCTTAGAAGTG+AGG | + | chr5_1:58056932-58056951 | Msa0739690:CDS | 35.0% | |
| ! | AAAGTATCCTCACTTCTAAG+AGG | - | chr5_1:58056942-58056961 | None:intergenic | 35.0% |
| TCTTAGAAGTGAGGATACTT+TGG | + | chr5_1:58056941-58056960 | Msa0739690:CDS | 35.0% | |
| !! | TACTTTGGAGTCTATTGCAA+AGG | + | chr5_1:58056956-58056975 | Msa0739690:CDS | 35.0% |
| TGCAAAGGATACTAAGATTG+AGG | + | chr5_1:58056971-58056990 | Msa0739690:CDS | 35.0% | |
| TAAAAACAAGACCACTTCCT+TGG | - | chr5_1:58057037-58057056 | None:intergenic | 35.0% | |
| CAAAAATCAAACCTTTCCCT+GGG | - | chr5_1:58057061-58057080 | None:intergenic | 35.0% | |
| TCAAAAATCAAACCTTTCCC+TGG | - | chr5_1:58057062-58057081 | None:intergenic | 35.0% | |
| CATCTACCGAAGTTGTTACT+AGG | + | chr5_1:58050931-58050950 | Msa0739690:intron | 40.0% | |
| AGTCTACCTTGCACAACTTT+GGG | - | chr5_1:58051003-58051022 | None:intergenic | 40.0% | |
| TAGTCTACCTTGCACAACTT+TGG | - | chr5_1:58051004-58051023 | None:intergenic | 40.0% | |
| GTTAATCGAACAGTTGTAGC+TGG | - | chr5_1:58051058-58051077 | None:intergenic | 40.0% | |
| TTGAACGGTTTCGAATAGAG+CGG | - | chr5_1:58051168-58051187 | None:intergenic | 40.0% | |
| GTCTCAGCACCATAATAGAA+TGG | - | chr5_1:58051209-58051228 | None:intergenic | 40.0% | |
| GTGGTAACACCATATTTGAG+TGG | - | chr5_1:58051231-58051250 | None:intergenic | 40.0% | |
| ACACTACGACCACTCAAATA+TGG | + | chr5_1:58051280-58051299 | Msa0739690:intron | 40.0% | |
| GTGGTATCACCATATTTGAG+TGG | - | chr5_1:58051292-58051311 | None:intergenic | 40.0% | |
| GGAATATGAACCTAAGACCA+AGG | + | chr5_1:58051416-58051435 | Msa0739690:intron | 40.0% | |
| TTCTTAAGACCATAGTCCCT+TGG | - | chr5_1:58051436-58051455 | None:intergenic | 40.0% | |
| TTAATACCGAAGGGACAGAA+AGG | + | chr5_1:58051461-58051480 | Msa0739690:intron | 40.0% | |
| ! | TTTGGTGTGAAGAATGAGTG+GGG | + | chr5_1:58051562-58051581 | Msa0739690:intron | 40.0% |
| TAAGAAAACGCGTTTGCTTG+AGG | - | chr5_1:58051688-58051707 | None:intergenic | 40.0% | |
| GTTCACCCGTTCACAAAATT+GGG | + | chr5_1:58051867-58051886 | Msa0739690:intron | 40.0% | |
| ATGGGAAAAGTGACCTCTAA+GGG | - | chr5_1:58051908-58051927 | None:intergenic | 40.0% | |
| TATGGGAAAAGTGACCTCTA+AGG | - | chr5_1:58051909-58051928 | None:intergenic | 40.0% | |
| !!! | ACCATTTTGAAGTCAAGTGG+GGG | - | chr5_1:58052060-58052079 | None:intergenic | 40.0% |
| CAACTTGAACCTTAGCATAG+TGG | + | chr5_1:58052139-58052158 | Msa0739690:intron | 40.0% | |
| CCTATGAAAAGGTTTGTGTG+TGG | - | chr5_1:58052225-58052244 | None:intergenic | 40.0% | |
| ! | CCACACACAAACCTTTTCAT+AGG | + | chr5_1:58052222-58052241 | Msa0739690:intron | 40.0% |
| ! | CTAGAGCATTCGTTAAAACC+GGG | - | chr5_1:58052291-58052310 | None:intergenic | 40.0% |
| ! | CCTAGAGCATTCGTTAAAAC+CGG | - | chr5_1:58052292-58052311 | None:intergenic | 40.0% |
| ATTCTGCCTCGAAATTCCAT+AGG | + | chr5_1:58052313-58052332 | Msa0739690:intron | 40.0% | |
| CCTATACGAATGTGGAACTT+AGG | - | chr5_1:58052344-58052363 | None:intergenic | 40.0% | |
| CCTAAGTTCCACATTCGTAT+AGG | + | chr5_1:58052341-58052360 | Msa0739690:intron | 40.0% | |
| TAGACTCACCTATACGAATG+TGG | - | chr5_1:58052352-58052371 | None:intergenic | 40.0% | |
| TCGTATAGGTGAGTCTATCA+AGG | + | chr5_1:58052355-58052374 | Msa0739690:intron | 40.0% | |
| CGTATAGGTGAGTCTATCAA+GGG | + | chr5_1:58052356-58052375 | Msa0739690:intron | 40.0% | |
| CAAGAAACATCCAGTAGGAT+GGG | - | chr5_1:58052602-58052621 | None:intergenic | 40.0% | |
| AAGTCCAAGAAACATCCAGT+AGG | - | chr5_1:58052607-58052626 | None:intergenic | 40.0% | |
| GAGTGTATCTCTAAATGGAG+CGG | - | chr5_1:58052699-58052718 | None:intergenic | 40.0% | |
| ATGGTAAGAGACGACAGATA+AGG | - | chr5_1:58052743-58052762 | None:intergenic | 40.0% | |
| CTTAATCTTTGCAATAGCCG+CGG | + | chr5_1:58052776-58052795 | Msa0739690:intron | 40.0% | |
| ! | GTAACGGTTTTTCCCATAGA+GGG | + | chr5_1:58052826-58052845 | Msa0739690:intron | 40.0% |
| !! | GATATTGACTCAGTCCACTA+TGG | - | chr5_1:58052926-58052945 | None:intergenic | 40.0% |
| CAAGTTTACTAGTAGACGGA+TGG | - | chr5_1:58053130-58053149 | None:intergenic | 40.0% | |
| TTTCACGACATCGACAATGT+CGG | + | chr5_1:58053158-58053177 | Msa0739690:intron | 40.0% | |
| GTCGGATCTAATACATTCAG+TGG | + | chr5_1:58053176-58053195 | Msa0739690:intron | 40.0% | |
| AGGCAACTTTCACATCCATT+TGG | + | chr5_1:58053720-58053739 | Msa0739690:intron | 40.0% | |
| AGTTATAAACGGCGGCTAAA+GGG | + | chr5_1:58053753-58053772 | Msa0739690:intron | 40.0% | |
| ! | TAAAGGGACTAGTACTCTCA+TGG | + | chr5_1:58053769-58053788 | Msa0739690:intron | 40.0% |
| ! | ATGGATATGATTTTCGTGGC+TGG | + | chr5_1:58053788-58053807 | Msa0739690:intron | 40.0% |
| AAGGCTTTCCTTGTAGTCAA+AGG | - | chr5_1:58053858-58053877 | None:intergenic | 40.0% | |
| CAAAACCAATCGGTTGTACT+TGG | - | chr5_1:58053927-58053946 | None:intergenic | 40.0% | |
| CCTCATTGGATGCTGAATTA+TGG | - | chr5_1:58054026-58054045 | None:intergenic | 40.0% | |
| CCATAATTCAGCATCCAATG+AGG | + | chr5_1:58054023-58054042 | Msa0739690:intron | 40.0% | |
| ! | TTAGCTTTCTTACCTCCTTG+AGG | + | chr5_1:58054115-58054134 | Msa0739690:intron | 40.0% |
| GATGTTATAGAACCTCAAGG+AGG | - | chr5_1:58054130-58054149 | None:intergenic | 40.0% | |
| ACTAGTGAGTTCAACTCTCT+TGG | + | chr5_1:58054432-58054451 | Msa0739690:intron | 40.0% | |
| CTAGTGAGTTCAACTCTCTT+GGG | + | chr5_1:58054433-58054452 | Msa0739690:intron | 40.0% | |
| TAGTGAGTTCAACTCTCTTG+GGG | + | chr5_1:58054434-58054453 | Msa0739690:intron | 40.0% | |
| ! | TTTTCGAACTTGGGATTGTC+TGG | - | chr5_1:58054479-58054498 | None:intergenic | 40.0% |
| !! | TCTTTTTCCACAAGAGTGCA+TGG | + | chr5_1:58054949-58054968 | Msa0739690:intron | 40.0% |
| CATCTACCGAAGTTGTTACT+AGG | + | chr5_1:58050931-58050950 | Msa0739690:intron | 40.0% | |
| AGTCTACCTTGCACAACTTT+GGG | - | chr5_1:58051003-58051022 | None:intergenic | 40.0% | |
| TAGTCTACCTTGCACAACTT+TGG | - | chr5_1:58051004-58051023 | None:intergenic | 40.0% | |
| GTTAATCGAACAGTTGTAGC+TGG | - | chr5_1:58051058-58051077 | None:intergenic | 40.0% | |
| TTGAACGGTTTCGAATAGAG+CGG | - | chr5_1:58051168-58051187 | None:intergenic | 40.0% | |
| GTCTCAGCACCATAATAGAA+TGG | - | chr5_1:58051209-58051228 | None:intergenic | 40.0% | |
| GTGGTAACACCATATTTGAG+TGG | - | chr5_1:58051231-58051250 | None:intergenic | 40.0% | |
| ACACTACGACCACTCAAATA+TGG | + | chr5_1:58051280-58051299 | Msa0739690:intron | 40.0% | |
| GTGGTATCACCATATTTGAG+TGG | - | chr5_1:58051292-58051311 | None:intergenic | 40.0% | |
| GGAATATGAACCTAAGACCA+AGG | + | chr5_1:58051416-58051435 | Msa0739690:intron | 40.0% | |
| TTCTTAAGACCATAGTCCCT+TGG | - | chr5_1:58051436-58051455 | None:intergenic | 40.0% | |
| TTAATACCGAAGGGACAGAA+AGG | + | chr5_1:58051461-58051480 | Msa0739690:intron | 40.0% | |
| ! | TTTGGTGTGAAGAATGAGTG+GGG | + | chr5_1:58051562-58051581 | Msa0739690:intron | 40.0% |
| TAAGAAAACGCGTTTGCTTG+AGG | - | chr5_1:58051688-58051707 | None:intergenic | 40.0% | |
| GTTCACCCGTTCACAAAATT+GGG | + | chr5_1:58051867-58051886 | Msa0739690:intron | 40.0% | |
| ATGGGAAAAGTGACCTCTAA+GGG | - | chr5_1:58051908-58051927 | None:intergenic | 40.0% | |
| TATGGGAAAAGTGACCTCTA+AGG | - | chr5_1:58051909-58051928 | None:intergenic | 40.0% | |
| TTTCCCTTGTGATTGCATCA+AGG | + | chr5_1:58056692-58056711 | Msa0739690:intron | 40.0% | |
| TTCCCTTGTGATTGCATCAA+GGG | + | chr5_1:58056693-58056712 | Msa0739690:intron | 40.0% | |
| GAAAAACTCTCTTCAGCAAC+TGG | - | chr5_1:58056774-58056793 | None:intergenic | 40.0% | |
| ! | GTTTTGCATCCAAACATCAG+TGG | - | chr5_1:58056805-58056824 | None:intergenic | 40.0% |
| TTGTTCTTGTGGGAATAGAG+AGG | + | chr5_1:58056884-58056903 | Msa0739690:CDS | 40.0% | |
| TGGGAATAGAGAGGTTTCTA+TGG | + | chr5_1:58056893-58056912 | Msa0739690:CDS | 40.0% | |
| !!! | AGTGGTCTTGTTTTTATCCC+AGG | + | chr5_1:58057041-58057060 | Msa0739690:CDS | 40.0% |
| !!! | GTGGTCTTGTTTTTATCCCA+GGG | + | chr5_1:58057042-58057061 | Msa0739690:CDS | 40.0% |
| !!! | CTTGTTTTTATCCCAGGGAA+AGG | + | chr5_1:58057047-58057066 | Msa0739690:CDS | 40.0% |
| !! | GCTCTCTTTAAGACGTTTCG+TGG | + | chr5_1:58050972-58050991 | Msa0739690:intron | 45.0% |
| !!! | TAGCTGGGCTTGTTTTATCC+TGG | - | chr5_1:58051042-58051061 | None:intergenic | 45.0% |
| TTGATCGAAGCCACTCGATA+CGG | + | chr5_1:58051135-58051154 | Msa0739690:intron | 45.0% | |
| GTGCTGAGACCACTCAAATA+TGG | + | chr5_1:58051219-58051238 | Msa0739690:intron | 45.0% | |
| AACCTAAGACCAAGGGACTA+TGG | + | chr5_1:58051424-58051443 | Msa0739690:intron | 45.0% | |
| TCTACTCCTTTCTGTCCCTT+CGG | - | chr5_1:58051470-58051489 | None:intergenic | 45.0% | |
| GCGTAAAACGCGTTTGCTTA+AGG | - | chr5_1:58051638-58051657 | None:intergenic | 45.0% | |
| TGGAAATATCCGGAAGCTTC+TGG | + | chr5_1:58051710-58051729 | Msa0739690:intron | 45.0% | |
| TATCCGGAAGCTTCTGGATA+CGG | + | chr5_1:58051716-58051735 | Msa0739690:intron | 45.0% | |
| TTCTGGATACGGGTTTGGAT+CGG | + | chr5_1:58051727-58051746 | Msa0739690:intron | 45.0% | |
| CGTTCACCCGTTCACAAAAT+TGG | + | chr5_1:58051866-58051885 | Msa0739690:intron | 45.0% | |
| ! | GGGTACCCAATTTTGTGAAC+GGG | - | chr5_1:58051875-58051894 | None:intergenic | 45.0% |
| !! | GGGGTACCCAATTTTGTGAA+CGG | - | chr5_1:58051876-58051895 | None:intergenic | 45.0% |
| TCACAAAATTGGGTACCCCA+AGG | + | chr5_1:58051877-58051896 | Msa0739690:intron | 45.0% | |
| CACAAAATTGGGTACCCCAA+GGG | + | chr5_1:58051878-58051897 | Msa0739690:intron | 45.0% | |
| TCCCCCACTTGACTTCAAAA+TGG | + | chr5_1:58052056-58052075 | Msa0739690:intron | 45.0% | |
| ! | CTAAAAGCCCGTGCGTTTTA+AGG | + | chr5_1:58052251-58052270 | Msa0739690:intron | 45.0% |
| !! | CCGGTTTTAACGAATGCTCT+AGG | + | chr5_1:58052289-58052308 | Msa0739690:intron | 45.0% |
| TACGAATGTGGAACTTAGGC+CGG | - | chr5_1:58052340-58052359 | None:intergenic | 45.0% | |
| GACTGGAGATCCCAAGAAAT+AGG | - | chr5_1:58052536-58052555 | None:intergenic | 45.0% | |
| ! | TACCATCACTTGTGGGCTAT+AGG | + | chr5_1:58052569-58052588 | Msa0739690:intron | 45.0% |
| CCAAGAAACATCCAGTAGGA+TGG | - | chr5_1:58052603-58052622 | None:intergenic | 45.0% | |
| CCATCCTACTGGATGTTTCT+TGG | + | chr5_1:58052600-58052619 | Msa0739690:intron | 45.0% | |
| !! | GGTAACGGTTTTTCCCATAG+AGG | + | chr5_1:58052825-58052844 | Msa0739690:intron | 45.0% |
| TGCACATTGAGCATCACTAG+AGG | - | chr5_1:58052969-58052988 | None:intergenic | 45.0% | |
| GAGTTATAAACGGCGGCTAA+AGG | + | chr5_1:58053752-58053771 | Msa0739690:intron | 45.0% | |
| ! | AATGGGAGCACGACATTAGT+GGG | - | chr5_1:58054250-58054269 | None:intergenic | 45.0% |
| ! | TAATGGGAGCACGACATTAG+TGG | - | chr5_1:58054251-58054270 | None:intergenic | 45.0% |
| TTGTGTACCATGCACTCTTG+TGG | - | chr5_1:58054959-58054978 | None:intergenic | 45.0% | |
| !! | GCTCTCTTTAAGACGTTTCG+TGG | + | chr5_1:58050972-58050991 | Msa0739690:intron | 45.0% |
| !!! | TAGCTGGGCTTGTTTTATCC+TGG | - | chr5_1:58051042-58051061 | None:intergenic | 45.0% |
| TTGATCGAAGCCACTCGATA+CGG | + | chr5_1:58051135-58051154 | Msa0739690:intron | 45.0% | |
| GTGCTGAGACCACTCAAATA+TGG | + | chr5_1:58051219-58051238 | Msa0739690:intron | 45.0% | |
| AACCTAAGACCAAGGGACTA+TGG | + | chr5_1:58051424-58051443 | Msa0739690:intron | 45.0% | |
| TCTACTCCTTTCTGTCCCTT+CGG | - | chr5_1:58051470-58051489 | None:intergenic | 45.0% | |
| GCGTAAAACGCGTTTGCTTA+AGG | - | chr5_1:58051638-58051657 | None:intergenic | 45.0% | |
| TGGAAATATCCGGAAGCTTC+TGG | + | chr5_1:58051710-58051729 | Msa0739690:intron | 45.0% | |
| TATCCGGAAGCTTCTGGATA+CGG | + | chr5_1:58051716-58051735 | Msa0739690:intron | 45.0% | |
| TTCTGGATACGGGTTTGGAT+CGG | + | chr5_1:58051727-58051746 | Msa0739690:intron | 45.0% | |
| CGTTCACCCGTTCACAAAAT+TGG | + | chr5_1:58051866-58051885 | Msa0739690:intron | 45.0% | |
| ! | GGGTACCCAATTTTGTGAAC+GGG | - | chr5_1:58051875-58051894 | None:intergenic | 45.0% |
| !! | GGGGTACCCAATTTTGTGAA+CGG | - | chr5_1:58051876-58051895 | None:intergenic | 45.0% |
| TCACAAAATTGGGTACCCCA+AGG | + | chr5_1:58051877-58051896 | Msa0739690:intron | 45.0% | |
| CACAAAATTGGGTACCCCAA+GGG | + | chr5_1:58051878-58051897 | Msa0739690:intron | 45.0% | |
| ! | GCAATCACAAGGGAAAGTGT+TGG | - | chr5_1:58056688-58056707 | None:intergenic | 45.0% |
| CTCCCTTGATGCAATCACAA+GGG | - | chr5_1:58056698-58056717 | None:intergenic | 45.0% | |
| TCTCCCTTGATGCAATCACA+AGG | - | chr5_1:58056699-58056718 | None:intergenic | 45.0% | |
| ! | TTGTTGCAGAGGTATAACCC+TGG | + | chr5_1:58056999-58057018 | Msa0739690:CDS | 45.0% |
| CTTGGCTGAAATCAACACCA+GGG | - | chr5_1:58057019-58057038 | None:intergenic | 45.0% | |
| ! | GTTGATTTCAGCCAAGGAAG+TGG | + | chr5_1:58057023-58057042 | Msa0739690:CDS | 45.0% |
| ! | TACTAGGTTGAGTCACGACC+AGG | + | chr5_1:58050947-58050966 | Msa0739690:intron | 50.0% |
| ACGTCTTAAAGAGAGCGACC+TGG | - | chr5_1:58050968-58050987 | None:intergenic | 50.0% | |
| GCACTACCCAAAGTTGTGCA+AGG | + | chr5_1:58050994-58051013 | Msa0739690:intron | 50.0% | |
| !!! | GGCTTGTTTTATCCTGGAGG+CGG | - | chr5_1:58051036-58051055 | None:intergenic | 50.0% |
| !!! | CTGGGCTTGTTTTATCCTGG+AGG | - | chr5_1:58051039-58051058 | None:intergenic | 50.0% |
| ! | GACCATAGTCCCTTGGTCTT+AGG | - | chr5_1:58051429-58051448 | None:intergenic | 50.0% |
| GAGAAGAGAGAAAACCGCAC+AGG | + | chr5_1:58051521-58051540 | Msa0739690:intron | 50.0% | |
| ! | CACAGTTGATGCTTCCTGTG+CGG | - | chr5_1:58051538-58051557 | None:intergenic | 50.0% |
| ! | GGGGCGAGCTTTCCTTTTAT+AGG | + | chr5_1:58051581-58051600 | Msa0739690:intron | 50.0% |
| ! | AACGCGTTTTACGCGTGACT+TGG | + | chr5_1:58051644-58051663 | Msa0739690:intron | 50.0% |
| ! | ACGCGTTTTACGCGTGACTT+GGG | + | chr5_1:58051645-58051664 | Msa0739690:intron | 50.0% |
| ATCCGGAAGCTTCTGGATAC+GGG | + | chr5_1:58051717-58051736 | Msa0739690:intron | 50.0% | |
| AACCCGTATCCAGAAGCTTC+CGG | - | chr5_1:58051722-58051741 | None:intergenic | 50.0% | |
| GAAGCTTCTGGATACGGGTT+TGG | + | chr5_1:58051722-58051741 | Msa0739690:intron | 50.0% | |
| TCTGGATACGGGTTTGGATC+GGG | + | chr5_1:58051728-58051747 | Msa0739690:intron | 50.0% | |
| TTGGGGTGACCCTTCAATGT+GGG | + | chr5_1:58051945-58051964 | Msa0739690:intron | 50.0% | |
| GAAGTCAAGTGGGGGATTGT+TGG | - | chr5_1:58052052-58052071 | None:intergenic | 50.0% | |
| TAAAACCGGGATACACGTGC+CGG | - | chr5_1:58052278-58052297 | None:intergenic | 50.0% | |
| GCCTCGAAATTCCATAGGAC+CGG | + | chr5_1:58052318-58052337 | Msa0739690:intron | 50.0% | |
| CATGATCCTGCAGCGAAAGA+AGG | - | chr5_1:58052450-58052469 | None:intergenic | 50.0% | |
| CTTGGGATCTCCAGTCATGT+AGG | + | chr5_1:58052540-58052559 | Msa0739690:intron | 50.0% | |
| GGATCTCCAGTCATGTAGGT+CGG | + | chr5_1:58052544-58052563 | Msa0739690:intron | 50.0% | |
| GATCTCCAGTCATGTAGGTC+GGG | + | chr5_1:58052545-58052564 | Msa0739690:intron | 50.0% | |
| GTCGGGTTACCATCACTTGT+GGG | + | chr5_1:58052562-58052581 | Msa0739690:intron | 50.0% | |
| TGCCTATAGCCCACAAGTGA+TGG | - | chr5_1:58052574-58052593 | None:intergenic | 50.0% | |
| AGGCATTAGTCCCATCCTAC+TGG | + | chr5_1:58052589-58052608 | Msa0739690:intron | 50.0% | |
| GCTAGCTGAGATCCCTCTAT+GGG | - | chr5_1:58052841-58052860 | None:intergenic | 50.0% | |
| TGCTAGCTGAGATCCCTCTA+TGG | - | chr5_1:58052842-58052861 | None:intergenic | 50.0% | |
| TAGAGGGATCTCAGCTAGCA+AGG | + | chr5_1:58052842-58052861 | Msa0739690:intron | 50.0% | |
| ! | ATGGGAGCACGACATTAGTG+GGG | - | chr5_1:58054249-58054268 | None:intergenic | 50.0% |
| !! | AGAATAGTGGGGGCACTAGT+GGG | - | chr5_1:58054279-58054298 | None:intergenic | 50.0% |
| !! | AAGAATAGTGGGGGCACTAG+TGG | - | chr5_1:58054280-58054299 | None:intergenic | 50.0% |
| ! | TACTAGGTTGAGTCACGACC+AGG | + | chr5_1:58050947-58050966 | Msa0739690:intron | 50.0% |
| ACGTCTTAAAGAGAGCGACC+TGG | - | chr5_1:58050968-58050987 | None:intergenic | 50.0% | |
| GCACTACCCAAAGTTGTGCA+AGG | + | chr5_1:58050994-58051013 | Msa0739690:intron | 50.0% | |
| !!! | GGCTTGTTTTATCCTGGAGG+CGG | - | chr5_1:58051036-58051055 | None:intergenic | 50.0% |
| !!! | CTGGGCTTGTTTTATCCTGG+AGG | - | chr5_1:58051039-58051058 | None:intergenic | 50.0% |
| ! | GACCATAGTCCCTTGGTCTT+AGG | - | chr5_1:58051429-58051448 | None:intergenic | 50.0% |
| GAGAAGAGAGAAAACCGCAC+AGG | + | chr5_1:58051521-58051540 | Msa0739690:intron | 50.0% | |
| ! | CACAGTTGATGCTTCCTGTG+CGG | - | chr5_1:58051538-58051557 | None:intergenic | 50.0% |
| ! | GGGGCGAGCTTTCCTTTTAT+AGG | + | chr5_1:58051581-58051600 | Msa0739690:intron | 50.0% |
| ! | AACGCGTTTTACGCGTGACT+TGG | + | chr5_1:58051644-58051663 | Msa0739690:intron | 50.0% |
| ! | ACGCGTTTTACGCGTGACTT+GGG | + | chr5_1:58051645-58051664 | Msa0739690:intron | 50.0% |
| ATCCGGAAGCTTCTGGATAC+GGG | + | chr5_1:58051717-58051736 | Msa0739690:intron | 50.0% | |
| AACCCGTATCCAGAAGCTTC+CGG | - | chr5_1:58051722-58051741 | None:intergenic | 50.0% | |
| GAAGCTTCTGGATACGGGTT+TGG | + | chr5_1:58051722-58051741 | Msa0739690:intron | 50.0% | |
| TCTGGATACGGGTTTGGATC+GGG | + | chr5_1:58051728-58051747 | Msa0739690:intron | 50.0% | |
| TTGGGGTGACCCTTCAATGT+GGG | + | chr5_1:58051945-58051964 | Msa0739690:intron | 50.0% | |
| TTGAGGCTGAGTTGTTGCAG+AGG | + | chr5_1:58056988-58057007 | Msa0739690:CDS | 50.0% | |
| CCTTGGCTGAAATCAACACC+AGG | - | chr5_1:58057020-58057039 | None:intergenic | 50.0% | |
| !! | CCTGGTGTTGATTTCAGCCA+AGG | + | chr5_1:58057017-58057036 | Msa0739690:CDS | 50.0% |
| CGGTTACGTACCGTATCGAG+TGG | - | chr5_1:58051148-58051167 | None:intergenic | 55.0% | |
| ! | CGCGTTTTACGCGTGACTTG+GGG | + | chr5_1:58051646-58051665 | Msa0739690:intron | 55.0% |
| GATACGGGTTTGGATCGGGT+CGG | + | chr5_1:58051732-58051751 | Msa0739690:intron | 55.0% | |
| ! | ACCTCTAAGGGTGTGCCCTT+GGG | - | chr5_1:58051896-58051915 | None:intergenic | 55.0% |
| GTTGGGGTGACCCTTCAATG+TGG | + | chr5_1:58051944-58051963 | Msa0739690:intron | 55.0% | |
| AAAACCGGGATACACGTGCC+GGG | - | chr5_1:58052277-58052296 | None:intergenic | 55.0% | |
| GCCGGTCCTATGGAATTTCG+AGG | - | chr5_1:58052322-58052341 | None:intergenic | 55.0% | |
| TGGAACTTAGGCCGGTCCTA+TGG | - | chr5_1:58052332-58052351 | None:intergenic | 55.0% | |
| TGAGTGGGGTACACAGCTAC+AGG | - | chr5_1:58052386-58052405 | None:intergenic | 55.0% | |
| CCTGCAGCGAAAGAAGGATG+AGG | - | chr5_1:58052444-58052463 | None:intergenic | 55.0% | |
| CCTCATCCTTCTTTCGCTGC+AGG | + | chr5_1:58052441-58052460 | Msa0739690:intron | 55.0% | |
| GGTAACCCGACCTACATGAC+TGG | - | chr5_1:58052553-58052572 | None:intergenic | 55.0% | |
| GGTCGGGTTACCATCACTTG+TGG | + | chr5_1:58052561-58052580 | Msa0739690:intron | 55.0% | |
| ! | TGGGAGCACGACATTAGTGG+GGG | - | chr5_1:58054248-58054267 | None:intergenic | 55.0% |
| ! | GCACTAGTGGGGGCTCTAAT+GGG | - | chr5_1:58054267-58054286 | None:intergenic | 55.0% |
| !! | AATAGTGGGGGCACTAGTGG+GGG | - | chr5_1:58054277-58054296 | None:intergenic | 55.0% |
| !! | GAATAGTGGGGGCACTAGTG+GGG | - | chr5_1:58054278-58054297 | None:intergenic | 55.0% |
| GTTCAACTCTCTTGGGGTCC+AGG | + | chr5_1:58054440-58054459 | Msa0739690:intron | 55.0% | |
| CGGTTACGTACCGTATCGAG+TGG | - | chr5_1:58051148-58051167 | None:intergenic | 55.0% | |
| ! | CGCGTTTTACGCGTGACTTG+GGG | + | chr5_1:58051646-58051665 | Msa0739690:intron | 55.0% |
| GATACGGGTTTGGATCGGGT+CGG | + | chr5_1:58051732-58051751 | Msa0739690:intron | 55.0% | |
| ! | ACCTCTAAGGGTGTGCCCTT+GGG | - | chr5_1:58051896-58051915 | None:intergenic | 55.0% |
| GTTGGGGTGACCCTTCAATG+TGG | + | chr5_1:58051944-58051963 | Msa0739690:intron | 55.0% | |
| ! | GTTTTATCCTGGAGGCGGCG+TGG | - | chr5_1:58051031-58051050 | None:intergenic | 60.0% |
| ! | CCTCTAAGGGTGTGCCCTTG+GGG | - | chr5_1:58051895-58051914 | None:intergenic | 60.0% |
| ! | GACCTCTAAGGGTGTGCCCT+TGG | - | chr5_1:58051897-58051916 | None:intergenic | 60.0% |
| !!! | AGCCCGTGCGTTTTAAGGCC+CGG | + | chr5_1:58052256-58052275 | Msa0739690:intron | 60.0% |
| TGCCGGGCCTTAAAACGCAC+GGG | - | chr5_1:58052261-58052280 | None:intergenic | 60.0% | |
| GTGCCGGGCCTTAAAACGCA+CGG | - | chr5_1:58052262-58052281 | None:intergenic | 60.0% | |
| ! | GGCACTAGTGGGGGCTCTAA+TGG | - | chr5_1:58054268-58054287 | None:intergenic | 60.0% |
| ! | GTTTTATCCTGGAGGCGGCG+TGG | - | chr5_1:58051031-58051050 | None:intergenic | 60.0% |
| ! | CCTCTAAGGGTGTGCCCTTG+GGG | - | chr5_1:58051895-58051914 | None:intergenic | 60.0% |
| ! | GACCTCTAAGGGTGTGCCCT+TGG | - | chr5_1:58051897-58051916 | None:intergenic | 60.0% |
| CTATCAACCACGCCGCCTCC+AGG | + | chr5_1:58051021-58051040 | Msa0739690:intron | 65.0% | |
| ! | CCCCAAGGGCACACCCTTAG+AGG | + | chr5_1:58051892-58051911 | Msa0739690:intron | 65.0% |
| AAGGCCCGGCACGTGTATCC+CGG | + | chr5_1:58052270-58052289 | Msa0739690:intron | 65.0% | |
| CTATCAACCACGCCGCCTCC+AGG | + | chr5_1:58051021-58051040 | Msa0739690:intron | 65.0% | |
| ! | CCCCAAGGGCACACCCTTAG+AGG | + | chr5_1:58051892-58051911 | Msa0739690:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 58050533 | 58057100 | 58050533 | ID=Msa0739690;Name=Msa0739690 |
| chr5_1 | mRNA | 58050533 | 58057100 | 58050533 | ID=Msa0739690-mRNA-1;Parent=Msa0739690;Name=Msa0739690-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|0|0|2|0|196 |
| chr5_1 | exon | 58050533 | 58050775 | 58050533 | ID=Msa0739690-mRNA-1:exon:16565;Parent=Msa0739690-mRNA-1 |
| chr5_1 | exon | 58056753 | 58057100 | 58056753 | ID=Msa0739690-mRNA-1:exon:16566;Parent=Msa0739690-mRNA-1 |
| chr5_1 | CDS | 58050533 | 58050775 | 58050533 | ID=Msa0739690-mRNA-1:cds;Parent=Msa0739690-mRNA-1 |
| chr5_1 | CDS | 58056753 | 58057100 | 58056753 | ID=Msa0739690-mRNA-1:cds;Parent=Msa0739690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
