AlfalfaGEDB | Msa0739690

M. sativa cultivar zhongmu-4 / Msa0739690

KEGG: K13429
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739690	AES99907.2	63.248	234	38	4	1	186	1	234	8.05e-86	273

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739690	sp\|A8R7E6\|CERK1_ARATH	52.252	111	52	1	76	186	104	213	5.07e-32	124

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739690	G7K7M3	63.248	234	38	4	1	186	1	234	3.84e-86	273

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0187030	Msa0739690	0.813990	1.934479e-51	-8.615850e-47
Msa0579660	Msa0739690	0.803486	3.406442e-49	-8.615850e-47
Msa0739690	Msa0751260	0.807473	4.967843e-50	-8.615850e-47
Msa0739690	Msa0758230	0.802358	5.826708e-49	-8.615850e-47
Msa0739690	Msa0795070	0.805477	1.309988e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739690	MtrunA17_Chr5g0439571	63.248	234	38	4	1	186	1	234	5.69e-89	273
Msa0739690	MtrunA17_Chr5g0439601	71.845	103	29	0	84	186	109	211	1.08e-46	162
Msa0739690	MtrunA17_Chr5g0439621	67.961	103	33	0	84	186	135	237	5.86e-44	155
Msa0739690	MtrunA17_Chr5g0439561	67.308	104	34	0	83	186	126	229	8.88e-44	154
Msa0739690	MtrunA17_Chr5g0439801	67.290	107	29	1	81	187	104	204	9.88e-44	153
Msa0739690	MtrunA17_Chr3g0119241	55.340	103	45	1	84	186	114	215	8.01e-35	129
Msa0739690	MtrunA17_Chr5g0439701	53.398	103	48	0	84	186	111	213	1.49e-32	122
Msa0739690	MtrunA17_Chr5g0439631	49.533	107	54	0	80	186	106	212	9.09e-29	112
Msa0739690	MtrunA17_Chr2g0289131	52.427	103	48	1	84	186	103	204	5.68e-28	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739690	AT3G21630.1	52.252	111	52	1	76	186	104	213	5.15e-33	124

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Find 24 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTATCCTCACTTCTAAG+AGG	0.542669	5_1:-58056939	None:intergenic
AAGGTTGGAAACATTGGTTA+AGG	0.496788	5_1:-58050765	None:intergenic
ACAGAATCAAAGTGTAACAA+AGG	0.599649	5_1:+58050716	Msa0739690:CDS
ACATTAATCATTGCAAAATC+AGG	0.434442	5_1:-58056852	None:intergenic
ACTGGTGTATATGTTTCTTC+TGG	0.357855	5_1:-58056753	None:intergenic
AGAGAGGTTTCTATGGATTA+TGG	0.271365	5_1:+58056900	Msa0739690:CDS
ATTGAGTTGAATATAACAAG+TGG	0.582429	5_1:-58050626	None:intergenic
CAAATTTGACCACTGATGTT+TGG	0.361180	5_1:+58056793	Msa0739690:CDS
CCTGGTGTTGATTTCAGCCA+AGG	0.556316	5_1:+58057017	Msa0739690:CDS
CCTTGGCTGAAATCAACACC+AGG	0.520483	5_1:-58057017	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTGTTATGACTATGAATGA+TGG	-	chr5_1:58050701-58050720	None:intergenic	30.0%
ACAGAATCAAAGTGTAACAA+AGG	+	chr5_1:58050716-58050735	Msa0739690:CDS	30.0%
ATATGTAAGGTTGGAAACAT+TGG	-	chr5_1:58050774-58050793	None:intergenic	30.0%
TTGAGGATTTGTAAGAACAT+TGG	-	chr5_1:58050816-58050835	None:intergenic	30.0%
GAAATCCAAAAACAACAGAA+AGG	-	chr5_1:58050879-58050898	None:intergenic	30.0%
AGAATTACACCCTCAAAATA+TGG	+	chr5_1:58051103-58051122	Msa0739690:intron	30.0%
CGAAACCGTTCAAATTAATA+TGG	+	chr5_1:58051175-58051194	Msa0739690:intron	30.0%
TAAAAATGTCCCACATTGAA+GGG	-	chr5_1:58051957-58051976	None:intergenic	30.0%
TTAAAAATGTCCCACATTGA+AGG	-	chr5_1:58051958-58051977	None:intergenic	30.0%
CTATGAAAAAACTAGTGTGT+GGG	-	chr5_1:58051987-58052006	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	58050533	58057100	58050533	ID=Msa0739690;Name=Msa0739690
chr5_1	mRNA	58050533	58057100	58050533	ID=Msa0739690-mRNA-1;Parent=Msa0739690;Name=Msa0739690-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0\|0\|0\|1\|0\|0\|2\|0\|196
chr5_1	exon	58050533	58050775	58050533	ID=Msa0739690-mRNA-1:exon:16565;Parent=Msa0739690-mRNA-1
chr5_1	exon	58056753	58057100	58056753	ID=Msa0739690-mRNA-1:exon:16566;Parent=Msa0739690-mRNA-1
chr5_1	CDS	58050533	58050775	58050533	ID=Msa0739690-mRNA-1:cds;Parent=Msa0739690-mRNA-1
chr5_1	CDS	58056753	58057100	58056753	ID=Msa0739690-mRNA-1:cds;Parent=Msa0739690-mRNA-1

Gene Sequence

>Msa0739690

ATGCTTAAAGTATTAGCTTATCTTCTTTCTTACACTAATTTATTCATTAACACTAACACAAAAACTTCAATTTTCTCTTCTTCTCTTCAAAAACCACTTGTTATATTCAACTCAATGAAAACCAGTTTCAGTTTCTTACTTTTTATCATCTTGTTACTAGCTTCACCATCATTCATAGTCATAACAGAATCAAAGTGTAACAAAGGTTGTAATTTAGCTCTAGCTTCATACACCTTAACCAATCCAGAAGAAACATATACACCAGTTGCTGAAGAGAGTTTTTCAAATTTGACCACTGATGTTTGGATGCAAAACTTCAATGTTTACAGACCAACTAATATTCCTGATTTTGCAATGATTAATGTTACTGTTAATTGTTCTTGTGGGAATAGAGAGGTTTCTATGGATTATGGTTTGTTCATTACATATCCTCTTAGAAGTGAGGATACTTTGGAGTCTATTGCAAAGGATACTAAGATTGAGGCTGAGTTGTTGCAGAGGTATAACCCTGGTGTTGATTTCAGCCAAGGAAGTGGTCTTGTTTTTATCCCAGGGAAAGGTTTGATTTTTGATTTTTCTATGAACTCTTAA

Protein sequence

>Msa0739690

MLKVLAYLLSYTNLFINTNTKTSIFSSSLQKPLVIFNSMKTSFSFLLFIILLLASPSFIVITESKCNKGCNLALASYTLTNPEETYTPVAEESFSNLTTDVWMQNFNVYRPTNIPDFAMINVTVNCSCGNREVSMDYGLFITYPLRSEDTLESIAKDTKIEAELLQRYNPGVDFSQGSGLVFIPGKGLIFDFSMNS*