Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740080 | XP_003617057.2 | 96.063 | 254 | 10 | 0 | 1 | 254 | 1 | 254 | 7.85e-179 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740080 | sp|D9UC01|RTM2D_ARATH | 34.091 | 88 | 57 | 1 | 14 | 100 | 16 | 103 | 6.50e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740080 | G7KHG4 | 96.063 | 254 | 10 | 0 | 1 | 254 | 1 | 254 | 3.75e-179 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0740080 | Msa0782740 | 0.840889 | 6.624312e-58 | -8.615850e-47 |
| Msa0740080 | Msa0820370 | 0.948690 | 5.718165e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740080 | MtrunA17_Chr5g0440291 | 96.063 | 254 | 10 | 0 | 1 | 254 | 1 | 254 | 0.0 | 501 |
| Msa0740080 | MtrunA17_Chr5g0439551 | 92.126 | 127 | 10 | 0 | 62 | 188 | 1 | 127 | 6.46e-71 | 213 |
| Msa0740080 | MtrunA17_Chr5g0440311 | 44.172 | 163 | 79 | 4 | 11 | 169 | 10 | 164 | 6.72e-35 | 125 |
| Msa0740080 | MtrunA17_Chr5g0440321 | 33.074 | 257 | 148 | 8 | 9 | 243 | 8 | 262 | 2.99e-28 | 108 |
| Msa0740080 | MtrunA17_Chr7g0253661 | 40.860 | 93 | 55 | 0 | 11 | 103 | 8 | 100 | 6.60e-20 | 84.7 |
| Msa0740080 | MtrunA17_Chr6g0481571 | 40.659 | 91 | 54 | 0 | 10 | 100 | 10 | 100 | 1.90e-18 | 80.1 |
| Msa0740080 | MtrunA17_Chr4g0060201 | 27.234 | 235 | 156 | 5 | 13 | 237 | 21 | 250 | 3.33e-16 | 75.9 |
| Msa0740080 | MtrunA17_Chr8g0356011 | 36.667 | 90 | 56 | 1 | 12 | 100 | 22 | 111 | 5.44e-15 | 73.9 |
| Msa0740080 | MtrunA17_Chr1g0188351 | 34.454 | 119 | 63 | 4 | 20 | 125 | 77 | 193 | 6.09e-13 | 65.9 |
| Msa0740080 | MtrunA17_Chr3g0078561 | 30.328 | 122 | 74 | 3 | 13 | 123 | 19 | 140 | 3.11e-12 | 65.9 |
| Msa0740080 | MtrunA17_Chr1g0188321 | 32.174 | 115 | 65 | 3 | 22 | 125 | 78 | 190 | 8.93e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740080 | AT2G27140.1 | 38.764 | 178 | 93 | 4 | 10 | 174 | 10 | 184 | 9.19e-32 | 117 |
| Msa0740080 | AT5G20970.1 | 34.538 | 249 | 133 | 6 | 11 | 243 | 7 | 241 | 2.57e-28 | 108 |
| Msa0740080 | AT1G54400.1 | 38.462 | 91 | 55 | 1 | 13 | 102 | 12 | 102 | 5.39e-13 | 65.9 |
| Msa0740080 | AT5G04890.1 | 34.091 | 88 | 57 | 1 | 14 | 100 | 16 | 103 | 8.53e-13 | 67.8 |
| Msa0740080 | AT4G10250.1 | 37.363 | 91 | 46 | 2 | 22 | 101 | 74 | 164 | 6.34e-12 | 63.2 |
Find 41 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGGATTCCCGCTTCAAATT+TGG | 0.203921 | 5_1:-58894307 | None:intergenic |
| ACTTCTTCAATTTCTTTGTT+TGG | 0.273292 | 5_1:-58894498 | None:intergenic |
| GGTTTCTGAGGAATTGTTGC+TGG | 0.343124 | 5_1:-58894423 | None:intergenic |
| AAATTGAAGAAGTGTCTAAA+AGG | 0.356274 | 5_1:+58894508 | Msa0740080:CDS |
| AAAGAAGCTGGTTAATTTGT+TGG | 0.363334 | 5_1:+58894698 | Msa0740080:CDS |
| ACACTTATTCTTATGCTTCC+AGG | 0.372973 | 5_1:+58893924 | Msa0740080:CDS |
| GTTTGGGAAGCTTAACATAT+AGG | 0.376009 | 5_1:-58894326 | None:intergenic |
| AATTTGAACCACCCTCTGAT+TGG | 0.401334 | 5_1:+58893880 | Msa0740080:CDS |
| AATTAATCAATTACAACTCT+TGG | 0.411666 | 5_1:-58894800 | None:intergenic |
| GAAACTTGAGGAGCAGTGTT+TGG | 0.417491 | 5_1:-58894444 | None:intergenic |
| AAAGTCACTGACTATGGAAA+TGG | 0.440984 | 5_1:+58894611 | Msa0740080:CDS |
| ATTTGAACCACCCTCTGATT+GGG | 0.445092 | 5_1:+58893881 | Msa0740080:CDS |
| TGTTATCATGTCAATAAGTT+CGG | 0.445744 | 5_1:+58894835 | Msa0740080:three_prime_UTR |
| ACCCGTGTGCTAAGGGTTAG+TGG | 0.463763 | 5_1:+58894198 | Msa0740080:CDS |
| TGTGAATGCATTATGTGGTT+TGG | 0.466194 | 5_1:+58894656 | Msa0740080:CDS |
| AACCCTTAGCACACGGGTTG+AGG | 0.474881 | 5_1:-58894193 | None:intergenic |
| GTGTCTAAAAGGAAGGGAAA+AGG | 0.475085 | 5_1:+58894519 | Msa0740080:CDS |
| TGAAGAAGTGTCTAAAAGGA+AGG | 0.482631 | 5_1:+58894512 | Msa0740080:CDS |
| TAACCTCAACCCGTGTGCTA+AGG | 0.497781 | 5_1:+58894190 | Msa0740080:CDS |
| CATTCTGACACTAGCAGCAT+TGG | 0.497948 | 5_1:+58894282 | Msa0740080:CDS |
| CACCACTAACCCTTAGCACA+CGG | 0.507093 | 5_1:-58894200 | None:intergenic |
| ATTTAAGAAGGATCAATTGA+GGG | 0.509297 | 5_1:+58894161 | Msa0740080:CDS |
| GGAATTGTTGCTGGTTGTTG+AGG | 0.516048 | 5_1:-58894414 | None:intergenic |
| GATTTAAGAAGGATCAATTG+AGG | 0.534085 | 5_1:+58894160 | Msa0740080:CDS |
| AATACATGCAGGATTTAAGA+AGG | 0.538421 | 5_1:+58894149 | Msa0740080:intron |
| AACCTCAACCCGTGTGCTAA+GGG | 0.546287 | 5_1:+58894191 | Msa0740080:CDS |
| ATTGGTGCCAAATTTGAAGC+GGG | 0.549918 | 5_1:+58894300 | Msa0740080:CDS |
| TAATTTGTCTAAGCTCTCGT+TGG | 0.551861 | 5_1:-58893759 | None:intergenic |
| GGAGCAGTGTTTGGTTTCTG+AGG | 0.565721 | 5_1:-58894435 | None:intergenic |
| AGTTAAGAAGCAAAAGAAGC+TGG | 0.568685 | 5_1:+58894686 | Msa0740080:CDS |
| ACCACTAACCCTTAGCACAC+GGG | 0.576619 | 5_1:-58894199 | None:intergenic |
| GAATATGTGAATGCATTATG+TGG | 0.588342 | 5_1:+58894651 | Msa0740080:CDS |
| GAAGAAGTGTCTAAAAGGAA+GGG | 0.593904 | 5_1:+58894513 | Msa0740080:CDS |
| CATTGGTGCCAAATTTGAAG+CGG | 0.594150 | 5_1:+58894299 | Msa0740080:CDS |
| ACCCTCTGATTGGGATCATG+AGG | 0.602046 | 5_1:+58893890 | Msa0740080:CDS |
| TCCTCATGATCCCAATCAGA+GGG | 0.610175 | 5_1:-58893891 | None:intergenic |
| GAAGGGAAAAGGTAAAGCTG+AGG | 0.645097 | 5_1:+58894530 | Msa0740080:CDS |
| ATCCTCATGATCCCAATCAG+AGG | 0.659662 | 5_1:-58893892 | None:intergenic |
| ATGCTGCTAGTGTCAGAATG+AGG | 0.675243 | 5_1:-58894279 | None:intergenic |
| TCATGATCCCAATCAGAGGG+TGG | 0.690466 | 5_1:-58893888 | None:intergenic |
| CTGCTAGTGTCAGAATGAGG+TGG | 0.722333 | 5_1:-58894276 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTTTGATAAAACTTAA+AGG | + | chr5_1:58894051-58894070 | Msa0740080:intron | 15.0% |
| !!! | GTAATTAATTCATTTTTTTC+AGG | + | chr5_1:58894765-58894784 | Msa0740080:CDS | 15.0% |
| !! | AAGAGAATAAAAAATGTTTA+AGG | + | chr5_1:58894906-58894925 | Msa0740080:three_prime_UTR | 15.0% |
| !!! | TTTCTTTTGATAAAACTTAA+AGG | + | chr5_1:58894051-58894070 | Msa0740080:intron | 15.0% |
| !!! | GTAATTAATTCATTTTTTTC+AGG | + | chr5_1:58894765-58894784 | Msa0740080:CDS | 15.0% |
| !! | AAGAGAATAAAAAATGTTTA+AGG | + | chr5_1:58894906-58894925 | Msa0740080:three_prime_UTR | 15.0% |
| !!! | ATTAATTCATTTTTTTCAGG+AGG | + | chr5_1:58894768-58894787 | Msa0740080:CDS | 20.0% |
| !! | AATTAATCAATTACAACTCT+TGG | - | chr5_1:58894803-58894822 | None:intergenic | 20.0% |
| !!! | ATTAATTCATTTTTTTCAGG+AGG | + | chr5_1:58894768-58894787 | Msa0740080:CDS | 20.0% |
| !! | AATTAATCAATTACAACTCT+TGG | - | chr5_1:58894803-58894822 | None:intergenic | 20.0% |
| ! | TATTATATGAAAAAGACACG+AGG | - | chr5_1:58893968-58893987 | None:intergenic | 25.0% |
| ! | GACAAATATATAAGTATACG+AGG | + | chr5_1:58894075-58894094 | Msa0740080:intron | 25.0% |
| ! | ATTTAAGAAGGATCAATTGA+GGG | + | chr5_1:58894161-58894180 | Msa0740080:CDS | 25.0% |
| ! | GACAAATGAATGAGAAAAAA+TGG | + | chr5_1:58894226-58894245 | Msa0740080:CDS | 25.0% |
| ! | ACTTCTTCAATTTCTTTGTT+TGG | - | chr5_1:58894501-58894520 | None:intergenic | 25.0% |
| !!! | AAATTGAAGAAGTGTCTAAA+AGG | + | chr5_1:58894508-58894527 | Msa0740080:CDS | 25.0% |
| ! | TGTTATCATGTCAATAAGTT+CGG | + | chr5_1:58894835-58894854 | Msa0740080:three_prime_UTR | 25.0% |
| ! | TATTATATGAAAAAGACACG+AGG | - | chr5_1:58893968-58893987 | None:intergenic | 25.0% |
| ! | GACAAATATATAAGTATACG+AGG | + | chr5_1:58894075-58894094 | Msa0740080:intron | 25.0% |
| ! | ATTTAAGAAGGATCAATTGA+GGG | + | chr5_1:58894161-58894180 | Msa0740080:CDS | 25.0% |
| ! | GACAAATGAATGAGAAAAAA+TGG | + | chr5_1:58894226-58894245 | Msa0740080:CDS | 25.0% |
| ! | ACTTCTTCAATTTCTTTGTT+TGG | - | chr5_1:58894501-58894520 | None:intergenic | 25.0% |
| !!! | AAATTGAAGAAGTGTCTAAA+AGG | + | chr5_1:58894508-58894527 | Msa0740080:CDS | 25.0% |
| ! | TGTTATCATGTCAATAAGTT+CGG | + | chr5_1:58894835-58894854 | Msa0740080:three_prime_UTR | 25.0% |
| AAGAAAGAAATGAACTAACC+TGG | - | chr5_1:58893945-58893964 | None:intergenic | 30.0% | |
| AATACATGCAGGATTTAAGA+AGG | + | chr5_1:58894149-58894168 | Msa0740080:intron | 30.0% | |
| GATTTAAGAAGGATCAATTG+AGG | + | chr5_1:58894160-58894179 | Msa0740080:CDS | 30.0% | |
| !!! | TTTTGTTGGTTGATGAGTTT+GGG | - | chr5_1:58894345-58894364 | None:intergenic | 30.0% |
| !!! | ATTTTGTTGGTTGATGAGTT+TGG | - | chr5_1:58894346-58894365 | None:intergenic | 30.0% |
| ! | GTGTTGGAACAATATTTTGT+TGG | - | chr5_1:58894359-58894378 | None:intergenic | 30.0% |
| !!! | TGTTGTGTTGTTGATTTTGT+TGG | - | chr5_1:58894381-58894400 | None:intergenic | 30.0% |
| !!! | GATGTACTACTTGTTTTTTC+TGG | - | chr5_1:58894473-58894492 | None:intergenic | 30.0% |
| ! | TGAAAAAAAGTCACTGACTA+TGG | + | chr5_1:58894605-58894624 | Msa0740080:CDS | 30.0% |
| GAATATGTGAATGCATTATG+TGG | + | chr5_1:58894651-58894670 | Msa0740080:CDS | 30.0% | |
| !! | AAAGAAGCTGGTTAATTTGT+TGG | + | chr5_1:58894698-58894717 | Msa0740080:CDS | 30.0% |
| AAGAAAGAAATGAACTAACC+TGG | - | chr5_1:58893945-58893964 | None:intergenic | 30.0% | |
| AATACATGCAGGATTTAAGA+AGG | + | chr5_1:58894149-58894168 | Msa0740080:intron | 30.0% | |
| GATTTAAGAAGGATCAATTG+AGG | + | chr5_1:58894160-58894179 | Msa0740080:CDS | 30.0% | |
| !!! | TTTTGTTGGTTGATGAGTTT+GGG | - | chr5_1:58894345-58894364 | None:intergenic | 30.0% |
| !!! | ATTTTGTTGGTTGATGAGTT+TGG | - | chr5_1:58894346-58894365 | None:intergenic | 30.0% |
| ! | GTGTTGGAACAATATTTTGT+TGG | - | chr5_1:58894359-58894378 | None:intergenic | 30.0% |
| !!! | TGTTGTGTTGTTGATTTTGT+TGG | - | chr5_1:58894381-58894400 | None:intergenic | 30.0% |
| !!! | GATGTACTACTTGTTTTTTC+TGG | - | chr5_1:58894473-58894492 | None:intergenic | 30.0% |
| ! | TGAAAAAAAGTCACTGACTA+TGG | + | chr5_1:58894605-58894624 | Msa0740080:CDS | 30.0% |
| GAATATGTGAATGCATTATG+TGG | + | chr5_1:58894651-58894670 | Msa0740080:CDS | 30.0% | |
| !! | AAAGAAGCTGGTTAATTTGT+TGG | + | chr5_1:58894698-58894717 | Msa0740080:CDS | 30.0% |
| ACACTTATTCTTATGCTTCC+AGG | + | chr5_1:58893924-58893943 | Msa0740080:CDS | 35.0% | |
| CTATGATCGATAATACATGC+AGG | + | chr5_1:58894138-58894157 | Msa0740080:intron | 35.0% | |
| GTTTGGGAAGCTTAACATAT+AGG | - | chr5_1:58894329-58894348 | None:intergenic | 35.0% | |
| !!! | GTTGTTGATTTTGTTGGTGT+TGG | - | chr5_1:58894375-58894394 | None:intergenic | 35.0% |
| !! | TTTTTCTGGTCAGAAACTTG+AGG | - | chr5_1:58894459-58894478 | None:intergenic | 35.0% |
| !! | TGAAGAAGTGTCTAAAAGGA+AGG | + | chr5_1:58894512-58894531 | Msa0740080:CDS | 35.0% |
| !! | GAAGAAGTGTCTAAAAGGAA+GGG | + | chr5_1:58894513-58894532 | Msa0740080:CDS | 35.0% |
| ! | AAAGTCACTGACTATGGAAA+TGG | + | chr5_1:58894611-58894630 | Msa0740080:CDS | 35.0% |
| TGTGAATGCATTATGTGGTT+TGG | + | chr5_1:58894656-58894675 | Msa0740080:CDS | 35.0% | |
| AGTTAAGAAGCAAAAGAAGC+TGG | + | chr5_1:58894686-58894705 | Msa0740080:CDS | 35.0% | |
| !! | TTTGTTGGTGCTTGTGTTTT+TGG | + | chr5_1:58894713-58894732 | Msa0740080:CDS | 35.0% |
| ACACTTATTCTTATGCTTCC+AGG | + | chr5_1:58893924-58893943 | Msa0740080:CDS | 35.0% | |
| CTATGATCGATAATACATGC+AGG | + | chr5_1:58894138-58894157 | Msa0740080:intron | 35.0% | |
| GTTTGGGAAGCTTAACATAT+AGG | - | chr5_1:58894329-58894348 | None:intergenic | 35.0% | |
| !!! | GTTGTTGATTTTGTTGGTGT+TGG | - | chr5_1:58894375-58894394 | None:intergenic | 35.0% |
| !! | TTTTTCTGGTCAGAAACTTG+AGG | - | chr5_1:58894459-58894478 | None:intergenic | 35.0% |
| !! | TGAAGAAGTGTCTAAAAGGA+AGG | + | chr5_1:58894512-58894531 | Msa0740080:CDS | 35.0% |
| !! | GAAGAAGTGTCTAAAAGGAA+GGG | + | chr5_1:58894513-58894532 | Msa0740080:CDS | 35.0% |
| ! | AAAGTCACTGACTATGGAAA+TGG | + | chr5_1:58894611-58894630 | Msa0740080:CDS | 35.0% |
| TGTGAATGCATTATGTGGTT+TGG | + | chr5_1:58894656-58894675 | Msa0740080:CDS | 35.0% | |
| AGTTAAGAAGCAAAAGAAGC+TGG | + | chr5_1:58894686-58894705 | Msa0740080:CDS | 35.0% | |
| !! | TTTGTTGGTGCTTGTGTTTT+TGG | + | chr5_1:58894713-58894732 | Msa0740080:CDS | 35.0% |
| AATTTGAACCACCCTCTGAT+TGG | + | chr5_1:58893880-58893899 | Msa0740080:CDS | 40.0% | |
| ATTTGAACCACCCTCTGATT+GGG | + | chr5_1:58893881-58893900 | Msa0740080:CDS | 40.0% | |
| !! | CATTGGTGCCAAATTTGAAG+CGG | + | chr5_1:58894299-58894318 | Msa0740080:CDS | 40.0% |
| !! | ATTGGTGCCAAATTTGAAGC+GGG | + | chr5_1:58894300-58894319 | Msa0740080:CDS | 40.0% |
| TAGGATTCCCGCTTCAAATT+TGG | - | chr5_1:58894310-58894329 | None:intergenic | 40.0% | |
| GTGTCTAAAAGGAAGGGAAA+AGG | + | chr5_1:58894519-58894538 | Msa0740080:CDS | 40.0% | |
| !!! | GTGTTTTTGGTCTTGCTGTT+TGG | + | chr5_1:58894726-58894745 | Msa0740080:CDS | 40.0% |
| AATTTGAACCACCCTCTGAT+TGG | + | chr5_1:58893880-58893899 | Msa0740080:CDS | 40.0% | |
| ATTTGAACCACCCTCTGATT+GGG | + | chr5_1:58893881-58893900 | Msa0740080:CDS | 40.0% | |
| !! | CATTGGTGCCAAATTTGAAG+CGG | + | chr5_1:58894299-58894318 | Msa0740080:CDS | 40.0% |
| !! | ATTGGTGCCAAATTTGAAGC+GGG | + | chr5_1:58894300-58894319 | Msa0740080:CDS | 40.0% |
| TAGGATTCCCGCTTCAAATT+TGG | - | chr5_1:58894310-58894329 | None:intergenic | 40.0% | |
| GTGTCTAAAAGGAAGGGAAA+AGG | + | chr5_1:58894519-58894538 | Msa0740080:CDS | 40.0% | |
| !!! | GTGTTTTTGGTCTTGCTGTT+TGG | + | chr5_1:58894726-58894745 | Msa0740080:CDS | 40.0% |
| TCCTCATGATCCCAATCAGA+GGG | - | chr5_1:58893894-58893913 | None:intergenic | 45.0% | |
| ATCCTCATGATCCCAATCAG+AGG | - | chr5_1:58893895-58893914 | None:intergenic | 45.0% | |
| ATGCTGCTAGTGTCAGAATG+AGG | - | chr5_1:58894282-58894301 | None:intergenic | 45.0% | |
| CATTCTGACACTAGCAGCAT+TGG | + | chr5_1:58894282-58894301 | Msa0740080:CDS | 45.0% | |
| ! | GGAATTGTTGCTGGTTGTTG+AGG | - | chr5_1:58894417-58894436 | None:intergenic | 45.0% |
| ! | GGTTTCTGAGGAATTGTTGC+TGG | - | chr5_1:58894426-58894445 | None:intergenic | 45.0% |
| GAAACTTGAGGAGCAGTGTT+TGG | - | chr5_1:58894447-58894466 | None:intergenic | 45.0% | |
| GAAGGGAAAAGGTAAAGCTG+AGG | + | chr5_1:58894530-58894549 | Msa0740080:CDS | 45.0% | |
| TCCTCATGATCCCAATCAGA+GGG | - | chr5_1:58893894-58893913 | None:intergenic | 45.0% | |
| ATCCTCATGATCCCAATCAG+AGG | - | chr5_1:58893895-58893914 | None:intergenic | 45.0% | |
| ATGCTGCTAGTGTCAGAATG+AGG | - | chr5_1:58894282-58894301 | None:intergenic | 45.0% | |
| CATTCTGACACTAGCAGCAT+TGG | + | chr5_1:58894282-58894301 | Msa0740080:CDS | 45.0% | |
| ! | GGAATTGTTGCTGGTTGTTG+AGG | - | chr5_1:58894417-58894436 | None:intergenic | 45.0% |
| ! | GGTTTCTGAGGAATTGTTGC+TGG | - | chr5_1:58894426-58894445 | None:intergenic | 45.0% |
| GAAACTTGAGGAGCAGTGTT+TGG | - | chr5_1:58894447-58894466 | None:intergenic | 45.0% | |
| GAAGGGAAAAGGTAAAGCTG+AGG | + | chr5_1:58894530-58894549 | Msa0740080:CDS | 45.0% | |
| TCATGATCCCAATCAGAGGG+TGG | - | chr5_1:58893891-58893910 | None:intergenic | 50.0% | |
| ACCCTCTGATTGGGATCATG+AGG | + | chr5_1:58893890-58893909 | Msa0740080:CDS | 50.0% | |
| TAACCTCAACCCGTGTGCTA+AGG | + | chr5_1:58894190-58894209 | Msa0740080:CDS | 50.0% | |
| AACCTCAACCCGTGTGCTAA+GGG | + | chr5_1:58894191-58894210 | Msa0740080:CDS | 50.0% | |
| ACCACTAACCCTTAGCACAC+GGG | - | chr5_1:58894202-58894221 | None:intergenic | 50.0% | |
| CACCACTAACCCTTAGCACA+CGG | - | chr5_1:58894203-58894222 | None:intergenic | 50.0% | |
| CTGCTAGTGTCAGAATGAGG+TGG | - | chr5_1:58894279-58894298 | None:intergenic | 50.0% | |
| ! | GCTGGTTGTTGAGGCTTTTG+AGG | - | chr5_1:58894408-58894427 | None:intergenic | 50.0% |
| ! | GGAGCAGTGTTTGGTTTCTG+AGG | - | chr5_1:58894438-58894457 | None:intergenic | 50.0% |
| TCATGATCCCAATCAGAGGG+TGG | - | chr5_1:58893891-58893910 | None:intergenic | 50.0% | |
| ACCCTCTGATTGGGATCATG+AGG | + | chr5_1:58893890-58893909 | Msa0740080:CDS | 50.0% | |
| TAACCTCAACCCGTGTGCTA+AGG | + | chr5_1:58894190-58894209 | Msa0740080:CDS | 50.0% | |
| AACCTCAACCCGTGTGCTAA+GGG | + | chr5_1:58894191-58894210 | Msa0740080:CDS | 50.0% | |
| ACCACTAACCCTTAGCACAC+GGG | - | chr5_1:58894202-58894221 | None:intergenic | 50.0% | |
| CACCACTAACCCTTAGCACA+CGG | - | chr5_1:58894203-58894222 | None:intergenic | 50.0% | |
| CTGCTAGTGTCAGAATGAGG+TGG | - | chr5_1:58894279-58894298 | None:intergenic | 50.0% | |
| ! | GCTGGTTGTTGAGGCTTTTG+AGG | - | chr5_1:58894408-58894427 | None:intergenic | 50.0% |
| ! | GGAGCAGTGTTTGGTTTCTG+AGG | - | chr5_1:58894438-58894457 | None:intergenic | 50.0% |
| ! | AACCCTTAGCACACGGGTTG+AGG | - | chr5_1:58894196-58894215 | None:intergenic | 55.0% |
| ACCCGTGTGCTAAGGGTTAG+TGG | + | chr5_1:58894198-58894217 | Msa0740080:CDS | 55.0% | |
| ! | AACCCTTAGCACACGGGTTG+AGG | - | chr5_1:58894196-58894215 | None:intergenic | 55.0% |
| ACCCGTGTGCTAAGGGTTAG+TGG | + | chr5_1:58894198-58894217 | Msa0740080:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 58893761 | 58894991 | 58893761 | ID=Msa0740080;Name=Msa0740080 |
| chr5_1 | mRNA | 58893761 | 58894991 | 58893761 | ID=Msa0740080-mRNA-1;Parent=Msa0740080;Name=Msa0740080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=73|1|1|1|1|1|2|179|254 |
| chr5_1 | exon | 58893761 | 58893945 | 58893761 | ID=Msa0740080-mRNA-1:exon:16845;Parent=Msa0740080-mRNA-1 |
| chr5_1 | exon | 58894160 | 58894991 | 58894160 | ID=Msa0740080-mRNA-1:exon:16846;Parent=Msa0740080-mRNA-1 |
| chr5_1 | five_prime_UTR | 58893761 | 58893833 | 58893761 | ID=Msa0740080-mRNA-1:five_prime_utr;Parent=Msa0740080-mRNA-1 |
| chr5_1 | CDS | 58893834 | 58893945 | 58893834 | ID=Msa0740080-mRNA-1:cds;Parent=Msa0740080-mRNA-1 |
| chr5_1 | CDS | 58894160 | 58894812 | 58894160 | ID=Msa0740080-mRNA-1:cds;Parent=Msa0740080-mRNA-1 |
| chr5_1 | three_prime_UTR | 58894813 | 58894991 | 58894813 | ID=Msa0740080-mRNA-1:three_prime_utr;Parent=Msa0740080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
