Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820370 | XP_003617057.2 | 96.063 | 254 | 10 | 0 | 1 | 254 | 1 | 254 | 7.85e-179 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820370 | sp|D9UC01|RTM2D_ARATH | 34.091 | 88 | 57 | 1 | 14 | 100 | 16 | 103 | 6.50e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820370 | G7KHG4 | 96.063 | 254 | 10 | 0 | 1 | 254 | 1 | 254 | 3.75e-179 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0740080 | Msa0820370 | 0.948690 | 5.718165e-107 | -8.615850e-47 |
| Msa0782740 | Msa0820370 | 0.837973 | 3.789750e-57 | -8.615850e-47 |
| Msa0820370 | Msa1271040 | 0.801926 | 7.148474e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820370 | MtrunA17_Chr5g0440291 | 96.063 | 254 | 10 | 0 | 1 | 254 | 1 | 254 | 0.0 | 501 |
| Msa0820370 | MtrunA17_Chr5g0439551 | 92.126 | 127 | 10 | 0 | 62 | 188 | 1 | 127 | 6.46e-71 | 213 |
| Msa0820370 | MtrunA17_Chr5g0440311 | 44.172 | 163 | 79 | 4 | 11 | 169 | 10 | 164 | 6.72e-35 | 125 |
| Msa0820370 | MtrunA17_Chr5g0440321 | 33.074 | 257 | 148 | 8 | 9 | 243 | 8 | 262 | 2.99e-28 | 108 |
| Msa0820370 | MtrunA17_Chr7g0253661 | 40.860 | 93 | 55 | 0 | 11 | 103 | 8 | 100 | 6.60e-20 | 84.7 |
| Msa0820370 | MtrunA17_Chr6g0481571 | 40.659 | 91 | 54 | 0 | 10 | 100 | 10 | 100 | 1.90e-18 | 80.1 |
| Msa0820370 | MtrunA17_Chr4g0060201 | 27.234 | 235 | 156 | 5 | 13 | 237 | 21 | 250 | 3.33e-16 | 75.9 |
| Msa0820370 | MtrunA17_Chr8g0356011 | 36.667 | 90 | 56 | 1 | 12 | 100 | 22 | 111 | 5.44e-15 | 73.9 |
| Msa0820370 | MtrunA17_Chr1g0188351 | 34.454 | 119 | 63 | 4 | 20 | 125 | 77 | 193 | 6.09e-13 | 65.9 |
| Msa0820370 | MtrunA17_Chr3g0078561 | 30.328 | 122 | 74 | 3 | 13 | 123 | 19 | 140 | 3.11e-12 | 65.9 |
| Msa0820370 | MtrunA17_Chr1g0188321 | 32.174 | 115 | 65 | 3 | 22 | 125 | 78 | 190 | 8.93e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820370 | AT2G27140.1 | 38.764 | 178 | 93 | 4 | 10 | 174 | 10 | 184 | 9.19e-32 | 117 |
| Msa0820370 | AT5G20970.1 | 34.538 | 249 | 133 | 6 | 11 | 243 | 7 | 241 | 2.57e-28 | 108 |
| Msa0820370 | AT1G54400.1 | 38.462 | 91 | 55 | 1 | 13 | 102 | 12 | 102 | 5.39e-13 | 65.9 |
| Msa0820370 | AT5G04890.1 | 34.091 | 88 | 57 | 1 | 14 | 100 | 16 | 103 | 8.53e-13 | 67.8 |
| Msa0820370 | AT4G10250.1 | 37.363 | 91 | 46 | 2 | 22 | 101 | 74 | 164 | 6.34e-12 | 63.2 |
Find 42 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGAATAAAGAATGTTTA+AGG | 0.150469 | 5_3:+57659730 | Msa0820370:three_prime_UTR |
| TAGGATTCCCGCTTCAAATT+TGG | 0.203921 | 5_3:-57659131 | None:intergenic |
| ACTTCTTCAATTTCTTTGTT+TGG | 0.273292 | 5_3:-57659322 | None:intergenic |
| GGTTTCTGAGGAATTGTTGC+TGG | 0.343124 | 5_3:-57659247 | None:intergenic |
| AAATTGAAGAAGTGTCTAAA+AGG | 0.356274 | 5_3:+57659332 | Msa0820370:CDS |
| GAAGAAGCTGGTTAATTTGT+TGG | 0.370154 | 5_3:+57659522 | Msa0820370:CDS |
| ACACTTATTCTTATGCTTCC+AGG | 0.372973 | 5_3:+57658748 | Msa0820370:CDS |
| GTTTGGGAAGCTTAACATAT+AGG | 0.376009 | 5_3:-57659150 | None:intergenic |
| AAAGTCATTGACTATGGAAA+TGG | 0.386319 | 5_3:+57659435 | Msa0820370:CDS |
| AATTTGAACCACCCTCTGAT+TGG | 0.401334 | 5_3:+57658704 | Msa0820370:CDS |
| AATTAATCAATTACAACTCT+TGG | 0.411666 | 5_3:-57659624 | None:intergenic |
| GAAACTTGAGGAGCAGTGTT+TGG | 0.417491 | 5_3:-57659268 | None:intergenic |
| TAATTTGTCTAAGCTCTTGT+TGG | 0.418513 | 5_3:-57658583 | None:intergenic |
| ATTTGAACCACCCTCTGATT+GGG | 0.445092 | 5_3:+57658705 | Msa0820370:CDS |
| ACCCGTGTGCTAAGGGTTAG+TGG | 0.463763 | 5_3:+57659022 | Msa0820370:CDS |
| AACCCTTAGCACACGGGTTG+AGG | 0.474881 | 5_3:-57659017 | None:intergenic |
| GTGTCTAAAAGGAAGGGAAA+AGG | 0.475085 | 5_3:+57659343 | Msa0820370:CDS |
| TGAAGAAGTGTCTAAAAGGA+AGG | 0.482631 | 5_3:+57659336 | Msa0820370:CDS |
| TGTGAATGCATTATGTGGTT+TGG | 0.495211 | 5_3:+57659480 | Msa0820370:CDS |
| TAACCTCAACCCGTGTGCTA+AGG | 0.497781 | 5_3:+57659014 | Msa0820370:CDS |
| CATTCTGACACTAGCAGCAT+TGG | 0.497948 | 5_3:+57659106 | Msa0820370:CDS |
| CACCACTAACCCTTAGCACA+CGG | 0.507093 | 5_3:-57659024 | None:intergenic |
| ATTTAAGAAGGATCAATTGA+GGG | 0.509297 | 5_3:+57658985 | Msa0820370:CDS |
| GGAATTGTTGCTGGTTGTTG+AGG | 0.516048 | 5_3:-57659238 | None:intergenic |
| GAATGCATTATGTGGTTTGG+TGG | 0.533238 | 5_3:+57659483 | Msa0820370:CDS |
| GATTTAAGAAGGATCAATTG+AGG | 0.534085 | 5_3:+57658984 | Msa0820370:CDS |
| AATACATGCAGGATTTAAGA+AGG | 0.538421 | 5_3:+57658973 | Msa0820370:intron |
| AACCTCAACCCGTGTGCTAA+GGG | 0.546287 | 5_3:+57659015 | Msa0820370:CDS |
| AGTTAAGAAGCAGAAGAAGC+TGG | 0.549223 | 5_3:+57659510 | Msa0820370:CDS |
| ATTGGTGCCAAATTTGAAGC+GGG | 0.549918 | 5_3:+57659124 | Msa0820370:CDS |
| GGAGCAGTGTTTGGTTTCTG+AGG | 0.565721 | 5_3:-57659259 | None:intergenic |
| ACCACTAACCCTTAGCACAC+GGG | 0.576619 | 5_3:-57659023 | None:intergenic |
| GAATATGTGAATGCATTATG+TGG | 0.588342 | 5_3:+57659475 | Msa0820370:CDS |
| GAAGAAGTGTCTAAAAGGAA+GGG | 0.593904 | 5_3:+57659337 | Msa0820370:CDS |
| CATTGGTGCCAAATTTGAAG+CGG | 0.594150 | 5_3:+57659123 | Msa0820370:CDS |
| ACCCTCTGATTGGGATCATG+AGG | 0.602046 | 5_3:+57658714 | Msa0820370:CDS |
| TCCTCATGATCCCAATCAGA+GGG | 0.610175 | 5_3:-57658715 | None:intergenic |
| GAAGGGAAAAGGTAAAGCTG+AGG | 0.645097 | 5_3:+57659354 | Msa0820370:CDS |
| ATCCTCATGATCCCAATCAG+AGG | 0.659662 | 5_3:-57658716 | None:intergenic |
| ATGCTGCTAGTGTCAGAATG+AGG | 0.675243 | 5_3:-57659103 | None:intergenic |
| TCATGATCCCAATCAGAGGG+TGG | 0.690466 | 5_3:-57658712 | None:intergenic |
| CTGCTAGTGTCAGAATGAGG+TGG | 0.722333 | 5_3:-57659100 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTTTGATAAAACTTAA+AGG | + | chr5_3:57658875-57658894 | Msa0820370:intron | 15.0% |
| !!! | GTAATTAATTCATTTTTTTC+AGG | + | chr5_3:57659589-57659608 | Msa0820370:CDS | 15.0% |
| !!! | TTTCTTTTGATAAAACTTAA+AGG | + | chr5_3:57658875-57658894 | Msa0820370:intron | 15.0% |
| !!! | GTAATTAATTCATTTTTTTC+AGG | + | chr5_3:57659589-57659608 | Msa0820370:CDS | 15.0% |
| !! | TGAATTTATAAACTATAGCT+AGG | - | chr5_3:57658854-57658873 | None:intergenic | 20.0% |
| !!! | ATTAATTCATTTTTTTCAGG+AGG | + | chr5_3:57659592-57659611 | Msa0820370:CDS | 20.0% |
| !! | AATTAATCAATTACAACTCT+TGG | - | chr5_3:57659627-57659646 | None:intergenic | 20.0% |
| !! | AAGAGAATAAAGAATGTTTA+AGG | + | chr5_3:57659730-57659749 | Msa0820370:three_prime_UTR | 20.0% |
| !! | TGAATTTATAAACTATAGCT+AGG | - | chr5_3:57658854-57658873 | None:intergenic | 20.0% |
| !!! | ATTAATTCATTTTTTTCAGG+AGG | + | chr5_3:57659592-57659611 | Msa0820370:CDS | 20.0% |
| !! | AATTAATCAATTACAACTCT+TGG | - | chr5_3:57659627-57659646 | None:intergenic | 20.0% |
| !! | AAGAGAATAAAGAATGTTTA+AGG | + | chr5_3:57659730-57659749 | Msa0820370:three_prime_UTR | 20.0% |
| ! | TATTATATGAAAAAGACACG+AGG | - | chr5_3:57658792-57658811 | None:intergenic | 25.0% |
| ! | GACAAATATATAAGTATACG+AGG | + | chr5_3:57658899-57658918 | Msa0820370:intron | 25.0% |
| ! | ATTTAAGAAGGATCAATTGA+GGG | + | chr5_3:57658985-57659004 | Msa0820370:CDS | 25.0% |
| ! | GACAAATGAATGAGAAAAAA+TGG | + | chr5_3:57659050-57659069 | Msa0820370:CDS | 25.0% |
| ! | ACTTCTTCAATTTCTTTGTT+TGG | - | chr5_3:57659325-57659344 | None:intergenic | 25.0% |
| !!! | AAATTGAAGAAGTGTCTAAA+AGG | + | chr5_3:57659332-57659351 | Msa0820370:CDS | 25.0% |
| !! | TGAAAAAAAGTCATTGACTA+TGG | + | chr5_3:57659429-57659448 | Msa0820370:CDS | 25.0% |
| ! | TATTATATGAAAAAGACACG+AGG | - | chr5_3:57658792-57658811 | None:intergenic | 25.0% |
| ! | GACAAATATATAAGTATACG+AGG | + | chr5_3:57658899-57658918 | Msa0820370:intron | 25.0% |
| ! | ATTTAAGAAGGATCAATTGA+GGG | + | chr5_3:57658985-57659004 | Msa0820370:CDS | 25.0% |
| ! | GACAAATGAATGAGAAAAAA+TGG | + | chr5_3:57659050-57659069 | Msa0820370:CDS | 25.0% |
| ! | ACTTCTTCAATTTCTTTGTT+TGG | - | chr5_3:57659325-57659344 | None:intergenic | 25.0% |
| !!! | AAATTGAAGAAGTGTCTAAA+AGG | + | chr5_3:57659332-57659351 | Msa0820370:CDS | 25.0% |
| !! | TGAAAAAAAGTCATTGACTA+TGG | + | chr5_3:57659429-57659448 | Msa0820370:CDS | 25.0% |
| AAGAAAGAAATGAACTAACC+TGG | - | chr5_3:57658769-57658788 | None:intergenic | 30.0% | |
| AATACATGCAGGATTTAAGA+AGG | + | chr5_3:57658973-57658992 | Msa0820370:intron | 30.0% | |
| GATTTAAGAAGGATCAATTG+AGG | + | chr5_3:57658984-57659003 | Msa0820370:CDS | 30.0% | |
| !!! | TTTTGTTGGTTGATGAGTTT+GGG | - | chr5_3:57659169-57659188 | None:intergenic | 30.0% |
| !!! | ATTTTGTTGGTTGATGAGTT+TGG | - | chr5_3:57659170-57659189 | None:intergenic | 30.0% |
| ! | GTGTTGGAACAATATTTTGT+TGG | - | chr5_3:57659183-57659202 | None:intergenic | 30.0% |
| !!! | TGTTGTGTTGTTGATTTTGT+TGG | - | chr5_3:57659205-57659224 | None:intergenic | 30.0% |
| ! | AAAGTCATTGACTATGGAAA+TGG | + | chr5_3:57659435-57659454 | Msa0820370:CDS | 30.0% |
| GAATATGTGAATGCATTATG+TGG | + | chr5_3:57659475-57659494 | Msa0820370:CDS | 30.0% | |
| AAGAAAGAAATGAACTAACC+TGG | - | chr5_3:57658769-57658788 | None:intergenic | 30.0% | |
| AATACATGCAGGATTTAAGA+AGG | + | chr5_3:57658973-57658992 | Msa0820370:intron | 30.0% | |
| GATTTAAGAAGGATCAATTG+AGG | + | chr5_3:57658984-57659003 | Msa0820370:CDS | 30.0% | |
| !!! | TTTTGTTGGTTGATGAGTTT+GGG | - | chr5_3:57659169-57659188 | None:intergenic | 30.0% |
| !!! | ATTTTGTTGGTTGATGAGTT+TGG | - | chr5_3:57659170-57659189 | None:intergenic | 30.0% |
| ! | GTGTTGGAACAATATTTTGT+TGG | - | chr5_3:57659183-57659202 | None:intergenic | 30.0% |
| !!! | TGTTGTGTTGTTGATTTTGT+TGG | - | chr5_3:57659205-57659224 | None:intergenic | 30.0% |
| ! | AAAGTCATTGACTATGGAAA+TGG | + | chr5_3:57659435-57659454 | Msa0820370:CDS | 30.0% |
| GAATATGTGAATGCATTATG+TGG | + | chr5_3:57659475-57659494 | Msa0820370:CDS | 30.0% | |
| ACACTTATTCTTATGCTTCC+AGG | + | chr5_3:57658748-57658767 | Msa0820370:CDS | 35.0% | |
| CTATGATCGATAATACATGC+AGG | + | chr5_3:57658962-57658981 | Msa0820370:intron | 35.0% | |
| GTTTGGGAAGCTTAACATAT+AGG | - | chr5_3:57659153-57659172 | None:intergenic | 35.0% | |
| !!! | GTTGTTGATTTTGTTGGTGT+TGG | - | chr5_3:57659199-57659218 | None:intergenic | 35.0% |
| !! | TTTTTCTGGTCAGAAACTTG+AGG | - | chr5_3:57659283-57659302 | None:intergenic | 35.0% |
| !!! | GATGCACTACTTGTTTTTTC+TGG | - | chr5_3:57659297-57659316 | None:intergenic | 35.0% |
| !! | TGAAGAAGTGTCTAAAAGGA+AGG | + | chr5_3:57659336-57659355 | Msa0820370:CDS | 35.0% |
| !! | GAAGAAGTGTCTAAAAGGAA+GGG | + | chr5_3:57659337-57659356 | Msa0820370:CDS | 35.0% |
| TGTGAATGCATTATGTGGTT+TGG | + | chr5_3:57659480-57659499 | Msa0820370:CDS | 35.0% | |
| !! | GAAGAAGCTGGTTAATTTGT+TGG | + | chr5_3:57659522-57659541 | Msa0820370:CDS | 35.0% |
| !! | TTTGTTGGTGCTTGTGTTTT+TGG | + | chr5_3:57659537-57659556 | Msa0820370:CDS | 35.0% |
| ACACTTATTCTTATGCTTCC+AGG | + | chr5_3:57658748-57658767 | Msa0820370:CDS | 35.0% | |
| CTATGATCGATAATACATGC+AGG | + | chr5_3:57658962-57658981 | Msa0820370:intron | 35.0% | |
| GTTTGGGAAGCTTAACATAT+AGG | - | chr5_3:57659153-57659172 | None:intergenic | 35.0% | |
| !!! | GTTGTTGATTTTGTTGGTGT+TGG | - | chr5_3:57659199-57659218 | None:intergenic | 35.0% |
| !! | TTTTTCTGGTCAGAAACTTG+AGG | - | chr5_3:57659283-57659302 | None:intergenic | 35.0% |
| !!! | GATGCACTACTTGTTTTTTC+TGG | - | chr5_3:57659297-57659316 | None:intergenic | 35.0% |
| !! | TGAAGAAGTGTCTAAAAGGA+AGG | + | chr5_3:57659336-57659355 | Msa0820370:CDS | 35.0% |
| !! | GAAGAAGTGTCTAAAAGGAA+GGG | + | chr5_3:57659337-57659356 | Msa0820370:CDS | 35.0% |
| TGTGAATGCATTATGTGGTT+TGG | + | chr5_3:57659480-57659499 | Msa0820370:CDS | 35.0% | |
| !! | GAAGAAGCTGGTTAATTTGT+TGG | + | chr5_3:57659522-57659541 | Msa0820370:CDS | 35.0% |
| !! | TTTGTTGGTGCTTGTGTTTT+TGG | + | chr5_3:57659537-57659556 | Msa0820370:CDS | 35.0% |
| AATTTGAACCACCCTCTGAT+TGG | + | chr5_3:57658704-57658723 | Msa0820370:CDS | 40.0% | |
| ATTTGAACCACCCTCTGATT+GGG | + | chr5_3:57658705-57658724 | Msa0820370:CDS | 40.0% | |
| !! | CATTGGTGCCAAATTTGAAG+CGG | + | chr5_3:57659123-57659142 | Msa0820370:CDS | 40.0% |
| !! | ATTGGTGCCAAATTTGAAGC+GGG | + | chr5_3:57659124-57659143 | Msa0820370:CDS | 40.0% |
| TAGGATTCCCGCTTCAAATT+TGG | - | chr5_3:57659134-57659153 | None:intergenic | 40.0% | |
| GTGTCTAAAAGGAAGGGAAA+AGG | + | chr5_3:57659343-57659362 | Msa0820370:CDS | 40.0% | |
| ! | GAATGCATTATGTGGTTTGG+TGG | + | chr5_3:57659483-57659502 | Msa0820370:CDS | 40.0% |
| AGTTAAGAAGCAGAAGAAGC+TGG | + | chr5_3:57659510-57659529 | Msa0820370:CDS | 40.0% | |
| !!! | GTGTTTTTGGTCTTGCTGTT+TGG | + | chr5_3:57659550-57659569 | Msa0820370:CDS | 40.0% |
| AATTTGAACCACCCTCTGAT+TGG | + | chr5_3:57658704-57658723 | Msa0820370:CDS | 40.0% | |
| ATTTGAACCACCCTCTGATT+GGG | + | chr5_3:57658705-57658724 | Msa0820370:CDS | 40.0% | |
| !! | CATTGGTGCCAAATTTGAAG+CGG | + | chr5_3:57659123-57659142 | Msa0820370:CDS | 40.0% |
| !! | ATTGGTGCCAAATTTGAAGC+GGG | + | chr5_3:57659124-57659143 | Msa0820370:CDS | 40.0% |
| TAGGATTCCCGCTTCAAATT+TGG | - | chr5_3:57659134-57659153 | None:intergenic | 40.0% | |
| GTGTCTAAAAGGAAGGGAAA+AGG | + | chr5_3:57659343-57659362 | Msa0820370:CDS | 40.0% | |
| ! | GAATGCATTATGTGGTTTGG+TGG | + | chr5_3:57659483-57659502 | Msa0820370:CDS | 40.0% |
| AGTTAAGAAGCAGAAGAAGC+TGG | + | chr5_3:57659510-57659529 | Msa0820370:CDS | 40.0% | |
| !!! | GTGTTTTTGGTCTTGCTGTT+TGG | + | chr5_3:57659550-57659569 | Msa0820370:CDS | 40.0% |
| TCCTCATGATCCCAATCAGA+GGG | - | chr5_3:57658718-57658737 | None:intergenic | 45.0% | |
| ATCCTCATGATCCCAATCAG+AGG | - | chr5_3:57658719-57658738 | None:intergenic | 45.0% | |
| ATGCTGCTAGTGTCAGAATG+AGG | - | chr5_3:57659106-57659125 | None:intergenic | 45.0% | |
| CATTCTGACACTAGCAGCAT+TGG | + | chr5_3:57659106-57659125 | Msa0820370:CDS | 45.0% | |
| ! | GGAATTGTTGCTGGTTGTTG+AGG | - | chr5_3:57659241-57659260 | None:intergenic | 45.0% |
| ! | GGTTTCTGAGGAATTGTTGC+TGG | - | chr5_3:57659250-57659269 | None:intergenic | 45.0% |
| GAAACTTGAGGAGCAGTGTT+TGG | - | chr5_3:57659271-57659290 | None:intergenic | 45.0% | |
| GAAGGGAAAAGGTAAAGCTG+AGG | + | chr5_3:57659354-57659373 | Msa0820370:CDS | 45.0% | |
| TCCTCATGATCCCAATCAGA+GGG | - | chr5_3:57658718-57658737 | None:intergenic | 45.0% | |
| ATCCTCATGATCCCAATCAG+AGG | - | chr5_3:57658719-57658738 | None:intergenic | 45.0% | |
| ATGCTGCTAGTGTCAGAATG+AGG | - | chr5_3:57659106-57659125 | None:intergenic | 45.0% | |
| CATTCTGACACTAGCAGCAT+TGG | + | chr5_3:57659106-57659125 | Msa0820370:CDS | 45.0% | |
| ! | GGAATTGTTGCTGGTTGTTG+AGG | - | chr5_3:57659241-57659260 | None:intergenic | 45.0% |
| ! | GGTTTCTGAGGAATTGTTGC+TGG | - | chr5_3:57659250-57659269 | None:intergenic | 45.0% |
| GAAACTTGAGGAGCAGTGTT+TGG | - | chr5_3:57659271-57659290 | None:intergenic | 45.0% | |
| GAAGGGAAAAGGTAAAGCTG+AGG | + | chr5_3:57659354-57659373 | Msa0820370:CDS | 45.0% | |
| TCATGATCCCAATCAGAGGG+TGG | - | chr5_3:57658715-57658734 | None:intergenic | 50.0% | |
| ACCCTCTGATTGGGATCATG+AGG | + | chr5_3:57658714-57658733 | Msa0820370:CDS | 50.0% | |
| TAACCTCAACCCGTGTGCTA+AGG | + | chr5_3:57659014-57659033 | Msa0820370:CDS | 50.0% | |
| AACCTCAACCCGTGTGCTAA+GGG | + | chr5_3:57659015-57659034 | Msa0820370:CDS | 50.0% | |
| ACCACTAACCCTTAGCACAC+GGG | - | chr5_3:57659026-57659045 | None:intergenic | 50.0% | |
| CACCACTAACCCTTAGCACA+CGG | - | chr5_3:57659027-57659046 | None:intergenic | 50.0% | |
| CTGCTAGTGTCAGAATGAGG+TGG | - | chr5_3:57659103-57659122 | None:intergenic | 50.0% | |
| ! | GCTGGTTGTTGAGGCTTTTG+AGG | - | chr5_3:57659232-57659251 | None:intergenic | 50.0% |
| ! | GGAGCAGTGTTTGGTTTCTG+AGG | - | chr5_3:57659262-57659281 | None:intergenic | 50.0% |
| TCATGATCCCAATCAGAGGG+TGG | - | chr5_3:57658715-57658734 | None:intergenic | 50.0% | |
| ACCCTCTGATTGGGATCATG+AGG | + | chr5_3:57658714-57658733 | Msa0820370:CDS | 50.0% | |
| TAACCTCAACCCGTGTGCTA+AGG | + | chr5_3:57659014-57659033 | Msa0820370:CDS | 50.0% | |
| AACCTCAACCCGTGTGCTAA+GGG | + | chr5_3:57659015-57659034 | Msa0820370:CDS | 50.0% | |
| ACCACTAACCCTTAGCACAC+GGG | - | chr5_3:57659026-57659045 | None:intergenic | 50.0% | |
| CACCACTAACCCTTAGCACA+CGG | - | chr5_3:57659027-57659046 | None:intergenic | 50.0% | |
| CTGCTAGTGTCAGAATGAGG+TGG | - | chr5_3:57659103-57659122 | None:intergenic | 50.0% | |
| ! | GCTGGTTGTTGAGGCTTTTG+AGG | - | chr5_3:57659232-57659251 | None:intergenic | 50.0% |
| ! | GGAGCAGTGTTTGGTTTCTG+AGG | - | chr5_3:57659262-57659281 | None:intergenic | 50.0% |
| ! | AACCCTTAGCACACGGGTTG+AGG | - | chr5_3:57659020-57659039 | None:intergenic | 55.0% |
| ACCCGTGTGCTAAGGGTTAG+TGG | + | chr5_3:57659022-57659041 | Msa0820370:CDS | 55.0% | |
| ! | AACCCTTAGCACACGGGTTG+AGG | - | chr5_3:57659020-57659039 | None:intergenic | 55.0% |
| ACCCGTGTGCTAAGGGTTAG+TGG | + | chr5_3:57659022-57659041 | Msa0820370:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 57658585 | 57659815 | 57658585 | ID=Msa0820370;Name=Msa0820370 |
| chr5_3 | mRNA | 57658585 | 57659815 | 57658585 | ID=Msa0820370-mRNA-1;Parent=Msa0820370;Name=Msa0820370-mRNA-1;_AED=0.00;_eAED=0.00;_QI=73|1|1|1|1|1|2|179|254 |
| chr5_3 | exon | 57658585 | 57658769 | 57658585 | ID=Msa0820370-mRNA-1:exon:17426;Parent=Msa0820370-mRNA-1 |
| chr5_3 | exon | 57658984 | 57659815 | 57658984 | ID=Msa0820370-mRNA-1:exon:17427;Parent=Msa0820370-mRNA-1 |
| chr5_3 | five_prime_UTR | 57658585 | 57658657 | 57658585 | ID=Msa0820370-mRNA-1:five_prime_utr;Parent=Msa0820370-mRNA-1 |
| chr5_3 | CDS | 57658658 | 57658769 | 57658658 | ID=Msa0820370-mRNA-1:cds;Parent=Msa0820370-mRNA-1 |
| chr5_3 | CDS | 57658984 | 57659636 | 57658984 | ID=Msa0820370-mRNA-1:cds;Parent=Msa0820370-mRNA-1 |
| chr5_3 | three_prime_UTR | 57659637 | 57659815 | 57659637 | ID=Msa0820370-mRNA-1:three_prime_utr;Parent=Msa0820370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
