Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782740 | sp|D9UC01|RTM2D_ARATH | 35.227 | 88 | 56 | 1 | 14 | 100 | 16 | 103 | 4.16e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782740 | G7KHG4 | 97.244 | 254 | 7 | 0 | 1 | 254 | 1 | 254 | 0.0 | 505 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031820 | Msa0782740 | 0.800988 | 1.113098e-48 | -8.615850e-47 |
| Msa0033880 | Msa0782740 | 0.806742 | 7.097085e-50 | -8.615850e-47 |
| Msa0039250 | Msa0782740 | 0.810129 | 1.344145e-50 | -8.615850e-47 |
| Msa0093850 | Msa0782740 | 0.815960 | 7.072246e-52 | -8.615850e-47 |
| Msa0633570 | Msa0782740 | 0.810280 | 1.246754e-50 | -8.615850e-47 |
| Msa0644030 | Msa0782740 | 0.816641 | 4.979732e-52 | -8.615850e-47 |
| Msa0659550 | Msa0782740 | 0.802867 | 4.574791e-49 | -8.615850e-47 |
| Msa0740080 | Msa0782740 | 0.840889 | 6.624312e-58 | -8.615850e-47 |
| Msa0782740 | Msa0782760 | 0.809678 | 1.680623e-50 | -8.615850e-47 |
| Msa0782740 | Msa0820370 | 0.837973 | 3.789750e-57 | -8.615850e-47 |
| Msa0782740 | Msa0963020 | 0.814485 | 1.504006e-51 | -8.615850e-47 |
| Msa0782740 | Msa0980940 | 0.807460 | 5.001033e-50 | -8.615850e-47 |
| Msa0782740 | Msa1020630 | 0.803028 | 4.238859e-49 | -8.615850e-47 |
| Msa0782740 | Msa1071770 | 0.831595 | 1.526902e-55 | -8.615850e-47 |
| Msa0782740 | Msa1098890 | 0.808500 | 3.004647e-50 | -8.615850e-47 |
| Msa0782740 | Msa1123350 | 0.808634 | 2.812945e-50 | -8.615850e-47 |
| Msa0782740 | Msa1127540 | 0.803105 | 4.085911e-49 | -8.615850e-47 |
| Msa0782740 | Msa1150820 | 0.802449 | 5.581916e-49 | -8.615850e-47 |
| Msa0782740 | Msa1158830 | 0.819435 | 1.163024e-52 | -8.615850e-47 |
| Msa0782740 | Msa1184330 | 0.806183 | 9.311052e-50 | -8.615850e-47 |
| Msa0782740 | Msa1201810 | 0.823633 | 1.246716e-53 | -8.615850e-47 |
| Msa0782740 | Msa1227940 | 0.831226 | 1.882010e-55 | -8.615850e-47 |
| Msa0782740 | Msa1356610 | 0.801328 | 9.484081e-49 | -8.615850e-47 |
| Msa0782740 | Msa1409950 | 0.837313 | 5.596429e-57 | -8.615850e-47 |
| Msa0127850 | Msa0782740 | 0.812860 | 3.428216e-51 | -8.615850e-47 |
| Msa0133720 | Msa0782740 | 0.805088 | 1.580531e-49 | -8.615850e-47 |
| Msa0133820 | Msa0782740 | 0.802054 | 6.731408e-49 | -8.615850e-47 |
| Msa0138360 | Msa0782740 | 0.806502 | 7.972816e-50 | -8.615850e-47 |
| Msa0147980 | Msa0782740 | 0.821084 | 4.873562e-53 | -8.615850e-47 |
| Msa0173890 | Msa0782740 | 0.801519 | 8.666027e-49 | -8.615850e-47 |
| Msa0174000 | Msa0782740 | 0.803795 | 2.938877e-49 | -8.615850e-47 |
| Msa0388770 | Msa0782740 | 0.804898 | 1.731912e-49 | -8.615850e-47 |
| Msa0411410 | Msa0782740 | 0.803033 | 4.228797e-49 | -8.615850e-47 |
| Msa0479200 | Msa0782740 | 0.800630 | 1.316959e-48 | -8.615850e-47 |
| Msa0241830 | Msa0782740 | 0.836265 | 1.035804e-56 | -8.615850e-47 |
| Msa0244970 | Msa0782740 | 0.820730 | 5.878864e-53 | -8.615850e-47 |
| Msa0244980 | Msa0782740 | 0.836683 | 8.103077e-57 | -8.615850e-47 |
| Msa0279850 | Msa0782740 | 0.803188 | 3.927223e-49 | -8.615850e-47 |
| Msa0283420 | Msa0782740 | 0.809815 | 1.569948e-50 | -8.615850e-47 |
| Msa0296250 | Msa0782740 | 0.836095 | 1.143660e-56 | -8.615850e-47 |
| Msa0296790 | Msa0782740 | 0.800078 | 1.706427e-48 | -8.615850e-47 |
| Msa0300320 | Msa0782740 | 0.802136 | 6.473781e-49 | -8.615850e-47 |
| Msa0322900 | Msa0782740 | 0.833806 | 4.316118e-56 | -8.615850e-47 |
| Msa0332640 | Msa0782740 | 0.808315 | 3.289211e-50 | -8.615850e-47 |
| Msa0341690 | Msa0782740 | 0.821087 | 4.863698e-53 | -8.615850e-47 |
| Msa0363810 | Msa0782740 | 0.803743 | 3.013149e-49 | -8.615850e-47 |
| Msa0485240 | Msa0782740 | 0.800065 | 1.716628e-48 | -8.615850e-47 |
| Msa0488790 | Msa0782740 | 0.801495 | 8.766822e-49 | -8.615850e-47 |
| Msa0531250 | Msa0782740 | 0.802098 | 6.590636e-49 | -8.615850e-47 |
| Msa0547990 | Msa0782740 | 0.812502 | 4.105393e-51 | -8.615850e-47 |
| Msa0593700 | Msa0782740 | 0.821598 | 3.708203e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782740 | MtrunA17_Chr5g0440291 | 97.244 | 254 | 7 | 0 | 1 | 254 | 1 | 254 | 0.0 | 505 |
| Msa0782740 | MtrunA17_Chr5g0439551 | 93.701 | 127 | 8 | 0 | 62 | 188 | 1 | 127 | 8.76e-72 | 216 |
| Msa0782740 | MtrunA17_Chr5g0440311 | 44.186 | 172 | 83 | 5 | 3 | 169 | 1 | 164 | 1.07e-35 | 128 |
| Msa0782740 | MtrunA17_Chr5g0440321 | 32.576 | 264 | 153 | 9 | 3 | 243 | 1 | 262 | 7.99e-28 | 107 |
| Msa0782740 | MtrunA17_Chr7g0253661 | 39.785 | 93 | 56 | 0 | 11 | 103 | 8 | 100 | 3.99e-19 | 82.8 |
| Msa0782740 | MtrunA17_Chr6g0481571 | 41.758 | 91 | 53 | 0 | 10 | 100 | 10 | 100 | 1.23e-18 | 80.5 |
| Msa0782740 | MtrunA17_Chr4g0060201 | 26.582 | 237 | 155 | 5 | 13 | 237 | 21 | 250 | 9.05e-17 | 77.4 |
| Msa0782740 | MtrunA17_Chr8g0356011 | 36.667 | 90 | 56 | 1 | 12 | 100 | 22 | 111 | 3.80e-15 | 74.3 |
| Msa0782740 | MtrunA17_Chr1g0188351 | 33.613 | 119 | 64 | 4 | 20 | 125 | 77 | 193 | 1.56e-12 | 64.7 |
| Msa0782740 | MtrunA17_Chr3g0078561 | 29.508 | 122 | 75 | 3 | 13 | 123 | 19 | 140 | 4.44e-12 | 65.5 |
| Msa0782740 | MtrunA17_Chr1g0188321 | 31.304 | 115 | 66 | 3 | 22 | 125 | 78 | 190 | 2.04e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0782740 | AT2G27140.1 | 37.640 | 178 | 95 | 4 | 10 | 174 | 10 | 184 | 5.77e-31 | 114 |
| Msa0782740 | AT5G20970.1 | 34.538 | 249 | 133 | 6 | 11 | 243 | 7 | 241 | 4.08e-28 | 108 |
| Msa0782740 | AT5G04890.1 | 35.227 | 88 | 56 | 1 | 14 | 100 | 16 | 103 | 5.46e-13 | 68.2 |
| Msa0782740 | AT1G54400.1 | 37.363 | 91 | 56 | 1 | 13 | 102 | 12 | 102 | 8.56e-13 | 65.5 |
| Msa0782740 | AT4G10250.1 | 37.363 | 91 | 46 | 2 | 22 | 101 | 74 | 164 | 1.19e-11 | 62.4 |
Find 43 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGAATAAAGAATGTTTA+AGG | 0.150469 | 5_2:+66050325 | Msa0782740:three_prime_UTR |
| TAAGATACCAGCTTCAAATT+TGG | 0.240286 | 5_2:-66049726 | None:intergenic |
| ACTTCTTCAATTTCTTTGTT+TGG | 0.273292 | 5_2:-66049917 | None:intergenic |
| TTCTTGTTGTGTTGTTGATT+TGG | 0.305462 | 5_2:-66049801 | None:intergenic |
| GGTTTCTGAGGAATTGTTGC+TGG | 0.343124 | 5_2:-66049842 | None:intergenic |
| AAATTGAAGAAGTGTCTAAA+AGG | 0.356274 | 5_2:+66049927 | Msa0782740:CDS |
| GAAGAAGCTGGTTAATTTGT+TGG | 0.370154 | 5_2:+66050117 | Msa0782740:CDS |
| ACACTTATTCTCATGCTTCC+AGG | 0.377100 | 5_2:+66049343 | Msa0782740:CDS |
| AAAGTCATTGACTATGGAAA+TGG | 0.386319 | 5_2:+66050030 | Msa0782740:CDS |
| AATTTGAACCACCCTCTGAT+TGG | 0.401334 | 5_2:+66049299 | Msa0782740:CDS |
| AATTAATCAATTACAACTCT+TGG | 0.411666 | 5_2:-66050219 | None:intergenic |
| GAAACTTGAGGAGCAGTGTT+TGG | 0.417491 | 5_2:-66049863 | None:intergenic |
| TAATTTGTCTAAGCTCTTGT+TGG | 0.418513 | 5_2:-66049174 | None:intergenic |
| GTTGTTGATTTGGTTGGTGT+TGG | 0.422621 | 5_2:-66049791 | None:intergenic |
| TGTTGTGTTGTTGATTTGGT+TGG | 0.444857 | 5_2:-66049797 | None:intergenic |
| ATTTGAACCACCCTCTGATT+GGG | 0.445092 | 5_2:+66049300 | Msa0782740:CDS |
| ACCCGTGTGCTAAGGGTTAG+TGG | 0.463763 | 5_2:+66049617 | Msa0782740:CDS |
| AACCCTTAGCACACGGGTTG+AGG | 0.474881 | 5_2:-66049612 | None:intergenic |
| GTGTCTAAAAGGAAGGGAAA+AGG | 0.475085 | 5_2:+66049938 | Msa0782740:CDS |
| TGAAGAAGTGTCTAAAAGGA+AGG | 0.482631 | 5_2:+66049931 | Msa0782740:CDS |
| TGTGAATGCATTATGTGGTT+TGG | 0.495211 | 5_2:+66050075 | Msa0782740:CDS |
| TAACCTCAACCCGTGTGCTA+AGG | 0.497781 | 5_2:+66049609 | Msa0782740:CDS |
| CACCACTAACCCTTAGCACA+CGG | 0.507093 | 5_2:-66049619 | None:intergenic |
| ATTTAAGAAGGATCAATTGA+GGG | 0.509297 | 5_2:+66049580 | Msa0782740:CDS |
| GGAATTGTTGCTGGTTGTTG+AGG | 0.516048 | 5_2:-66049833 | None:intergenic |
| ATTGGTGCCAAATTTGAAGC+TGG | 0.520171 | 5_2:+66049719 | Msa0782740:CDS |
| GAATGCATTATGTGGTTTGG+TGG | 0.533238 | 5_2:+66050078 | Msa0782740:CDS |
| GATTTAAGAAGGATCAATTG+AGG | 0.534085 | 5_2:+66049579 | Msa0782740:CDS |
| AATACATGCAGGATTTAAGA+AGG | 0.538421 | 5_2:+66049568 | Msa0782740:intron |
| AACCTCAACCCGTGTGCTAA+GGG | 0.546287 | 5_2:+66049610 | Msa0782740:CDS |
| AGTTAAGAAGCAGAAGAAGC+TGG | 0.549223 | 5_2:+66050105 | Msa0782740:CDS |
| GGAGCAGTGTTTGGTTTCTG+AGG | 0.565721 | 5_2:-66049854 | None:intergenic |
| CATTCTGACACTAGTAACAT+TGG | 0.571128 | 5_2:+66049701 | Msa0782740:CDS |
| ACCACTAACCCTTAGCACAC+GGG | 0.576619 | 5_2:-66049618 | None:intergenic |
| GAATATGTGAATGCATTATG+TGG | 0.588342 | 5_2:+66050070 | Msa0782740:CDS |
| GAAGAAGTGTCTAAAAGGAA+GGG | 0.593904 | 5_2:+66049932 | Msa0782740:CDS |
| ACCCTCTGATTGGGATCATG+AGG | 0.602046 | 5_2:+66049309 | Msa0782740:CDS |
| TCCTCATGATCCCAATCAGA+GGG | 0.610175 | 5_2:-66049310 | None:intergenic |
| ATGTTACTAGTGTCAGAATG+AGG | 0.615006 | 5_2:-66049698 | None:intergenic |
| GAAGGGAAAAGGTAAAGCTG+AGG | 0.645097 | 5_2:+66049949 | Msa0782740:CDS |
| ATCCTCATGATCCCAATCAG+AGG | 0.659662 | 5_2:-66049311 | None:intergenic |
| TTACTAGTGTCAGAATGAGG+TGG | 0.686289 | 5_2:-66049695 | None:intergenic |
| TCATGATCCCAATCAGAGGG+TGG | 0.690466 | 5_2:-66049307 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTTTGATAAAACTTAA+AGG | + | chr5_2:66049470-66049489 | Msa0782740:intron | 15.0% |
| !!! | GTAATTAATTCATTTTTTTC+AGG | + | chr5_2:66050184-66050203 | Msa0782740:CDS | 15.0% |
| !!! | TTTCTTTTGATAAAACTTAA+AGG | + | chr5_2:66049470-66049489 | Msa0782740:intron | 15.0% |
| !!! | GTAATTAATTCATTTTTTTC+AGG | + | chr5_2:66050184-66050203 | Msa0782740:CDS | 15.0% |
| !!! | ATTAATTCATTTTTTTCAGG+AGG | + | chr5_2:66050187-66050206 | Msa0782740:CDS | 20.0% |
| !! | AATTAATCAATTACAACTCT+TGG | - | chr5_2:66050222-66050241 | None:intergenic | 20.0% |
| !! | AAGAGAATAAAGAATGTTTA+AGG | + | chr5_2:66050325-66050344 | Msa0782740:three_prime_UTR | 20.0% |
| !!! | ATTAATTCATTTTTTTCAGG+AGG | + | chr5_2:66050187-66050206 | Msa0782740:CDS | 20.0% |
| !! | AATTAATCAATTACAACTCT+TGG | - | chr5_2:66050222-66050241 | None:intergenic | 20.0% |
| !! | AAGAGAATAAAGAATGTTTA+AGG | + | chr5_2:66050325-66050344 | Msa0782740:three_prime_UTR | 20.0% |
| ! | TATTATATGAAAAAGACACG+AGG | - | chr5_2:66049387-66049406 | None:intergenic | 25.0% |
| ! | GACAAATATATAAGTATACG+AGG | + | chr5_2:66049494-66049513 | Msa0782740:intron | 25.0% |
| ! | ATTTAAGAAGGATCAATTGA+GGG | + | chr5_2:66049580-66049599 | Msa0782740:CDS | 25.0% |
| ! | GACAAATGAATGAGAAAAAA+TGG | + | chr5_2:66049645-66049664 | Msa0782740:CDS | 25.0% |
| ! | ACTTCTTCAATTTCTTTGTT+TGG | - | chr5_2:66049920-66049939 | None:intergenic | 25.0% |
| !!! | AAATTGAAGAAGTGTCTAAA+AGG | + | chr5_2:66049927-66049946 | Msa0782740:CDS | 25.0% |
| !! | TGAAAAAAAGTCATTGACTA+TGG | + | chr5_2:66050024-66050043 | Msa0782740:CDS | 25.0% |
| ! | TATTATATGAAAAAGACACG+AGG | - | chr5_2:66049387-66049406 | None:intergenic | 25.0% |
| ! | GACAAATATATAAGTATACG+AGG | + | chr5_2:66049494-66049513 | Msa0782740:intron | 25.0% |
| ! | ATTTAAGAAGGATCAATTGA+GGG | + | chr5_2:66049580-66049599 | Msa0782740:CDS | 25.0% |
| ! | GACAAATGAATGAGAAAAAA+TGG | + | chr5_2:66049645-66049664 | Msa0782740:CDS | 25.0% |
| ! | ACTTCTTCAATTTCTTTGTT+TGG | - | chr5_2:66049920-66049939 | None:intergenic | 25.0% |
| !!! | AAATTGAAGAAGTGTCTAAA+AGG | + | chr5_2:66049927-66049946 | Msa0782740:CDS | 25.0% |
| !! | TGAAAAAAAGTCATTGACTA+TGG | + | chr5_2:66050024-66050043 | Msa0782740:CDS | 25.0% |
| !!! | CTCTTTAGCTTTTATGTTTC+TGG | - | chr5_2:66049211-66049230 | None:intergenic | 30.0% |
| AAGAAAGAAATGAACTAACC+TGG | - | chr5_2:66049364-66049383 | None:intergenic | 30.0% | |
| AATACATGCAGGATTTAAGA+AGG | + | chr5_2:66049568-66049587 | Msa0782740:intron | 30.0% | |
| GATTTAAGAAGGATCAATTG+AGG | + | chr5_2:66049579-66049598 | Msa0782740:CDS | 30.0% | |
| TAAGATACCAGCTTCAAATT+TGG | - | chr5_2:66049729-66049748 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGGTTGATGAGTTT+GGG | - | chr5_2:66049764-66049783 | None:intergenic | 30.0% |
| !!! | ATTTTGTTGGTTGATGAGTT+TGG | - | chr5_2:66049765-66049784 | None:intergenic | 30.0% |
| ! | GTGTTGGAACAATATTTTGT+TGG | - | chr5_2:66049778-66049797 | None:intergenic | 30.0% |
| ! | TTCTTGTTGTGTTGTTGATT+TGG | - | chr5_2:66049804-66049823 | None:intergenic | 30.0% |
| !!! | GATGTACTACTTGTTTTTTC+TGG | - | chr5_2:66049892-66049911 | None:intergenic | 30.0% |
| ! | AAAGTCATTGACTATGGAAA+TGG | + | chr5_2:66050030-66050049 | Msa0782740:CDS | 30.0% |
| GAATATGTGAATGCATTATG+TGG | + | chr5_2:66050070-66050089 | Msa0782740:CDS | 30.0% | |
| !!! | CTCTTTAGCTTTTATGTTTC+TGG | - | chr5_2:66049211-66049230 | None:intergenic | 30.0% |
| AAGAAAGAAATGAACTAACC+TGG | - | chr5_2:66049364-66049383 | None:intergenic | 30.0% | |
| AATACATGCAGGATTTAAGA+AGG | + | chr5_2:66049568-66049587 | Msa0782740:intron | 30.0% | |
| GATTTAAGAAGGATCAATTG+AGG | + | chr5_2:66049579-66049598 | Msa0782740:CDS | 30.0% | |
| TAAGATACCAGCTTCAAATT+TGG | - | chr5_2:66049729-66049748 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGGTTGATGAGTTT+GGG | - | chr5_2:66049764-66049783 | None:intergenic | 30.0% |
| !!! | ATTTTGTTGGTTGATGAGTT+TGG | - | chr5_2:66049765-66049784 | None:intergenic | 30.0% |
| ! | GTGTTGGAACAATATTTTGT+TGG | - | chr5_2:66049778-66049797 | None:intergenic | 30.0% |
| ! | TTCTTGTTGTGTTGTTGATT+TGG | - | chr5_2:66049804-66049823 | None:intergenic | 30.0% |
| !!! | GATGTACTACTTGTTTTTTC+TGG | - | chr5_2:66049892-66049911 | None:intergenic | 30.0% |
| ! | AAAGTCATTGACTATGGAAA+TGG | + | chr5_2:66050030-66050049 | Msa0782740:CDS | 30.0% |
| GAATATGTGAATGCATTATG+TGG | + | chr5_2:66050070-66050089 | Msa0782740:CDS | 30.0% | |
| !!! | AGCTTTTATGTTTCTGGCAA+AGG | - | chr5_2:66049205-66049224 | None:intergenic | 35.0% |
| CTATGATCGATAATACATGC+AGG | + | chr5_2:66049557-66049576 | Msa0782740:intron | 35.0% | |
| ATGTTACTAGTGTCAGAATG+AGG | - | chr5_2:66049701-66049720 | None:intergenic | 35.0% | |
| CATTCTGACACTAGTAACAT+TGG | + | chr5_2:66049701-66049720 | Msa0782740:CDS | 35.0% | |
| !! | TGTTGTGTTGTTGATTTGGT+TGG | - | chr5_2:66049800-66049819 | None:intergenic | 35.0% |
| !! | TTTTTCTGGTCAGAAACTTG+AGG | - | chr5_2:66049878-66049897 | None:intergenic | 35.0% |
| !! | TGAAGAAGTGTCTAAAAGGA+AGG | + | chr5_2:66049931-66049950 | Msa0782740:CDS | 35.0% |
| !! | GAAGAAGTGTCTAAAAGGAA+GGG | + | chr5_2:66049932-66049951 | Msa0782740:CDS | 35.0% |
| TGTGAATGCATTATGTGGTT+TGG | + | chr5_2:66050075-66050094 | Msa0782740:CDS | 35.0% | |
| !! | GAAGAAGCTGGTTAATTTGT+TGG | + | chr5_2:66050117-66050136 | Msa0782740:CDS | 35.0% |
| !! | TTTGTTGGTGCTTGTGTTTT+TGG | + | chr5_2:66050132-66050151 | Msa0782740:CDS | 35.0% |
| !!! | AGCTTTTATGTTTCTGGCAA+AGG | - | chr5_2:66049205-66049224 | None:intergenic | 35.0% |
| CTATGATCGATAATACATGC+AGG | + | chr5_2:66049557-66049576 | Msa0782740:intron | 35.0% | |
| ATGTTACTAGTGTCAGAATG+AGG | - | chr5_2:66049701-66049720 | None:intergenic | 35.0% | |
| CATTCTGACACTAGTAACAT+TGG | + | chr5_2:66049701-66049720 | Msa0782740:CDS | 35.0% | |
| !! | TGTTGTGTTGTTGATTTGGT+TGG | - | chr5_2:66049800-66049819 | None:intergenic | 35.0% |
| !! | TTTTTCTGGTCAGAAACTTG+AGG | - | chr5_2:66049878-66049897 | None:intergenic | 35.0% |
| !! | TGAAGAAGTGTCTAAAAGGA+AGG | + | chr5_2:66049931-66049950 | Msa0782740:CDS | 35.0% |
| !! | GAAGAAGTGTCTAAAAGGAA+GGG | + | chr5_2:66049932-66049951 | Msa0782740:CDS | 35.0% |
| TGTGAATGCATTATGTGGTT+TGG | + | chr5_2:66050075-66050094 | Msa0782740:CDS | 35.0% | |
| !! | GAAGAAGCTGGTTAATTTGT+TGG | + | chr5_2:66050117-66050136 | Msa0782740:CDS | 35.0% |
| !! | TTTGTTGGTGCTTGTGTTTT+TGG | + | chr5_2:66050132-66050151 | Msa0782740:CDS | 35.0% |
| AATTTGAACCACCCTCTGAT+TGG | + | chr5_2:66049299-66049318 | Msa0782740:CDS | 40.0% | |
| ATTTGAACCACCCTCTGATT+GGG | + | chr5_2:66049300-66049319 | Msa0782740:CDS | 40.0% | |
| ACACTTATTCTCATGCTTCC+AGG | + | chr5_2:66049343-66049362 | Msa0782740:CDS | 40.0% | |
| TTACTAGTGTCAGAATGAGG+TGG | - | chr5_2:66049698-66049717 | None:intergenic | 40.0% | |
| !! | ATTGGTGCCAAATTTGAAGC+TGG | + | chr5_2:66049719-66049738 | Msa0782740:CDS | 40.0% |
| !! | GTTGTTGATTTGGTTGGTGT+TGG | - | chr5_2:66049794-66049813 | None:intergenic | 40.0% |
| GTGTCTAAAAGGAAGGGAAA+AGG | + | chr5_2:66049938-66049957 | Msa0782740:CDS | 40.0% | |
| ! | GAATGCATTATGTGGTTTGG+TGG | + | chr5_2:66050078-66050097 | Msa0782740:CDS | 40.0% |
| AGTTAAGAAGCAGAAGAAGC+TGG | + | chr5_2:66050105-66050124 | Msa0782740:CDS | 40.0% | |
| !!! | GTGTTTTTGGTCTTGCTGTT+TGG | + | chr5_2:66050145-66050164 | Msa0782740:CDS | 40.0% |
| AATTTGAACCACCCTCTGAT+TGG | + | chr5_2:66049299-66049318 | Msa0782740:CDS | 40.0% | |
| ATTTGAACCACCCTCTGATT+GGG | + | chr5_2:66049300-66049319 | Msa0782740:CDS | 40.0% | |
| ACACTTATTCTCATGCTTCC+AGG | + | chr5_2:66049343-66049362 | Msa0782740:CDS | 40.0% | |
| TTACTAGTGTCAGAATGAGG+TGG | - | chr5_2:66049698-66049717 | None:intergenic | 40.0% | |
| !! | ATTGGTGCCAAATTTGAAGC+TGG | + | chr5_2:66049719-66049738 | Msa0782740:CDS | 40.0% |
| !! | GTTGTTGATTTGGTTGGTGT+TGG | - | chr5_2:66049794-66049813 | None:intergenic | 40.0% |
| GTGTCTAAAAGGAAGGGAAA+AGG | + | chr5_2:66049938-66049957 | Msa0782740:CDS | 40.0% | |
| ! | GAATGCATTATGTGGTTTGG+TGG | + | chr5_2:66050078-66050097 | Msa0782740:CDS | 40.0% |
| AGTTAAGAAGCAGAAGAAGC+TGG | + | chr5_2:66050105-66050124 | Msa0782740:CDS | 40.0% | |
| !!! | GTGTTTTTGGTCTTGCTGTT+TGG | + | chr5_2:66050145-66050164 | Msa0782740:CDS | 40.0% |
| TCCTCATGATCCCAATCAGA+GGG | - | chr5_2:66049313-66049332 | None:intergenic | 45.0% | |
| ATCCTCATGATCCCAATCAG+AGG | - | chr5_2:66049314-66049333 | None:intergenic | 45.0% | |
| ! | GGAATTGTTGCTGGTTGTTG+AGG | - | chr5_2:66049836-66049855 | None:intergenic | 45.0% |
| ! | GGTTTCTGAGGAATTGTTGC+TGG | - | chr5_2:66049845-66049864 | None:intergenic | 45.0% |
| GAAACTTGAGGAGCAGTGTT+TGG | - | chr5_2:66049866-66049885 | None:intergenic | 45.0% | |
| GAAGGGAAAAGGTAAAGCTG+AGG | + | chr5_2:66049949-66049968 | Msa0782740:CDS | 45.0% | |
| TCCTCATGATCCCAATCAGA+GGG | - | chr5_2:66049313-66049332 | None:intergenic | 45.0% | |
| ATCCTCATGATCCCAATCAG+AGG | - | chr5_2:66049314-66049333 | None:intergenic | 45.0% | |
| ! | GGAATTGTTGCTGGTTGTTG+AGG | - | chr5_2:66049836-66049855 | None:intergenic | 45.0% |
| ! | GGTTTCTGAGGAATTGTTGC+TGG | - | chr5_2:66049845-66049864 | None:intergenic | 45.0% |
| GAAACTTGAGGAGCAGTGTT+TGG | - | chr5_2:66049866-66049885 | None:intergenic | 45.0% | |
| GAAGGGAAAAGGTAAAGCTG+AGG | + | chr5_2:66049949-66049968 | Msa0782740:CDS | 45.0% | |
| TCATGATCCCAATCAGAGGG+TGG | - | chr5_2:66049310-66049329 | None:intergenic | 50.0% | |
| ACCCTCTGATTGGGATCATG+AGG | + | chr5_2:66049309-66049328 | Msa0782740:CDS | 50.0% | |
| TAACCTCAACCCGTGTGCTA+AGG | + | chr5_2:66049609-66049628 | Msa0782740:CDS | 50.0% | |
| AACCTCAACCCGTGTGCTAA+GGG | + | chr5_2:66049610-66049629 | Msa0782740:CDS | 50.0% | |
| ACCACTAACCCTTAGCACAC+GGG | - | chr5_2:66049621-66049640 | None:intergenic | 50.0% | |
| CACCACTAACCCTTAGCACA+CGG | - | chr5_2:66049622-66049641 | None:intergenic | 50.0% | |
| ! | GCTGGTTGTTGAGGCTTTTG+AGG | - | chr5_2:66049827-66049846 | None:intergenic | 50.0% |
| ! | GGAGCAGTGTTTGGTTTCTG+AGG | - | chr5_2:66049857-66049876 | None:intergenic | 50.0% |
| TCATGATCCCAATCAGAGGG+TGG | - | chr5_2:66049310-66049329 | None:intergenic | 50.0% | |
| ACCCTCTGATTGGGATCATG+AGG | + | chr5_2:66049309-66049328 | Msa0782740:CDS | 50.0% | |
| TAACCTCAACCCGTGTGCTA+AGG | + | chr5_2:66049609-66049628 | Msa0782740:CDS | 50.0% | |
| AACCTCAACCCGTGTGCTAA+GGG | + | chr5_2:66049610-66049629 | Msa0782740:CDS | 50.0% | |
| ACCACTAACCCTTAGCACAC+GGG | - | chr5_2:66049621-66049640 | None:intergenic | 50.0% | |
| CACCACTAACCCTTAGCACA+CGG | - | chr5_2:66049622-66049641 | None:intergenic | 50.0% | |
| ! | GCTGGTTGTTGAGGCTTTTG+AGG | - | chr5_2:66049827-66049846 | None:intergenic | 50.0% |
| ! | GGAGCAGTGTTTGGTTTCTG+AGG | - | chr5_2:66049857-66049876 | None:intergenic | 50.0% |
| ! | AACCCTTAGCACACGGGTTG+AGG | - | chr5_2:66049615-66049634 | None:intergenic | 55.0% |
| ACCCGTGTGCTAAGGGTTAG+TGG | + | chr5_2:66049617-66049636 | Msa0782740:CDS | 55.0% | |
| ! | AACCCTTAGCACACGGGTTG+AGG | - | chr5_2:66049615-66049634 | None:intergenic | 55.0% |
| ACCCGTGTGCTAAGGGTTAG+TGG | + | chr5_2:66049617-66049636 | Msa0782740:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 66049176 | 66050410 | 66049176 | ID=Msa0782740;Name=Msa0782740 |
| chr5_2 | mRNA | 66049176 | 66050410 | 66049176 | ID=Msa0782740-mRNA-1;Parent=Msa0782740;Name=Msa0782740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=77|1|1|1|1|1|2|179|254 |
| chr5_2 | exon | 66049176 | 66049364 | 66049176 | ID=Msa0782740-mRNA-1:exon:19853;Parent=Msa0782740-mRNA-1 |
| chr5_2 | exon | 66049579 | 66050410 | 66049579 | ID=Msa0782740-mRNA-1:exon:19854;Parent=Msa0782740-mRNA-1 |
| chr5_2 | five_prime_UTR | 66049176 | 66049252 | 66049176 | ID=Msa0782740-mRNA-1:five_prime_utr;Parent=Msa0782740-mRNA-1 |
| chr5_2 | CDS | 66049253 | 66049364 | 66049253 | ID=Msa0782740-mRNA-1:cds;Parent=Msa0782740-mRNA-1 |
| chr5_2 | CDS | 66049579 | 66050231 | 66049579 | ID=Msa0782740-mRNA-1:cds;Parent=Msa0782740-mRNA-1 |
| chr5_2 | three_prime_UTR | 66050232 | 66050410 | 66050232 | ID=Msa0782740-mRNA-1:three_prime_utr;Parent=Msa0782740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
