AlfalfaGEDB | Msa0740170

M. sativa cultivar zhongmu-4 / Msa0740170

KEGG: K09499
GO: GO:0000003 GO:0002199 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005856 GO:0005874 GO:0006457 GO:0006458 GO:0006810 GO:0007338 GO:0007339 GO:0008037 GO:0008150 GO:0009566 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009988 GO:0010035 GO:0010038 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0015630 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0035036 GO:0042221 GO:0042802 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044183 GO:0044297 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045935 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051052 GO:0051054 GO:0051082 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051704 GO:0060255 GO:0060341 GO:0061077 GO:0065007 GO:0065008 GO:0070201 GO:0070202 GO:0070203 GO:0080090 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0101031 GO:1901998 GO:1903827 GO:1903829 GO:1904356 GO:1904358 GO:1904814 GO:1904816 GO:1904851 GO:1904951 GO:2000112 GO:2000278 GO:2000573 GO:2001252
PFAM: PF00118.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0740170	XP_003617067.1	91.326	611	3	2	1	611	1	561	0.0	1107

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0740170	sp\|Q9SF16\|TCPH_ARATH	85.009	587	38	2	1	587	1	537	0.0	976

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0740170	G7K2W1	91.326	611	3	2	1	611	1	561	0.0	1107

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0223300	Msa0740170	0.812329	4.478882e-51	-8.615850e-47
Msa0532050	Msa0740170	0.858440	8.229287e-63	-8.615850e-47
Msa0740170	Msa0820460	0.880315	6.073570e-70	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0740170	MtrunA17_Chr5g0440381	91.326	611	3	2	1	611	1	561	0.0	1107
Msa0740170	MtrunA17_Chr8g0380331	35.540	574	308	10	21	582	17	540	2.27e-103	323
Msa0740170	MtrunA17_Chr7g0241881	33.101	574	313	9	11	576	6	516	2.08e-90	289
Msa0740170	MtrunA17_Chr7g0272821	32.689	569	322	7	11	576	6	516	5.41e-90	288
Msa0740170	MtrunA17_Chr2g0282161	29.442	591	350	6	5	586	1	533	8.92e-84	273
Msa0740170	MtrunA17_Chr3g0123341	29.361	579	343	10	6	576	10	530	1.02e-70	238
Msa0740170	MtrunA17_Chr1g0160221	25.044	571	365	11	11	576	11	523	9.18e-54	192
Msa0740170	MtrunA17_Chr6g0461541	25.044	571	365	11	11	576	8	520	6.78e-52	187
Msa0740170	MtrunA17_Chr7g0214841	25.793	473	313	7	28	482	22	474	1.33e-45	169
Msa0740170	MtrunA17_Chr3g0139481	25.588	340	205	4	243	576	175	472	9.94e-27	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0740170	AT3G11830.1	85.009	587	38	2	1	587	1	537	0.0	976
Msa0740170	AT3G11830.2	84.668	587	38	3	1	587	1	535	0.0	966
Msa0740170	AT3G20050.1	34.083	578	328	8	17	587	13	544	1.74e-103	324
Msa0740170	AT5G20890.1	32.807	570	320	8	11	576	6	516	9.41e-87	280
Msa0740170	AT5G26360.1	29.744	585	356	6	5	586	1	533	1.24e-80	265
Msa0740170	AT3G18190.1	30.576	556	326	8	27	576	32	533	4.24e-77	255
Msa0740170	AT1G24510.1	28.055	581	352	9	6	578	10	532	1.38e-67	229
Msa0740170	AT1G24510.3	26.806	526	320	8	60	578	12	479	4.12e-55	194
Msa0740170	AT3G03960.1	25.260	578	369	10	5	576	6	526	8.34e-55	195
Msa0740170	AT1G24510.2	26.070	514	315	8	72	578	1	456	5.87e-50	180

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Find 173 sgRNAs with CRISPR-Local

Find 539 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTATAGGCGGAGAAA+AGG	0.483886	5_1:+58989133	Msa0740170:CDS
AAAAGAGTTGCTGCTGCAAC+TGG	0.305439	5_1:+58991702	Msa0740170:CDS
AAAATTTAATACGGAGTTAT+AGG	0.246244	5_1:+58988889	Msa0740170:CDS
AAACATGATTGGAATAAAGA+AGG	0.527009	5_1:+58989214	Msa0740170:CDS
AAACTCATCCACGATGATAA+AGG	0.411477	5_1:+58987689	Msa0740170:CDS
AAAGAGTTGCTGCTGCAACT+GGG	0.544621	5_1:+58991703	Msa0740170:CDS
AAAGGAATTCTTTGCATCTA+TGG	0.289996	5_1:+58989151	Msa0740170:CDS
AACACGCGCTTCCTTCTGGT+TGG	0.498660	5_1:+58993260	Msa0740170:CDS
AAGAATTCAACTGTAGTTGC+TGG	0.502547	5_1:+58992142	Msa0740170:CDS
AAGAGTTGCTGCTGCAACTG+GGG	0.532157	5_1:+58991704	Msa0740170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCAATATCAACTAAGATCT+TGG	-	chr5_1:58987780-58987799	None:intergenic	30.0%
TTTCTGCAAAATGATGAGAT+CGG	-	chr5_1:58987852-58987871	None:intergenic	30.0%
ATATTACTCTCTGCTTAGAT+CGG	+	chr5_1:58987914-58987933	Msa0740170:intron	30.0%
CTTATTTCCATAAGTTCTCT+AGG	-	chr5_1:58988164-58988183	None:intergenic	30.0%
TTATTTGTAGCTTATAGCAC+AGG	+	chr5_1:58988310-58988329	Msa0740170:intron	30.0%
AAAACAATGTCACAAAACGT+AGG	+	chr5_1:58988498-58988517	Msa0740170:intron	30.0%
TCAAATAAGCCAATTCAAAC+AGG	+	chr5_1:58988534-58988553	Msa0740170:intron	30.0%
CTTATTTGCATAAGTTCTCT+AGG	-	chr5_1:58988611-58988630	None:intergenic	30.0%
GCTAAAATGAGTGTATCTAT+TGG	-	chr5_1:58988705-58988724	None:intergenic	30.0%
CACTTAGAGCTTAACTAAAT+TGG	-	chr5_1:58988727-58988746	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	58987317	58996266	58987317	ID=Msa0740170;Name=Msa0740170
chr5_1	mRNA	58987317	58996266	58987317	ID=Msa0740170-mRNA-1;Parent=Msa0740170;Name=Msa0740170-mRNA-1;_AED=0.10;_eAED=0.10;_QI=125\|0.84\|0.85\|1\|1\|1\|14\|405\|611
chr5_1	exon	58987317	58987456	58987317	ID=Msa0740170-mRNA-1:exon:16900;Parent=Msa0740170-mRNA-1
chr5_1	exon	58987557	58987817	58987557	ID=Msa0740170-mRNA-1:exon:16901;Parent=Msa0740170-mRNA-1
chr5_1	exon	58988801	58988926	58988801	ID=Msa0740170-mRNA-1:exon:16902;Parent=Msa0740170-mRNA-1
chr5_1	exon	58989032	58989235	58989032	ID=Msa0740170-mRNA-1:exon:16903;Parent=Msa0740170-mRNA-1
chr5_1	exon	58991061	58991263	58991061	ID=Msa0740170-mRNA-1:exon:16904;Parent=Msa0740170-mRNA-1
chr5_1	exon	58991372	58991507	58991372	ID=Msa0740170-mRNA-1:exon:16905;Parent=Msa0740170-mRNA-1
chr5_1	exon	58991648	58991764	58991648	ID=Msa0740170-mRNA-1:exon:16906;Parent=Msa0740170-mRNA-1
chr5_1	exon	58991856	58991975	58991856	ID=Msa0740170-mRNA-1:exon:16907;Parent=Msa0740170-mRNA-1
chr5_1	exon	58992082	58992180	58992082	ID=Msa0740170-mRNA-1:exon:16908;Parent=Msa0740170-mRNA-1
chr5_1	exon	58992275	58992364	58992275	ID=Msa0740170-mRNA-1:exon:16909;Parent=Msa0740170-mRNA-1
chr5_1	exon	58993190	58993394	58993190	ID=Msa0740170-mRNA-1:exon:16910;Parent=Msa0740170-mRNA-1
chr5_1	exon	58994275	58994363	58994275	ID=Msa0740170-mRNA-1:exon:16911;Parent=Msa0740170-mRNA-1
chr5_1	exon	58994446	58994520	58994446	ID=Msa0740170-mRNA-1:exon:16912;Parent=Msa0740170-mRNA-1
chr5_1	exon	58995766	58996266	58995766	ID=Msa0740170-mRNA-1:exon:16913;Parent=Msa0740170-mRNA-1
chr5_1	five_prime_UTR	58987317	58987441	58987317	ID=Msa0740170-mRNA-1:five_prime_utr;Parent=Msa0740170-mRNA-1
chr5_1	CDS	58987442	58987456	58987442	ID=Msa0740170-mRNA-1:cds;Parent=Msa0740170-mRNA-1
chr5_1	CDS	58987557	58987817	58987557	ID=Msa0740170-mRNA-1:cds;Parent=Msa0740170-mRNA-1
chr5_1	CDS	58988801	58988926	58988801	ID=Msa0740170-mRNA-1:cds;Parent=Msa0740170-mRNA-1
chr5_1	CDS	58989032	58989235	58989032	ID=Msa0740170-mRNA-1:cds;Parent=Msa0740170-mRNA-1
chr5_1	CDS	58991061	58991263	58991061	ID=Msa0740170-mRNA-1:cds;Parent=Msa0740170-mRNA-1
chr5_1	CDS	58991372	58991507	58991372	ID=Msa0740170-mRNA-1:cds;Parent=Msa0740170-mRNA-1
chr5_1	CDS	58991648	58991764	58991648	ID=Msa0740170-mRNA-1:cds;Parent=Msa0740170-mRNA-1
chr5_1	CDS	58991856	58991975	58991856	ID=Msa0740170-mRNA-1:cds;Parent=Msa0740170-mRNA-1
chr5_1	CDS	58992082	58992180	58992082	ID=Msa0740170-mRNA-1:cds;Parent=Msa0740170-mRNA-1
chr5_1	CDS	58992275	58992364	58992275	ID=Msa0740170-mRNA-1:cds;Parent=Msa0740170-mRNA-1
chr5_1	CDS	58993190	58993394	58993190	ID=Msa0740170-mRNA-1:cds;Parent=Msa0740170-mRNA-1
chr5_1	CDS	58994275	58994363	58994275	ID=Msa0740170-mRNA-1:cds;Parent=Msa0740170-mRNA-1
chr5_1	CDS	58994446	58994520	58994446	ID=Msa0740170-mRNA-1:cds;Parent=Msa0740170-mRNA-1
chr5_1	CDS	58995766	58995861	58995766	ID=Msa0740170-mRNA-1:cds;Parent=Msa0740170-mRNA-1
chr5_1	three_prime_UTR	58995862	58996266	58995862	ID=Msa0740170-mRNA-1:three_prime_utr;Parent=Msa0740170-mRNA-1

Gene Sequence

>Msa0740170

ATGTCTTCTATGCTGCAACCACAGATCATACTACTGAAAGAAGGTACAGACACATCGCAAGGGAAGCCTCAACTCGTAAGCAACATCAATGCTTGCTGCGCCGTCGCCGACGTCGTTCGAACCACCCTAGGTCCTCGCGGTATGGACAAACTCATCCACGATGATAAAGGTTCTGTCACCATTTCTAACGACGGCGCTACTATCATGAAGCTTCTTGATATCGTTCATCCCGCTGCCAAGATCTTAGTTGATATTGCTAAGTCTCAAGACTCTGAGGTTGGCGATGGAACCACCACTGTGGTATTGCTTGCAGCTGAGTTTTTAAGAGAAGCAAAGCCTTTCATTGAAGATGGTGTTCACTCTCAAAATTTAATACGGAGTTATAGGAATGCATGCTCCTTGGCGATCGAGAAGGTTAAAGAGCTAGCAGTTAGCATTGAGGGAAAAAGTTTGGAAGAGAAGAAAAGTTTGCTTGGAAAGTGTGCTGCTACAACACTTTCTTCAAAACTTATAGGCGGAGAAAAGGAATTCTTTGCATCTATGGTTGTGGACGCTGTAATTGCAATTGGGACTGATGATAGGTTAAACATGATTGGAATAAAGAAGTGCTGTTATAATGATTCAGGTTTTCTTCTACAGGTTCCTGGTGGTAACATGCGCGACTCATTTCTTGTCAATGGTGTTGCCTTCAAGAAGACATTTTCATATGCTGGATTTGAGCAGCAGCCCAAGAAGTTTCTCGATCCAAAAATACTATTACTTAATGTTGAGTTGGAGCTAAAATCTGAGAAAGAAAATGCCGAAATAAGATTATCAGATCCTTCGCAGTATCAATCAATTGTTGATGCAGAATGGAATATTATTTATGACAAATTGGATAAATGTGTCCAAAGTGGTGCCAAAGTTGTTCTCTCACGCCTGGCTATTGGTGATCTGGCAACACAGTATTTTGCCGATAGAGACATTTTCTGTGCTGGTCGTGTAGCAGAAGAAGATCTTAAAAGAGTTGCTGCTGCAACTGGGGGAACTGTGCAAACATCTGTCAATAACATTATTGATGAGGTTCTTGGAACTTGTGAGATTTTTGAGGAAAAGCAAGTAGGAAACGAGAGATTCAACATCTTCAATGGATGTCCATCTGGCCAAACAGCCACCATAGTTCTCCGTGGTGGAGCCGATCAGTTCATAGAGGAAGCAGAGCGAAGTTTGCATGATGCAATCATGATTGTTAGAAGGGCTATGAAGAATTCAACTGTAGTTGCTGGTGGAGGTGCTATAGATATGGAAATAAGCCGGTACCTAAGGCAGCATGCACGCACAATAGCTGGAAAGTCTCAACTTTTCATCAACTCCTATGCAAAAGCTCTTGAGGTTATTCCCCGGCAATTATGTGACAATGCTGGATTTGATGCAACTGATGTGCTGAACAAACTAAGACAGAAACACGCGCTTCCTTCTGGTTGGTTGACCTTCGTTTTATTTGCACAATTGCTTACTTACTACATATACCTGCATTTGGAGAGGCTTAGAAGTAGGGCTGCAATTGAGCCAAGCCCAGTTGAATATAAGATCATTGGTGAGGGTGCTCCATTTGGGGTCGACATAGCCACTGGTGGAATTGCTGATTCATTTGCCAACTTTGTCTGGGAGCCTGCAGTTGTAAAGATCAATGCTATAAATGCTGCTACAGAGGCAGCTTGCCTGGTCTTAAGTGTGGATGAAACAGTTAAAAATCCTAAGTCCGAGAGTGCACAAGGAGAGGCTGCTGCAAGTGCCATGGGAGGCAGAGGTCGCGGAGGTGGTTTCCGTGGCCGTGGACGAGGAATGCGTAGATGA

Protein sequence

>Msa0740170

MSSMLQPQIILLKEGTDTSQGKPQLVSNINACCAVADVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHSQNLIRSYRNACSLAIEKVKELAVSIEGKSLEEKKSLLGKCAATTLSSKLIGGEKEFFASMVVDAVIAIGTDDRLNMIGIKKCCYNDSGFLLQVPGGNMRDSFLVNGVAFKKTFSYAGFEQQPKKFLDPKILLLNVELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLKRVAAATGGTVQTSVNNIIDEVLGTCEIFEEKQVGNERFNIFNGCPSGQTATIVLRGGADQFIEEAERSLHDAIMIVRRAMKNSTVVAGGGAIDMEISRYLRQHARTIAGKSQLFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPSGWLTFVLFAQLLTYYIYLHLERLRSRAAIEPSPVEYKIIGEGAPFGVDIATGGIADSFANFVWEPAVVKINAINAATEAACLVLSVDETVKNPKSESAQGEAAASAMGGRGRGGGFRGRGRGMRR*