Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0223300 | XP_003597400.3 | 88.553 | 795 | 38 | 5 | 1 | 756 | 11 | 791 | 0.0 | 1369 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0223300 | sp|Q43715|TOC75_PEA | 72.792 | 702 | 150 | 2 | 93 | 756 | 111 | 809 | 0.0 | 1092 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0223300 | Q2HS34 | 89.213 | 788 | 39 | 5 | 1 | 756 | 11 | 784 | 0.0 | 1369 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0223090 | Msa0223300 | 0.969658 | 1.900276e-130 | -8.615850e-47 |
Msa0223300 | Msa0223370 | 0.962270 | 1.119476e-120 | -8.615850e-47 |
Msa0223300 | Msa0223950 | 0.812063 | 5.118581e-51 | -8.615850e-47 |
Msa0223300 | Msa0302640 | 0.950057 | 3.605182e-108 | -8.615850e-47 |
Msa0223300 | Msa0339880 | 0.961619 | 6.511989e-120 | -8.615850e-47 |
Msa0223300 | Msa0514370 | 0.803351 | 3.633325e-49 | -8.615850e-47 |
Msa0223300 | Msa0659050 | 0.833055 | 6.644034e-56 | -8.615850e-47 |
Msa0223300 | Msa0740170 | 0.812329 | 4.478882e-51 | -8.615850e-47 |
Msa0223300 | Msa0820460 | 0.833012 | 6.809010e-56 | -8.615850e-47 |
Msa0223300 | Msa0829860 | 0.801619 | 8.264972e-49 | -8.615850e-47 |
Msa0223300 | Msa0879590 | 0.833137 | 6.339561e-56 | -8.615850e-47 |
Msa0223300 | Msa0970610 | 0.809238 | 2.088588e-50 | -8.615850e-47 |
Msa0223300 | Msa1174720 | 0.808325 | 3.273140e-50 | -8.615850e-47 |
Msa0223300 | Msa1215690 | 0.819322 | 1.234228e-52 | -8.615850e-47 |
Msa0223300 | Msa1317280 | 0.825590 | 4.314892e-54 | -8.615850e-47 |
Msa0223300 | Msa1332370 | 0.818652 | 1.752544e-52 | -8.615850e-47 |
Msa0223300 | Msa1333830 | 0.815379 | 9.528101e-52 | -8.615850e-47 |
Msa0223300 | Msa1374700 | 0.839887 | 1.210560e-57 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0223300 | MtrunA17_Chr2g0328601 | 88.553 | 795 | 38 | 5 | 1 | 756 | 11 | 791 | 0.0 | 1369 |
Msa0223300 | MtrunA17_Chr4g0031981 | 73.806 | 691 | 143 | 1 | 104 | 756 | 114 | 804 | 0.0 | 1090 |
Msa0223300 | MtrunA17_Chr5g0400161 | 88.889 | 72 | 8 | 0 | 620 | 691 | 1 | 72 | 2.88e-39 | 139 |
Msa0223300 | MtrunA17_Chr2g0328911 | 24.174 | 484 | 294 | 18 | 294 | 740 | 286 | 733 | 1.35e-20 | 97.1 |
Msa0223300 | MtrunA17_Chr1g0184291 | 31.156 | 199 | 110 | 7 | 551 | 740 | 165 | 345 | 2.31e-13 | 72.4 |
Msa0223300 | MtrunA17_Chr2g0322151 | 30.968 | 155 | 92 | 3 | 591 | 740 | 200 | 344 | 1.23e-12 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0223300 | AT3G46740.1 | 71.449 | 690 | 159 | 1 | 105 | 756 | 129 | 818 | 0.0 | 1060 |
Msa0223300 | AT4G09080.1 | 55.663 | 415 | 125 | 7 | 382 | 756 | 1 | 396 | 1.41e-145 | 432 |
Msa0223300 | AT1G35860.1 | 50.207 | 482 | 147 | 8 | 258 | 731 | 3 | 399 | 1.55e-145 | 432 |
Msa0223300 | AT4G09080.2 | 55.663 | 415 | 125 | 7 | 382 | 756 | 12 | 407 | 2.67e-145 | 432 |
Msa0223300 | AT4G09080.3 | 62.154 | 325 | 82 | 3 | 472 | 756 | 2 | 325 | 1.82e-134 | 401 |
Msa0223300 | AT5G19620.1 | 23.171 | 492 | 299 | 14 | 294 | 744 | 269 | 722 | 2.80e-22 | 102 |
Msa0223300 | AT3G44160.1 | 28.986 | 207 | 122 | 7 | 515 | 712 | 122 | 312 | 2.59e-13 | 72.8 |
Find 252 sgRNAs with CRISPR-Local
Find 409 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACCGTTCATTTGGAGATTA+TGG | 0.115100 | 2_1:-72841695 | Msa0223300:CDS |
CTTCCCTGCTTCAATATTAA+AGG | 0.116562 | 2_1:+72841102 | None:intergenic |
TCCTACCTCCAGCATGTTTC+TGG | 0.139062 | 2_1:+72838432 | None:intergenic |
AATATTATATTATACCTCTT+TGG | 0.227884 | 2_1:+72841423 | None:intergenic |
TGTGCTTCAGTGGTTAATTT+TGG | 0.227908 | 2_1:-72841580 | Msa0223300:CDS |
TTGTAACCCCTTACAGAATA+AGG | 0.240655 | 2_1:+72838475 | None:intergenic |
AGGCATAATTGTTGAAATTA+AGG | 0.242334 | 2_1:-72840999 | Msa0223300:CDS |
GGTGGTGGAGGTTGGTGGTT+TGG | 0.263241 | 2_1:-72842273 | Msa0223300:CDS |
TGAAATGATTTCTATTGTTC+CGG | 0.291518 | 2_1:-72842028 | Msa0223300:CDS |
GGTGCATTATATTTACGTTT+TGG | 0.299305 | 2_1:-72838116 | Msa0223300:CDS |
CTAGGTTGTTGCAGAAGATT+AGG | 0.307809 | 2_1:-72841642 | Msa0223300:CDS |
ATATTATATTATACCTCTTT+GGG | 0.310138 | 2_1:+72841424 | None:intergenic |
CTGATTGTCTTGATATTTGA+TGG | 0.314401 | 2_1:-72837932 | Msa0223300:three_prime_UTR |
GGAGTATGCACATCCATATT+TGG | 0.314750 | 2_1:-72840556 | Msa0223300:CDS |
GGTGGACATGGTGGTGGTGG+TGG | 0.322426 | 2_1:-72842312 | Msa0223300:CDS |
TTCTTTAGTACTTGGAGAAT+TGG | 0.326717 | 2_1:-72837984 | Msa0223300:three_prime_UTR |
TTATCTACACCATCCAAATA+TGG | 0.337762 | 2_1:+72840543 | None:intergenic |
GTGGCAGTGGTGGTGGAGGT+TGG | 0.339631 | 2_1:-72842281 | Msa0223300:CDS |
TTGGTGGCCCTTATTCTGTA+AGG | 0.339722 | 2_1:-72838483 | Msa0223300:CDS |
ATCTCCAAATGAACGGTATT+CGG | 0.343587 | 2_1:+72841700 | None:intergenic |
GAAGAAGTTGCTGGTTGTTA+TGG | 0.346483 | 2_1:+72840717 | None:intergenic |
ACCGTTCATTTGGAGATTAT+GGG | 0.350361 | 2_1:-72841694 | Msa0223300:CDS |
GGTGGAGGTTGGTGGTTTGG+AGG | 0.353180 | 2_1:-72842270 | Msa0223300:CDS |
CCACAGAGTAAATTCACTTA+TGG | 0.360623 | 2_1:-72840283 | Msa0223300:CDS |
TTTGCCGAATACCGTTCATT+TGG | 0.363887 | 2_1:-72841704 | Msa0223300:CDS |
AGTAATGGTGGCAGTGGTGG+TGG | 0.368723 | 2_1:-72842288 | Msa0223300:CDS |
GAGTTACGGATACCTGTTAA+AGG | 0.374913 | 2_1:-72838311 | Msa0223300:CDS |
AACCTCACAAACAACCTCTT+TGG | 0.380682 | 2_1:+72841546 | None:intergenic |
ATGGGTCAAGGTTCATCTTA+TGG | 0.381032 | 2_1:-72838200 | Msa0223300:CDS |
GGAGGAAACGGAGGAGGAGG+AGG | 0.384034 | 2_1:-72842249 | Msa0223300:CDS |
GCAGAGCATGGGAATGATCT+AGG | 0.384359 | 2_1:-72838269 | Msa0223300:CDS |
GGAGGAGGAAACGGAGGAGG+AGG | 0.387801 | 2_1:-72842252 | Msa0223300:CDS |
GTTGCAGAAGATTAGGGATA+AGG | 0.390963 | 2_1:-72841635 | Msa0223300:CDS |
GGTAATCAAATTTGTGCAAA+TGG | 0.394320 | 2_1:-72840226 | Msa0223300:CDS |
GTCAGGAGAGGGAGTATAAG+AGG | 0.396728 | 2_1:-72841753 | Msa0223300:CDS |
TTTGAAAAGGTTGATCTTGA+AGG | 0.399772 | 2_1:-72841943 | Msa0223300:CDS |
TTTCATATAGTGAGAGTACT+TGG | 0.399955 | 2_1:-72841885 | Msa0223300:CDS |
AAGAAAGGAGTTTGAGTGCT+AGG | 0.400808 | 2_1:-72841660 | Msa0223300:CDS |
TACACATGCATGCCTTTAAC+AGG | 0.406430 | 2_1:+72838299 | None:intergenic |
GCAGTGGTGGTGGAGGTTGG+TGG | 0.409155 | 2_1:-72842278 | Msa0223300:CDS |
ATTCACTTATGGACTTGTAA+TGG | 0.409835 | 2_1:-72840272 | Msa0223300:CDS |
TGGTGGTTTGGAGGAGGAAA+CGG | 0.413877 | 2_1:-72842261 | Msa0223300:CDS |
GAAATGATTTCTATTGTTCC+GGG | 0.419998 | 2_1:-72842027 | Msa0223300:CDS |
AGTTGGTGGCGATTGAAGAA+TGG | 0.421149 | 2_1:+72838637 | None:intergenic |
GGTGGTGGACATGGTGGTGG+TGG | 0.421380 | 2_1:-72842315 | Msa0223300:CDS |
TCACTAGTCTCATCAGGCCT+TGG | 0.424601 | 2_1:+72841025 | None:intergenic |
GGCGATTGAAGAATGGGAAC+TGG | 0.425859 | 2_1:+72838644 | None:intergenic |
AACACCTTTAATATTGAAGC+AGG | 0.427152 | 2_1:-72841106 | Msa0223300:CDS |
ACTGGTGGTGGACATGGTGG+TGG | 0.430184 | 2_1:-72842318 | Msa0223300:CDS |
CTTCCTCCACAGACATCAAC+TGG | 0.431035 | 2_1:+72838596 | None:intergenic |
GACGGCAATGGCAGCGGCGG+AGG | 0.431131 | 2_1:+72842377 | None:intergenic |
GGAAGTAATGGTGGCAGTGG+TGG | 0.431759 | 2_1:-72842291 | Msa0223300:CDS |
TGGTGGCCCTTATTCTGTAA+GGG | 0.436401 | 2_1:-72838482 | Msa0223300:CDS |
CACAGCTTGCAGCTGAGTTA+CGG | 0.437484 | 2_1:-72838325 | Msa0223300:intron |
GGCGCAACTACAGAAGGAAT+TGG | 0.439427 | 2_1:-72841989 | Msa0223300:CDS |
AATGGCAGCGGCGGAGGAAA+CGG | 0.440792 | 2_1:+72842383 | None:intergenic |
ATTGGATTAACAGCTGCGTC+CGG | 0.441537 | 2_1:-72841131 | Msa0223300:intron |
CCTACCAGCCTCGGTGGTAC+TGG | 0.441855 | 2_1:-72840160 | Msa0223300:CDS |
AATTGAATAGTTATATTGAC+AGG | 0.454818 | 2_1:+72842147 | None:intergenic |
CAAGGTTCATCTTATGGTGT+TGG | 0.455140 | 2_1:-72838194 | Msa0223300:CDS |
CCTCCCTCACTAGTCTCATC+AGG | 0.456399 | 2_1:+72841019 | None:intergenic |
AACGGCGACGGTGGCGGTGA+GGG | 0.457185 | 2_1:+72842401 | None:intergenic |
GGAGGTTGGTGGTTTGGAGG+AGG | 0.457441 | 2_1:-72842267 | Msa0223300:CDS |
GGTGGTGGTGGTGGAAGTAA+TGG | 0.462440 | 2_1:-72842303 | Msa0223300:CDS |
GTTGGTGGCGATTGAAGAAT+GGG | 0.462764 | 2_1:+72838638 | None:intergenic |
TGTTGGTGCCAAGCTTGGTT+TGG | 0.462992 | 2_1:-72838177 | Msa0223300:CDS |
TGCTCTGACCAAACCAAGCT+TGG | 0.463681 | 2_1:+72838169 | None:intergenic |
GTTCAGTTCATTGATAAGCT+TGG | 0.463790 | 2_1:-72841496 | Msa0223300:CDS |
CTTGTCCTCCATGGCCGCTA+TGG | 0.467464 | 2_1:-72838547 | Msa0223300:CDS |
CTGAGGGTTGAAGAAGTTGC+TGG | 0.470561 | 2_1:+72840708 | None:intergenic |
TTTGGAGGAGGAAACGGAGG+AGG | 0.471711 | 2_1:-72842255 | Msa0223300:CDS |
GTGTTGCCGTAGAGGAAAAC+GGG | 0.473372 | 2_1:+72842342 | None:intergenic |
TTTGAAGACACGGCGGCGAC+GGG | 0.474675 | 2_1:+72842425 | None:intergenic |
GGATGATCTTGCATTTAAGA+TGG | 0.475394 | 2_1:-72840577 | Msa0223300:CDS |
CGGCCATGGAGGACAAGAAC+TGG | 0.475573 | 2_1:+72838553 | None:intergenic |
CAGAAGTGGTATCATGATCA+AGG | 0.480113 | 2_1:-72841610 | Msa0223300:CDS |
TTTGCGACGGCCGGACAAGA+TGG | 0.480747 | 2_1:+72842497 | None:intergenic |
GTTGATCATAACTCAGGAAC+TGG | 0.481477 | 2_1:-72838137 | Msa0223300:CDS |
TATGGTGTTGGTGCCAAGCT+TGG | 0.481755 | 2_1:-72838182 | Msa0223300:CDS |
GGTTACAACATGGGTGAACT+TGG | 0.484076 | 2_1:-72838460 | Msa0223300:CDS |
GGAGGAAACGGCGACGGTGG+CGG | 0.484981 | 2_1:+72842395 | None:intergenic |
TAGGTTGTTGCAGAAGATTA+GGG | 0.486333 | 2_1:-72841641 | Msa0223300:CDS |
ACATGAAGAGTTCGGTTTCG+TGG | 0.486346 | 2_1:+72840519 | None:intergenic |
TGAAATTAAGGTAAAAGAGA+TGG | 0.486682 | 2_1:-72840987 | Msa0223300:CDS |
GGAAGCTCTCTATGTATCAC+AGG | 0.487037 | 2_1:+72841445 | None:intergenic |
CACAACCACCATAGCGGCCA+TGG | 0.488369 | 2_1:+72838539 | None:intergenic |
GGTGGAAGTAATGGTGGCAG+TGG | 0.488956 | 2_1:-72842294 | Msa0223300:CDS |
GTTCAGGCCTCACTTCAACC+TGG | 0.489926 | 2_1:-72840799 | Msa0223300:intron |
GGTGTTGCCGTAGAGGAAAA+CGG | 0.489984 | 2_1:+72842341 | None:intergenic |
GGTGAAACAGTATTTGAGTC+AGG | 0.490823 | 2_1:-72841770 | Msa0223300:CDS |
TCTGAAGAATTTGATTCTCA+TGG | 0.491097 | 2_1:-72842174 | Msa0223300:CDS |
ACGGCGACGGTGGCGGTGAG+GGG | 0.492240 | 2_1:+72842402 | None:intergenic |
TTGGATAGTTTGACATCTAG+TGG | 0.493950 | 2_1:-72841970 | Msa0223300:CDS |
GTTGGATACCCTCCACGTCC+AGG | 0.494002 | 2_1:+72840923 | None:intergenic |
GTTTGAAGACACGGCGGCGA+CGG | 0.494402 | 2_1:+72842424 | None:intergenic |
TGGATTCTGCAATGATCCCT+TGG | 0.494510 | 2_1:+72837895 | None:intergenic |
TTTGTGAATGGAGCTGTAGT+TGG | 0.494735 | 2_1:-72840085 | Msa0223300:CDS |
ATTCGCCTATAGACTTCTGT+AGG | 0.494760 | 2_1:+72838221 | None:intergenic |
CCGCCAGTTCTTGTCCTCCA+TGG | 0.495151 | 2_1:-72838556 | Msa0223300:CDS |
TACGGCAACACCACTGGTGG+TGG | 0.496015 | 2_1:-72842330 | Msa0223300:CDS |
GAGAGCAGTTGATGCATTGA+GGG | 0.496333 | 2_1:+72842454 | None:intergenic |
GAGGGAGTATAAGAGGAGGA+TGG | 0.496741 | 2_1:-72841746 | Msa0223300:CDS |
GGAACCCTACAGAAGTCTAT+AGG | 0.496842 | 2_1:-72838226 | Msa0223300:CDS |
TTCCTCTACGGCAACACCAC+TGG | 0.497773 | 2_1:-72842336 | Msa0223300:CDS |
TTCTGTAAGGGGTTACAACA+TGG | 0.498736 | 2_1:-72838470 | Msa0223300:CDS |
AACAGCTTACATGAAGAGTT+CGG | 0.499486 | 2_1:+72840511 | None:intergenic |
TGAGAGCAGTTGATGCATTG+AGG | 0.500721 | 2_1:+72842453 | None:intergenic |
GTTAAAGGCATGCATGTGTA+TGG | 0.502109 | 2_1:-72838296 | Msa0223300:CDS |
TGTAACCCCTTACAGAATAA+GGG | 0.504000 | 2_1:+72838476 | None:intergenic |
TTCGGCGGCACCATCTTGTC+CGG | 0.504504 | 2_1:-72842507 | Msa0223300:CDS |
AAGTTTCGTTGTATTAATGT+TGG | 0.504797 | 2_1:-72841850 | Msa0223300:CDS |
TGGGTATGATGAGGAAAGAA+AGG | 0.507440 | 2_1:-72841675 | Msa0223300:CDS |
ATATCAGAATCCAACTCAAT+CGG | 0.509396 | 2_1:+72841808 | None:intergenic |
CGATGGAACTGTTGGAATCA+CGG | 0.511659 | 2_1:-72841908 | Msa0223300:CDS |
GATGGTGCCGCCGAAGTTGT+TGG | 0.515685 | 2_1:+72842515 | None:intergenic |
AACACCACTGGTGGTGGACA+TGG | 0.516543 | 2_1:-72842324 | Msa0223300:CDS |
AATGGTGGCAGTGGTGGTGG+AGG | 0.516851 | 2_1:-72842285 | Msa0223300:CDS |
TTGAAAAGGTTGATCTTGAA+GGG | 0.520120 | 2_1:-72841942 | Msa0223300:CDS |
TGGAGCGAGAAATATGTTCC+AGG | 0.520832 | 2_1:-72840065 | Msa0223300:intron |
CAGAAGTACAATACCAGAGT+TGG | 0.521701 | 2_1:+72840905 | None:intergenic |
TGCAAACTGCAGGTAGATCA+AGG | 0.522633 | 2_1:-72838682 | Msa0223300:intron |
ACAAATGCCGATGGAACTGT+TGG | 0.524279 | 2_1:-72841916 | Msa0223300:CDS |
GGTGGTGGTGGAAGTAATGG+TGG | 0.524691 | 2_1:-72842300 | Msa0223300:CDS |
ACAGAAGTCTATAGGCGAAT+GGG | 0.524829 | 2_1:-72838218 | Msa0223300:CDS |
CGGCTGATGTCAGTACTGAA+TGG | 0.529553 | 2_1:-72840955 | Msa0223300:CDS |
CGGTGAGGGGTTTGAAGACA+CGG | 0.531059 | 2_1:+72842415 | None:intergenic |
AACGGGTTTGTTAGAGTGGA+CGG | 0.532988 | 2_1:+72842359 | None:intergenic |
GTAGATCAAGGCCTAGGCAT+TGG | 0.533049 | 2_1:-72838670 | Msa0223300:CDS |
GGTGGCCCTTATTCTGTAAG+GGG | 0.535538 | 2_1:-72838481 | Msa0223300:CDS |
GTTGTTTGTGAGGTTGTTGA+AGG | 0.535781 | 2_1:-72841538 | Msa0223300:CDS |
CTCGTTCCATCCAACAACTT+CGG | 0.537018 | 2_1:-72842525 | Msa0223300:CDS |
AATGCCAGTACCACCGAGGC+TGG | 0.537268 | 2_1:+72840156 | None:intergenic |
GGAAGTTCAAAGGATGTCAA+AGG | 0.537541 | 2_1:-72838248 | Msa0223300:CDS |
AGAGTGGACGGCAATGGCAG+CGG | 0.537605 | 2_1:+72842371 | None:intergenic |
GTCTATAGGCGAATGGGTCA+AGG | 0.538287 | 2_1:-72838212 | Msa0223300:CDS |
GTATAAGAGGAGGATGGAGA+AGG | 0.538995 | 2_1:-72841740 | Msa0223300:CDS |
AGAGTAAAAGCATCATAACT+TGG | 0.539501 | 2_1:+72838505 | None:intergenic |
GCAGACAAAGCCGATTGAGT+TGG | 0.539592 | 2_1:-72841818 | Msa0223300:CDS |
TACCAAAGAGGTTGTTTGTG+AGG | 0.542702 | 2_1:-72841548 | Msa0223300:CDS |
CACCAGTGGTGTTGCCGTAG+AGG | 0.545329 | 2_1:+72842334 | None:intergenic |
TTGGATTAACAGCTGCGTCC+GGG | 0.545816 | 2_1:-72841130 | Msa0223300:intron |
AGGGTATGCTTGTGCTTCAG+TGG | 0.546401 | 2_1:-72841590 | Msa0223300:CDS |
GGAAAACGGGTTTGTTAGAG+TGG | 0.546885 | 2_1:+72842355 | None:intergenic |
TGGTGCTGCCAGAAACATGC+TGG | 0.547041 | 2_1:-72838440 | Msa0223300:CDS |
TACAGAAGTCTATAGGCGAA+TGG | 0.548050 | 2_1:-72838219 | Msa0223300:CDS |
CCAGTACCACCGAGGCTGGT+AGG | 0.550717 | 2_1:+72840160 | None:intergenic |
CTGATATGACTGAGAAGGAG+AGG | 0.551839 | 2_1:-72841792 | Msa0223300:CDS |
ATCTAGTGGAATGTTTGAAA+AGG | 0.552613 | 2_1:-72841956 | Msa0223300:CDS |
GTCCTCCATGGCCGCTATGG+TGG | 0.553018 | 2_1:-72838544 | Msa0223300:CDS |
AGAGGAGGATGGAGAAGGCT+AGG | 0.553607 | 2_1:-72841735 | Msa0223300:CDS |
GGCGGAGGAAACGGCGACGG+TGG | 0.554681 | 2_1:+72842392 | None:intergenic |
GAAGTTCAAAGGATGTCAAA+GGG | 0.555525 | 2_1:-72838247 | Msa0223300:CDS |
GATGGACCTCCTACCAGCCT+CGG | 0.558209 | 2_1:-72840169 | Msa0223300:CDS |
CTGCAGGTAGATCAAGGCCT+AGG | 0.558852 | 2_1:-72838676 | Msa0223300:intron |
ACGTGGAGGGTATCCAACTC+TGG | 0.559551 | 2_1:-72840918 | Msa0223300:intron |
TGGAAATCTTAATACCAAAG+AGG | 0.562046 | 2_1:-72841560 | Msa0223300:CDS |
TTTGTTAGAGTGGACGGCAA+TGG | 0.562349 | 2_1:+72842365 | None:intergenic |
GTTGATGCATTGAGGGAGAG+AGG | 0.563859 | 2_1:+72842461 | None:intergenic |
TTGATGCATTGAGGGAGAGA+GGG | 0.564365 | 2_1:+72842462 | None:intergenic |
GCCCTTGTGTAAACTCCGCC+CGG | 0.565154 | 2_1:+72842009 | None:intergenic |
AAGCTTGGCAATGTTGTTGA+AGG | 0.565864 | 2_1:-72841481 | Msa0223300:CDS |
GGAACTGGGTGCCAATGCCT+AGG | 0.567234 | 2_1:+72838659 | None:intergenic |
CATGGAGGACAAGAACTGGC+GGG | 0.567265 | 2_1:+72838557 | None:intergenic |
GTTTATCCAGTTGATGTCTG+TGG | 0.574004 | 2_1:-72838602 | Msa0223300:CDS |
CACAAGGGCGCAACTACAGA+AGG | 0.574798 | 2_1:-72841995 | Msa0223300:CDS |
TCATCAGCAATAGCTGCTGC+CGG | 0.576186 | 2_1:+72842204 | None:intergenic |
TTCCGGGCGGAGTTTACACA+AGG | 0.577272 | 2_1:-72842011 | Msa0223300:CDS |
AAGACACGGCGGCGACGGGA+AGG | 0.577840 | 2_1:+72842429 | None:intergenic |
GGACTGAATAGAGCTCTTAG+TGG | 0.577947 | 2_1:-72840742 | Msa0223300:CDS |
AGCGGCGGAGGAAACGGCGA+CGG | 0.578205 | 2_1:+72842389 | None:intergenic |
CAGCAACTTCTTCAACCCTC+AGG | 0.579110 | 2_1:-72840707 | Msa0223300:intron |
GGATGGAACGAGAGAAGACA+TGG | 0.579164 | 2_1:+72842536 | None:intergenic |
AGGAGAGGGAGTATAAGAGG+AGG | 0.581109 | 2_1:-72841750 | Msa0223300:CDS |
TTTGAGCATCGGAATCTGCA+AGG | 0.581527 | 2_1:-72840763 | Msa0223300:CDS |
ACGGTATTCGGCAAAATACA+CGG | 0.581738 | 2_1:+72841712 | None:intergenic |
CGTGATTCCAACAGTTCCAT+CGG | 0.582065 | 2_1:+72841909 | None:intergenic |
AACAGTATTTGAGTCAGGAG+AGG | 0.582697 | 2_1:-72841765 | Msa0223300:CDS |
CGAATATTGAGGTTAATCCA+AGG | 0.584035 | 2_1:-72841042 | Msa0223300:CDS |
TTGGATACCCTCCACGTCCA+GGG | 0.585173 | 2_1:+72840924 | None:intergenic |
ACTGAATGGAGTATTATCCC+TGG | 0.586150 | 2_1:-72840941 | Msa0223300:CDS |
CAGTTGATGTCTGTGGAGGA+AGG | 0.588557 | 2_1:-72838595 | Msa0223300:CDS |
ACATAGAGAGCTTCCCAAAG+AGG | 0.590094 | 2_1:-72841437 | Msa0223300:intron |
TGGTTTGGAGGAGGAAACGG+AGG | 0.591098 | 2_1:-72842258 | Msa0223300:CDS |
CTCTACGGCAACACCACTGG+TGG | 0.591852 | 2_1:-72842333 | Msa0223300:CDS |
ATGTCTGTGGAGGAAGGAGC+TGG | 0.592623 | 2_1:-72838589 | Msa0223300:CDS |
AAACGGCGACGGTGGCGGTG+AGG | 0.592870 | 2_1:+72842400 | None:intergenic |
TTCATATAGTGAGAGTACTT+GGG | 0.593668 | 2_1:-72841884 | Msa0223300:CDS |
TGGAGTATTATCCCTGGACG+TGG | 0.594319 | 2_1:-72840935 | Msa0223300:CDS |
ACCCATAATCTCCAAATGAA+CGG | 0.594361 | 2_1:+72841693 | None:intergenic |
GGGATCATTGCAGAATCCAC+AGG | 0.594493 | 2_1:-72837891 | Msa0223300:three_prime_UTR |
GTGGACGGCAATGGCAGCGG+CGG | 0.594818 | 2_1:+72842374 | None:intergenic |
GGATTCTGATATGACTGAGA+AGG | 0.595424 | 2_1:-72841797 | Msa0223300:CDS |
GCGATTGAAGAATGGGAACT+GGG | 0.595882 | 2_1:+72838645 | None:intergenic |
GGCCGCTATGGTGGTTGTGT+AGG | 0.596201 | 2_1:-72838535 | Msa0223300:CDS |
TCTGTAAGGGGTTACAACAT+GGG | 0.597256 | 2_1:-72838469 | Msa0223300:CDS |
TGGAGGACAAGAACTGGCGG+GGG | 0.598639 | 2_1:+72838559 | None:intergenic |
ACCGTGTCAGAGTTAGTTGG+TGG | 0.599851 | 2_1:+72838623 | None:intergenic |
GGTGGTGGAATTAGTGCAGA+TGG | 0.600249 | 2_1:-72840187 | Msa0223300:CDS |
TATGGTGTCAGTTGTTCCTG+TGG | 0.600323 | 2_1:+72837875 | None:intergenic |
TGGTACTGGCATTGATCACA+TGG | 0.604743 | 2_1:-72840146 | Msa0223300:CDS |
TATGCACATCCATATTTGGA+TGG | 0.605774 | 2_1:-72840552 | Msa0223300:CDS |
ACAGTATTTGAGTCAGGAGA+GGG | 0.607068 | 2_1:-72841764 | Msa0223300:CDS |
CAAAGAGTACTACCTGGTGG+TGG | 0.609512 | 2_1:-72840202 | Msa0223300:CDS |
GTGCCGCCGAAGTTGTTGGA+TGG | 0.609553 | 2_1:+72842519 | None:intergenic |
TAAACCGTGTCAGAGTTAGT+TGG | 0.610131 | 2_1:+72838620 | None:intergenic |
TTCGCCTATAGACTTCTGTA+GGG | 0.610421 | 2_1:+72838222 | None:intergenic |
AACTCAATCGGCTTTGTCTG+CGG | 0.610651 | 2_1:+72841820 | None:intergenic |
GTACCACCGAGGCTGGTAGG+AGG | 0.612805 | 2_1:+72840163 | None:intergenic |
TGGAGATTATGGGTATGATG+AGG | 0.614636 | 2_1:-72841684 | Msa0223300:CDS |
ATGGAGGACAAGAACTGGCG+GGG | 0.616107 | 2_1:+72838558 | None:intergenic |
GTATTATCCCTGGACGTGGA+GGG | 0.616682 | 2_1:-72840931 | Msa0223300:CDS |
ACCACCATGTCCACCACCAG+TGG | 0.617417 | 2_1:+72842320 | None:intergenic |
ACCACTGGTGGTGGACATGG+TGG | 0.617692 | 2_1:-72842321 | Msa0223300:CDS |
AAAAGAGATGGATCAGAAGA+CGG | 0.620917 | 2_1:-72840975 | Msa0223300:CDS |
AGTATTATCCCTGGACGTGG+AGG | 0.623139 | 2_1:-72840932 | Msa0223300:CDS |
CCATGGAGGACAAGAACTGG+CGG | 0.627462 | 2_1:+72838556 | None:intergenic |
CTACTAGTCTAGTATTAGCA+CGG | 0.628634 | 2_1:+72838014 | None:intergenic |
GAATGATCTAGGAAGTTCAA+AGG | 0.628689 | 2_1:-72838258 | Msa0223300:CDS |
AGAAGTGGTATCATGATCAA+GGG | 0.628769 | 2_1:-72841609 | Msa0223300:CDS |
TATCCAGTTGATGTCTGTGG+AGG | 0.628813 | 2_1:-72838599 | Msa0223300:CDS |
AGGCCTGATGAGACTAGTGA+GGG | 0.628874 | 2_1:-72841022 | Msa0223300:CDS |
GAAGGGAAGACAAATGCCGA+TGG | 0.629741 | 2_1:-72841925 | Msa0223300:CDS |
TATGCCGTTGATCATAACTC+AGG | 0.630071 | 2_1:-72838143 | Msa0223300:CDS |
GAAGCTCTCTATGTATCACA+GGG | 0.631275 | 2_1:+72841446 | None:intergenic |
TGATATGACTGAGAAGGAGA+GGG | 0.631555 | 2_1:-72841791 | Msa0223300:CDS |
TTAGGGATAAGGTTCAGAAG+TGG | 0.635116 | 2_1:-72841624 | Msa0223300:CDS |
GAGATAACAACTCGTGACGA+AGG | 0.635863 | 2_1:-72840247 | Msa0223300:CDS |
CAGGCCTCACTTCAACCTGG+TGG | 0.639154 | 2_1:-72840796 | Msa0223300:CDS |
TCAATATTAAAGGTGTTACC+CGG | 0.639699 | 2_1:+72841112 | None:intergenic |
ACACCTTTAATATTGAAGCA+GGG | 0.649166 | 2_1:-72841105 | Msa0223300:CDS |
ATATAGTGAGAGTACTTGGG+AGG | 0.649290 | 2_1:-72841881 | Msa0223300:CDS |
AGTTCCTGAGTTATGATCAA+CGG | 0.653436 | 2_1:+72838139 | None:intergenic |
TCAAAAGAAATAGTTCCACC+AGG | 0.657409 | 2_1:+72840781 | None:intergenic |
AAGGCCTGATGAGACTAGTG+AGG | 0.658789 | 2_1:-72841023 | Msa0223300:CDS |
CCTGATGAGACTAGTGAGGG+AGG | 0.666702 | 2_1:-72841019 | Msa0223300:CDS |
ATTCAATTGAACAAACTCAG+TGG | 0.672368 | 2_1:-72842132 | Msa0223300:CDS |
GTTCCATCCAACAACTTCGG+CGG | 0.677116 | 2_1:-72842522 | Msa0223300:CDS |
AGTTCCACCAGGTTGAAGTG+AGG | 0.678160 | 2_1:+72840792 | None:intergenic |
GCCACCAACTAACTCTGACA+CGG | 0.681112 | 2_1:-72838624 | Msa0223300:CDS |
AATGGTCAAAGAGTACTACC+TGG | 0.681459 | 2_1:-72840208 | Msa0223300:CDS |
TCCGGGCGGAGTTTACACAA+GGG | 0.682002 | 2_1:-72842010 | Msa0223300:CDS |
CGCCTACACAACCACCATAG+CGG | 0.696532 | 2_1:+72838533 | None:intergenic |
AACCACCATAGCGGCCATGG+AGG | 0.698443 | 2_1:+72838542 | None:intergenic |
TCTGCACTAATTCCACCACC+AGG | 0.699846 | 2_1:+72840190 | None:intergenic |
GGACCTCCTACCAGCCTCGG+TGG | 0.704909 | 2_1:-72840166 | Msa0223300:CDS |
ATGATTTCTATTGTTCCGGG+CGG | 0.716023 | 2_1:-72842024 | Msa0223300:CDS |
CCATAAGTGAATTTACTCTG+TGG | 0.720329 | 2_1:+72840283 | None:intergenic |
GGTCAAAGAGTACTACCTGG+TGG | 0.755451 | 2_1:-72840205 | Msa0223300:CDS |
TGCTGCCAGAAACATGCTGG+AGG | 0.768164 | 2_1:-72838437 | Msa0223300:intron |
GATCAATGCCAGTACCACCG+AGG | 0.774073 | 2_1:+72840152 | None:intergenic |
TGAGGGGTTTGAAGACACGG+CGG | 0.801528 | 2_1:+72842418 | None:intergenic |
AAGCTCTCTATGTATCACAG+GGG | 0.819683 | 2_1:+72841447 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAAAAAATATATTTTTAA+AGG | - | chr2_1:72841609-72841628 | Msa0223300:CDS | 0.0% |
!!! | TTTATATAAAATCAATTTTG+TGG | + | chr2_1:72841582-72841601 | None:intergenic | 10.0% |
!!! | GTTTTTAAATTACATTTTTT+TGG | - | chr2_1:72842390-72842409 | Msa0223300:CDS | 10.0% |
!! | ATATTATATTATACCTCTTT+GGG | + | chr2_1:72839018-72839037 | None:intergenic | 15.0% |
!! | AATATTATATTATACCTCTT+TGG | + | chr2_1:72839019-72839038 | None:intergenic | 15.0% |
!! | TTGTTATCTGTTATATATAT+GGG | - | chr2_1:72839069-72839088 | Msa0223300:intron | 15.0% |
!!! | AATAATTGATATTTCTAGTA+TGG | - | chr2_1:72839152-72839171 | Msa0223300:intron | 15.0% |
!!! | TATTTTTACATGAACTATTT+AGG | - | chr2_1:72840075-72840094 | Msa0223300:CDS | 15.0% |
!! | ATTGAAATGAAAAACATTTA+GGG | + | chr2_1:72840715-72840734 | None:intergenic | 15.0% |
!! | TAAATTCTAACAAAAGTAAT+AGG | + | chr2_1:72841209-72841228 | None:intergenic | 15.0% |
!!! | TAACCAAATTAATTTTTTAG+AGG | + | chr2_1:72841458-72841477 | None:intergenic | 15.0% |
!! | AACATAATTGATTACTAAAA+AGG | - | chr2_1:72841518-72841537 | Msa0223300:CDS | 15.0% |
!!! | CTAAAACAAAATTTTTAATG+TGG | + | chr2_1:72841635-72841654 | None:intergenic | 15.0% |
!!! | CACATTAAAAATTTTGTTTT+AGG | - | chr2_1:72841633-72841652 | Msa0223300:CDS | 15.0% |
!! | AATTGAATAGTTATATTGAC+AGG | + | chr2_1:72838295-72838314 | None:intergenic | 20.0% |
!! | GTTGTTATCTGTTATATATA+TGG | - | chr2_1:72839068-72839087 | Msa0223300:intron | 20.0% |
!!! | TGTTTTATCAATATTGATAC+TGG | - | chr2_1:72839808-72839827 | Msa0223300:intron | 20.0% |
!! | CATGTAAGCAAATAATAAAA+AGG | + | chr2_1:72840456-72840475 | None:intergenic | 20.0% |
!!! | CTTTTTATTATTTGCTTACA+TGG | - | chr2_1:72840454-72840473 | Msa0223300:intron | 20.0% |
!! | AAGGCTTAAAGATAATAAAA+AGG | + | chr2_1:72840490-72840509 | None:intergenic | 20.0% |
!! | ATACAATTATAAGAGGAAAA+AGG | + | chr2_1:72840509-72840528 | None:intergenic | 20.0% |
!!! | TTTTCCTCTTATAATTGTAT+TGG | - | chr2_1:72840509-72840528 | Msa0223300:intron | 20.0% |
!! | TTTACCAATACAATTATAAG+AGG | + | chr2_1:72840516-72840535 | None:intergenic | 20.0% |
!! | ACACAATTAGAAAATATACA+AGG | + | chr2_1:72840642-72840661 | None:intergenic | 20.0% |
!! | GATTGAAATGAAAAACATTT+AGG | + | chr2_1:72840716-72840735 | None:intergenic | 20.0% |
!!! | TTTTTTCACACATAATTTTG+AGG | + | chr2_1:72841432-72841451 | None:intergenic | 20.0% |
!! | CAAAATTATGTGTGAAAAAA+AGG | - | chr2_1:72841432-72841451 | Msa0223300:intron | 20.0% |
!!! | TTACATTTTTTTGGTTTAAG+TGG | - | chr2_1:72842399-72842418 | Msa0223300:CDS | 20.0% |
!!! | TACATTTTTTTGGTTTAAGT+GGG | - | chr2_1:72842400-72842419 | Msa0223300:CDS | 20.0% |
! | TGAAATGATTTCTATTGTTC+CGG | - | chr2_1:72838411-72838430 | Msa0223300:intron | 25.0% |
! | AAGTTTCGTTGTATTAATGT+TGG | - | chr2_1:72838589-72838608 | Msa0223300:CDS | 25.0% |
! | TTATCTGTTATATATATGGG+AGG | - | chr2_1:72839072-72839091 | Msa0223300:intron | 25.0% |
! | TCTTATTGTTGTCAATTTAG+AGG | - | chr2_1:72839105-72839124 | Msa0223300:intron | 25.0% |
! | CTTATTGTTGTCAATTTAGA+GGG | - | chr2_1:72839106-72839125 | Msa0223300:intron | 25.0% |
! | AGGCAAATAATCATTGAAAT+TGG | + | chr2_1:72839188-72839207 | None:intergenic | 25.0% |
!!! | TTCTTTGTTTTCGAATATTG+AGG | - | chr2_1:72839386-72839405 | Msa0223300:intron | 25.0% |
! | AGGCATAATTGTTGAAATTA+AGG | - | chr2_1:72839440-72839459 | Msa0223300:intron | 25.0% |
! | TGAAATTAAGGTAAAAGAGA+TGG | - | chr2_1:72839452-72839471 | Msa0223300:intron | 25.0% |
!!! | ATTGCTTTTCAATTTTGTTC+AGG | - | chr2_1:72839624-72839643 | Msa0223300:intron | 25.0% |
! | GGATATATAAGACTGAATAT+TGG | + | chr2_1:72840621-72840640 | None:intergenic | 25.0% |
! | AGAAAAAAATAGTCCATCAA+CGG | + | chr2_1:72840772-72840791 | None:intergenic | 25.0% |
!! | CAACTTTTATATTGATCCAA+AGG | + | chr2_1:72840884-72840903 | None:intergenic | 25.0% |
! | CTTTGGATCAATATAAAAGT+TGG | - | chr2_1:72840882-72840901 | Msa0223300:intron | 25.0% |
!!! | ATTTTGATCATTACAGCAAA+AGG | + | chr2_1:72841033-72841052 | None:intergenic | 25.0% |
!! | AGGCCTCTAAAAAATTAATT+TGG | - | chr2_1:72841452-72841471 | Msa0223300:CDS | 25.0% |
! | GTCTTAAATAGAAAACATCA+GGG | + | chr2_1:72841680-72841699 | None:intergenic | 25.0% |
! | AGTCTTAAATAGAAAACATC+AGG | + | chr2_1:72841681-72841700 | None:intergenic | 25.0% |
!! | TTTTTATATATGCAAACTGC+AGG | - | chr2_1:72841747-72841766 | Msa0223300:CDS | 25.0% |
! | TGATAAAGAATCATAAAACG+AGG | + | chr2_1:72842041-72842060 | None:intergenic | 25.0% |
TCTGAAGAATTTGATTCTCA+TGG | - | chr2_1:72838265-72838284 | Msa0223300:CDS | 30.0% | |
ATTCAATTGAACAAACTCAG+TGG | - | chr2_1:72838307-72838326 | Msa0223300:CDS | 30.0% | |
AAGAAGCGAAAAACAAAAGT+TGG | - | chr2_1:72838370-72838389 | Msa0223300:intron | 30.0% | |
GAAATGATTTCTATTGTTCC+GGG | - | chr2_1:72838412-72838431 | Msa0223300:intron | 30.0% | |
ATCTAGTGGAATGTTTGAAA+AGG | - | chr2_1:72838483-72838502 | Msa0223300:CDS | 30.0% | |
! | TTTGAAAAGGTTGATCTTGA+AGG | - | chr2_1:72838496-72838515 | Msa0223300:CDS | 30.0% |
! | TTGAAAAGGTTGATCTTGAA+GGG | - | chr2_1:72838497-72838516 | Msa0223300:CDS | 30.0% |
!! | TTTCATATAGTGAGAGTACT+TGG | - | chr2_1:72838554-72838573 | Msa0223300:CDS | 30.0% |
!! | TTCATATAGTGAGAGTACTT+GGG | - | chr2_1:72838555-72838574 | Msa0223300:CDS | 30.0% |
ATATCAGAATCCAACTCAAT+CGG | + | chr2_1:72838634-72838653 | None:intergenic | 30.0% | |
TGGAAATCTTAATACCAAAG+AGG | - | chr2_1:72838879-72838898 | Msa0223300:intron | 30.0% | |
TATATATATGGGAGGTTCAT+AGG | - | chr2_1:72839080-72839099 | Msa0223300:intron | 30.0% | |
CAATGATTATTTGCCTGTTT+AGG | - | chr2_1:72839192-72839211 | Msa0223300:intron | 30.0% | |
! | TATTTGCCTGTTTAGGATAT+CGG | - | chr2_1:72839199-72839218 | Msa0223300:intron | 30.0% |
TATATCCTAAAACTGCTCAT+TGG | - | chr2_1:72839256-72839275 | Msa0223300:intron | 30.0% | |
! | TAAAACCAATGAGCAGTTTT+AGG | + | chr2_1:72839264-72839283 | None:intergenic | 30.0% |
!! | TCAATATTAAAGGTGTTACC+CGG | + | chr2_1:72839330-72839349 | None:intergenic | 30.0% |
AACACCTTTAATATTGAAGC+AGG | - | chr2_1:72839333-72839352 | Msa0223300:intron | 30.0% | |
ACACCTTTAATATTGAAGCA+GGG | - | chr2_1:72839334-72839353 | Msa0223300:intron | 30.0% | |
AGAAAAAAAAAATCCCTTGG+TGG | + | chr2_1:72839586-72839605 | None:intergenic | 30.0% | |
AGCAGAAAAAAAAAATCCCT+TGG | + | chr2_1:72839589-72839608 | None:intergenic | 30.0% | |
!! | GAACTATTTCTTTTGAGCAT+CGG | - | chr2_1:72839665-72839684 | Msa0223300:intron | 30.0% |
TTATCTACACCATCCAAATA+TGG | + | chr2_1:72839899-72839918 | None:intergenic | 30.0% | |
TGTCAAAGCTAATATTACAG+AGG | - | chr2_1:72840033-72840052 | Msa0223300:intron | 30.0% | |
ACATGAACTATTTAGGCTAA+TGG | - | chr2_1:72840082-72840101 | Msa0223300:CDS | 30.0% | |
ATTCACTTATGGACTTGTAA+TGG | - | chr2_1:72840167-72840186 | Msa0223300:CDS | 30.0% | |
GGTAATCAAATTTGTGCAAA+TGG | - | chr2_1:72840213-72840232 | Msa0223300:CDS | 30.0% | |
! | ACTTTAAAGACAGTTAGTGA+CGG | + | chr2_1:72840412-72840431 | None:intergenic | 30.0% |
!! | TGTCTTTAAAGTTGCATACA+TGG | - | chr2_1:72840420-72840439 | Msa0223300:intron | 30.0% |
GTAGTCACATAAAACAAGAT+AGG | + | chr2_1:72840539-72840558 | None:intergenic | 30.0% | |
! | AAAGTATCACTCAGGTTAAA+AGG | + | chr2_1:72840676-72840695 | None:intergenic | 30.0% |
ATCATCCTATTTAGATCCTA+TGG | - | chr2_1:72840733-72840752 | Msa0223300:CDS | 30.0% | |
GTTAACCATAGGATCTAAAT+AGG | + | chr2_1:72840741-72840760 | None:intergenic | 30.0% | |
GTAAACCTATCTACAAAGAT+AGG | - | chr2_1:72840908-72840927 | Msa0223300:intron | 30.0% | |
! | CCTTTTCCATTATATGATGT+CGG | - | chr2_1:72841254-72841273 | Msa0223300:intron | 30.0% |
! | ACAAGATATCTATGTTTTCC+AGG | - | chr2_1:72841366-72841385 | Msa0223300:intron | 30.0% |
! | CAAGATATCTATGTTTTCCA+GGG | - | chr2_1:72841367-72841386 | Msa0223300:intron | 30.0% |
AAAAAGGCTTCAATTACTCT+TGG | - | chr2_1:72841534-72841553 | Msa0223300:CDS | 30.0% | |
!! | TAATCAGAAAGTATTGTCAC+AGG | + | chr2_1:72841722-72841741 | None:intergenic | 30.0% |
!! | AGAGTAAAAGCATCATAACT+TGG | + | chr2_1:72841937-72841956 | None:intergenic | 30.0% |
! | AGTTATGATGCTTTTACTCT+TGG | - | chr2_1:72841937-72841956 | Msa0223300:CDS | 30.0% |
! | GGTGCATTATATTTACGTTT+TGG | - | chr2_1:72842323-72842342 | Msa0223300:CDS | 30.0% |
!!! | TATATTTACGTTTTGGAGAG+AGG | - | chr2_1:72842330-72842349 | Msa0223300:CDS | 30.0% |
!! | GACTTGTTTTCTTTAGTACT+TGG | - | chr2_1:72842447-72842466 | Msa0223300:CDS | 30.0% |
TTCTTTAGTACTTGGAGAAT+TGG | - | chr2_1:72842455-72842474 | Msa0223300:CDS | 30.0% | |
CTGATTGTCTTGATATTTGA+TGG | - | chr2_1:72842507-72842526 | Msa0223300:CDS | 30.0% | |
!!! | GTTTGTTGTTGTTTTTGCGA+CGG | + | chr2_1:72837958-72837977 | None:intergenic | 35.0% |
!!! | TTGGTCTAGGTTTTTTACTC+CGG | - | chr2_1:72838216-72838235 | Msa0223300:CDS | 35.0% |
TTGGATAGTTTGACATCTAG+TGG | - | chr2_1:72838469-72838488 | Msa0223300:CDS | 35.0% | |
ATCTCCAAATGAACGGTATT+CGG | + | chr2_1:72838742-72838761 | None:intergenic | 35.0% | |
TACCGTTCATTTGGAGATTA+TGG | - | chr2_1:72838744-72838763 | Msa0223300:intron | 35.0% | |
ACCGTTCATTTGGAGATTAT+GGG | - | chr2_1:72838745-72838764 | Msa0223300:intron | 35.0% | |
ACCCATAATCTCCAAATGAA+CGG | + | chr2_1:72838749-72838768 | None:intergenic | 35.0% | |
TAGGTTGTTGCAGAAGATTA+GGG | - | chr2_1:72838798-72838817 | Msa0223300:intron | 35.0% | |
AGAAGTGGTATCATGATCAA+GGG | - | chr2_1:72838830-72838849 | Msa0223300:intron | 35.0% | |
! | TGTGCTTCAGTGGTTAATTT+TGG | - | chr2_1:72838859-72838878 | Msa0223300:intron | 35.0% |
GTTCAGTTCATTGATAAGCT+TGG | - | chr2_1:72838943-72838962 | Msa0223300:intron | 35.0% | |
! | ATTTGCCTGTTTAGGATATC+GGG | - | chr2_1:72839200-72839219 | Msa0223300:intron | 35.0% |
!!! | GGTTTTAGTTACTCACTTGA+TGG | - | chr2_1:72839277-72839296 | Msa0223300:intron | 35.0% |
! | CACTTGATGGATGTTTGTAT+TGG | - | chr2_1:72839290-72839309 | Msa0223300:intron | 35.0% |
CTTCCCTGCTTCAATATTAA+AGG | + | chr2_1:72839340-72839359 | None:intergenic | 35.0% | |
CGAATATTGAGGTTAATCCA+AGG | - | chr2_1:72839397-72839416 | Msa0223300:intron | 35.0% | |
AAAAGAGATGGATCAGAAGA+CGG | - | chr2_1:72839464-72839483 | Msa0223300:intron | 35.0% | |
! | TCAATTTTCTACAACCACCA+AGG | - | chr2_1:72839569-72839588 | Msa0223300:intron | 35.0% |
! | CAATTTTCTACAACCACCAA+GGG | - | chr2_1:72839570-72839589 | Msa0223300:intron | 35.0% |
TCAAAAGAAATAGTTCCACC+AGG | + | chr2_1:72839661-72839680 | None:intergenic | 35.0% | |
! | TTTCCTTCATGTTTTCTGCT+AGG | - | chr2_1:72839841-72839860 | Msa0223300:intron | 35.0% |
GGATGATCTTGCATTTAAGA+TGG | - | chr2_1:72839862-72839881 | Msa0223300:intron | 35.0% | |
TATGCACATCCATATTTGGA+TGG | - | chr2_1:72839887-72839906 | Msa0223300:intron | 35.0% | |
AACAGCTTACATGAAGAGTT+CGG | + | chr2_1:72839931-72839950 | None:intergenic | 35.0% | |
CCATAAGTGAATTTACTCTG+TGG | + | chr2_1:72840159-72840178 | None:intergenic | 35.0% | |
CCACAGAGTAAATTCACTTA+TGG | - | chr2_1:72840156-72840175 | Msa0223300:CDS | 35.0% | |
! | GATAACACACGTTTTGTGAA+TGG | - | chr2_1:72840342-72840361 | Msa0223300:intron | 35.0% |
! | TTAACATTTTCCTCCGTTGA+TGG | - | chr2_1:72840756-72840775 | Msa0223300:CDS | 35.0% |
AAAAAATAGTCCATCAACGG+AGG | + | chr2_1:72840769-72840788 | None:intergenic | 35.0% | |
ACTTGTCTAGTTGTATCCTT+TGG | - | chr2_1:72840865-72840884 | Msa0223300:intron | 35.0% | |
CTACTCCTATCTTTGTAGAT+AGG | + | chr2_1:72840916-72840935 | None:intergenic | 35.0% | |
TACAAAGATAGGAGTAGTAG+AGG | - | chr2_1:72840919-72840938 | Msa0223300:CDS | 35.0% | |
ACAAAGATAGGAGTAGTAGA+GGG | - | chr2_1:72840920-72840939 | Msa0223300:CDS | 35.0% | |
TAGTCTATAGTGTGCTATAG+CGG | - | chr2_1:72840967-72840986 | Msa0223300:CDS | 35.0% | |
! | CCGACATCATATAATGGAAA+AGG | + | chr2_1:72841257-72841276 | None:intergenic | 35.0% |
AAGTAGCCGACATCATATAA+TGG | + | chr2_1:72841263-72841282 | None:intergenic | 35.0% | |
! | ATTATATGATGTCGGCTACT+TGG | - | chr2_1:72841262-72841281 | Msa0223300:intron | 35.0% |
AATGTGTAGTTAGAGCTCAA+TGG | + | chr2_1:72841299-72841318 | None:intergenic | 35.0% | |
TCAGTGAACACTTCAATTCA+TGG | - | chr2_1:72841320-72841339 | Msa0223300:intron | 35.0% | |
CATAGATATCTTGTCCTCAA+AGG | + | chr2_1:72841360-72841379 | None:intergenic | 35.0% | |
TAAATAGAAAACATCAGGGC+CGG | + | chr2_1:72841676-72841695 | None:intergenic | 35.0% | |
! | TATGATGCTTTTACTCTTGG+TGG | - | chr2_1:72841940-72841959 | Msa0223300:CDS | 35.0% |
TGTAACCCCTTACAGAATAA+GGG | + | chr2_1:72841966-72841985 | None:intergenic | 35.0% | |
TTGTAACCCCTTACAGAATA+AGG | + | chr2_1:72841967-72841986 | None:intergenic | 35.0% | |
GAATGATCTAGGAAGTTCAA+AGG | - | chr2_1:72842181-72842200 | Msa0223300:CDS | 35.0% | |
GAAGTTCAAAGGATGTCAAA+GGG | - | chr2_1:72842192-72842211 | Msa0223300:CDS | 35.0% | |
AGTTCCTGAGTTATGATCAA+CGG | + | chr2_1:72842303-72842322 | None:intergenic | 35.0% | |
! | CTACTAGTCTAGTATTAGCA+CGG | + | chr2_1:72842428-72842447 | None:intergenic | 35.0% |
!!! | TGGTTTTTATTTTTGCGCCA+AGG | - | chr2_1:72842527-72842546 | Msa0223300:CDS | 35.0% |
!!! | GGTTTTTATTTTTGCGCCAA+GGG | - | chr2_1:72842528-72842547 | Msa0223300:CDS | 35.0% |
! | AACAAACCCGTTTTCCTCTA+CGG | - | chr2_1:72838091-72838110 | Msa0223300:exon | 40.0% |
ATGATTTCTATTGTTCCGGG+CGG | - | chr2_1:72838415-72838434 | Msa0223300:intron | 40.0% | |
!! | ATATAGTGAGAGTACTTGGG+AGG | - | chr2_1:72838558-72838577 | Msa0223300:CDS | 40.0% |
GGATTCTGATATGACTGAGA+AGG | - | chr2_1:72838642-72838661 | Msa0223300:CDS | 40.0% | |
TGATATGACTGAGAAGGAGA+GGG | - | chr2_1:72838648-72838667 | Msa0223300:CDS | 40.0% | |
GGTGAAACAGTATTTGAGTC+AGG | - | chr2_1:72838669-72838688 | Msa0223300:CDS | 40.0% | |
AACAGTATTTGAGTCAGGAG+AGG | - | chr2_1:72838674-72838693 | Msa0223300:intron | 40.0% | |
ACAGTATTTGAGTCAGGAGA+GGG | - | chr2_1:72838675-72838694 | Msa0223300:intron | 40.0% | |
ACGGTATTCGGCAAAATACA+CGG | + | chr2_1:72838730-72838749 | None:intergenic | 40.0% | |
TTTGCCGAATACCGTTCATT+TGG | - | chr2_1:72838735-72838754 | Msa0223300:intron | 40.0% | |
TGGAGATTATGGGTATGATG+AGG | - | chr2_1:72838755-72838774 | Msa0223300:intron | 40.0% | |
TGGGTATGATGAGGAAAGAA+AGG | - | chr2_1:72838764-72838783 | Msa0223300:intron | 40.0% | |
AAGAAAGGAGTTTGAGTGCT+AGG | - | chr2_1:72838779-72838798 | Msa0223300:intron | 40.0% | |
CTAGGTTGTTGCAGAAGATT+AGG | - | chr2_1:72838797-72838816 | Msa0223300:intron | 40.0% | |
GTTGCAGAAGATTAGGGATA+AGG | - | chr2_1:72838804-72838823 | Msa0223300:intron | 40.0% | |
TTAGGGATAAGGTTCAGAAG+TGG | - | chr2_1:72838815-72838834 | Msa0223300:intron | 40.0% | |
CAGAAGTGGTATCATGATCA+AGG | - | chr2_1:72838829-72838848 | Msa0223300:intron | 40.0% | |
TACCAAAGAGGTTGTTTGTG+AGG | - | chr2_1:72838891-72838910 | Msa0223300:intron | 40.0% | |
AACCTCACAAACAACCTCTT+TGG | + | chr2_1:72838896-72838915 | None:intergenic | 40.0% | |
GTTGTTTGTGAGGTTGTTGA+AGG | - | chr2_1:72838901-72838920 | Msa0223300:intron | 40.0% | |
AAGCTTGGCAATGTTGTTGA+AGG | - | chr2_1:72838958-72838977 | Msa0223300:intron | 40.0% | |
AAGCTCTCTATGTATCACAG+GGG | + | chr2_1:72838995-72839014 | None:intergenic | 40.0% | |
GAAGCTCTCTATGTATCACA+GGG | + | chr2_1:72838996-72839015 | None:intergenic | 40.0% | |
AACAACCCGATATCCTAAAC+AGG | + | chr2_1:72839208-72839227 | None:intergenic | 40.0% | |
! | ACTGAATGGAGTATTATCCC+TGG | - | chr2_1:72839498-72839517 | Msa0223300:intron | 40.0% |
! | CAGAAGTACAATACCAGAGT+TGG | + | chr2_1:72839537-72839556 | None:intergenic | 40.0% |
! | GAAGAAGTTGCTGGTTGTTA+TGG | + | chr2_1:72839725-72839744 | None:intergenic | 40.0% |
AATGAAGAATCTCAGCAGAC+TGG | + | chr2_1:72839768-72839787 | None:intergenic | 40.0% | |
CATCCTAGCAGAAAACATGA+AGG | + | chr2_1:72839847-72839866 | None:intergenic | 40.0% | |
GGAGTATGCACATCCATATT+TGG | - | chr2_1:72839883-72839902 | Msa0223300:intron | 40.0% | |
TGAATACTGGACTCAGCTTT+CGG | + | chr2_1:72839961-72839980 | None:intergenic | 40.0% | |
!! | AATGGTCAAAGAGTACTACC+TGG | - | chr2_1:72840231-72840250 | Msa0223300:CDS | 40.0% |
TTTGTGAATGGAGCTGTAGT+TGG | - | chr2_1:72840354-72840373 | Msa0223300:intron | 40.0% | |
!! | GCTAGAGAAAAGTATCACTC+AGG | + | chr2_1:72840684-72840703 | None:intergenic | 40.0% |
CGGAGGAAAATGTTAACCAT+AGG | + | chr2_1:72840752-72840771 | None:intergenic | 40.0% | |
! | ATATCTATGTTTTCCAGGGC+CGG | - | chr2_1:72841371-72841390 | Msa0223300:intron | 40.0% |
! | TTTTAGGCCTCTTAGTCTCT+AGG | - | chr2_1:72841649-72841668 | Msa0223300:CDS | 40.0% |
TTTAGGCCTCTTAGTCTCTA+GGG | - | chr2_1:72841650-72841669 | Msa0223300:CDS | 40.0% | |
TAAACCGTGTCAGAGTTAGT+TGG | + | chr2_1:72841822-72841841 | None:intergenic | 40.0% | |
! | GTTTATCCAGTTGATGTCTG+TGG | - | chr2_1:72841837-72841856 | Msa0223300:CDS | 40.0% |
TTCTGTAAGGGGTTACAACA+TGG | - | chr2_1:72841969-72841988 | Msa0223300:CDS | 40.0% | |
TCTGTAAGGGGTTACAACAT+GGG | - | chr2_1:72841970-72841989 | Msa0223300:CDS | 40.0% | |
GAGTTACGGATACCTGTTAA+AGG | - | chr2_1:72842128-72842147 | Msa0223300:CDS | 40.0% | |
TACACATGCATGCCTTTAAC+AGG | + | chr2_1:72842143-72842162 | None:intergenic | 40.0% | |
! | GTTAAAGGCATGCATGTGTA+TGG | - | chr2_1:72842143-72842162 | Msa0223300:CDS | 40.0% |
!! | TGTATGGTTTTGCAGAGCAT+GGG | - | chr2_1:72842159-72842178 | Msa0223300:CDS | 40.0% |
GGAAGTTCAAAGGATGTCAA+AGG | - | chr2_1:72842191-72842210 | Msa0223300:CDS | 40.0% | |
TTCGCCTATAGACTTCTGTA+GGG | + | chr2_1:72842220-72842239 | None:intergenic | 40.0% | |
ATTCGCCTATAGACTTCTGT+AGG | + | chr2_1:72842221-72842240 | None:intergenic | 40.0% | |
TACAGAAGTCTATAGGCGAA+TGG | - | chr2_1:72842220-72842239 | Msa0223300:CDS | 40.0% | |
ACAGAAGTCTATAGGCGAAT+GGG | - | chr2_1:72842221-72842240 | Msa0223300:CDS | 40.0% | |
ATGGGTCAAGGTTCATCTTA+TGG | - | chr2_1:72842239-72842258 | Msa0223300:CDS | 40.0% | |
CAAGGTTCATCTTATGGTGT+TGG | - | chr2_1:72842245-72842264 | Msa0223300:CDS | 40.0% | |
TATGCCGTTGATCATAACTC+AGG | - | chr2_1:72842296-72842315 | Msa0223300:CDS | 40.0% | |
GTTGATCATAACTCAGGAAC+TGG | - | chr2_1:72842302-72842321 | Msa0223300:CDS | 40.0% | |
CTCGTTCCATCCAACAACTT+CGG | - | chr2_1:72837914-72837933 | Msa0223300:three_prime_UTR | 45.0% | |
TTGATGCATTGAGGGAGAGA+GGG | + | chr2_1:72837980-72837999 | None:intergenic | 45.0% | |
! | GAGAGCAGTTGATGCATTGA+GGG | + | chr2_1:72837988-72838007 | None:intergenic | 45.0% |
! | TGAGAGCAGTTGATGCATTG+AGG | + | chr2_1:72837989-72838008 | None:intergenic | 45.0% |
TTTGTTAGAGTGGACGGCAA+TGG | + | chr2_1:72838077-72838096 | None:intergenic | 45.0% | |
!! | AACGGGTTTGTTAGAGTGGA+CGG | + | chr2_1:72838083-72838102 | None:intergenic | 45.0% |
!! | GGAAAACGGGTTTGTTAGAG+TGG | + | chr2_1:72838087-72838106 | None:intergenic | 45.0% |
ACAAATGCCGATGGAACTGT+TGG | - | chr2_1:72838523-72838542 | Msa0223300:CDS | 45.0% | |
CGTGATTCCAACAGTTCCAT+CGG | + | chr2_1:72838533-72838552 | None:intergenic | 45.0% | |
CGATGGAACTGTTGGAATCA+CGG | - | chr2_1:72838531-72838550 | Msa0223300:CDS | 45.0% | |
! | AACTCAATCGGCTTTGTCTG+CGG | + | chr2_1:72838622-72838641 | None:intergenic | 45.0% |
CTGATATGACTGAGAAGGAG+AGG | - | chr2_1:72838647-72838666 | Msa0223300:CDS | 45.0% | |
GTATAAGAGGAGGATGGAGA+AGG | - | chr2_1:72838699-72838718 | Msa0223300:intron | 45.0% | |
GGAAGCTCTCTATGTATCAC+AGG | + | chr2_1:72838997-72839016 | None:intergenic | 45.0% | |
ACATAGAGAGCTTCCCAAAG+AGG | - | chr2_1:72839002-72839021 | Msa0223300:intron | 45.0% | |
ATTGGATTAACAGCTGCGTC+CGG | - | chr2_1:72839308-72839327 | Msa0223300:intron | 45.0% | |
!! | TTTGAGCATCGGAATCTGCA+AGG | - | chr2_1:72839676-72839695 | Msa0223300:intron | 45.0% |
GGACTGAATAGAGCTCTTAG+TGG | - | chr2_1:72839697-72839716 | Msa0223300:intron | 45.0% | |
ACATGAAGAGTTCGGTTTCG+TGG | + | chr2_1:72839923-72839942 | None:intergenic | 45.0% | |
AAGCTGAGTCCAGTATTCAC+TGG | - | chr2_1:72839962-72839981 | Msa0223300:intron | 45.0% | |
AGCTGAGTCCAGTATTCACT+GGG | - | chr2_1:72839963-72839982 | Msa0223300:intron | 45.0% | |
! | TGGATGAAGTGCCACCAATA+TGG | - | chr2_1:72839996-72840015 | Msa0223300:intron | 45.0% |
! | GGATGAAGTGCCACCAATAT+GGG | - | chr2_1:72839997-72840016 | Msa0223300:intron | 45.0% |
GAGATAACAACTCGTGACGA+AGG | - | chr2_1:72840192-72840211 | Msa0223300:CDS | 45.0% | |
!! | TGGTACTGGCATTGATCACA+TGG | - | chr2_1:72840293-72840312 | Msa0223300:CDS | 45.0% |
TGGAGCGAGAAATATGTTCC+AGG | - | chr2_1:72840374-72840393 | Msa0223300:intron | 45.0% | |
ATAGGAGTAGTAGAGGGAAC+AGG | - | chr2_1:72840926-72840945 | Msa0223300:CDS | 45.0% | |
GTAGTAGAGGGAACAGGTTA+AGG | - | chr2_1:72840932-72840951 | Msa0223300:CDS | 45.0% | |
! | GAAGCATTTAGCAGCCGTAA+TGG | + | chr2_1:72841070-72841089 | None:intergenic | 45.0% |
TTACGGCTGCTAAATGCTTC+AGG | - | chr2_1:72841070-72841089 | Msa0223300:CDS | 45.0% | |
TACGGCTGCTAAATGCTTCA+GGG | - | chr2_1:72841071-72841090 | Msa0223300:CDS | 45.0% | |
TCCAACTTGCACTACCTTTG+AGG | - | chr2_1:72841343-72841362 | Msa0223300:intron | 45.0% | |
TCCTCAAAGGTAGTGCAAGT+TGG | + | chr2_1:72841347-72841366 | None:intergenic | 45.0% | |
TGCAAACTGCAGGTAGATCA+AGG | - | chr2_1:72841757-72841776 | Msa0223300:CDS | 45.0% | |
GCGATTGAAGAATGGGAACT+GGG | + | chr2_1:72841797-72841816 | None:intergenic | 45.0% | |
!! | GTTGGTGGCGATTGAAGAAT+GGG | + | chr2_1:72841804-72841823 | None:intergenic | 45.0% |
!! | AGTTGGTGGCGATTGAAGAA+TGG | + | chr2_1:72841805-72841824 | None:intergenic | 45.0% |
! | TATCCAGTTGATGTCTGTGG+AGG | - | chr2_1:72841840-72841859 | Msa0223300:CDS | 45.0% |
! | TTGGTGGCCCTTATTCTGTA+AGG | - | chr2_1:72841956-72841975 | Msa0223300:CDS | 45.0% |
TGGTGGCCCTTATTCTGTAA+GGG | - | chr2_1:72841957-72841976 | Msa0223300:CDS | 45.0% | |
GGTTACAACATGGGTGAACT+TGG | - | chr2_1:72841979-72841998 | Msa0223300:CDS | 45.0% | |
!! | GTGTATGGTTTTGCAGAGCA+TGG | - | chr2_1:72842158-72842177 | Msa0223300:CDS | 45.0% |
GGAACCCTACAGAAGTCTAT+AGG | - | chr2_1:72842213-72842232 | Msa0223300:CDS | 45.0% | |
TGGATTCTGCAATGATCCCT+TGG | + | chr2_1:72842547-72842566 | None:intergenic | 45.0% | |
! | TATGGTGTCAGTTGTTCCTG+TGG | + | chr2_1:72842567-72842586 | None:intergenic | 45.0% |
GGATGGAACGAGAGAAGACA+TGG | + | chr2_1:72837906-72837925 | None:intergenic | 50.0% | |
GTTCCATCCAACAACTTCGG+CGG | - | chr2_1:72837917-72837936 | Msa0223300:three_prime_UTR | 50.0% | |
!!! | GTTGTTGTTTTTGCGACGGC+CGG | + | chr2_1:72837954-72837973 | None:intergenic | 50.0% |
GTTGATGCATTGAGGGAGAG+AGG | + | chr2_1:72837981-72838000 | None:intergenic | 50.0% | |
GTGTTGCCGTAGAGGAAAAC+GGG | + | chr2_1:72838100-72838119 | None:intergenic | 50.0% | |
! | GGTGTTGCCGTAGAGGAAAA+CGG | + | chr2_1:72838101-72838120 | None:intergenic | 50.0% |
! | TGGTGGTTTGGAGGAGGAAA+CGG | - | chr2_1:72838178-72838197 | Msa0223300:CDS | 50.0% |
!! | GAGGAGGAGGATTTTGGTCT+AGG | - | chr2_1:72838203-72838222 | Msa0223300:CDS | 50.0% |
TCATCAGCAATAGCTGCTGC+CGG | + | chr2_1:72838238-72838257 | None:intergenic | 50.0% | |
GGCGCAACTACAGAAGGAAT+TGG | - | chr2_1:72838450-72838469 | Msa0223300:CDS | 50.0% | |
GAAGGGAAGACAAATGCCGA+TGG | - | chr2_1:72838514-72838533 | Msa0223300:CDS | 50.0% | |
GCAGACAAAGCCGATTGAGT+TGG | - | chr2_1:72838621-72838640 | Msa0223300:CDS | 50.0% | |
! | GTCAGGAGAGGGAGTATAAG+AGG | - | chr2_1:72838686-72838705 | Msa0223300:intron | 50.0% |
! | AGGAGAGGGAGTATAAGAGG+AGG | - | chr2_1:72838689-72838708 | Msa0223300:intron | 50.0% |
! | GAGGGAGTATAAGAGGAGGA+TGG | - | chr2_1:72838693-72838712 | Msa0223300:intron | 50.0% |
AGGGTATGCTTGTGCTTCAG+TGG | - | chr2_1:72838849-72838868 | Msa0223300:intron | 50.0% | |
TTGGATTAACAGCTGCGTCC+GGG | - | chr2_1:72839309-72839328 | Msa0223300:intron | 50.0% | |
! | TCACTAGTCTCATCAGGCCT+TGG | + | chr2_1:72839417-72839436 | None:intergenic | 50.0% |
AAGGCCTGATGAGACTAGTG+AGG | - | chr2_1:72839416-72839435 | Msa0223300:intron | 50.0% | |
AGGCCTGATGAGACTAGTGA+GGG | - | chr2_1:72839417-72839436 | Msa0223300:intron | 50.0% | |
! | CGGCTGATGTCAGTACTGAA+TGG | - | chr2_1:72839484-72839503 | Msa0223300:intron | 50.0% |
! | TGGAGTATTATCCCTGGACG+TGG | - | chr2_1:72839504-72839523 | Msa0223300:intron | 50.0% |
AGTATTATCCCTGGACGTGG+AGG | - | chr2_1:72839507-72839526 | Msa0223300:intron | 50.0% | |
GTATTATCCCTGGACGTGGA+GGG | - | chr2_1:72839508-72839527 | Msa0223300:intron | 50.0% | |
! | AGTTCCACCAGGTTGAAGTG+AGG | + | chr2_1:72839650-72839669 | None:intergenic | 50.0% |
CTGAGGGTTGAAGAAGTTGC+TGG | + | chr2_1:72839734-72839753 | None:intergenic | 50.0% | |
CAGCAACTTCTTCAACCCTC+AGG | - | chr2_1:72839732-72839751 | Msa0223300:intron | 50.0% | |
!! | ACTGGCTCAAGAGTACCTGA+GGG | + | chr2_1:72839750-72839769 | None:intergenic | 50.0% |
GCTGAGTCCAGTATTCACTG+GGG | - | chr2_1:72839964-72839983 | Msa0223300:intron | 50.0% | |
CTGAGTCCAGTATTCACTGG+GGG | - | chr2_1:72839965-72839984 | Msa0223300:intron | 50.0% | |
!! | CCACCAATATGGGTTGATCG+CGG | - | chr2_1:72840007-72840026 | Msa0223300:intron | 50.0% |
CTGTGGCGTGAAATTCTGCT+TGG | + | chr2_1:72840142-72840161 | None:intergenic | 50.0% | |
!! | GGTCAAAGAGTACTACCTGG+TGG | - | chr2_1:72840234-72840253 | Msa0223300:CDS | 50.0% |
!! | CAAAGAGTACTACCTGGTGG+TGG | - | chr2_1:72840237-72840256 | Msa0223300:CDS | 50.0% |
TCTGCACTAATTCCACCACC+AGG | + | chr2_1:72840252-72840271 | None:intergenic | 50.0% | |
!! | GGTGGTGGAATTAGTGCAGA+TGG | - | chr2_1:72840252-72840271 | Msa0223300:CDS | 50.0% |
! | TGACGGATGAGATAGTCACC+TGG | + | chr2_1:72840395-72840414 | None:intergenic | 50.0% |
CGCAGCTATTCGCACCATTA+CGG | - | chr2_1:72841053-72841072 | Msa0223300:CDS | 50.0% | |
ACGGCTGCTAAATGCTTCAG+GGG | - | chr2_1:72841072-72841091 | Msa0223300:CDS | 50.0% | |
GTAGATCAAGGCCTAGGCAT+TGG | - | chr2_1:72841769-72841788 | Msa0223300:CDS | 50.0% | |
GGCGATTGAAGAATGGGAAC+TGG | + | chr2_1:72841798-72841817 | None:intergenic | 50.0% | |
GCCACCAACTAACTCTGACA+CGG | - | chr2_1:72841815-72841834 | Msa0223300:CDS | 50.0% | |
ACCGTGTCAGAGTTAGTTGG+TGG | + | chr2_1:72841819-72841838 | None:intergenic | 50.0% | |
CTTCCTCCACAGACATCAAC+TGG | + | chr2_1:72841846-72841865 | None:intergenic | 50.0% | |
! | CAGTTGATGTCTGTGGAGGA+AGG | - | chr2_1:72841844-72841863 | Msa0223300:CDS | 50.0% |
GGTGGCCCTTATTCTGTAAG+GGG | - | chr2_1:72841958-72841977 | Msa0223300:CDS | 50.0% | |
TCCTACCTCCAGCATGTTTC+TGG | + | chr2_1:72842010-72842029 | None:intergenic | 50.0% | |
CACAGCTTGCAGCTGAGTTA+CGG | - | chr2_1:72842114-72842133 | Msa0223300:CDS | 50.0% | |
GCAGAGCATGGGAATGATCT+AGG | - | chr2_1:72842170-72842189 | Msa0223300:CDS | 50.0% | |
GTCTATAGGCGAATGGGTCA+AGG | - | chr2_1:72842227-72842246 | Msa0223300:CDS | 50.0% | |
!! | TATGGTGTTGGTGCCAAGCT+TGG | - | chr2_1:72842257-72842276 | Msa0223300:CDS | 50.0% |
!! | TGTTGGTGCCAAGCTTGGTT+TGG | - | chr2_1:72842262-72842281 | Msa0223300:CDS | 50.0% |
TGCTCTGACCAAACCAAGCT+TGG | + | chr2_1:72842273-72842292 | None:intergenic | 50.0% | |
GGGATCATTGCAGAATCCAC+AGG | - | chr2_1:72842548-72842567 | Msa0223300:exon | 50.0% | |
TGAGGGGTTTGAAGACACGG+CGG | + | chr2_1:72838024-72838043 | None:intergenic | 55.0% | |
CGGTGAGGGGTTTGAAGACA+CGG | + | chr2_1:72838027-72838046 | None:intergenic | 55.0% | |
TTCCTCTACGGCAACACCAC+TGG | - | chr2_1:72838103-72838122 | Msa0223300:CDS | 55.0% | |
!! | AACACCACTGGTGGTGGACA+TGG | - | chr2_1:72838115-72838134 | Msa0223300:CDS | 55.0% |
!! | GGTGGTGGTGGTGGAAGTAA+TGG | - | chr2_1:72838136-72838155 | Msa0223300:CDS | 55.0% |
!! | GGTGGTGGTGGAAGTAATGG+TGG | - | chr2_1:72838139-72838158 | Msa0223300:CDS | 55.0% |
GGTGGAAGTAATGGTGGCAG+TGG | - | chr2_1:72838145-72838164 | Msa0223300:CDS | 55.0% | |
GGAAGTAATGGTGGCAGTGG+TGG | - | chr2_1:72838148-72838167 | Msa0223300:CDS | 55.0% | |
AGTAATGGTGGCAGTGGTGG+TGG | - | chr2_1:72838151-72838170 | Msa0223300:CDS | 55.0% | |
! | TGGTTTGGAGGAGGAAACGG+AGG | - | chr2_1:72838181-72838200 | Msa0223300:CDS | 55.0% |
TTTGGAGGAGGAAACGGAGG+AGG | - | chr2_1:72838184-72838203 | Msa0223300:CDS | 55.0% | |
! | ACGGAGGAGGAGGAGGATTT+TGG | - | chr2_1:72838197-72838216 | Msa0223300:CDS | 55.0% |
TTCCGGGCGGAGTTTACACA+AGG | - | chr2_1:72838428-72838447 | Msa0223300:intron | 55.0% | |
TCCGGGCGGAGTTTACACAA+GGG | - | chr2_1:72838429-72838448 | Msa0223300:intron | 55.0% | |
! | CACAAGGGCGCAACTACAGA+AGG | - | chr2_1:72838444-72838463 | Msa0223300:CDS | 55.0% |
AGAGGAGGATGGAGAAGGCT+AGG | - | chr2_1:72838704-72838723 | Msa0223300:intron | 55.0% | |
! | CCTCCCTCACTAGTCTCATC+AGG | + | chr2_1:72839423-72839442 | None:intergenic | 55.0% |
CCTGATGAGACTAGTGAGGG+AGG | - | chr2_1:72839420-72839439 | Msa0223300:intron | 55.0% | |
TTGGATACCCTCCACGTCCA+GGG | + | chr2_1:72839518-72839537 | None:intergenic | 55.0% | |
!! | ACGTGGAGGGTATCCAACTC+TGG | - | chr2_1:72839521-72839540 | Msa0223300:intron | 55.0% |
GTTCAGGCCTCACTTCAACC+TGG | - | chr2_1:72839640-72839659 | Msa0223300:intron | 55.0% | |
!! | GACTGGCTCAAGAGTACCTG+AGG | + | chr2_1:72839751-72839770 | None:intergenic | 55.0% |
CCGCGATCAACCCATATTGG+TGG | + | chr2_1:72840010-72840029 | None:intergenic | 55.0% | |
CCACCGCGATCAACCCATAT+TGG | + | chr2_1:72840013-72840032 | None:intergenic | 55.0% | |
!! | CCAATATGGGTTGATCGCGG+TGG | - | chr2_1:72840010-72840029 | Msa0223300:intron | 55.0% |
GATCAATGCCAGTACCACCG+AGG | + | chr2_1:72840290-72840309 | None:intergenic | 55.0% | |
CGGCTGCTAAATGCTTCAGG+GGG | - | chr2_1:72841073-72841092 | Msa0223300:CDS | 55.0% | |
! | AAGCCCTTGCTTGGGTTGCT+TGG | + | chr2_1:72841405-72841424 | None:intergenic | 55.0% |
GCAACCCAAGCAAGGGCTTT+AGG | - | chr2_1:72841406-72841425 | Msa0223300:intron | 55.0% | |
GAGGCCTAAAGCCCTTGCTT+GGG | + | chr2_1:72841413-72841432 | None:intergenic | 55.0% | |
TGAGGCCTAAAGCCCTTGCT+TGG | + | chr2_1:72841414-72841433 | None:intergenic | 55.0% | |
CTGCAGGTAGATCAAGGCCT+AGG | - | chr2_1:72841763-72841782 | Msa0223300:CDS | 55.0% | |
ATGTCTGTGGAGGAAGGAGC+TGG | - | chr2_1:72841850-72841869 | Msa0223300:CDS | 55.0% | |
ATGGAGGACAAGAACTGGCG+GGG | + | chr2_1:72841884-72841903 | None:intergenic | 55.0% | |
CATGGAGGACAAGAACTGGC+GGG | + | chr2_1:72841885-72841904 | None:intergenic | 55.0% | |
CCATGGAGGACAAGAACTGG+CGG | + | chr2_1:72841886-72841905 | None:intergenic | 55.0% | |
CGCCTACACAACCACCATAG+CGG | + | chr2_1:72841909-72841928 | None:intergenic | 55.0% | |
!! | TGGTGCTGCCAGAAACATGC+TGG | - | chr2_1:72841999-72842018 | Msa0223300:CDS | 55.0% |
TGCTGCCAGAAACATGCTGG+AGG | - | chr2_1:72842002-72842021 | Msa0223300:CDS | 55.0% | |
GCCAGAAACATGCTGGAGGT+AGG | - | chr2_1:72842006-72842025 | Msa0223300:CDS | 55.0% | |
CGTAACTCAGCTGCAAGCTG+TGG | + | chr2_1:72842116-72842135 | None:intergenic | 55.0% | |
GTGCCGCCGAAGTTGTTGGA+TGG | + | chr2_1:72837923-72837942 | None:intergenic | 60.0% | |
!! | GATGGTGCCGCCGAAGTTGT+TGG | + | chr2_1:72837927-72837946 | None:intergenic | 60.0% |
TTCGGCGGCACCATCTTGTC+CGG | - | chr2_1:72837932-72837951 | Msa0223300:three_prime_UTR | 60.0% | |
TTTGCGACGGCCGGACAAGA+TGG | + | chr2_1:72837945-72837964 | None:intergenic | 60.0% | |
TTTGAAGACACGGCGGCGAC+GGG | + | chr2_1:72838017-72838036 | None:intergenic | 60.0% | |
GTTTGAAGACACGGCGGCGA+CGG | + | chr2_1:72838018-72838037 | None:intergenic | 60.0% | |
AATGGCAGCGGCGGAGGAAA+CGG | + | chr2_1:72838059-72838078 | None:intergenic | 60.0% | |
AGAGTGGACGGCAATGGCAG+CGG | + | chr2_1:72838071-72838090 | None:intergenic | 60.0% | |
!! | CACCAGTGGTGTTGCCGTAG+AGG | + | chr2_1:72838108-72838127 | None:intergenic | 60.0% |
CTCTACGGCAACACCACTGG+TGG | - | chr2_1:72838106-72838125 | Msa0223300:CDS | 60.0% | |
TACGGCAACACCACTGGTGG+TGG | - | chr2_1:72838109-72838128 | Msa0223300:CDS | 60.0% | |
!! | ACCACTGGTGGTGGACATGG+TGG | - | chr2_1:72838118-72838137 | Msa0223300:CDS | 60.0% |
ACCACCATGTCCACCACCAG+TGG | + | chr2_1:72838122-72838141 | None:intergenic | 60.0% | |
!! | ACTGGTGGTGGACATGGTGG+TGG | - | chr2_1:72838121-72838140 | Msa0223300:CDS | 60.0% |
!! | AATGGTGGCAGTGGTGGTGG+AGG | - | chr2_1:72838154-72838173 | Msa0223300:CDS | 60.0% |
!! | GGTGGTGGAGGTTGGTGGTT+TGG | - | chr2_1:72838166-72838185 | Msa0223300:CDS | 60.0% |
!! | GGTGGAGGTTGGTGGTTTGG+AGG | - | chr2_1:72838169-72838188 | Msa0223300:CDS | 60.0% |
!! | GGAGGTTGGTGGTTTGGAGG+AGG | - | chr2_1:72838172-72838191 | Msa0223300:CDS | 60.0% |
GCCCTTGTGTAAACTCCGCC+CGG | + | chr2_1:72838433-72838452 | None:intergenic | 60.0% | |
GTTGGATACCCTCCACGTCC+AGG | + | chr2_1:72839519-72839538 | None:intergenic | 60.0% | |
CAGGCCTCACTTCAACCTGG+TGG | - | chr2_1:72839643-72839662 | Msa0223300:intron | 60.0% | |
TGGTGGCACTTCATCCAGCC+CGG | + | chr2_1:72839993-72840012 | None:intergenic | 60.0% | |
GATGGACCTCCTACCAGCCT+CGG | - | chr2_1:72840270-72840289 | Msa0223300:CDS | 60.0% | |
AATGCCAGTACCACCGAGGC+TGG | + | chr2_1:72840286-72840305 | None:intergenic | 60.0% | |
! | GCGGCGTGTAGAGTGTTCAG+TGG | - | chr2_1:72840986-72841005 | Msa0223300:CDS | 60.0% |
! | TGTTTTCCAGGGCCGGCCTA+AGG | - | chr2_1:72841378-72841397 | Msa0223300:intron | 60.0% |
! | GTTTTCCAGGGCCGGCCTAA+GGG | - | chr2_1:72841379-72841398 | Msa0223300:intron | 60.0% |
! | GCTTGGGTTGCTTGGCCCTT+AGG | + | chr2_1:72841397-72841416 | None:intergenic | 60.0% |
AGGGCCAAGCAACCCAAGCA+AGG | - | chr2_1:72841398-72841417 | Msa0223300:intron | 60.0% | |
GGGCCAAGCAACCCAAGCAA+GGG | - | chr2_1:72841399-72841418 | Msa0223300:intron | 60.0% | |
!! | GGCCTCTTAGTCTCTAGGGC+CGG | - | chr2_1:72841654-72841673 | Msa0223300:CDS | 60.0% |
GGAACTGGGTGCCAATGCCT+AGG | + | chr2_1:72841783-72841802 | None:intergenic | 60.0% | |
TGGAGGACAAGAACTGGCGG+GGG | + | chr2_1:72841883-72841902 | None:intergenic | 60.0% | |
CCGCCAGTTCTTGTCCTCCA+TGG | - | chr2_1:72841883-72841902 | Msa0223300:CDS | 60.0% | |
CGGCCATGGAGGACAAGAAC+TGG | + | chr2_1:72841889-72841908 | None:intergenic | 60.0% | |
CTTGTCCTCCATGGCCGCTA+TGG | - | chr2_1:72841892-72841911 | Msa0223300:CDS | 60.0% | |
AACCACCATAGCGGCCATGG+AGG | + | chr2_1:72841900-72841919 | None:intergenic | 60.0% | |
CACAACCACCATAGCGGCCA+TGG | + | chr2_1:72841903-72841922 | None:intergenic | 60.0% | |
GGCCGCTATGGTGGTTGTGT+AGG | - | chr2_1:72841904-72841923 | Msa0223300:CDS | 60.0% | |
!! | GGTGGTGGACATGGTGGTGG+TGG | - | chr2_1:72838124-72838143 | Msa0223300:CDS | 65.0% |
!! | GGTGGACATGGTGGTGGTGG+TGG | - | chr2_1:72838127-72838146 | Msa0223300:CDS | 65.0% |
!! | GTGGCAGTGGTGGTGGAGGT+TGG | - | chr2_1:72838158-72838177 | Msa0223300:CDS | 65.0% |
!! | GCAGTGGTGGTGGAGGTTGG+TGG | - | chr2_1:72838161-72838180 | Msa0223300:CDS | 65.0% |
GGAGGAGGAAACGGAGGAGG+AGG | - | chr2_1:72838187-72838206 | Msa0223300:CDS | 65.0% | |
GGAGGAAACGGAGGAGGAGG+AGG | - | chr2_1:72838190-72838209 | Msa0223300:CDS | 65.0% | |
CCAGTATTCACTGGGGGCCC+CGG | - | chr2_1:72839971-72839990 | Msa0223300:intron | 65.0% | |
CAGTATTCACTGGGGGCCCC+GGG | - | chr2_1:72839972-72839991 | Msa0223300:intron | 65.0% | |
GTGGCACTTCATCCAGCCCG+GGG | + | chr2_1:72839991-72840010 | None:intergenic | 65.0% | |
GGTGGCACTTCATCCAGCCC+GGG | + | chr2_1:72839992-72840011 | None:intergenic | 65.0% | |
GTACCACCGAGGCTGGTAGG+AGG | + | chr2_1:72840279-72840298 | None:intergenic | 65.0% | |
CCAGTACCACCGAGGCTGGT+AGG | + | chr2_1:72840282-72840301 | None:intergenic | 65.0% | |
CCTACCAGCCTCGGTGGTAC+TGG | - | chr2_1:72840279-72840298 | Msa0223300:CDS | 65.0% | |
GGGTTGCTTGGCCCTTAGGC+CGG | + | chr2_1:72841393-72841412 | None:intergenic | 65.0% | |
GGCCGGCCCTAGAGACTAAG+AGG | + | chr2_1:72841659-72841678 | None:intergenic | 65.0% | |
AGGACAAGAACTGGCGGGGG+TGG | + | chr2_1:72841880-72841899 | None:intergenic | 65.0% | |
GTCCTCCATGGCCGCTATGG+TGG | - | chr2_1:72841895-72841914 | Msa0223300:CDS | 65.0% | |
AAGACACGGCGGCGACGGGA+AGG | + | chr2_1:72838013-72838032 | None:intergenic | 70.0% | |
! | AACGGCGACGGTGGCGGTGA+GGG | + | chr2_1:72838041-72838060 | None:intergenic | 70.0% |
! | AAACGGCGACGGTGGCGGTG+AGG | + | chr2_1:72838042-72838061 | None:intergenic | 70.0% |
GGAGGAAACGGCGACGGTGG+CGG | + | chr2_1:72838047-72838066 | None:intergenic | 70.0% | |
AGCGGCGGAGGAAACGGCGA+CGG | + | chr2_1:72838053-72838072 | None:intergenic | 70.0% | |
GTGGACGGCAATGGCAGCGG+CGG | + | chr2_1:72838068-72838087 | None:intergenic | 70.0% | |
CCGGGGCCCCCAGTGAATAC+TGG | + | chr2_1:72839974-72839993 | None:intergenic | 70.0% | |
GGACCTCCTACCAGCCTCGG+TGG | - | chr2_1:72840273-72840292 | Msa0223300:CDS | 70.0% | |
! | ACGGCGACGGTGGCGGTGAG+GGG | + | chr2_1:72838040-72838059 | None:intergenic | 75.0% |
GGCGGAGGAAACGGCGACGG+TGG | + | chr2_1:72838050-72838069 | None:intergenic | 75.0% | |
GACGGCAATGGCAGCGGCGG+AGG | + | chr2_1:72838065-72838084 | None:intergenic | 75.0% | |
ATTCACTGGGGGCCCCGGGC+TGG | - | chr2_1:72839976-72839995 | Msa0223300:intron | 75.0% | |
CTTGGCCCTTAGGCCGGCCC+TGG | + | chr2_1:72841387-72841406 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 72837864 | 72842597 | 72837864 | ID=Msa0223300;Name=Msa0223300 |
chr2_1 | mRNA | 72837864 | 72842597 | 72837864 | ID=Msa0223300-mRNA-1;Parent=Msa0223300;Name=Msa0223300-mRNA-1;_AED=0.06;_eAED=0.06;_QI=41|0.83|0.71|1|1|1|7|239|756 |
chr2_1 | exon | 72837864 | 72838342 | 72837864 | ID=Msa0223300-mRNA-1:exon:21174;Parent=Msa0223300-mRNA-1 |
chr2_1 | exon | 72838438 | 72838692 | 72838438 | ID=Msa0223300-mRNA-1:exon:21173;Parent=Msa0223300-mRNA-1 |
chr2_1 | exon | 72840066 | 72840314 | 72840066 | ID=Msa0223300-mRNA-1:exon:21172;Parent=Msa0223300-mRNA-1 |
chr2_1 | exon | 72840521 | 72840598 | 72840521 | ID=Msa0223300-mRNA-1:exon:21171;Parent=Msa0223300-mRNA-1 |
chr2_1 | exon | 72840708 | 72840815 | 72840708 | ID=Msa0223300-mRNA-1:exon:21170;Parent=Msa0223300-mRNA-1 |
chr2_1 | exon | 72840919 | 72841140 | 72840919 | ID=Msa0223300-mRNA-1:exon:21169;Parent=Msa0223300-mRNA-1 |
chr2_1 | exon | 72841438 | 72842597 | 72841438 | ID=Msa0223300-mRNA-1:exon:21168;Parent=Msa0223300-mRNA-1 |
chr2_1 | five_prime_UTR | 72842557 | 72842597 | 72842557 | ID=Msa0223300-mRNA-1:five_prime_utr;Parent=Msa0223300-mRNA-1 |
chr2_1 | CDS | 72841438 | 72842556 | 72841438 | ID=Msa0223300-mRNA-1:cds;Parent=Msa0223300-mRNA-1 |
chr2_1 | CDS | 72840919 | 72841140 | 72840919 | ID=Msa0223300-mRNA-1:cds;Parent=Msa0223300-mRNA-1 |
chr2_1 | CDS | 72840708 | 72840815 | 72840708 | ID=Msa0223300-mRNA-1:cds;Parent=Msa0223300-mRNA-1 |
chr2_1 | CDS | 72840521 | 72840598 | 72840521 | ID=Msa0223300-mRNA-1:cds;Parent=Msa0223300-mRNA-1 |
chr2_1 | CDS | 72840066 | 72840314 | 72840066 | ID=Msa0223300-mRNA-1:cds;Parent=Msa0223300-mRNA-1 |
chr2_1 | CDS | 72838438 | 72838692 | 72838438 | ID=Msa0223300-mRNA-1:cds;Parent=Msa0223300-mRNA-1 |
chr2_1 | CDS | 72838103 | 72838342 | 72838103 | ID=Msa0223300-mRNA-1:cds;Parent=Msa0223300-mRNA-1 |
chr2_1 | three_prime_UTR | 72837864 | 72838102 | 72837864 | ID=Msa0223300-mRNA-1:three_prime_utr;Parent=Msa0223300-mRNA-1 |
Gene Sequence |
Protein sequence |