AlfalfaGEDB | Msa0820460

M. sativa cultivar zhongmu-4 / Msa0820460

KEGG: K09499
GO: GO:0000003 GO:0002199 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005856 GO:0005874 GO:0006457 GO:0006458 GO:0006810 GO:0007338 GO:0007339 GO:0008037 GO:0008150 GO:0009566 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009988 GO:0010035 GO:0010038 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0015630 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0035036 GO:0042221 GO:0042802 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044183 GO:0044297 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045935 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051052 GO:0051054 GO:0051082 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051704 GO:0060255 GO:0060341 GO:0061077 GO:0065007 GO:0065008 GO:0070201 GO:0070202 GO:0070203 GO:0080090 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0101031 GO:1901998 GO:1903827 GO:1903829 GO:1904356 GO:1904358 GO:1904814 GO:1904816 GO:1904851 GO:1904951 GO:2000112 GO:2000278 GO:2000573 GO:2001252
PFAM: PF00118.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820460	XP_003617067.1	86.809	561	5	2	1	492	1	561	0.0	956

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820460	sp\|Q9SF16\|TCPH_ARATH	80.074	537	38	2	1	468	1	537	0.0	828

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820460	G7K2W1	86.809	561	5	2	1	492	1	561	0.0	956

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0223090	Msa0820460	0.808646	2.796464e-50	-8.615850e-47
Msa0223300	Msa0820460	0.833012	6.809010e-56	-8.615850e-47
Msa0302640	Msa0820460	0.804269	2.342341e-49	-8.615850e-47
Msa0532050	Msa0820460	0.818607	1.794880e-52	-8.615850e-47
Msa0740170	Msa0820460	0.880315	6.073570e-70	-8.615850e-47
Msa0820460	Msa1174720	0.813033	3.141304e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820460	MtrunA17_Chr5g0440381	86.809	561	5	2	1	492	1	561	0.0	956
Msa0820460	MtrunA17_Chr8g0380331	33.144	528	264	11	21	463	17	540	3.41e-76	249
Msa0820460	MtrunA17_Chr7g0241881	33.015	524	261	12	11	457	6	516	3.32e-73	240
Msa0820460	MtrunA17_Chr7g0272821	32.177	519	272	10	11	457	6	516	2.33e-72	238
Msa0820460	MtrunA17_Chr2g0282161	29.575	541	295	9	5	467	1	533	7.88e-71	235
Msa0820460	MtrunA17_Chr3g0123341	27.410	529	299	10	6	457	10	530	1.03e-51	183
Msa0820460	MtrunA17_Chr1g0160221	25.869	518	308	12	11	457	11	523	4.79e-45	165
Msa0820460	MtrunA17_Chr6g0461541	25.676	518	309	11	11	457	8	520	3.19e-43	160
Msa0820460	MtrunA17_Chr3g0139481	28.387	465	279	12	27	457	28	472	2.92e-42	156
Msa0820460	MtrunA17_Chr7g0214841	23.314	519	302	10	25	458	19	526	5.93e-31	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0820460	AT3G11830.1	80.074	537	38	2	1	468	1	537	0.0	828
Msa0820460	AT3G11830.2	79.702	537	38	3	1	468	1	535	0.0	819
Msa0820460	AT3G20050.1	32.163	541	269	12	17	468	13	544	1.34e-76	250
Msa0820460	AT5G20890.1	31.731	520	273	11	11	457	6	516	7.84e-71	234
Msa0820460	AT5G26360.1	29.575	541	295	10	5	467	1	533	2.72e-65	221
Msa0820460	AT1G24510.1	26.365	531	306	10	6	459	10	532	8.41e-50	179
Msa0820460	AT3G03960.1	25.806	527	311	13	5	457	6	526	2.73e-45	167
Msa0820460	AT1G24510.3	24.790	476	274	9	60	459	12	479	1.16e-37	144
Msa0820460	AT1G24510.2	25.000	428	256	8	89	459	37	456	1.37e-32	129
Msa0820460	AT3G02530.1	22.266	512	308	8	29	458	23	526	3.93e-31	126

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Find 142 sgRNAs with CRISPR-Local

Find 532 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTATAGGCGGAGAAA+AGG	0.483886	5_3:+57829608	Msa0820460:CDS
AAAAGAGTTGCTGCTGCAAC+TGG	0.305439	5_3:+57832181	Msa0820460:CDS
AAAATTTAATACGGAGTTAT+AGG	0.246244	5_3:+57829364	Msa0820460:CDS
AAACATGATTGGAATAAAGA+AGG	0.527009	5_3:+57829689	Msa0820460:CDS
AAACTCATCCACGATGATAA+AGG	0.411477	5_3:+57828180	Msa0820460:CDS
AAAGAGTTGCTGCTGCAACT+GGG	0.544621	5_3:+57832182	Msa0820460:CDS
AAAGGAATTCTTTGCATCTA+TGG	0.289996	5_3:+57829626	Msa0820460:CDS
AAGAATTCAACTGTAGTTGC+TGG	0.502547	5_3:+57832630	Msa0820460:CDS
AAGAGTTGCTGCTGCAACTG+GGG	0.532157	5_3:+57832183	Msa0820460:CDS
AAGGTACAGACACGTCTCAA+GGG	0.621195	5_3:+57828073	Msa0820460:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCTGCAAAATGATGAGAT+CGG	-	chr5_3:57828339-57828358	None:intergenic	30.0%
TTGTATTTGTTTCGTTCAGA+TGG	+	chr5_3:57828456-57828475	Msa0820460:intron	30.0%
CTTATTTCCATAAGTTCTCT+AGG	-	chr5_3:57828650-57828669	None:intergenic	30.0%
TTATTTGTAGCTTATAGCAC+AGG	+	chr5_3:57828796-57828815	Msa0820460:intron	30.0%
AAAACAATGTCACAAAACGT+AGG	+	chr5_3:57828974-57828993	Msa0820460:intron	30.0%
CTTATTTGCATAAGTTCTCT+AGG	-	chr5_3:57829087-57829106	None:intergenic	30.0%
GCTAAAATGAGCTTATCTAT+TGG	-	chr5_3:57829180-57829199	None:intergenic	30.0%
CACTTAGAGCTTAATTGAAT+TGG	-	chr5_3:57829202-57829221	None:intergenic	30.0%
TGAGATATAAGTACATACCA+AGG	-	chr5_3:57829400-57829419	None:intergenic	30.0%
CTTTCTTCAAAACTTATAGG+CGG	+	chr5_3:57829600-57829619	Msa0820460:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	57827818	57836702	57827818	ID=Msa0820460;Name=Msa0820460
chr5_3	mRNA	57827818	57836702	57827818	ID=Msa0820460-mRNA-1;Parent=Msa0820460;Name=Msa0820460-mRNA-1;_AED=0.12;_eAED=0.12;_QI=125\|0.76\|0.71\|1\|0.76\|0.64\|14\|405\|492
chr5_3	exon	57827818	57827957	57827818	ID=Msa0820460-mRNA-1:exon:17524;Parent=Msa0820460-mRNA-1
chr5_3	exon	57828048	57828292	57828048	ID=Msa0820460-mRNA-1:exon:17525;Parent=Msa0820460-mRNA-1
chr5_3	exon	57828300	57828308	57828300	ID=Msa0820460-mRNA-1:exon:17526;Parent=Msa0820460-mRNA-1
chr5_3	exon	57829326	57829401	57829326	ID=Msa0820460-mRNA-1:exon:17527;Parent=Msa0820460-mRNA-1
chr5_3	exon	57829507	57829710	57829507	ID=Msa0820460-mRNA-1:exon:17528;Parent=Msa0820460-mRNA-1
chr5_3	exon	57831573	57831742	57831573	ID=Msa0820460-mRNA-1:exon:17529;Parent=Msa0820460-mRNA-1
chr5_3	exon	57832141	57832243	57832141	ID=Msa0820460-mRNA-1:exon:17530;Parent=Msa0820460-mRNA-1
chr5_3	exon	57832345	57832464	57832345	ID=Msa0820460-mRNA-1:exon:17531;Parent=Msa0820460-mRNA-1
chr5_3	exon	57832570	57832668	57832570	ID=Msa0820460-mRNA-1:exon:17532;Parent=Msa0820460-mRNA-1
chr5_3	exon	57832763	57832852	57832763	ID=Msa0820460-mRNA-1:exon:17533;Parent=Msa0820460-mRNA-1
chr5_3	exon	57833654	57833741	57833654	ID=Msa0820460-mRNA-1:exon:17534;Parent=Msa0820460-mRNA-1
chr5_3	exon	57834712	57834800	57834712	ID=Msa0820460-mRNA-1:exon:17535;Parent=Msa0820460-mRNA-1
chr5_3	exon	57834885	57834959	57834885	ID=Msa0820460-mRNA-1:exon:17536;Parent=Msa0820460-mRNA-1
chr5_3	exon	57836202	57836702	57836202	ID=Msa0820460-mRNA-1:exon:17537;Parent=Msa0820460-mRNA-1
chr5_3	five_prime_UTR	57827818	57827942	57827818	ID=Msa0820460-mRNA-1:five_prime_utr;Parent=Msa0820460-mRNA-1
chr5_3	CDS	57827943	57827957	57827943	ID=Msa0820460-mRNA-1:cds;Parent=Msa0820460-mRNA-1
chr5_3	CDS	57828048	57828292	57828048	ID=Msa0820460-mRNA-1:cds;Parent=Msa0820460-mRNA-1
chr5_3	CDS	57828300	57828308	57828300	ID=Msa0820460-mRNA-1:cds;Parent=Msa0820460-mRNA-1
chr5_3	CDS	57829326	57829401	57829326	ID=Msa0820460-mRNA-1:cds;Parent=Msa0820460-mRNA-1
chr5_3	CDS	57829507	57829710	57829507	ID=Msa0820460-mRNA-1:cds;Parent=Msa0820460-mRNA-1
chr5_3	CDS	57831573	57831742	57831573	ID=Msa0820460-mRNA-1:cds;Parent=Msa0820460-mRNA-1
chr5_3	CDS	57832141	57832243	57832141	ID=Msa0820460-mRNA-1:cds;Parent=Msa0820460-mRNA-1
chr5_3	CDS	57832345	57832464	57832345	ID=Msa0820460-mRNA-1:cds;Parent=Msa0820460-mRNA-1
chr5_3	CDS	57832570	57832668	57832570	ID=Msa0820460-mRNA-1:cds;Parent=Msa0820460-mRNA-1
chr5_3	CDS	57832763	57832852	57832763	ID=Msa0820460-mRNA-1:cds;Parent=Msa0820460-mRNA-1
chr5_3	CDS	57833654	57833741	57833654	ID=Msa0820460-mRNA-1:cds;Parent=Msa0820460-mRNA-1
chr5_3	CDS	57834712	57834800	57834712	ID=Msa0820460-mRNA-1:cds;Parent=Msa0820460-mRNA-1
chr5_3	CDS	57834885	57834959	57834885	ID=Msa0820460-mRNA-1:cds;Parent=Msa0820460-mRNA-1
chr5_3	CDS	57836202	57836297	57836202	ID=Msa0820460-mRNA-1:cds;Parent=Msa0820460-mRNA-1
chr5_3	three_prime_UTR	57836298	57836702	57836298	ID=Msa0820460-mRNA-1:three_prime_utr;Parent=Msa0820460-mRNA-1

Gene Sequence

>Msa0820460

ATGTCTTCTATGCTGCAACCACAGATCATACTACTGAAAGAAGGTACAGACACGTCTCAAGGGAAGCCACAACTCGTAAGCAACATCAATGCTTGCTGCGCCGTTGCCGATGTCGTTCGAACCACCCTAGGTCCTCGCGGTATGGACAAACTCATCCACGATGATAAAGGTTCTGTCACCATTTCTAACGACGGCGCTACTATTATGAAGCTTCTTGATATCGTTCATCCCGCTGCGAAGATCTTAGTTGATATTGCTAAGACTCTGAGAGAAGCAAAGCCTTTCATTGAAGATGGTGTTCACTCTCAAAATTTAATACGGAGTTATAGGAATGCATGCTCCTTGGCGATTGAGAAGGTTAAAGAGCTAGCTGTTAGCATTGAGGGAAAAAGTTTGGAAGAGAAGAAAAATTTGCTTGGAAAGTGTGCTGCTACAACACTTTCTTCAAAACTTATAGGCGGAGAAAAGGAATTCTTTGCATCTATGGTTGTGGACGCTGTAATTGCAATTGGGACTGATGATAGGTTAAACATGATTGGAATAAAGAAGGTTCCTGGTGGTAACATGCGCGACTCATTTCTTGTCAATGGTGTTGCCTTCAAGAAGACATTTTCATATGCTGGATTTGAGCAGCAGCCCAAGAAGTTTCTCGATCCAAAAATACTATTACTTAATGTTGAGTTGGAGCTAAAATCTGAGAAAGAAAATGCCGAAATAAGAGACATTTTCTGTGCTGGTCGTGTAGCAGAAGAAGATCTTAAAAGAGTTGCTGCTGCAACTGGGGGAACAGTGCAAACATCTGTCAATAACATTATTGATGAGGTTCTTGGAACTTGTGAGATTTTTGAGGAAAAGCAAGTAGGAAACGAGAGATTCAACATCTTCAATGGATGTCCATCTGGCCAAACAGCCACCATAGTTCTCCGTGGTGGAGCCGATCAGTTCATAGAGGAAGCAGAGCGAAGTTTGCATGATGCAATCATGATTGTTAGAAGGGCTATGAAGAATTCAACTGTAGTTGCTGGTGGAGGTGCTATAGATATGGAAATAAGCCGGTACCTAAGGCAGCATGCACGCACAATAGCTGGAAAGTCTCAACTTTTCATCAACTCCTATGCAAAAGCTCTTGAGGTTATTCCCCGGCAATTATGTGACAATGCTGGATTTGATGCAACTGATGTGCTGAACAAACTAAGACAGAAACACGCGCTTCCTTCTGGTGAGGGTGCTCCATTTGGGGTCGACATAGCCACTGGTGGAATTGCTGATTCATTTGCCAACTTTGTCTGGGAGCCTGCAGTTGTAAAGATAAATGCTATAAATGCTGCTACAGAGGCAGCTTGCCTGGTCTTAAGTGTGGATGAAACAGTTAAAAATCCTAAGTCCGAGAGTGCACAAGGAGAGGCTGCTGCAAGTGCCATGGGAGGTAGAGGTCGCGGAGGTGGTTTCCGTGGCCGTGGACGAGGAATGCGTAGATGA

Protein sequence

>Msa0820460

MSSMLQPQIILLKEGTDTSQGKPQLVSNINACCAVADVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMKLLDIVHPAAKILVDIAKTLREAKPFIEDGVHSQNLIRSYRNACSLAIEKVKELAVSIEGKSLEEKKNLLGKCAATTLSSKLIGGEKEFFASMVVDAVIAIGTDDRLNMIGIKKVPGGNMRDSFLVNGVAFKKTFSYAGFEQQPKKFLDPKILLLNVELELKSEKENAEIRDIFCAGRVAEEDLKRVAAATGGTVQTSVNNIIDEVLGTCEIFEEKQVGNERFNIFNGCPSGQTATIVLRGGADQFIEEAERSLHDAIMIVRRAMKNSTVVAGGGAIDMEISRYLRQHARTIAGKSQLFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPSGEGAPFGVDIATGGIADSFANFVWEPAVVKINAINAATEAACLVLSVDETVKNPKSESAQGEAAASAMGGRGRGGGFRGRGRGMRR*