AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0740500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0740500 MtrunA17_Chr5g0440831 97.000 500 12 3 1 500 1 497 0.0 963
Msa0740500 MtrunA17_Chr7g0255011 52.500 400 143 9 121 491 82 463 1.56e-109 334
Msa0740500 MtrunA17_Chr8g0360551 46.341 246 119 5 99 342 12 246 4.27e-60 204
Msa0740500 MtrunA17_Chr4g0045921 43.049 223 118 1 120 342 30 243 1.10e-58 197
Msa0740500 MtrunA17_Chr3g0144311 40.625 96 52 1 162 257 25 115 1.66e-18 85.9
Msa0740500 MtrunA17_Chr1g0186351 24.265 272 184 5 161 415 1 267 2.06e-18 87.8
Msa0740500 MtrunA17_Chr2g0290191 25.000 192 120 4 161 338 1 182 9.86e-17 82.8
Msa0740500 MtrunA17_Chr5g0447761 25.532 282 158 10 167 420 7 264 1.78e-16 82.0
Msa0740500 MtrunA17_Chr6g0449481 26.163 172 118 3 167 337 46 209 3.42e-16 80.5
Msa0740500 MtrunA17_Chr5g0426311 40.741 81 48 0 162 242 12 92 8.23e-16 77.8
Msa0740500 MtrunA17_Chr8g0346011 40.964 83 49 0 162 244 33 115 3.60e-15 76.3
Msa0740500 MtrunA17_Chr3g0101061 24.590 183 120 3 167 338 41 216 1.18e-14 76.3
Msa0740500 MtrunA17_Chr7g0276531 38.554 83 51 0 162 244 14 96 1.69e-14 73.6
Msa0740500 MtrunA17_Chr3g0127751 37.931 87 54 0 162 248 22 108 2.19e-14 73.2
Msa0740500 MtrunA17_Chr4g0017401 38.554 83 51 0 162 244 12 94 2.76e-14 73.2
Msa0740500 MtrunA17_Chr5g0402191 24.224 161 114 3 166 326 4 156 4.95e-14 73.9
Msa0740500 MtrunA17_Chr3g0120721 24.375 160 113 2 167 326 19 170 2.08e-13 71.6
Msa0740500 MtrunA17_Chr8g0375101 23.602 161 115 4 166 326 4 156 3.70e-13 70.9
Msa0740500 MtrunA17_Chr8g0383661 28.230 209 124 5 147 339 183 381 4.51e-13 71.6
Msa0740500 MtrunA17_Chr1g0210241 38.158 76 46 1 167 241 8 83 4.78e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0740500 AT2G41060.1 48.062 516 185 16 1 499 1 450 1.40e-130 387
Msa0740500 AT2G41060.3 48.062 516 185 16 1 499 1 450 1.40e-130 387
Msa0740500 AT2G41060.2 48.062 516 185 16 1 499 1 450 1.40e-130 387
Msa0740500 AT3G56860.9 55.932 413 131 12 114 500 91 478 6.46e-129 384
Msa0740500 AT3G56860.11 55.932 413 131 12 114 500 91 478 6.46e-129 384
Msa0740500 AT3G56860.8 55.932 413 131 12 114 500 91 478 6.46e-129 384
Msa0740500 AT3G56860.5 55.932 413 131 12 114 500 91 478 6.46e-129 384
Msa0740500 AT3G56860.7 55.932 413 131 12 114 500 91 478 6.46e-129 384
Msa0740500 AT3G56860.2 55.932 413 131 12 114 500 91 478 6.46e-129 384
Msa0740500 AT3G56860.6 55.932 413 131 12 114 500 91 478 6.46e-129 384
Msa0740500 AT3G56860.10 55.932 413 131 12 114 500 91 478 6.46e-129 384
Msa0740500 AT3G56860.3 55.932 413 131 12 114 500 91 478 6.46e-129 384
Msa0740500 AT3G56860.1 55.932 413 131 12 114 500 91 478 6.46e-129 384
Msa0740500 AT3G56860.4 55.932 413 131 12 114 500 91 478 6.46e-129 384
Msa0740500 AT3G15010.1 44.889 225 120 1 119 343 28 248 7.84e-61 205
Msa0740500 AT3G15010.2 44.889 225 120 1 119 343 28 248 7.84e-61 205
Msa0740500 AT2G22090.1 49.606 127 64 0 119 245 57 183 3.38e-35 135
Msa0740500 AT2G22090.1 40.000 90 54 0 258 347 100 189 7.92e-13 70.1
Msa0740500 AT2G22090.2 49.606 127 64 0 119 245 57 183 4.96e-35 134
Msa0740500 AT2G22090.2 40.000 90 54 0 258 347 100 189 7.93e-13 70.1
Msa0740500 AT2G22100.1 44.681 141 71 1 113 253 110 243 2.01e-33 130
Msa0740500 AT2G19380.1 45.802 131 71 0 115 245 357 487 1.10e-31 129
Msa0740500 AT1G76460.1 42.424 99 50 2 162 254 20 117 1.10e-17 84.0
Msa0740500 AT1G20880.2 43.373 83 47 0 162 244 20 102 1.40e-17 83.2
Msa0740500 AT1G20880.3 43.373 83 47 0 162 244 20 102 1.40e-17 83.2
Msa0740500 AT1G20880.1 43.373 83 47 0 162 244 20 102 1.40e-17 83.2
Msa0740500 AT5G40490.1 26.163 172 118 2 167 337 43 206 4.59e-17 84.0
Msa0740500 AT1G22330.1 40.000 90 53 1 162 250 13 102 4.70e-16 79.3
Msa0740500 AT1G22330.1 32.075 106 66 1 255 354 10 115 2.48e-11 65.1
Msa0740500 AT3G07810.2 25.397 189 113 4 167 338 7 184 5.21e-16 80.9
Msa0740500 AT3G07810.1 25.397 189 113 4 167 338 7 184 6.66e-16 80.5
Msa0740500 AT1G17640.2 27.564 156 108 3 167 322 67 217 7.89e-16 79.7
Msa0740500 AT1G17640.1 27.564 156 108 3 167 322 67 217 7.89e-16 79.7
Msa0740500 AT1G17640.3 27.564 156 108 3 167 322 67 217 7.89e-16 79.7
Msa0740500 AT4G26650.1 25.543 184 124 3 167 338 16 198 1.59e-15 79.3
Msa0740500 AT4G26650.2 25.543 184 124 3 167 338 13 195 1.71e-15 79.3
Msa0740500 AT2G46780.1 38.947 95 58 0 160 254 16 110 1.77e-15 78.2
Msa0740500 AT2G46780.2 38.947 95 58 0 160 254 16 110 1.77e-15 78.2
Msa0740500 AT1G78260.1 39.506 81 49 0 162 242 13 93 2.14e-15 77.0
Msa0740500 AT5G55550.5 24.576 236 139 7 167 375 7 230 2.33e-15 78.6
Msa0740500 AT5G55550.4 24.576 236 139 7 167 375 7 230 2.33e-15 78.6
Msa0740500 AT5G55550.9 24.576 236 139 7 167 375 7 230 2.33e-15 78.6
Msa0740500 AT5G55550.7 24.576 236 139 7 167 375 7 230 2.33e-15 78.6
Msa0740500 AT5G55550.1 24.576 236 139 7 167 375 7 230 2.33e-15 78.6
Msa0740500 AT5G55550.2 24.865 185 121 4 167 338 7 186 3.96e-15 78.2
Msa0740500 AT5G55550.3 24.865 185 121 4 167 338 7 186 3.96e-15 78.2
Msa0740500 AT5G55550.6 24.865 185 121 4 167 338 7 186 3.96e-15 78.2
Msa0740500 AT5G55550.11 24.865 185 121 4 167 338 7 186 3.96e-15 78.2
Msa0740500 AT1G78260.2 39.506 81 49 0 162 242 13 93 8.61e-15 75.1
Msa0740500 AT4G36960.1 24.157 178 116 4 166 338 3 166 8.79e-15 76.6
Msa0740500 AT4G36960.2 24.157 178 116 4 166 338 3 166 8.79e-15 76.6
Msa0740500 AT5G47620.1 23.280 189 115 3 167 338 7 182 8.81e-15 77.0
Msa0740500 AT5G47620.2 23.280 189 115 3 167 338 7 182 8.81e-15 77.0
Msa0740500 AT5G47620.5 23.280 189 115 3 167 338 7 182 8.81e-15 77.0
Msa0740500 AT3G06970.1 43.590 78 44 0 167 244 13 90 1.06e-14 75.5
Msa0740500 AT1G22910.1 40.964 83 49 0 162 244 9 91 2.26e-14 73.6
Msa0740500 AT1G22910.2 40.964 83 49 0 162 244 9 91 2.62e-14 73.2
Msa0740500 AT5G53680.1 36.364 99 59 1 160 254 7 105 2.50e-13 68.6
Msa0740500 AT1G22910.3 40.964 83 49 0 162 244 9 91 2.67e-13 71.6
Msa0740500 AT4G14300.1 21.939 196 125 4 161 338 1 186 4.56e-13 71.2
Msa0740500 AT4G14300.2 21.939 196 125 4 161 338 1 186 4.56e-13 71.2
Msa0740500 AT2G33410.1 22.652 181 130 2 167 338 7 186 5.19e-13 71.2
Msa0740500 AT1G33470.3 37.349 83 52 0 162 244 3 85 5.24e-13 69.3
Msa0740500 AT1G33470.2 37.349 83 52 0 162 244 3 85 7.98e-13 68.9
Msa0740500 AT1G33470.1 37.349 83 52 0 162 244 3 85 8.09e-13 68.9
Msa0740500 AT3G13224.3 24.845 161 115 1 166 326 10 164 1.87e-12 68.9
Msa0740500 AT5G40490.2 24.823 141 98 1 186 326 45 177 2.02e-12 69.3
Msa0740500 AT3G54770.1 38.554 83 51 0 162 244 13 95 2.53e-12 67.4
Msa0740500 AT3G13224.2 24.375 160 115 1 167 326 20 173 2.69e-12 68.6
Msa0740500 AT3G54770.3 38.554 83 51 0 162 244 13 95 3.04e-12 67.4
Msa0740500 AT5G11412.1 36.471 85 54 0 160 244 46 130 1.56e-11 63.5
Msa0740500 AT1G60650.2 36.842 76 47 1 167 241 13 88 1.95e-11 65.5
Msa0740500 AT1G60650.1 36.842 76 47 1 167 241 13 88 1.95e-11 65.5
Msa0740500 AT5G53720.1 38.462 78 48 0 167 244 10 87 2.33e-11 60.8
Msa0740500 AT4G24770.1 23.626 182 132 5 167 344 151 329 3.27e-11 65.1
Msa0740500 AT4G24770.2 23.626 182 132 5 167 344 151 329 3.27e-11 65.1

Find 281 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTCAAGTATCTATATT+TGG 0.119088 5_1:-59443521 Msa0740500:intron
ATTTGAATGTTTATTTCTTC+TGG 0.167512 5_1:-59444584 Msa0740500:three_prime_UTR
AGATCGAAGCTTTCGTTTCT+TGG 0.186412 5_1:+59447460 None:intergenic
CTGTAGACCTTATATTTATC+TGG 0.210370 5_1:-59444855 Msa0740500:three_prime_UTR
TCGGCTTGTTTGGTGGGTTC+AGG 0.212017 5_1:+59447431 None:intergenic
CATATGTATCCCTACCAAAA+TGG 0.213199 5_1:+59443070 None:intergenic
TACTTCTTCTTGTTGGGGTT+CGG 0.223272 5_1:+59447406 None:intergenic
GGGAATTTGCTTGGAGGTCT+TGG 0.253466 5_1:-59446156 Msa0740500:CDS
TTCGGCTACTTCTTCTTGTT+GGG 0.255517 5_1:+59447400 None:intergenic
GCTGTGACTGATAAGAATTC+TGG 0.262013 5_1:-59446876 Msa0740500:CDS
CAACATTAAGAAGGTAATAT+TGG 0.262561 5_1:-59443333 Msa0740500:three_prime_UTR
CGGTCATAGTATCCCCATTT+TGG 0.262987 5_1:-59443084 Msa0740500:three_prime_UTR
GTAATTTCGGATTGGGTTCT+TGG 0.280286 5_1:-59443227 Msa0740500:three_prime_UTR
CTTCGGCTACTTCTTCTTGT+TGG 0.283404 5_1:+59447399 None:intergenic
ACTTCTTCTTGTTGGGGTTC+GGG 0.291185 5_1:+59447407 None:intergenic
TTTAAAAGATGCATTTGAAT+AGG 0.294244 5_1:+59445068 None:intergenic
TCCCGGTGGCGCTCCTTACA+TGG 0.295626 5_1:-59445992 Msa0740500:CDS
TTTGAATGTTTATTTCTTCT+GGG 0.295797 5_1:-59444583 Msa0740500:three_prime_UTR
TAGTACCTCTTGTTCCTTTG+TGG 0.301055 5_1:-59444941 Msa0740500:three_prime_UTR
ATCTTTGTACAATGTCAAAA+TGG 0.302386 5_1:-59443593 Msa0740500:three_prime_UTR
ATTTCTTCTTCTTGTGTTGT+TGG 0.303042 5_1:+59447371 None:intergenic
CTCTTTAACTATTGACTGTC+TGG 0.311110 5_1:-59443910 Msa0740500:three_prime_UTR
TTCGGGTTCGGCTTGTTTGG+TGG 0.320019 5_1:+59447424 None:intergenic
CTTCGCAAGCAAATAAAATA+TGG 0.321371 5_1:+59444141 None:intergenic
TTAAAAGATGCATTTGAATA+GGG 0.324087 5_1:+59445069 None:intergenic
CTTGACCCAGCTGAGGATTC+TGG 0.326079 5_1:+59446040 None:intergenic
TCATTTGACTTTGATTTATG+AGG 0.332363 5_1:-59444747 Msa0740500:three_prime_UTR
TTCTTGTTGGGGTTCGGGTT+CGG 0.334657 5_1:+59447412 None:intergenic
AAAATCTTTGTTCATGGTCT+TGG 0.349785 5_1:-59446966 Msa0740500:CDS
TGCCCCTCGAACACCTTATT+CGG 0.354163 5_1:+59446498 None:intergenic
TGCTGCTGCGTATGGTAATC+AGG 0.354467 5_1:-59446103 Msa0740500:CDS
GAGGTGGATGATGGTCCATT+GGG 0.357481 5_1:-59446606 Msa0740500:CDS
CAACGCCGGTGTGCCGGCTC+AGG 0.360674 5_1:-59446247 Msa0740500:CDS
GCTATGGGATATGGCCAGCC+TGG 0.363089 5_1:-59446078 Msa0740500:CDS
CTTCTTAATGTTGAAGGTCT+AGG 0.363422 5_1:+59443343 None:intergenic
CGGTGATTGAATCGAGATTA+GGG 0.364094 5_1:+59447489 None:intergenic
TTGTATAGTAATTTCGGATT+GGG 0.370361 5_1:-59443234 Msa0740500:three_prime_UTR
TATTACCTTCTTAATGTTGA+AGG 0.370866 5_1:+59443337 None:intergenic
TATTCAACAACGACGAGCTT+TGG 0.371775 5_1:-59444402 Msa0740500:three_prime_UTR
TGAGGTTGATCTTCTTCAAT+CGG 0.376109 5_1:+59447344 None:intergenic
CACCGGAAAATCTTTGTTCA+TGG 0.376446 5_1:-59446972 Msa0740500:CDS
GGCTTCGGCTGGACCTGTTC+CGG 0.376743 5_1:-59446745 Msa0740500:CDS
CGGCTTGTTTGGTGGGTTCA+GGG 0.376961 5_1:+59447432 None:intergenic
ATTGAATCGAGATTAGGGTT+AGG 0.382544 5_1:+59447494 None:intergenic
AATCAGGCTGCTATGGGATA+TGG 0.385926 5_1:-59446087 Msa0740500:CDS
CTTTGTTCATGGTCTTGGTT+GGG 0.386488 5_1:-59446961 Msa0740500:CDS
AAAATACAGGTTTCAGAATC+CGG 0.388409 5_1:+59445009 None:intergenic
CAAGGAGCTGGATTGGGACT+TGG 0.389500 5_1:-59446177 Msa0740500:CDS
TCTTCAACTGTCACCAAGTT+GGG 0.390042 5_1:-59443828 Msa0740500:three_prime_UTR
GCGGTGATTGAATCGAGATT+AGG 0.390660 5_1:+59447488 None:intergenic
GGGTTCGGGTTCGGCTTGTT+TGG 0.394301 5_1:+59447421 None:intergenic
TGGTGAACATTATATTTCTC+TGG 0.394692 5_1:+59443168 None:intergenic
TTGGGACTTGGGAATTTGCT+TGG 0.397145 5_1:-59446165 Msa0740500:CDS
TTGTGTTGTTGGTTCTTCTT+CGG 0.397521 5_1:+59447382 None:intergenic
ATATGTATCCCTACCAAAAT+GGG 0.397918 5_1:+59443071 None:intergenic
ATTGACTGTCTGGGAAAGTT+CGG 0.399115 5_1:-59443900 Msa0740500:three_prime_UTR
ATAAAATGATAAATGCCTTA+TGG 0.399367 5_1:+59444324 None:intergenic
AAAATAGAGATCATACATTA+GGG 0.401572 5_1:-59443432 Msa0740500:three_prime_UTR
TGGGTCAAGTATCTATATTT+GGG 0.401841 5_1:-59443520 Msa0740500:intron
CTATTTGGTTACTAAAGAAC+CGG 0.402843 5_1:-59445028 Msa0740500:three_prime_UTR
AAGCAGCCGCAGAAAGTGAT+TGG 0.406418 5_1:-59446792 Msa0740500:CDS
AAAGAAGGTTGATTGTGGTT+TGG 0.406826 5_1:-59443143 Msa0740500:three_prime_UTR
ACAAGAGGAAGATCTTGAAT+TGG 0.407627 5_1:-59447126 Msa0740500:CDS
CAGGGATTGAATCCGGCTCT+TGG 0.407933 5_1:-59446228 Msa0740500:CDS
AACTTTGTTTAGCAAGTGTT+AGG 0.410268 5_1:-59444189 Msa0740500:three_prime_UTR
GTTTGGTGAAAGAGAGAGAA+AGG 0.410758 5_1:+59447517 None:intergenic
TTCGGTGGAGGAGCCGGAAC+AGG 0.417847 5_1:+59446732 None:intergenic
TCGAGATTAGGGTTAGGGTT+TGG 0.421651 5_1:+59447500 None:intergenic
TGCTAATCAAGGAGCTGGAT+TGG 0.425869 5_1:-59446184 Msa0740500:CDS
AGTTGTTTCAAAGAAAAGTT+GGG 0.426254 5_1:+59443014 None:intergenic
TCTTTCACCTTCCTCAATAG+AGG 0.427273 5_1:-59444359 Msa0740500:three_prime_UTR
TTGAATCGAGATTAGGGTTA+GGG 0.429527 5_1:+59447495 None:intergenic
GGACTTGGGAATTTGCTTGG+AGG 0.433363 5_1:-59446162 Msa0740500:CDS
TCTGCTTTGCTTGCTAATCA+AGG 0.433664 5_1:-59446195 Msa0740500:CDS
TAGAAATCCAGATAAATATA+AGG 0.434036 5_1:+59444848 None:intergenic
CTGTGACTGATAAGAATTCT+GGG 0.435142 5_1:-59446875 Msa0740500:CDS
TTTGGGTTGTGGATTTAGAA+TGG 0.437934 5_1:-59444522 Msa0740500:three_prime_UTR
TAGTTGTTTCAAAGAAAAGT+TGG 0.438630 5_1:+59443013 None:intergenic
TATTGTCAGAAGGCTGTTGA+TGG 0.441220 5_1:-59446468 Msa0740500:CDS
TCAGACACCGGTGGCGCATT+CGG 0.442681 5_1:+59446714 None:intergenic
ATCACACGGTGGTCACTTGA+TGG 0.443713 5_1:-59446298 Msa0740500:CDS
CGAACATTCTCAGACAGATC+TGG 0.446657 5_1:+59447020 None:intergenic
TTTGTATAGTAATTTCGGAT+TGG 0.450522 5_1:-59443235 Msa0740500:three_prime_UTR
TGGTATTGTGGCTGCAACCC+AGG 0.451026 5_1:+59446060 None:intergenic
GGCGCATTCGGTGGAGGAGC+CGG 0.453295 5_1:+59446726 None:intergenic
GAGGTTGATCTTCTTCAATC+GGG 0.454540 5_1:+59447345 None:intergenic
TGGTTACAACGCCGGTGTGC+CGG 0.455193 5_1:-59446253 Msa0740500:CDS
GAGAGAAAGGGGAAAATTAG+TGG 0.455205 5_1:+59447530 None:intergenic
GCTAATCAAGGAGCTGGATT+GGG 0.456434 5_1:-59446183 Msa0740500:CDS
CGGTGAAATTGAAGATTGTA+AGG 0.458299 5_1:-59446898 Msa0740500:CDS
TTGACTGTCTGGGAAAGTTC+GGG 0.458598 5_1:-59443899 Msa0740500:three_prime_UTR
TCTTTGTTCATGGTCTTGGT+TGG 0.459374 5_1:-59446962 Msa0740500:CDS
TGTAATTGCTCCTTCGTGAA+TGG 0.461004 5_1:+59447074 None:intergenic
AAATGTTTGATGCATCTATG+AGG 0.461196 5_1:+59445128 None:intergenic
TAGGACTACATCGTGTCAAT+TGG 0.462310 5_1:-59446766 Msa0740500:CDS
ATATCTTTGTGTCAGCTTCG+TGG 0.462625 5_1:+59443291 None:intergenic
TCCATCTTTGATGTGGCGGT+TGG 0.464409 5_1:-59443382 Msa0740500:three_prime_UTR
CGCAGAAAGTGATTGGGAAT+AGG 0.466923 5_1:-59446785 Msa0740500:CDS
TGGTCCATTGGGGTTGGATA+AGG 0.467413 5_1:-59446595 Msa0740500:CDS
GTATGGTAATCAGGCTGCTA+TGG 0.467614 5_1:-59446094 Msa0740500:CDS
GGCGTTGGAAGAGCCGAATA+AGG 0.467801 5_1:-59446511 Msa0740500:CDS
ATTGAATCCGGCTCTTGGAC+AGG 0.468734 5_1:-59446223 Msa0740500:CDS
CCTCAGCTGGGTCAAGGTGG+TGG 0.468825 5_1:-59446033 Msa0740500:CDS
AGCATCGGACTGGGTGTCGT+CGG 0.471058 5_1:-59446821 Msa0740500:CDS
TCGGGTTCGGCTTGTTTGGT+GGG 0.471504 5_1:+59447425 None:intergenic
GGAGGTTGCAGAAGATGAAG+AGG 0.471827 5_1:-59447288 Msa0740500:CDS
ACCCATGTAAGGAGCGCCAC+CGG 0.472419 5_1:+59445990 None:intergenic
TTCTTCAACTGTCACCAAGT+TGG 0.472423 5_1:-59443829 Msa0740500:three_prime_UTR
TTGCTTGCTAATCAAGGAGC+TGG 0.472566 5_1:-59446189 Msa0740500:CDS
GAGATTCTGTAAGTTAAAGA+AGG 0.474363 5_1:+59443870 None:intergenic
GGTTCTAGAAGCTTCTCAAC+AGG 0.476416 5_1:+59447095 None:intergenic
CTACGATAGAAAGAAAATAC+AGG 0.476475 5_1:+59444996 None:intergenic
GCATCGGACTGGGTGTCGTC+GGG 0.476975 5_1:-59446820 Msa0740500:CDS
TACATCGTGTCAATTGGCTT+CGG 0.478390 5_1:-59446760 Msa0740500:CDS
ACAAACAGCGCAAAACCCTT+TGG 0.479302 5_1:+59446561 None:intergenic
GTCTGAGAATGTTCGTCAGC+TGG 0.480431 5_1:-59447012 Msa0740500:CDS
GCCGGCTCAGGGATTGAATC+CGG 0.480635 5_1:-59446235 Msa0740500:CDS
GAAGGCTGTTGATGGTCCTA+AGG 0.480805 5_1:-59446460 Msa0740500:CDS
TGTGTTTATGCATGTCATAA+AGG 0.480820 5_1:+59443113 None:intergenic
AGAGGTGGATGATGGTCCAT+TGG 0.483246 5_1:-59446607 Msa0740500:CDS
CACCATCACGGTGGTGGTGG+TGG 0.484347 5_1:-59446372 Msa0740500:CDS
AATTTGCTTGGAGGTCTTGG+TGG 0.484936 5_1:-59446153 Msa0740500:CDS
CTGATGTGGACCCCGCTCAC+CGG 0.485472 5_1:-59446989 Msa0740500:CDS
TCCTCCACCGAATGCGCCAC+CGG 0.486406 5_1:-59446721 Msa0740500:CDS
AAGGAGCTGGATTGGGACTT+GGG 0.487129 5_1:-59446176 Msa0740500:CDS
ATTGTGGCTGCAACCCAGGC+TGG 0.487864 5_1:+59446064 None:intergenic
GGAGGACCAGCTTGATTCAC+CGG 0.487882 5_1:+59446126 None:intergenic
GGTCACTTGATGGCTCCTAC+TGG 0.489465 5_1:-59446288 Msa0740500:CDS
GCCAACCGCCACATCAAAGA+TGG 0.489578 5_1:+59443381 None:intergenic
GAGGGCTGGATTTGTGAAGG+TGG 0.491755 5_1:+59444297 None:intergenic
TAGCCTTGGAAGTGAATAGC+AGG 0.492078 5_1:+59444029 None:intergenic
TTTGGTGAAAGAGAGAGAAA+GGG 0.492621 5_1:+59447518 None:intergenic
CGCTCCTTACATGGGTCACT+AGG 0.492696 5_1:-59445983 Msa0740500:intron
TCAAGTGACCACCGTGTGAT+GGG 0.493869 5_1:+59446301 None:intergenic
ATGGCTCCTACTGGTCCTGC+TGG 0.494184 5_1:-59446279 Msa0740500:CDS
TCGTGTCAATTGGCTTCGGC+TGG 0.495359 5_1:-59446756 Msa0740500:CDS
GCGCCACCGGGACCAGGATG+AGG 0.495486 5_1:+59446003 None:intergenic
ACCGGTGGCGCATTCGGTGG+AGG 0.495710 5_1:+59446720 None:intergenic
AAGCTTTCGTTTCTTGGCCA+TGG 0.498024 5_1:+59447466 None:intergenic
CTCACCTAGTGACCCATGTA+AGG 0.500179 5_1:+59445979 None:intergenic
CTAAAAGTGGCCACACTTGG+TGG 0.502612 5_1:-59444009 Msa0740500:three_prime_UTR
AAGTATTCACATGGTGGTGG+TGG 0.503763 5_1:-59446324 Msa0740500:CDS
ACAATACCAGAATCCTCAGC+TGG 0.504026 5_1:-59446046 Msa0740500:CDS
CTATGGGATATGGCCAGCCT+GGG 0.505656 5_1:-59446077 Msa0740500:CDS
CCTACTGGTCCTGCTGGTGG+TGG 0.506260 5_1:-59446273 Msa0740500:CDS
TGCGCTGTTTGTTTATAAGA+CGG 0.506286 5_1:-59446550 Msa0740500:CDS
ATTTGCTTGCGAAGTTGGCT+TGG 0.506383 5_1:-59444132 Msa0740500:three_prime_UTR
ATCAAGTGACCACCGTGTGA+TGG 0.507458 5_1:+59446300 None:intergenic
GACGGTTGAGAGTGCTAAGA+AGG 0.508593 5_1:-59446532 Msa0740500:CDS
CAAAAGACGTAGACAAAACC+AGG 0.509793 5_1:+59443955 None:intergenic
GCCGGATTCAATCCCTGAGC+CGG 0.510375 5_1:+59446234 None:intergenic
CTTATTAAAGCAAAACAGAA+AGG 0.510779 5_1:+59444230 None:intergenic
GACAAAGCCTGTCCAAGAGC+CGG 0.512535 5_1:+59446216 None:intergenic
GAGGAATGATTTCAAAAGAC+AGG 0.513742 5_1:+59444454 None:intergenic
TAGCTTCATAAAGCATGACT+TGG 0.514787 5_1:-59444803 Msa0740500:three_prime_UTR
TAAGGAGCGCCACCGGGACC+AGG 0.518273 5_1:+59445997 None:intergenic
ATATCATCTGCATCCACTGA+TGG 0.518460 5_1:-59444061 Msa0740500:three_prime_UTR
TCGGCTACTTCTTCTTGTTG+GGG 0.518576 5_1:+59447401 None:intergenic
TAAACATTCAAATGATAGAC+GGG 0.518789 5_1:+59444594 None:intergenic
GGATGATGGTCCATTGGGGT+TGG 0.519268 5_1:-59446601 Msa0740500:CDS
TTGGGGTTGGATAAGGCGAC+TGG 0.520918 5_1:-59446588 Msa0740500:CDS
AGCAGCCGCAGAAAGTGATT+GGG 0.521007 5_1:-59446791 Msa0740500:CDS
TTCAAACAACGCTGCCGTGT+CGG 0.523374 5_1:-59447204 Msa0740500:CDS
TGATTACCATACGCAGCAGC+AGG 0.524463 5_1:+59446105 None:intergenic
CCCGGTGGCGCTCCTTACAT+GGG 0.525317 5_1:-59445991 Msa0740500:CDS
GGTGTGATTGATATGCTGTT+AGG 0.526065 5_1:+59444162 None:intergenic
GTTAGACCTCATCCTGGTCC+CGG 0.526551 5_1:-59446009 Msa0740500:CDS
AACGCCGGTGTGCCGGCTCA+GGG 0.526695 5_1:-59446246 Msa0740500:CDS
AGGCTAAAAGTGGCCACACT+TGG 0.527528 5_1:-59444012 Msa0740500:three_prime_UTR
CATCACCATCACGGTGGTGG+TGG 0.527530 5_1:-59446375 Msa0740500:CDS
TATGGTAATCAGGCTGCTAT+GGG 0.529499 5_1:-59446093 Msa0740500:CDS
AGCTGAGGATTCTGGTATTG+TGG 0.529596 5_1:+59446048 None:intergenic
GTGTTTATGCATGTCATAAA+GGG 0.530906 5_1:+59443114 None:intergenic
GGTCCTCCTGCTGCTGCGTA+TGG 0.531826 5_1:-59446111 Msa0740500:CDS
AGGTGAAGAAGAGCAAGAAG+AGG 0.532986 5_1:-59447309 Msa0740500:CDS
CCAACATTCAAAACATTCCT+CGG 0.533124 5_1:+59444915 None:intergenic
TGGAGGTCTTGGTGGTGCGC+CGG 0.533288 5_1:-59446145 Msa0740500:CDS
AAAGATCAAAACCTCTATTG+AGG 0.533772 5_1:+59444348 None:intergenic
AGATGCATTTGAATAGGGCC+TGG 0.535470 5_1:+59445074 None:intergenic
CTTTGAGTATACTCAGACAC+CGG 0.535878 5_1:+59446702 None:intergenic
CAATAACAACGAAGAACAAG+AGG 0.537174 5_1:-59447141 Msa0740500:CDS
TTTCAAGCAGTTTGGAGAGG+TGG 0.539323 5_1:-59446622 Msa0740500:CDS
CATCCTGCTATTCACTTCCA+AGG 0.540009 5_1:-59444032 Msa0740500:three_prime_UTR
CCCATGTAAGGAGCGCCACC+GGG 0.540286 5_1:+59445991 None:intergenic
CAGTTTGGAGAGGTGGATGA+TGG 0.542414 5_1:-59446615 Msa0740500:CDS
AGGGCTGGATTTGTGAAGGT+GGG 0.543044 5_1:+59444298 None:intergenic
TGTTCGTCAGCTGGCTGATG+TGG 0.543983 5_1:-59447003 Msa0740500:CDS
CACTGCATGCAAGTGTACCC+TGG 0.544192 5_1:-59443973 Msa0740500:three_prime_UTR
TGAAGAAGAGCAAGAAGAGG+AGG 0.546641 5_1:-59447306 Msa0740500:CDS
CTAGACCTTCAACATTAAGA+AGG 0.548281 5_1:-59443342 Msa0740500:three_prime_UTR
GCTGATTCTTCTGAAGTACC+AGG 0.551534 5_1:-59445092 Msa0740500:three_prime_UTR
TTGGTGAAAGAGAGAGAAAG+GGG 0.552701 5_1:+59447519 None:intergenic
TTGTTCCTTTGTGGAATCCG+AGG 0.554532 5_1:-59444932 Msa0740500:three_prime_UTR
GACACCGGTGGCGCATTCGG+TGG 0.554738 5_1:+59446717 None:intergenic
ATAAACATTCAAATGATAGA+CGG 0.554862 5_1:+59444593 None:intergenic
TGAAGTTCGTAAGCCCAACT+TGG 0.557288 5_1:+59443815 None:intergenic
GAGCCGAATAAGGTGTTCGA+GGG 0.557980 5_1:-59446501 Msa0740500:CDS
TTCACTTCCAAGGCTAAAAG+TGG 0.558951 5_1:-59444022 Msa0740500:three_prime_UTR
TCTTTAACTATTGACTGTCT+GGG 0.561967 5_1:-59443909 Msa0740500:three_prime_UTR
TTAAAGAAAAGAATACATCA+TGG 0.564232 5_1:-59444684 Msa0740500:three_prime_UTR
CTATTCCCAATCACTTTCTG+CGG 0.566327 5_1:+59446786 None:intergenic
TGAGAGTGCTAAGAAGGCGT+TGG 0.568548 5_1:-59446526 Msa0740500:CDS
ATTGATCAGACTGCTTGAGA+AGG 0.569516 5_1:-59443407 Msa0740500:three_prime_UTR
GCTCCTACTGGTCCTGCTGG+TGG 0.571468 5_1:-59446276 Msa0740500:CDS
ATCAAAACCTCTATTGAGGA+AGG 0.571566 5_1:+59444352 None:intergenic
GCATACTTTGTATTGTCAGA+AGG 0.572781 5_1:-59446478 Msa0740500:CDS
TGGTCCTAAGGGTTACAACA+AGG 0.573830 5_1:-59446448 Msa0740500:CDS
CAGAATCCTCAGCTGGGTCA+AGG 0.575625 5_1:-59446039 Msa0740500:CDS
CCTAGAAAATCAACAACAAG+AGG 0.576213 5_1:-59447240 Msa0740500:CDS
GGTGGTGTTAGACCTCATCC+TGG 0.576645 5_1:-59446015 Msa0740500:CDS
TAAAGAAAAGAATACATCAT+GGG 0.580158 5_1:-59444683 Msa0740500:three_prime_UTR
AAGGCGACTGGGAAGCCAAA+GGG 0.581826 5_1:-59446576 Msa0740500:CDS
GGTGGTGGTGGCCCATCACA+CGG 0.582405 5_1:-59446312 Msa0740500:CDS
GCGTTGTAACCACCACCAGC+AGG 0.582900 5_1:+59446264 None:intergenic
GACAGTCAATAGTTAAAGAG+AGG 0.583998 5_1:+59443913 None:intergenic
CATCATCACCATCACGGTGG+TGG 0.584236 5_1:-59446378 Msa0740500:CDS
AGAGCCGAATAAGGTGTTCG+AGG 0.585996 5_1:-59446502 Msa0740500:CDS
GAAGGATTCCATCTTTGATG+TGG 0.586790 5_1:-59443389 Msa0740500:three_prime_UTR
AAGAATTCTGGGAAATCGAA+AGG 0.586836 5_1:-59446864 Msa0740500:CDS
AAGGCTGTTGATGGTCCTAA+GGG 0.587938 5_1:-59446459 Msa0740500:CDS
GGTGCGCCGGTGAATCAAGC+TGG 0.587980 5_1:-59446132 Msa0740500:CDS
GTCGGAGCAGACTGTGAAGG+TGG 0.597030 5_1:-59447186 Msa0740500:CDS
GTCCTAAGGGTTACAACAAG+GGG 0.599613 5_1:-59446446 Msa0740500:CDS
AGGTGGATGATGGTCCATTG+GGG 0.599675 5_1:-59446605 Msa0740500:CDS
GGATTCCATCTTTGATGTGG+CGG 0.600586 5_1:-59443386 Msa0740500:three_prime_UTR
GGTCCTAAGGGTTACAACAA+GGG 0.601882 5_1:-59446447 Msa0740500:CDS
AAGAAGTATTCACATGGTGG+TGG 0.603956 5_1:-59446327 Msa0740500:CDS
AAAGAGGGCTGGATTTGTGA+AGG 0.606765 5_1:+59444294 None:intergenic
CAATCCCTGAGCCGGCACAC+CGG 0.607582 5_1:+59446242 None:intergenic
AGGTTGATCTTCTTCAATCG+GGG 0.608027 5_1:+59447346 None:intergenic
AATGTTTGATGCATCTATGA+GGG 0.609620 5_1:+59445129 None:intergenic
GTCTAGGTTCAGTTTCATGT+CGG 0.611838 5_1:+59443359 None:intergenic
TGGGGTTGGATAAGGCGACT+GGG 0.613826 5_1:-59446587 Msa0740500:CDS
GTCGCCTTATCCAACCCCAA+TGG 0.615111 5_1:+59446591 None:intergenic
CGTGTCGGAGCAGACTGTGA+AGG 0.617761 5_1:-59447189 Msa0740500:CDS
CTTTCGTTTCTTGGCCATGG+CGG 0.619617 5_1:+59447469 None:intergenic
ACACGTGCTTGTGAAGCAAG+CGG 0.622021 5_1:-59447054 Msa0740500:CDS
CAACCTCAAAACGAAGGAGA+AGG 0.623160 5_1:-59447329 Msa0740500:CDS
AAGGTGGAAGCTAACGGTGG+TGG 0.624235 5_1:-59447170 Msa0740500:CDS
TAAGGCGACTGGGAAGCCAA+AGG 0.624508 5_1:-59446577 Msa0740500:CDS
CCACCACCAGCAGGACCAGT+AGG 0.625255 5_1:+59446273 None:intergenic
GTGGTGGTCACTACAATCCA+AGG 0.627985 5_1:-59446356 Msa0740500:CDS
GCTGGTGGTGGTTACAACGC+CGG 0.630397 5_1:-59446261 Msa0740500:CDS
CAGGATGCAAGCTCCATCAG+TGG 0.630450 5_1:+59444048 None:intergenic
TCTCGATTCAATCACCGCCA+TGG 0.631640 5_1:-59447483 Msa0740500:exon
TAAAAGTGGCCACACTTGGT+GGG 0.632583 5_1:-59444008 Msa0740500:three_prime_UTR
GCATTACCACCCACCAAGTG+TGG 0.640387 5_1:+59443999 None:intergenic
AATCAACAACAAGAGGGTGG+CGG 0.641401 5_1:-59447233 Msa0740500:CDS
GAAGATCAACCTCAAAACGA+AGG 0.642987 5_1:-59447335 Msa0740500:CDS
TTCACCGTACTTCGAAAACG+TGG 0.643668 5_1:+59446914 None:intergenic
GGATTCCACAAAGGAACAAG+AGG 0.648773 5_1:+59444936 None:intergenic
CAATACCAGAATCCTCAGCT+GGG 0.650944 5_1:-59446045 Msa0740500:CDS
CGGTGTCTGAGTATACTCAA+AGG 0.652912 5_1:-59446701 Msa0740500:CDS
AAGTGGCCACACTTGGTGGG+TGG 0.658866 5_1:-59444005 Msa0740500:three_prime_UTR
AGACCTCATCCTGGTCCCGG+TGG 0.660243 5_1:-59446006 Msa0740500:CDS
CCACCACCTTGACCCAGCTG+AGG 0.661990 5_1:+59446033 None:intergenic
CATTCGCATCATCACCATCA+CGG 0.665008 5_1:-59446384 Msa0740500:CDS
GAAAAGAAGTATTCACATGG+TGG 0.667361 5_1:-59446330 Msa0740500:CDS
ACCGTACTTCGAAAACGTGG+TGG 0.667699 5_1:+59446917 None:intergenic
AATCCTCAGCTGGGTCAAGG+TGG 0.672405 5_1:-59446036 Msa0740500:CDS
GCAGATTCTATCATGTTATG+CGG 0.672427 5_1:+59444093 None:intergenic
ACATTCCTCGGATTCCACAA+AGG 0.672969 5_1:+59444927 None:intergenic
TATGTATCCCTACCAAAATG+GGG 0.674547 5_1:+59443072 None:intergenic
GAAAATCAACAACAAGAGGG+TGG 0.674797 5_1:-59447236 Msa0740500:CDS
TTACCATACGCAGCAGCAGG+AGG 0.677100 5_1:+59446108 None:intergenic
ACTGTGAAGGTGGAAGCTAA+CGG 0.678694 5_1:-59447176 Msa0740500:CDS
CTTCACAGTCTGCTCCGACA+CGG 0.679380 5_1:+59447190 None:intergenic
AGCCGAATAAGGTGTTCGAG+GGG 0.683238 5_1:-59446500 Msa0740500:CDS
CTAGAAAATCAACAACAAGA+GGG 0.690323 5_1:-59447239 Msa0740500:CDS
TGGTGATGATGCGAATGATG+CGG 0.691685 5_1:+59446390 None:intergenic
GATGAAGAGGATGATCAACA+AGG 0.691927 5_1:-59447275 Msa0740500:CDS
TGAGTATACTCAGACACCGG+TGG 0.708396 5_1:+59446705 None:intergenic
AAAGAAAAGAAGTATTCACA+TGG 0.713599 5_1:-59446333 Msa0740500:CDS
GCTTCTAGAACCATTCACGA+AGG 0.714086 5_1:-59447084 Msa0740500:CDS
TCCTAAGGGTTACAACAAGG+GGG 0.727464 5_1:-59446445 Msa0740500:CDS
CCTAAGGGTTACAACAAGGG+GGG 0.736362 5_1:-59446444 Msa0740500:CDS
GGTGGTGGCCCATCACACGG+TGG 0.744986 5_1:-59446309 Msa0740500:CDS
CATGCATAAACACAGCTATG+CGG 0.751953 5_1:-59443104 Msa0740500:three_prime_UTR
AAAAGACGTAGACAAAACCA+GGG 0.754067 5_1:+59443956 None:intergenic
TCGCATCATCACCATCACGG+TGG 0.781979 5_1:-59446381 Msa0740500:CDS
GTGAAGGTGGAAGCTAACGG+TGG 0.792915 5_1:-59447173 Msa0740500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTACTTTTATTATGTT+AGG - chr5_1:59445107-59445126 Msa0740500:three_prime_UTR 10.0%
!!! TGTAATTTTAAATTACTATT+TGG - chr5_1:59445518-59445537 Msa0740500:intron 10.0%
!! CTAATATAAATAACATGAAT+TGG + chr5_1:59444656-59444675 None:intergenic 15.0%
!! AGTTGTTTATTCAATAAAAA+AGG + chr5_1:59445274-59445293 None:intergenic 15.0%
!! TACATGATTTAAAAAAAAGT+CGG + chr5_1:59445602-59445621 None:intergenic 15.0%
!!! AATTACTTTTCTTACATTTT+TGG - chr5_1:59446021-59446040 Msa0740500:CDS 15.0%
!!! ATTACTTTTCTTACATTTTT+GGG - chr5_1:59446022-59446041 Msa0740500:CDS 15.0%
!!! GTACAAAGATAATATTTTTA+AGG + chr5_1:59446958-59446977 None:intergenic 15.0%
!!! CATTTTAAAATGTTTGTATA+TGG + chr5_1:59447090-59447109 None:intergenic 15.0%
!!! TGAATTTTGTATAGTAATTT+CGG - chr5_1:59447321-59447340 Msa0740500:CDS 15.0%
!!! CTTTTATTTTGTTTAAGCAT+CGG - chr5_1:59443725-59443744 Msa0740500:three_prime_UTR 20.0%
!! TATATTAGAAATGTTTGTGA+AGG - chr5_1:59444668-59444687 Msa0740500:three_prime_UTR 20.0%
!! ATATTAGAAATGTTTGTGAA+GGG - chr5_1:59444669-59444688 Msa0740500:three_prime_UTR 20.0%
!! TGTAAAATCTTTAATTGTGT+CGG - chr5_1:59444757-59444776 Msa0740500:three_prime_UTR 20.0%
!! TATGACAATAGATGTTAAAA+GGG + chr5_1:59445251-59445270 None:intergenic 20.0%
!! TTAAAAGATGCATTTGAATA+GGG + chr5_1:59445495-59445514 None:intergenic 20.0%
!! TTTAAAAGATGCATTTGAAT+AGG + chr5_1:59445496-59445515 None:intergenic 20.0%
!! ACATGATTTAAAAAAAAGTC+GGG + chr5_1:59445601-59445620 None:intergenic 20.0%
!! TAGAAATCCAGATAAATATA+AGG + chr5_1:59445716-59445735 None:intergenic 20.0%
!! ATTATACTTTGTTAAAAAGC+TGG + chr5_1:59445844-59445863 None:intergenic 20.0%
!! TTAAAGAAAAGAATACATCA+TGG - chr5_1:59445877-59445896 Msa0740500:intron 20.0%
!! TAAAGAAAAGAATACATCAT+GGG - chr5_1:59445878-59445897 Msa0740500:intron 20.0%
!! ATAAACATTCAAATGATAGA+CGG + chr5_1:59445971-59445990 None:intergenic 20.0%
!!! ATTTGAATGTTTATTTCTTC+TGG - chr5_1:59445977-59445996 Msa0740500:intron 20.0%
!!! TTTGAATGTTTATTTCTTCT+GGG - chr5_1:59445978-59445997 Msa0740500:intron 20.0%
!! ATAAAATGATAAATGCCTTA+TGG + chr5_1:59446240-59446259 None:intergenic 20.0%
!! AAAAATAGAGATCATACATT+AGG - chr5_1:59447128-59447147 Msa0740500:CDS 20.0%
!! AAAATAGAGATCATACATTA+GGG - chr5_1:59447129-59447148 Msa0740500:CDS 20.0%
!!! AAAGAAAAGAAGTATTCACA+TGG - chr5_1:59444228-59444247 Msa0740500:three_prime_UTR 25.0%
! GTATAAACACTAATGAATGA+AGG + chr5_1:59444627-59444646 None:intergenic 25.0%
! GTAAAATCTTTAATTGTGTC+GGG - chr5_1:59444758-59444777 Msa0740500:three_prime_UTR 25.0%
! AAAATGAATGCAAATACACT+TGG + chr5_1:59444799-59444818 None:intergenic 25.0%
! GTAATCAGTTTACTAAAACA+TGG - chr5_1:59444886-59444905 Msa0740500:three_prime_UTR 25.0%
! GTATGACAATAGATGTTAAA+AGG + chr5_1:59445252-59445271 None:intergenic 25.0%
! AAACAACTTATAACTATGCT+TGG - chr5_1:59445286-59445305 Msa0740500:intron 25.0%
!!! ATGCATCAAACATTTTGTTT+TGG - chr5_1:59445441-59445460 Msa0740500:intron 25.0%
!! TCATTTGACTTTGATTTATG+AGG - chr5_1:59445814-59445833 Msa0740500:intron 25.0%
!!! CTGGTTATTTTTTATGCTTA+TGG - chr5_1:59445913-59445932 Msa0740500:intron 25.0%
! TAAACATTCAAATGATAGAC+GGG + chr5_1:59445970-59445989 None:intergenic 25.0%
! CATTGAATACCTAAAAAAGA+GGG + chr5_1:59446285-59446304 None:intergenic 25.0%
! ACATTGAATACCTAAAAAAG+AGG + chr5_1:59446286-59446305 None:intergenic 25.0%
! CAAAACAGAAAGGAAAAAAT+AGG + chr5_1:59446324-59446343 None:intergenic 25.0%
! CTTATTAAAGCAAAACAGAA+AGG + chr5_1:59446334-59446353 None:intergenic 25.0%
!!! TTGTTTTTTGACAGTCTTTT+TGG - chr5_1:59446785-59446804 Msa0740500:CDS 25.0%
!! TTGCTCGATTTATATCTTTT+TGG - chr5_1:59446820-59446839 Msa0740500:CDS 25.0%
! ATCTTTGTACAATGTCAAAA+TGG - chr5_1:59446968-59446987 Msa0740500:CDS 25.0%
!! GAAGGGTTAATATTTTATTC+CGG - chr5_1:59447008-59447027 Msa0740500:CDS 25.0%
! TTTATTCCGGTATCTATATT+TGG - chr5_1:59447021-59447040 Msa0740500:CDS 25.0%
! TTATTCCGGTATCTATATTT+GGG - chr5_1:59447022-59447041 Msa0740500:CDS 25.0%
! TATTACCTTCTTAATGTTGA+AGG + chr5_1:59447227-59447246 None:intergenic 25.0%
! CAACATTAAGAAGGTAATAT+TGG - chr5_1:59447228-59447247 Msa0740500:CDS 25.0%
! TTTGTATAGTAATTTCGGAT+TGG - chr5_1:59447326-59447345 Msa0740500:CDS 25.0%
! TTGTATAGTAATTTCGGATT+GGG - chr5_1:59447327-59447346 Msa0740500:CDS 25.0%
! ATAATGTTCACCAAAAAAGA+AGG - chr5_1:59447403-59447422 Msa0740500:CDS 25.0%
!! AGTTGTTTCAAAGAAAAGTT+GGG + chr5_1:59447550-59447569 None:intergenic 25.0%
!! TAGTTGTTTCAAAGAAAAGT+TGG + chr5_1:59447551-59447570 None:intergenic 25.0%
ATTTCTTCTTCTTGTGTTGT+TGG + chr5_1:59443193-59443212 None:intergenic 30.0%
!!! CTCTTGTTGTTGATTTTCTA+GGG + chr5_1:59443323-59443342 None:intergenic 30.0%
CTAGAAAATCAACAACAAGA+GGG - chr5_1:59443322-59443341 Msa0740500:three_prime_UTR 30.0%
AAAATCTTTGTTCATGGTCT+TGG - chr5_1:59443595-59443614 Msa0740500:three_prime_UTR 30.0%
! GAATACTTCTTTTCTTTCCT+TGG + chr5_1:59444225-59444244 None:intergenic 30.0%
!!! ATACAACGATCTTTTTTCGT+TGG + chr5_1:59444842-59444861 None:intergenic 30.0%
AAGATCGTTGTATACTTTGT+TGG - chr5_1:59444849-59444868 Msa0740500:three_prime_UTR 30.0%
!!! GTTCCTTGTTTTGGTTATTA+AGG - chr5_1:59444913-59444932 Msa0740500:three_prime_UTR 30.0%
! TAGCCTTAATAACCAAAACA+AGG + chr5_1:59444919-59444938 None:intergenic 30.0%
! GGAATTGTTTGAAACAACTA+CGG - chr5_1:59445307-59445326 Msa0740500:intron 30.0%
AATGTTTGATGCATCTATGA+GGG + chr5_1:59445435-59445454 None:intergenic 30.0%
AAATGTTTGATGCATCTATG+AGG + chr5_1:59445436-59445455 None:intergenic 30.0%
CTATTTGGTTACTAAAGAAC+CGG - chr5_1:59445533-59445552 Msa0740500:intron 30.0%
AAAATACAGGTTTCAGAATC+CGG + chr5_1:59445555-59445574 None:intergenic 30.0%
CTACGATAGAAAGAAAATAC+AGG + chr5_1:59445568-59445587 None:intergenic 30.0%
CTGTAGACCTTATATTTATC+TGG - chr5_1:59445706-59445725 Msa0740500:intron 30.0%
!!! TTTCTTACATTTTTGGGTTG+TGG - chr5_1:59446028-59446047 Msa0740500:CDS 30.0%
! GCTTTTAACAACGAAAAATG+AGG + chr5_1:59446129-59446148 None:intergenic 30.0%
AAAGATCAAAACCTCTATTG+AGG + chr5_1:59446216-59446235 None:intergenic 30.0%
!! AGGTTTTGATCTTTACCATA+AGG - chr5_1:59446222-59446241 Msa0740500:CDS 30.0%
! AACTTTGTTTAGCAAGTGTT+AGG - chr5_1:59446372-59446391 Msa0740500:CDS 30.0%
CTTCGCAAGCAAATAAAATA+TGG + chr5_1:59446423-59446442 None:intergenic 30.0%
!! ATTTTATTTGCTTGCGAAGT+TGG - chr5_1:59446424-59446443 Msa0740500:CDS 30.0%
! TCTTTAACTATTGACTGTCT+GGG - chr5_1:59446652-59446671 Msa0740500:CDS 30.0%
GAGATTCTGTAAGTTAAAGA+AGG + chr5_1:59446694-59446713 None:intergenic 30.0%
! TTTTAAGCTGTACATCAGAA+GGG - chr5_1:59446991-59447010 Msa0740500:CDS 30.0%
TTGGGTCAAGTATCTATATT+TGG - chr5_1:59447040-59447059 Msa0740500:CDS 30.0%
TGGGTCAAGTATCTATATTT+GGG - chr5_1:59447041-59447060 Msa0740500:CDS 30.0%
TGGTGAACATTATATTTCTC+TGG + chr5_1:59447396-59447415 None:intergenic 30.0%
GTGTTTATGCATGTCATAAA+GGG + chr5_1:59447450-59447469 None:intergenic 30.0%
TGTGTTTATGCATGTCATAA+AGG + chr5_1:59447451-59447470 None:intergenic 30.0%
ATATGTATCCCTACCAAAAT+GGG + chr5_1:59447493-59447512 None:intergenic 30.0%
!!! TATGCATCCCCAATTTTTTT+TGG - chr5_1:59447510-59447529 Msa0740500:five_prime_UTR 30.0%
!!! ATGCATCCCCAATTTTTTTT+GGG - chr5_1:59447511-59447530 Msa0740500:five_prime_UTR 30.0%
TCTGTACCCAAAAAAAATTG+GGG + chr5_1:59447520-59447539 None:intergenic 30.0%
CTCTGTACCCAAAAAAAATT+GGG + chr5_1:59447521-59447540 None:intergenic 30.0%
TTTGGTGAAAGAGAGAGAAA+GGG + chr5_1:59443046-59443065 None:intergenic 35.0%
TTGAATCGAGATTAGGGTTA+GGG + chr5_1:59443069-59443088 None:intergenic 35.0%
ATTGAATCGAGATTAGGGTT+AGG + chr5_1:59443070-59443089 None:intergenic 35.0%
!! TTGTGTTGTTGGTTCTTCTT+CGG + chr5_1:59443182-59443201 None:intergenic 35.0%
! TGAGGTTGATCTTCTTCAAT+CGG + chr5_1:59443220-59443239 None:intergenic 35.0%
!!! CCTCTTGTTGTTGATTTTCT+AGG + chr5_1:59443324-59443343 None:intergenic 35.0%
CCTAGAAAATCAACAACAAG+AGG - chr5_1:59443321-59443340 Msa0740500:three_prime_UTR 35.0%
CAATAACAACGAAGAACAAG+AGG - chr5_1:59443420-59443439 Msa0740500:three_prime_UTR 35.0%
ACAAGAGGAAGATCTTGAAT+TGG - chr5_1:59443435-59443454 Msa0740500:three_prime_UTR 35.0%
! GACCATGAACAAAGATTTTC+CGG + chr5_1:59443594-59443613 None:intergenic 35.0%
CGGTGAAATTGAAGATTGTA+AGG - chr5_1:59443663-59443682 Msa0740500:three_prime_UTR 35.0%
CTGTGACTGATAAGAATTCT+GGG - chr5_1:59443686-59443705 Msa0740500:three_prime_UTR 35.0%
! AAGAATTCTGGGAAATCGAA+AGG - chr5_1:59443697-59443716 Msa0740500:three_prime_UTR 35.0%
!!! ATTTTGTTTAAGCATCGGAC+TGG - chr5_1:59443730-59443749 Msa0740500:three_prime_UTR 35.0%
!!! TTTTGTTTAAGCATCGGACT+GGG - chr5_1:59443731-59443750 Msa0740500:three_prime_UTR 35.0%
!!! CTTGAGTTTTTCAAGCAGTT+TGG - chr5_1:59443931-59443950 Msa0740500:three_prime_UTR 35.0%
TGCGCTGTTTGTTTATAAGA+CGG - chr5_1:59444011-59444030 Msa0740500:three_prime_UTR 35.0%
GCATACTTTGTATTGTCAGA+AGG - chr5_1:59444083-59444102 Msa0740500:three_prime_UTR 35.0%
!! GAAAAGAAGTATTCACATGG+TGG - chr5_1:59444231-59444250 Msa0740500:three_prime_UTR 35.0%
AGAAATGTTTGTGAAGGGTT+AGG - chr5_1:59444674-59444693 Msa0740500:three_prime_UTR 35.0%
GATTGTTGAACTTGTCTAGT+TGG - chr5_1:59444708-59444727 Msa0740500:three_prime_UTR 35.0%
!! TGAACTTGTCTAGTTGGTTT+TGG - chr5_1:59444714-59444733 Msa0740500:three_prime_UTR 35.0%
TAGCTGTAACATCCAAAACA+AGG + chr5_1:59445004-59445023 None:intergenic 35.0%
! AATCTATTTTGCAGCATCAG+AGG - chr5_1:59445338-59445357 Msa0740500:intron 35.0%
CCAACATTCAAAACATTCCT+CGG + chr5_1:59445649-59445668 None:intergenic 35.0%
!! CGAGGAATGTTTTGAATGTT+GGG - chr5_1:59445647-59445666 Msa0740500:intron 35.0%
!! GAGGAATGTTTTGAATGTTG+GGG - chr5_1:59445648-59445667 Msa0740500:intron 35.0%
TAGCTTCATAAAGCATGACT+TGG - chr5_1:59445758-59445777 Msa0740500:intron 35.0%
! AATACATCATGGGAGTTTTG+TGG - chr5_1:59445888-59445907 Msa0740500:intron 35.0%
!! TTTGGGTTGTGGATTTAGAA+TGG - chr5_1:59446039-59446058 Msa0740500:CDS 35.0%
GAGGAATGATTTCAAAAGAC+AGG + chr5_1:59446110-59446129 None:intergenic 35.0%
TGAGGAAGGTGAAAGAAAAA+TGG + chr5_1:59446198-59446217 None:intergenic 35.0%
ATCAAAACCTCTATTGAGGA+AGG + chr5_1:59446212-59446231 None:intergenic 35.0%
GAAAGGAAAAAATAGGCACT+AGG + chr5_1:59446317-59446336 None:intergenic 35.0%
GCAGATTCTATCATGTTATG+CGG + chr5_1:59446471-59446490 None:intergenic 35.0%
AAAAGACGTAGACAAAACCA+GGG + chr5_1:59446608-59446627 None:intergenic 35.0%
!!! TACGTCTTTTGAGTTCATGA+TGG - chr5_1:59446618-59446637 Msa0740500:CDS 35.0%
!!! ACGTCTTTTGAGTTCATGAT+GGG - chr5_1:59446619-59446638 Msa0740500:CDS 35.0%
GACAGTCAATAGTTAAAGAG+AGG + chr5_1:59446651-59446670 None:intergenic 35.0%
! CTCTTTAACTATTGACTGTC+TGG - chr5_1:59446651-59446670 Msa0740500:CDS 35.0%
!! GTTTTAAGCTGTACATCAGA+AGG - chr5_1:59446990-59447009 Msa0740500:CDS 35.0%
CTTGACCCAAATATAGATAC+CGG + chr5_1:59447030-59447049 None:intergenic 35.0%
CTTCTTAATGTTGAAGGTCT+AGG + chr5_1:59447221-59447240 None:intergenic 35.0%
CTAGACCTTCAACATTAAGA+AGG - chr5_1:59447219-59447238 Msa0740500:CDS 35.0%
!!! CCACAATCAACCTTCTTTTT+TGG + chr5_1:59447416-59447435 None:intergenic 35.0%
! CCAAAAAAGAAGGTTGATTG+TGG - chr5_1:59447413-59447432 Msa0740500:CDS 35.0%
! AAAGAAGGTTGATTGTGGTT+TGG - chr5_1:59447418-59447437 Msa0740500:CDS 35.0%
!! ATAGTATCCCCATTTTGGTA+GGG - chr5_1:59447482-59447501 Msa0740500:exon 35.0%
TATGTATCCCTACCAAAATG+GGG + chr5_1:59447492-59447511 None:intergenic 35.0%
CATATGTATCCCTACCAAAA+TGG + chr5_1:59447494-59447513 None:intergenic 35.0%
GCTCTGTACCCAAAAAAAAT+TGG + chr5_1:59447522-59447541 None:intergenic 35.0%
GAGAGAAAGGGGAAAATTAG+TGG + chr5_1:59443034-59443053 None:intergenic 40.0%
TTGGTGAAAGAGAGAGAAAG+GGG + chr5_1:59443045-59443064 None:intergenic 40.0%
! GTTTGGTGAAAGAGAGAGAA+AGG + chr5_1:59443047-59443066 None:intergenic 40.0%
CGGTGATTGAATCGAGATTA+GGG + chr5_1:59443075-59443094 None:intergenic 40.0%
AGATCGAAGCTTTCGTTTCT+TGG + chr5_1:59443104-59443123 None:intergenic 40.0%
TACTTCTTCTTGTTGGGGTT+CGG + chr5_1:59443158-59443177 None:intergenic 40.0%
TTCGGCTACTTCTTCTTGTT+GGG + chr5_1:59443164-59443183 None:intergenic 40.0%
! AGGTTGATCTTCTTCAATCG+GGG + chr5_1:59443218-59443237 None:intergenic 40.0%
! GAGGTTGATCTTCTTCAATC+GGG + chr5_1:59443219-59443238 None:intergenic 40.0%
GAAGATCAACCTCAAAACGA+AGG - chr5_1:59443226-59443245 Msa0740500:three_prime_UTR 40.0%
GATGAAGAGGATGATCAACA+AGG - chr5_1:59443286-59443305 Msa0740500:three_prime_UTR 40.0%
GAAAATCAACAACAAGAGGG+TGG - chr5_1:59443325-59443344 Msa0740500:three_prime_UTR 40.0%
TGTAATTGCTCCTTCGTGAA+TGG + chr5_1:59443490-59443509 None:intergenic 40.0%
! AACAAAGATTTTCCGGTGAG+CGG + chr5_1:59443587-59443606 None:intergenic 40.0%
CACCGGAAAATCTTTGTTCA+TGG - chr5_1:59443589-59443608 Msa0740500:three_prime_UTR 40.0%
! TCTTTGTTCATGGTCTTGGT+TGG - chr5_1:59443599-59443618 Msa0740500:three_prime_UTR 40.0%
! CTTTGTTCATGGTCTTGGTT+GGG - chr5_1:59443600-59443619 Msa0740500:three_prime_UTR 40.0%
GCTGTGACTGATAAGAATTC+TGG - chr5_1:59443685-59443704 Msa0740500:three_prime_UTR 40.0%
CTATTCCCAATCACTTTCTG+CGG + chr5_1:59443778-59443797 None:intergenic 40.0%
TAGGACTACATCGTGTCAAT+TGG - chr5_1:59443795-59443814 Msa0740500:three_prime_UTR 40.0%
! TACATCGTGTCAATTGGCTT+CGG - chr5_1:59443801-59443820 Msa0740500:three_prime_UTR 40.0%
CTTTGAGTATACTCAGACAC+CGG + chr5_1:59443862-59443881 None:intergenic 40.0%
AAAAACTCAAGCAGCTTCTG+AGG + chr5_1:59443922-59443941 None:intergenic 40.0%
!!! GTTTTTCAAGCAGTTTGGAG+AGG - chr5_1:59443936-59443955 Msa0740500:three_prime_UTR 40.0%
TATTGTCAGAAGGCTGTTGA+TGG - chr5_1:59444093-59444112 Msa0740500:three_prime_UTR 40.0%
!! AAGAAGTATTCACATGGTGG+TGG - chr5_1:59444234-59444253 Msa0740500:three_prime_UTR 40.0%
! TCTGCTTTGCTTGCTAATCA+AGG - chr5_1:59444366-59444385 Msa0740500:three_prime_UTR 40.0%
TATGGTAATCAGGCTGCTAT+GGG - chr5_1:59444468-59444487 Msa0740500:three_prime_UTR 40.0%
CAAAACAAGGAACAAAGCCA+AGG + chr5_1:59444991-59445010 None:intergenic 40.0%
!!! CTTGGCTTTGTTCCTTGTTT+TGG - chr5_1:59444989-59445008 Msa0740500:three_prime_UTR 40.0%
TAGTACCTCTTGTTCCTTTG+TGG - chr5_1:59445620-59445639 Msa0740500:intron 40.0%
!! CCGAGGAATGTTTTGAATGT+TGG - chr5_1:59445646-59445665 Msa0740500:intron 40.0%
TATTCAACAACGACGAGCTT+TGG - chr5_1:59446159-59446178 Msa0740500:CDS 40.0%
TCTTTCACCTTCCTCAATAG+AGG - chr5_1:59446202-59446221 Msa0740500:CDS 40.0%
!!! CAAATCCAGCCCTCTTTTTT+AGG - chr5_1:59446273-59446292 Msa0740500:CDS 40.0%
GAATACCTAAAAAAGAGGGC+TGG + chr5_1:59446281-59446300 None:intergenic 40.0%
GGTGTGATTGATATGCTGTT+AGG + chr5_1:59446402-59446421 None:intergenic 40.0%
ATATCATCTGCATCCACTGA+TGG - chr5_1:59446500-59446519 Msa0740500:CDS 40.0%
TTCACTTCCAAGGCTAAAAG+TGG - chr5_1:59446539-59446558 Msa0740500:CDS 40.0%
CAAAAGACGTAGACAAAACC+AGG + chr5_1:59446609-59446628 None:intergenic 40.0%
ATTGACTGTCTGGGAAAGTT+CGG - chr5_1:59446661-59446680 Msa0740500:CDS 40.0%
TTCTTCAACTGTCACCAAGT+TGG - chr5_1:59446732-59446751 Msa0740500:CDS 40.0%
TCTTCAACTGTCACCAAGTT+GGG - chr5_1:59446733-59446752 Msa0740500:CDS 40.0%
ATTGATCAGACTGCTTGAGA+AGG - chr5_1:59447154-59447173 Msa0740500:CDS 40.0%
GAAGGATTCCATCTTTGATG+TGG - chr5_1:59447172-59447191 Msa0740500:CDS 40.0%
GTCTAGGTTCAGTTTCATGT+CGG + chr5_1:59447205-59447224 None:intergenic 40.0%
ATATCTTTGTGTCAGCTTCG+TGG + chr5_1:59447273-59447292 None:intergenic 40.0%
! GTAATTTCGGATTGGGTTCT+TGG - chr5_1:59447334-59447353 Msa0740500:CDS 40.0%
CATGCATAAACACAGCTATG+CGG - chr5_1:59447457-59447476 Msa0740500:CDS 40.0%
!! CATAGTATCCCCATTTTGGT+AGG - chr5_1:59447481-59447500 Msa0740500:exon 40.0%
TCGAGATTAGGGTTAGGGTT+TGG + chr5_1:59443064-59443083 None:intergenic 45.0%
GCGGTGATTGAATCGAGATT+AGG + chr5_1:59443076-59443095 None:intergenic 45.0%
AAGCTTTCGTTTCTTGGCCA+TGG + chr5_1:59443098-59443117 None:intergenic 45.0%
ACTTCTTCTTGTTGGGGTTC+GGG + chr5_1:59443157-59443176 None:intergenic 45.0%
TCGGCTACTTCTTCTTGTTG+GGG + chr5_1:59443163-59443182 None:intergenic 45.0%
CTTCGGCTACTTCTTCTTGT+TGG + chr5_1:59443165-59443184 None:intergenic 45.0%
CAACCTCAAAACGAAGGAGA+AGG - chr5_1:59443232-59443251 Msa0740500:three_prime_UTR 45.0%
! TCACCTTCTCCTTCGTTTTG+AGG + chr5_1:59443238-59443257 None:intergenic 45.0%
AGGTGAAGAAGAGCAAGAAG+AGG - chr5_1:59443252-59443271 Msa0740500:three_prime_UTR 45.0%
TGAAGAAGAGCAAGAAGAGG+AGG - chr5_1:59443255-59443274 Msa0740500:three_prime_UTR 45.0%
AATCAACAACAAGAGGGTGG+CGG - chr5_1:59443328-59443347 Msa0740500:three_prime_UTR 45.0%
ACTGTGAAGGTGGAAGCTAA+CGG - chr5_1:59443385-59443404 Msa0740500:three_prime_UTR 45.0%
!! GGTTCTAGAAGCTTCTCAAC+AGG + chr5_1:59443469-59443488 None:intergenic 45.0%
!! GCTTCTAGAACCATTCACGA+AGG - chr5_1:59443477-59443496 Msa0740500:three_prime_UTR 45.0%
CGAACATTCTCAGACAGATC+TGG + chr5_1:59443544-59443563 None:intergenic 45.0%
! ACAAAGATTTTCCGGTGAGC+GGG + chr5_1:59443586-59443605 None:intergenic 45.0%
! ACCACCACGTTTTCGAAGTA+CGG - chr5_1:59443643-59443662 Msa0740500:three_prime_UTR 45.0%
TTCACCGTACTTCGAAAACG+TGG + chr5_1:59443650-59443669 None:intergenic 45.0%
CGCAGAAAGTGATTGGGAAT+AGG - chr5_1:59443776-59443795 Msa0740500:three_prime_UTR 45.0%
CGGTGTCTGAGTATACTCAA+AGG - chr5_1:59443860-59443879 Msa0740500:three_prime_UTR 45.0%
TTTCAAGCAGTTTGGAGAGG+TGG - chr5_1:59443939-59443958 Msa0740500:three_prime_UTR 45.0%
ACAAACAGCGCAAAACCCTT+TGG + chr5_1:59444003-59444022 None:intergenic 45.0%
!! AAGGCTGTTGATGGTCCTAA+GGG - chr5_1:59444102-59444121 Msa0740500:three_prime_UTR 45.0%
TGGTCCTAAGGGTTACAACA+AGG - chr5_1:59444113-59444132 Msa0740500:three_prime_UTR 45.0%
GGTCCTAAGGGTTACAACAA+GGG - chr5_1:59444114-59444133 Msa0740500:three_prime_UTR 45.0%
GTCCTAAGGGTTACAACAAG+GGG - chr5_1:59444115-59444134 Msa0740500:three_prime_UTR 45.0%
TCCTAAGGGTTACAACAAGG+GGG - chr5_1:59444116-59444135 Msa0740500:three_prime_UTR 45.0%
! TGGTGATGATGCGAATGATG+CGG + chr5_1:59444174-59444193 None:intergenic 45.0%
CATTCGCATCATCACCATCA+CGG - chr5_1:59444177-59444196 Msa0740500:three_prime_UTR 45.0%
!! AAGTATTCACATGGTGGTGG+TGG - chr5_1:59444237-59444256 Msa0740500:three_prime_UTR 45.0%
! TTGCTTGCTAATCAAGGAGC+TGG - chr5_1:59444372-59444391 Msa0740500:three_prime_UTR 45.0%
TGCTAATCAAGGAGCTGGAT+TGG - chr5_1:59444377-59444396 Msa0740500:three_prime_UTR 45.0%
GCTAATCAAGGAGCTGGATT+GGG - chr5_1:59444378-59444397 Msa0740500:three_prime_UTR 45.0%
! TTGGGACTTGGGAATTTGCT+TGG - chr5_1:59444396-59444415 Msa0740500:three_prime_UTR 45.0%
! AATTTGCTTGGAGGTCTTGG+TGG - chr5_1:59444408-59444427 Msa0740500:three_prime_UTR 45.0%
GTATGGTAATCAGGCTGCTA+TGG - chr5_1:59444467-59444486 Msa0740500:three_prime_UTR 45.0%
AATCAGGCTGCTATGGGATA+TGG - chr5_1:59444474-59444493 Msa0740500:three_prime_UTR 45.0%
AGCTGAGGATTCTGGTATTG+TGG + chr5_1:59444516-59444535 None:intergenic 45.0%
ACAATACCAGAATCCTCAGC+TGG - chr5_1:59444515-59444534 Msa0740500:three_prime_UTR 45.0%
CAATACCAGAATCCTCAGCT+GGG - chr5_1:59444516-59444535 Msa0740500:three_prime_UTR 45.0%
!! CATGGCTCTGTTCCTTGTTT+TGG - chr5_1:59444904-59444923 Msa0740500:three_prime_UTR 45.0%
TTCACACTGCATACACACCT+TGG - chr5_1:59444971-59444990 Msa0740500:three_prime_UTR 45.0%
!! GCTGATTCTTCTGAAGTACC+AGG - chr5_1:59445469-59445488 Msa0740500:intron 45.0%
AGATGCATTTGAATAGGGCC+TGG + chr5_1:59445490-59445509 None:intergenic 45.0%
GGATTCCACAAAGGAACAAG+AGG + chr5_1:59445628-59445647 None:intergenic 45.0%
TTGTTCCTTTGTGGAATCCG+AGG - chr5_1:59445629-59445648 Msa0740500:intron 45.0%
ACATTCCTCGGATTCCACAA+AGG + chr5_1:59445637-59445656 None:intergenic 45.0%
!! TCATGGGAGTTTTGTGGTTC+TGG - chr5_1:59445894-59445913 Msa0740500:intron 45.0%
AAAGAGGGCTGGATTTGTGA+AGG + chr5_1:59446270-59446289 None:intergenic 45.0%
ATTTGCTTGCGAAGTTGGCT+TGG - chr5_1:59446429-59446448 Msa0740500:CDS 45.0%
CATCCTGCTATTCACTTCCA+AGG - chr5_1:59446529-59446548 Msa0740500:CDS 45.0%
! TAGCCTTGGAAGTGAATAGC+AGG + chr5_1:59446535-59446554 None:intergenic 45.0%
TAAAAGTGGCCACACTTGGT+GGG - chr5_1:59446553-59446572 Msa0740500:CDS 45.0%
TTGACTGTCTGGGAAAGTTC+GGG - chr5_1:59446662-59446681 Msa0740500:CDS 45.0%
TGAAGTTCGTAAGCCCAACT+TGG + chr5_1:59446749-59446768 None:intergenic 45.0%
GGATTCCATCTTTGATGTGG+CGG - chr5_1:59447175-59447194 Msa0740500:CDS 45.0%
! CGGTCATAGTATCCCCATTT+TGG - chr5_1:59447477-59447496 Msa0740500:exon 45.0%
!!! ATTAAATTTTCATAATTATT+TGG - chr5_1:59445078-59445097 Msa0740500:three_prime_UTR 5.0%
!!! TTTTATATAAAAAAAAAACT+CGG + chr5_1:59446881-59446900 None:intergenic 5.0%
TCTCGATTCAATCACCGCCA+TGG - chr5_1:59443078-59443097 Msa0740500:three_prime_UTR 50.0%
CTTTCGTTTCTTGGCCATGG+CGG + chr5_1:59443095-59443114 None:intergenic 50.0%
! TTCTTGTTGGGGTTCGGGTT+CGG + chr5_1:59443152-59443171 None:intergenic 50.0%
GGAGGTTGCAGAAGATGAAG+AGG - chr5_1:59443273-59443292 Msa0740500:three_prime_UTR 50.0%
TTCAAACAACGCTGCCGTGT+CGG - chr5_1:59443357-59443376 Msa0740500:three_prime_UTR 50.0%
ACACGTGCTTGTGAAGCAAG+CGG - chr5_1:59443507-59443526 Msa0740500:three_prime_UTR 50.0%
GTCTGAGAATGTTCGTCAGC+TGG - chr5_1:59443549-59443568 Msa0740500:intron 50.0%
! CAAAGATTTTCCGGTGAGCG+GGG + chr5_1:59443585-59443604 None:intergenic 50.0%
ACCGTACTTCGAAAACGTGG+TGG + chr5_1:59443647-59443666 None:intergenic 50.0%
AAGCAGCCGCAGAAAGTGAT+TGG - chr5_1:59443769-59443788 Msa0740500:three_prime_UTR 50.0%
AGCAGCCGCAGAAAGTGATT+GGG - chr5_1:59443770-59443789 Msa0740500:three_prime_UTR 50.0%
TGAGTATACTCAGACACCGG+TGG + chr5_1:59443859-59443878 None:intergenic 50.0%
CAGTTTGGAGAGGTGGATGA+TGG - chr5_1:59443946-59443965 Msa0740500:three_prime_UTR 50.0%
! AGAGGTGGATGATGGTCCAT+TGG - chr5_1:59443954-59443973 Msa0740500:three_prime_UTR 50.0%
! GAGGTGGATGATGGTCCATT+GGG - chr5_1:59443955-59443974 Msa0740500:three_prime_UTR 50.0%
! AGGTGGATGATGGTCCATTG+GGG - chr5_1:59443956-59443975 Msa0740500:three_prime_UTR 50.0%
TGGTCCATTGGGGTTGGATA+AGG - chr5_1:59443966-59443985 Msa0740500:three_prime_UTR 50.0%
!! GACGGTTGAGAGTGCTAAGA+AGG - chr5_1:59444029-59444048 Msa0740500:three_prime_UTR 50.0%
!! TGAGAGTGCTAAGAAGGCGT+TGG - chr5_1:59444035-59444054 Msa0740500:three_prime_UTR 50.0%
! AGAGCCGAATAAGGTGTTCG+AGG - chr5_1:59444059-59444078 Msa0740500:three_prime_UTR 50.0%
! GAGCCGAATAAGGTGTTCGA+GGG - chr5_1:59444060-59444079 Msa0740500:three_prime_UTR 50.0%
! AGCCGAATAAGGTGTTCGAG+GGG - chr5_1:59444061-59444080 Msa0740500:three_prime_UTR 50.0%
TGCCCCTCGAACACCTTATT+CGG + chr5_1:59444066-59444085 None:intergenic 50.0%
!! GAAGGCTGTTGATGGTCCTA+AGG - chr5_1:59444101-59444120 Msa0740500:three_prime_UTR 50.0%
CCTAAGGGTTACAACAAGGG+GGG - chr5_1:59444117-59444136 Msa0740500:three_prime_UTR 50.0%
GTGGTGGTCACTACAATCCA+AGG - chr5_1:59444205-59444224 Msa0740500:three_prime_UTR 50.0%
TCAAGTGACCACCGTGTGAT+GGG + chr5_1:59444263-59444282 None:intergenic 50.0%
ATCAAGTGACCACCGTGTGA+TGG + chr5_1:59444264-59444283 None:intergenic 50.0%
ATCACACGGTGGTCACTTGA+TGG - chr5_1:59444263-59444282 Msa0740500:three_prime_UTR 50.0%
ATTGAATCCGGCTCTTGGAC+AGG - chr5_1:59444338-59444357 Msa0740500:three_prime_UTR 50.0%
! AAGGAGCTGGATTGGGACTT+GGG - chr5_1:59444385-59444404 Msa0740500:three_prime_UTR 50.0%
! GGACTTGGGAATTTGCTTGG+AGG - chr5_1:59444399-59444418 Msa0740500:three_prime_UTR 50.0%
! GGGAATTTGCTTGGAGGTCT+TGG - chr5_1:59444405-59444424 Msa0740500:three_prime_UTR 50.0%
TGATTACCATACGCAGCAGC+AGG + chr5_1:59444459-59444478 None:intergenic 50.0%
TGCTGCTGCGTATGGTAATC+AGG - chr5_1:59444458-59444477 Msa0740500:three_prime_UTR 50.0%
CTCACCTAGTGACCCATGTA+AGG + chr5_1:59444585-59444604 None:intergenic 50.0%
AGGGCTGGATTTGTGAAGGT+GGG + chr5_1:59446266-59446285 None:intergenic 50.0%
!!! AGTGTGGCCACTTTTAGCCT+TGG + chr5_1:59446549-59446568 None:intergenic 50.0%
AGGCTAAAAGTGGCCACACT+TGG - chr5_1:59446549-59446568 Msa0740500:CDS 50.0%
CTAAAAGTGGCCACACTTGG+TGG - chr5_1:59446552-59446571 Msa0740500:CDS 50.0%
TCCATCTTTGATGTGGCGGT+TGG - chr5_1:59447179-59447198 Msa0740500:CDS 50.0%
!! CGGCTTGTTTGGTGGGTTCA+GGG + chr5_1:59443132-59443151 None:intergenic 55.0%
!! TCGGCTTGTTTGGTGGGTTC+AGG + chr5_1:59443133-59443152 None:intergenic 55.0%
! TCGGGTTCGGCTTGTTTGGT+GGG + chr5_1:59443139-59443158 None:intergenic 55.0%
! TTCGGGTTCGGCTTGTTTGG+TGG + chr5_1:59443140-59443159 None:intergenic 55.0%
CTTCACAGTCTGCTCCGACA+CGG + chr5_1:59443374-59443393 None:intergenic 55.0%
GTGAAGGTGGAAGCTAACGG+TGG - chr5_1:59443388-59443407 Msa0740500:three_prime_UTR 55.0%
AAGGTGGAAGCTAACGGTGG+TGG - chr5_1:59443391-59443410 Msa0740500:three_prime_UTR 55.0%
TGTTCGTCAGCTGGCTGATG+TGG - chr5_1:59443558-59443577 Msa0740500:three_prime_UTR 55.0%
! TCGTGTCAATTGGCTTCGGC+TGG - chr5_1:59443805-59443824 Msa0740500:three_prime_UTR 55.0%
! GGATGATGGTCCATTGGGGT+TGG - chr5_1:59443960-59443979 Msa0740500:three_prime_UTR 55.0%
GTCGCCTTATCCAACCCCAA+TGG + chr5_1:59443973-59443992 None:intergenic 55.0%
TTGGGGTTGGATAAGGCGAC+TGG - chr5_1:59443973-59443992 Msa0740500:three_prime_UTR 55.0%
TGGGGTTGGATAAGGCGACT+GGG - chr5_1:59443974-59443993 Msa0740500:three_prime_UTR 55.0%
TAAGGCGACTGGGAAGCCAA+AGG - chr5_1:59443984-59444003 Msa0740500:three_prime_UTR 55.0%
AAGGCGACTGGGAAGCCAAA+GGG - chr5_1:59443985-59444004 Msa0740500:three_prime_UTR 55.0%
! GGCGTTGGAAGAGCCGAATA+AGG - chr5_1:59444050-59444069 Msa0740500:three_prime_UTR 55.0%
! CCCCCCTTGTTGTAACCCTT+AGG + chr5_1:59444120-59444139 None:intergenic 55.0%
TCGCATCATCACCATCACGG+TGG - chr5_1:59444180-59444199 Msa0740500:three_prime_UTR 55.0%
CATCATCACCATCACGGTGG+TGG - chr5_1:59444183-59444202 Msa0740500:three_prime_UTR 55.0%
! GGTCACTTGATGGCTCCTAC+TGG - chr5_1:59444273-59444292 Msa0740500:three_prime_UTR 55.0%
CAGGGATTGAATCCGGCTCT+TGG - chr5_1:59444333-59444352 Msa0740500:three_prime_UTR 55.0%
GACAAAGCCTGTCCAAGAGC+CGG + chr5_1:59444348-59444367 None:intergenic 55.0%
! CAAGGAGCTGGATTGGGACT+TGG - chr5_1:59444384-59444403 Msa0740500:three_prime_UTR 55.0%
GGAGGACCAGCTTGATTCAC+CGG + chr5_1:59444438-59444457 None:intergenic 55.0%
TTACCATACGCAGCAGCAGG+AGG + chr5_1:59444456-59444475 None:intergenic 55.0%
CTATGGGATATGGCCAGCCT+GGG - chr5_1:59444484-59444503 Msa0740500:three_prime_UTR 55.0%
TGGTATTGTGGCTGCAACCC+AGG + chr5_1:59444504-59444523 None:intergenic 55.0%
CTTGACCCAGCTGAGGATTC+TGG + chr5_1:59444524-59444543 None:intergenic 55.0%
CAGAATCCTCAGCTGGGTCA+AGG - chr5_1:59444522-59444541 Msa0740500:three_prime_UTR 55.0%
AATCCTCAGCTGGGTCAAGG+TGG - chr5_1:59444525-59444544 Msa0740500:three_prime_UTR 55.0%
! GGTGGTGTTAGACCTCATCC+TGG - chr5_1:59444546-59444565 Msa0740500:three_prime_UTR 55.0%
GTTAGACCTCATCCTGGTCC+CGG - chr5_1:59444552-59444571 Msa0740500:three_prime_UTR 55.0%
CGCTCCTTACATGGGTCACT+AGG - chr5_1:59444578-59444597 Msa0740500:three_prime_UTR 55.0%
TGGGTCACTAGGTGAGTTGC+TGG - chr5_1:59444589-59444608 Msa0740500:three_prime_UTR 55.0%
GAGGGCTGGATTTGTGAAGG+TGG + chr5_1:59446267-59446286 None:intergenic 55.0%
CAGGATGCAAGCTCCATCAG+TGG + chr5_1:59446516-59446535 None:intergenic 55.0%
GCATTACCACCCACCAAGTG+TGG + chr5_1:59446565-59446584 None:intergenic 55.0%
CACTGCATGCAAGTGTACCC+TGG - chr5_1:59446588-59446607 Msa0740500:CDS 55.0%
GCCAACCGCCACATCAAAGA+TGG + chr5_1:59447183-59447202 None:intergenic 55.0%
! GGGTTCGGGTTCGGCTTGTT+TGG + chr5_1:59443143-59443162 None:intergenic 60.0%
CGTGTCGGAGCAGACTGTGA+AGG - chr5_1:59443372-59443391 Msa0740500:three_prime_UTR 60.0%
GTCGGAGCAGACTGTGAAGG+TGG - chr5_1:59443375-59443394 Msa0740500:three_prime_UTR 60.0%
! AGCATCGGACTGGGTGTCGT+CGG - chr5_1:59443740-59443759 Msa0740500:three_prime_UTR 60.0%
TCAGACACCGGTGGCGCATT+CGG + chr5_1:59443850-59443869 None:intergenic 60.0%
! CATCACCATCACGGTGGTGG+TGG - chr5_1:59444186-59444205 Msa0740500:three_prime_UTR 60.0%
ATGGCTCCTACTGGTCCTGC+TGG - chr5_1:59444282-59444301 Msa0740500:three_prime_UTR 60.0%
GCGTTGTAACCACCACCAGC+AGG + chr5_1:59444300-59444319 None:intergenic 60.0%
!! GCTGGTGGTGGTTACAACGC+CGG - chr5_1:59444300-59444319 Msa0740500:three_prime_UTR 60.0%
TGGTTACAACGCCGGTGTGC+CGG - chr5_1:59444308-59444327 Msa0740500:three_prime_UTR 60.0%
! GCCGGCTCAGGGATTGAATC+CGG - chr5_1:59444326-59444345 Msa0740500:three_prime_UTR 60.0%
GCCGGATTCAATCCCTGAGC+CGG + chr5_1:59444330-59444349 None:intergenic 60.0%
GCTATGGGATATGGCCAGCC+TGG - chr5_1:59444483-59444502 Msa0740500:three_prime_UTR 60.0%
ATTGTGGCTGCAACCCAGGC+TGG + chr5_1:59444500-59444519 None:intergenic 60.0%
!! ACCCATGTAAGGAGCGCCAC+CGG + chr5_1:59444574-59444593 None:intergenic 60.0%
! AAGTGGCCACACTTGGTGGG+TGG - chr5_1:59446556-59446575 Msa0740500:CDS 60.0%
CTGATGTGGACCCCGCTCAC+CGG - chr5_1:59443572-59443591 Msa0740500:three_prime_UTR 65.0%
! GCATCGGACTGGGTGTCGTC+GGG - chr5_1:59443741-59443760 Msa0740500:three_prime_UTR 65.0%
GGCTTCGGCTGGACCTGTTC+CGG - chr5_1:59443816-59443835 Msa0740500:three_prime_UTR 65.0%
TTCGGTGGAGGAGCCGGAAC+AGG + chr5_1:59443832-59443851 None:intergenic 65.0%
TCCTCCACCGAATGCGCCAC+CGG - chr5_1:59443840-59443859 Msa0740500:three_prime_UTR 65.0%
!! CACCATCACGGTGGTGGTGG+TGG - chr5_1:59444189-59444208 Msa0740500:three_prime_UTR 65.0%
GACCACCACCACCACCGTGA+TGG + chr5_1:59444194-59444213 None:intergenic 65.0%
!! GGTGGTGGTGGCCCATCACA+CGG - chr5_1:59444249-59444268 Msa0740500:three_prime_UTR 65.0%
GCTCCTACTGGTCCTGCTGG+TGG - chr5_1:59444285-59444304 Msa0740500:three_prime_UTR 65.0%
CCACCACCAGCAGGACCAGT+AGG + chr5_1:59444291-59444310 None:intergenic 65.0%
CCTACTGGTCCTGCTGGTGG+TGG - chr5_1:59444288-59444307 Msa0740500:three_prime_UTR 65.0%
CAATCCCTGAGCCGGCACAC+CGG + chr5_1:59444322-59444341 None:intergenic 65.0%
!! TGGAGGTCTTGGTGGTGCGC+CGG - chr5_1:59444416-59444435 Msa0740500:three_prime_UTR 65.0%
! GGTGCGCCGGTGAATCAAGC+TGG - chr5_1:59444429-59444448 Msa0740500:three_prime_UTR 65.0%
GGTCCTCCTGCTGCTGCGTA+TGG - chr5_1:59444450-59444469 Msa0740500:three_prime_UTR 65.0%
CCACCACCTTGACCCAGCTG+AGG + chr5_1:59444531-59444550 None:intergenic 65.0%
CCTCAGCTGGGTCAAGGTGG+TGG - chr5_1:59444528-59444547 Msa0740500:three_prime_UTR 65.0%
AGACCTCATCCTGGTCCCGG+TGG - chr5_1:59444555-59444574 Msa0740500:three_prime_UTR 65.0%
TCCCGGTGGCGCTCCTTACA+TGG - chr5_1:59444569-59444588 Msa0740500:three_prime_UTR 65.0%
!! CCCATGTAAGGAGCGCCACC+GGG + chr5_1:59444573-59444592 None:intergenic 65.0%
CCCGGTGGCGCTCCTTACAT+GGG - chr5_1:59444570-59444589 Msa0740500:three_prime_UTR 65.0%
! GGCGCATTCGGTGGAGGAGC+CGG + chr5_1:59443838-59443857 None:intergenic 70.0%
! ACCGGTGGCGCATTCGGTGG+AGG + chr5_1:59443844-59443863 None:intergenic 70.0%
GACACCGGTGGCGCATTCGG+TGG + chr5_1:59443847-59443866 None:intergenic 70.0%
! GGTGGTGGCCCATCACACGG+TGG - chr5_1:59444252-59444271 Msa0740500:three_prime_UTR 70.0%
!! AACGCCGGTGTGCCGGCTCA+GGG - chr5_1:59444315-59444334 Msa0740500:three_prime_UTR 70.0%
!! TAAGGAGCGCCACCGGGACC+AGG + chr5_1:59444567-59444586 None:intergenic 70.0%
!! CAACGCCGGTGTGCCGGCTC+AGG - chr5_1:59444314-59444333 Msa0740500:three_prime_UTR 75.0%
GCGCCACCGGGACCAGGATG+AGG + chr5_1:59444561-59444580 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 59442993 59447590 59442993 ID=Msa0740500;Name=Msa0740500
chr5_1 mRNA 59442993 59447590 59442993 ID=Msa0740500-mRNA-1;Parent=Msa0740500;Name=Msa0740500-mRNA-1;_AED=0.10;_eAED=0.10;_QI=104|1|1|1|0|0.33|3|2142|500
chr5_1 exon 59442993 59443533 59442993 ID=Msa0740500-mRNA-1:exon:17142;Parent=Msa0740500-mRNA-1
chr5_1 exon 59443554 59445154 59443554 ID=Msa0740500-mRNA-1:exon:17141;Parent=Msa0740500-mRNA-1
chr5_1 exon 59445984 59447590 59445984 ID=Msa0740500-mRNA-1:exon:17140;Parent=Msa0740500-mRNA-1
chr5_1 five_prime_UTR 59447487 59447590 59447487 ID=Msa0740500-mRNA-1:five_prime_utr;Parent=Msa0740500-mRNA-1
chr5_1 CDS 59445984 59447486 59445984 ID=Msa0740500-mRNA-1:cds;Parent=Msa0740500-mRNA-1
chr5_1 three_prime_UTR 59443554 59445154 59443554 ID=Msa0740500-mRNA-1:three_prime_utr;Parent=Msa0740500-mRNA-1
chr5_1 three_prime_UTR 59442993 59443533 59442993 ID=Msa0740500-mRNA-1:three_prime_utr;Parent=Msa0740500-mRNA-1
Gene Sequence

>Msa0740500

ATGGCCAAGAAACGAAAGCTTCGATCTTCTGACCCTGAACCCACCAAACAAGCCGAACCCGAACCCCAACAAGAAGAAGTAGCCGAAGAAGAACCAACAACACAAGAAGAAGAAATCACCCCGATTGAAGAAGATCAACCTCAAAACGAAGGAGAAGGTGAAGAAGAGCAAGAAGAGGAGGTTGCAGAAGATGAAGAGGATGATCAACAAGGAGAAGACGAAACCCTAGAAAATCAACAACAAGAGGGTGGCGGTGAAGCTTCAAACAACGCTGCCGTGTCGGAGCAGACTGTGAAGGTGGAAGCTAACGGTGGTGGTGAGAACAATAACAACGAAGAACAAGAGGAAGATCTTGAATTGGAAGATGAGCCTGTTGAGAAGCTTCTAGAACCATTCACGAAGGAGCAATTACACGTGCTTGTGAAGCAAGCGGTTGAGAAGTATCCAGATCTGTCTGAGAATGTTCGTCAGCTGGCTGATGTGGACCCCGCTCACCGGAAAATCTTTGTTCATGGTCTTGGTTGGGATGCTACTGCTGAAACGCTAACCACCACGTTTTCGAAGTACGGTGAAATTGAAGATTGTAAGGCTGTGACTGATAAGAATTCTGGGAAATCGAAAGGTTATGCTTTTATTTTGTTTAAGCATCGGACTGGGTGTCGTCGGGCGTTAAAGCAGCCGCAGAAAGTGATTGGGAATAGGACTACATCGTGTCAATTGGCTTCGGCTGGACCTGTTCCGGCTCCTCCACCGAATGCGCCACCGGTGTCTGAGTATACTCAAAGGAAGATTTTTGTGAGTAATGTGAGTTCTGATATTGATCCTCAGAAGCTGCTTGAGTTTTTCAAGCAGTTTGGAGAGGTGGATGATGGTCCATTGGGGTTGGATAAGGCGACTGGGAAGCCAAAGGGTTTTGCGCTGTTTGTTTATAAGACGGTTGAGAGTGCTAAGAAGGCGTTGGAAGAGCCGAATAAGGTGTTCGAGGGGCATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGTTACAACAAGGGGGGTCATTATCAGCAGCAGCAACATCATCATCAGCCGCATCATTCGCATCATCACCATCACGGTGGTGGTGGTGGTCACTACAATCCAAGGAAAGAAAAGAAGTATTCACATGGTGGTGGTGGCCCATCACACGGTGGTCACTTGATGGCTCCTACTGGTCCTGCTGGTGGTGGTTACAACGCCGGTGTGCCGGCTCAGGGATTGAATCCGGCTCTTGGACAGGCTTTGTCTGCTTTGCTTGCTAATCAAGGAGCTGGATTGGGACTTGGGAATTTGCTTGGAGGTCTTGGTGGTGCGCCGGTGAATCAAGCTGGTCCTCCTGCTGCTGCGTATGGTAATCAGGCTGCTATGGGATATGGCCAGCCTGGGTTGCAGCCACAATACCAGAATCCTCAGCTGGGTCAAGGTGGTGGTGTTAGACCTCATCCTGGTCCCGGTGGCGCTCCTTACATGGGTCACTAG
Protein sequence

>Msa0740500

MAKKRKLRSSDPEPTKQAEPEPQQEEVAEEEPTTQEEEITPIEEDQPQNEGEGEEEQEEEVAEDEEDDQQGEDETLENQQQEGGGEASNNAAVSEQTVKVEANGGGENNNNEEQEEDLELEDEPVEKLLEPFTKEQLHVLVKQAVEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKNSGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTLYCQKAVDGPKGYNKGGHYQQQQHHHQPHHSHHHHHGGGGGHYNPRKEKKYSHGGGGPSHGGHLMAPTGPAGGGYNAGVPAQGLNPALGQALSALLANQGAGLGLGNLLGGLGGAPVNQAGPPAAAYGNQAAMGYGQPGLQPQYQNPQLGQGGGVRPHPGPGGAPYMGH*