AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0740580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0740580 MtrunA17_Chr5g0440931 100.000 149 0 0 1 149 1 149 1.84e-106 300
Msa0740580 MtrunA17_Chr6g0460211 99.329 149 1 0 1 149 1 149 6.63e-106 298
Msa0740580 MtrunA17_Chr3g0093271 98.658 149 2 0 1 149 52 200 1.81e-105 299
Msa0740580 MtrunA17_Chr7g0254731 97.987 149 3 0 1 149 1 149 7.12e-104 293
Msa0740580 MtrunA17_Chr1g0188171 78.378 148 32 0 1 148 1 148 1.02e-83 242
Msa0740580 MtrunA17_Chr1g0188171 45.070 71 36 1 82 149 6 76 2.07e-11 58.2
Msa0740580 MtrunA17_Chr1g0166281 77.703 148 33 0 1 148 1 148 1.41e-82 239
Msa0740580 MtrunA17_Chr1g0166281 47.692 65 34 0 85 149 12 76 4.16e-12 60.1
Msa0740580 MtrunA17_Chr7g0274101 63.514 148 54 0 1 148 1 148 4.51e-58 177
Msa0740580 MtrunA17_Chr1g0185001 57.823 147 61 1 1 147 1 146 1.93e-56 173
Msa0740580 MtrunA17_Chr1g0185001 40.260 77 45 1 73 149 1 76 4.79e-12 60.1
Msa0740580 MtrunA17_Chr5g0398751 50.336 149 72 1 1 149 1 147 1.49e-48 153
Msa0740580 MtrunA17_Chr3g0100541 53.425 146 53 1 1 146 41 171 7.71e-44 142
Msa0740580 MtrunA17_Chr8g0366401 46.622 148 76 1 4 148 9 156 8.60e-44 142
Msa0740580 MtrunA17_Chr7g0245231 45.455 143 78 0 4 146 22 164 1.57e-39 131
Msa0740580 MtrunA17_Chr7g0245231 46.970 66 35 0 84 149 29 94 2.32e-12 61.2
Msa0740580 MtrunA17_Chr6g0450921 44.056 143 80 0 4 146 21 163 1.49e-37 126
Msa0740580 MtrunA17_Chr6g0450921 43.421 76 43 0 74 149 18 93 1.50e-12 61.6
Msa0740580 MtrunA17_Chr1g0161211 48.551 138 71 0 12 149 46 183 3.05e-37 126
Msa0740580 MtrunA17_Chr1g0161211 51.613 62 30 0 84 145 45 106 5.32e-15 68.9
Msa0740580 MtrunA17_Chr1g0161211 49.254 67 34 0 7 73 114 180 1.57e-12 62.0
Msa0740580 MtrunA17_Chr3g0100511 46.897 145 62 1 1 145 41 170 4.60e-37 125
Msa0740580 MtrunA17_Chr4g0062221 42.553 141 79 1 8 146 7 147 7.01e-36 122
Msa0740580 MtrunA17_Chr4g0062221 46.875 64 34 0 16 79 90 153 1.06e-12 62.0
Msa0740580 MtrunA17_Chr3g0100561 46.207 145 63 1 1 145 41 170 6.15e-35 119
Msa0740580 MtrunA17_Chr8g0391691 48.855 131 67 0 12 142 36 166 6.70e-34 117
Msa0740580 MtrunA17_Chr8g0391691 56.250 64 28 0 6 69 103 166 9.33e-17 73.2
Msa0740580 MtrunA17_Chr8g0368681 41.958 143 81 1 6 146 6 148 7.60e-34 116
Msa0740580 MtrunA17_Chr8g0368681 39.706 68 41 0 12 79 87 154 7.79e-11 57.0
Msa0740580 MtrunA17_Chr4g0033601 44.928 138 74 1 11 146 4 141 4.95e-33 114
Msa0740580 MtrunA17_Chr8g0392951 44.444 135 74 1 12 146 24 157 6.45e-32 111
Msa0740580 MtrunA17_Chr8g0392951 43.284 67 38 0 7 73 91 157 2.16e-12 61.2
Msa0740580 MtrunA17_Chr3g0100471 68.000 75 24 0 1 75 41 115 1.58e-31 108
Msa0740580 MtrunA17_Chr5g0434951 42.963 135 76 1 12 146 4 137 8.03e-31 108
Msa0740580 MtrunA17_Chr3g0111371 42.963 135 73 1 12 146 5 135 1.42e-28 102
Msa0740580 MtrunA17_Chr3g0111371 43.750 64 36 0 12 75 74 137 5.26e-13 62.4
Msa0740580 MtrunA17_Chr1g0169581 39.416 137 81 1 12 146 4 140 3.38e-28 101
Msa0740580 MtrunA17_Chr1g0169581 43.750 64 36 0 12 75 79 142 2.59e-12 60.5
Msa0740580 MtrunA17_Chr7g0267751 41.781 146 82 2 1 146 429 571 1.94e-27 106
Msa0740580 MtrunA17_Chr5g0444171 40.940 149 84 3 1 148 386 531 2.23e-27 106
Msa0740580 MtrunA17_Chr6g0482731 40.288 139 81 2 12 149 26 163 2.63e-27 100
Msa0740580 MtrunA17_Chr6g0482731 43.836 73 41 0 6 78 93 165 5.31e-13 63.2
Msa0740580 MtrunA17_Chr4g0074811 40.136 147 84 3 1 146 385 528 8.86e-27 104
Msa0740580 MtrunA17_Chr7g0256171 44.286 140 76 1 11 148 4 143 1.00e-26 98.2
Msa0740580 MtrunA17_Chr7g0245911 39.865 148 80 3 8 146 43 190 1.08e-26 99.0
Msa0740580 MtrunA17_Chr8g0351681 39.865 148 81 3 7 146 44 191 2.99e-26 98.2
Msa0740580 MtrunA17_Chr8g0385341 39.041 146 86 2 1 146 324 466 4.65e-26 102
Msa0740580 MtrunA17_Chr1g0200601 40.541 148 81 3 1 146 324 466 5.25e-26 102
Msa0740580 MtrunA17_Chr1g0157131 37.838 148 86 3 1 146 368 511 7.28e-26 101
Msa0740580 MtrunA17_Chr7g0256701 41.135 141 78 3 11 146 72 212 7.48e-26 97.4
Msa0740580 MtrunA17_Chr4g0059951 38.514 148 86 4 1 146 367 511 9.91e-26 101
Msa0740580 MtrunA17_Chr1g0176751 38.356 146 87 2 1 146 418 560 1.20e-25 101
Msa0740580 MtrunA17_Chr3g0131181 37.671 146 88 2 1 146 323 465 1.49e-25 100
Msa0740580 MtrunA17_Chr5g0397101 39.189 148 84 3 1 146 360 503 2.16e-25 100
Msa0740580 MtrunA17_Chr4g0064231 40.523 153 73 2 12 146 64 216 2.82e-25 96.3
Msa0740580 MtrunA17_Chr3g0098951 38.816 152 86 2 1 146 377 527 4.11e-25 99.8
Msa0740580 MtrunA17_Chr8g0387671 37.838 148 86 3 1 146 360 503 4.15e-24 97.1
Msa0740580 MtrunA17_Chr7g0242561 36.301 146 92 1 1 146 350 494 1.88e-23 95.1
Msa0740580 MtrunA17_Chr5g0448721 36.301 146 90 2 1 146 390 532 2.04e-23 95.1
Msa0740580 MtrunA17_Chr1g0169621 33.537 164 82 2 12 148 4 167 3.66e-23 89.4
Msa0740580 MtrunA17_Chr1g0170281 35.616 146 91 2 1 146 412 554 5.26e-23 94.0
Msa0740580 MtrunA17_Chr0c02g0489761 37.671 146 89 2 1 146 372 515 9.81e-23 93.2
Msa0740580 MtrunA17_Chr5g0441691 36.735 147 89 3 1 146 362 505 5.07e-22 90.9
Msa0740580 MtrunA17_Chr2g0329371 41.429 140 78 2 11 146 63 202 6.61e-22 87.0
Msa0740580 MtrunA17_Chr4g0044961 35.766 137 86 1 10 146 55 189 1.31e-21 85.9
Msa0740580 MtrunA17_Chr4g0057651 35.714 140 80 3 12 147 6 139 1.65e-21 84.3
Msa0740580 MtrunA17_Chr4g0033371 35.374 147 92 3 1 147 366 509 1.76e-21 89.4
Msa0740580 MtrunA17_Chr7g0225921 32.624 141 92 3 8 147 2 140 1.82e-21 84.3
Msa0740580 MtrunA17_Chr7g0225921 41.791 67 39 0 7 73 74 140 1.12e-11 58.9
Msa0740580 MtrunA17_Chr3g0116151 32.374 139 83 2 13 146 7 139 2.48e-21 84.0
Msa0740580 MtrunA17_Chr3g0116141 32.374 139 83 2 13 146 6 138 2.84e-21 83.6
Msa0740580 MtrunA17_Chr3g0100501 38.194 144 36 2 1 144 41 131 3.43e-21 83.6
Msa0740580 MtrunA17_Chr3g0100461 64.815 54 19 0 93 146 53 106 1.04e-20 81.6
Msa0740580 MtrunA17_Chr3g0100461 42.667 75 36 1 1 75 41 108 1.35e-13 63.2
Msa0740580 MtrunA17_Chr5g0409441 32.847 137 92 0 6 142 16 152 1.07e-20 82.8
Msa0740580 MtrunA17_Chr1g0173541 31.757 148 100 1 1 148 346 492 1.84e-20 86.7
Msa0740580 MtrunA17_Chr7g0257751 31.757 148 100 1 1 148 352 498 4.52e-20 85.5
Msa0740580 MtrunA17_Chr4g0057661 34.286 140 82 3 12 147 6 139 6.00e-20 80.1
Msa0740580 MtrunA17_Chr4g0057641 34.286 140 82 3 12 147 6 139 6.76e-20 80.1
Msa0740580 MtrunA17_Chr4g0074791 34.014 147 82 5 1 146 390 522 7.17e-19 82.0
Msa0740580 MtrunA17_Chr5g0402361 36.691 139 81 2 12 147 48 182 1.15e-18 80.9
Msa0740580 MtrunA17_Chr5g0402361 35.000 140 83 3 12 147 220 355 9.79e-17 75.5
Msa0740580 MtrunA17_Chr5g0402361 29.375 160 85 3 12 143 120 279 4.09e-14 68.2
Msa0740580 MtrunA17_Chr6g0459231 27.857 140 100 1 8 147 4 142 1.45e-18 76.6
Msa0740580 MtrunA17_Chr6g0459231 37.313 67 42 0 7 73 75 141 5.20e-11 57.0
Msa0740580 MtrunA17_Chr8g0373691 32.394 142 94 2 6 146 47 187 5.86e-18 76.3
Msa0740580 MtrunA17_Chr5g0402331 35.000 140 83 3 12 147 48 183 9.32e-18 75.9
Msa0740580 MtrunA17_Chr1g0176421 33.094 139 90 2 1 139 455 590 1.23e-17 78.6
Msa0740580 MtrunA17_Chr7g0245371 32.192 146 87 2 13 146 25 170 3.32e-16 71.6
Msa0740580 MtrunA17_Chr5g0396261 33.036 112 73 1 36 145 1 112 5.07e-15 67.0
Msa0740580 MtrunA17_Chr3g0121191 48.529 68 35 0 6 73 150 217 7.48e-15 68.9
Msa0740580 MtrunA17_Chr3g0121191 32.847 137 82 1 11 147 92 218 7.86e-14 66.2
Msa0740580 MtrunA17_Chr5g0405421 27.632 152 98 4 1 146 395 540 9.84e-14 67.4
Msa0740580 MtrunA17_Chr7g0252401 30.556 144 91 4 1 142 23 159 2.03e-12 63.5
Msa0740580 MtrunA17_Chr4g0042491 44.595 74 41 0 73 146 102 175 5.89e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0740580 AT3G43810.2 99.324 148 1 0 1 148 1 148 5.88e-106 301
Msa0740580 AT3G43810.2 45.455 77 41 1 73 149 1 76 4.82e-13 64.3
Msa0740580 AT3G43810.1 99.329 149 1 0 1 149 1 149 9.16e-106 298
Msa0740580 AT2G27030.3 98.658 149 2 0 1 149 1 149 1.76e-105 298
Msa0740580 AT2G27030.3 46.269 67 36 0 12 78 85 151 5.97e-13 63.5
Msa0740580 AT5G21274.1 98.658 149 2 0 1 149 1 149 2.43e-105 297
Msa0740580 AT3G56800.1 98.658 149 2 0 1 149 1 149 3.46e-105 296
Msa0740580 AT2G41110.1 98.658 149 2 0 1 149 1 149 3.46e-105 296
Msa0740580 AT2G27030.1 98.658 149 2 0 1 149 1 149 3.46e-105 296
Msa0740580 AT1G66410.1 97.987 149 3 0 1 149 1 149 5.98e-105 296
Msa0740580 AT5G37780.1 97.987 149 3 0 1 149 1 149 5.98e-105 296
Msa0740580 AT1G66410.2 91.824 159 3 1 1 149 1 159 1.01e-101 288
Msa0740580 AT2G41110.2 91.304 161 2 1 1 149 1 161 2.84e-101 287
Msa0740580 AT5G37780.2 89.024 164 3 1 1 149 1 164 1.37e-100 286
Msa0740580 AT5G37780.3 83.429 175 3 1 1 149 1 175 7.31e-99 281
Msa0740580 AT5G37780.4 97.581 124 3 0 26 149 13 136 6.23e-86 248
Msa0740580 AT5G37780.4 47.692 65 34 0 12 76 72 136 2.49e-13 63.5
Msa0740580 AT3G22930.1 77.083 144 33 0 4 147 27 170 1.19e-80 236
Msa0740580 AT3G43810.4 100.000 113 0 0 37 149 1 113 1.01e-78 228
Msa0740580 AT3G43810.4 47.692 65 34 0 12 76 49 113 1.70e-13 63.2
Msa0740580 AT3G43810.3 100.000 113 0 0 37 149 1 113 1.01e-78 228
Msa0740580 AT3G43810.3 47.692 65 34 0 12 76 49 113 1.70e-13 63.2
Msa0740580 AT4G14640.1 74.126 143 37 0 5 147 6 148 2.01e-78 229
Msa0740580 AT1G66410.4 97.345 113 3 0 37 149 1 113 2.98e-77 225
Msa0740580 AT1G66410.4 47.692 65 34 0 12 76 49 113 5.73e-14 64.3
Msa0740580 AT1G66410.3 97.345 113 3 0 37 149 1 113 2.98e-77 225
Msa0740580 AT1G66410.3 47.692 65 34 0 12 76 49 113 5.73e-14 64.3
Msa0740580 AT4G14640.2 72.951 122 33 0 26 147 9 130 1.33e-65 196
Msa0740580 AT4G14640.2 46.774 62 33 0 12 73 68 129 4.37e-13 62.8
Msa0740580 AT2G41090.1 64.430 149 50 1 1 149 1 146 2.12e-61 187
Msa0740580 AT2G41100.7 56.627 166 55 2 1 149 55 220 4.81e-54 172
Msa0740580 AT2G41100.7 61.702 94 33 1 4 97 148 238 2.21e-30 111
Msa0740580 AT2G41100.7 45.669 127 53 2 36 146 1 127 1.28e-29 109
Msa0740580 AT2G41100.6 56.627 166 55 2 1 149 55 220 4.81e-54 172
Msa0740580 AT2G41100.6 61.702 94 33 1 4 97 148 238 2.21e-30 111
Msa0740580 AT2G41100.6 45.669 127 53 2 36 146 1 127 1.28e-29 109
Msa0740580 AT2G41100.3 56.627 166 55 2 1 149 55 220 4.81e-54 172
Msa0740580 AT2G41100.3 61.702 94 33 1 4 97 148 238 2.21e-30 111
Msa0740580 AT2G41100.3 45.669 127 53 2 36 146 1 127 1.28e-29 109
Msa0740580 AT2G41100.4 56.627 166 55 2 1 149 90 255 1.37e-53 172
Msa0740580 AT2G41100.4 51.235 162 63 2 1 146 1 162 1.57e-49 161
Msa0740580 AT2G41100.4 61.702 94 33 1 4 97 183 273 4.70e-30 111
Msa0740580 AT2G41100.1 56.627 166 55 2 1 149 90 255 1.37e-53 172
Msa0740580 AT2G41100.1 51.235 162 63 2 1 146 1 162 1.57e-49 161
Msa0740580 AT2G41100.1 61.702 94 33 1 4 97 183 273 4.70e-30 111
Msa0740580 AT4G14640.3 72.816 103 28 0 5 107 6 108 4.39e-53 164
Msa0740580 AT3G22930.2 74.757 103 26 0 4 106 27 129 9.94e-53 163
Msa0740580 AT3G22930.2 46.774 62 33 0 85 146 35 96 3.04e-11 57.8
Msa0740580 AT3G51920.1 51.351 148 72 0 1 148 1 148 6.03e-47 149
Msa0740580 AT1G12310.1 48.980 147 73 1 3 149 4 148 1.95e-46 148
Msa0740580 AT1G62820.1 48.299 147 74 1 3 149 4 148 3.64e-46 147
Msa0740580 AT1G32250.1 43.421 152 80 1 1 146 5 156 2.75e-41 135
Msa0740580 AT3G50360.1 47.183 142 75 0 5 146 20 161 3.44e-40 133
Msa0740580 AT3G50360.1 45.714 70 38 0 80 149 22 91 4.32e-13 63.5
Msa0740580 AT4G37010.1 43.662 142 80 0 5 146 20 161 5.86e-36 122
Msa0740580 AT4G37010.2 43.662 142 80 0 5 146 24 165 6.08e-36 122
Msa0740580 AT2G41100.2 53.077 130 44 2 37 149 1 130 3.56e-35 121
Msa0740580 AT2G41100.2 61.702 94 33 1 4 97 58 148 1.85e-31 112
Msa0740580 AT2G41100.5 60.825 97 35 1 1 97 1 94 2.50e-34 117
Msa0740580 AT2G41100.5 50.649 77 37 1 73 149 1 76 1.36e-17 74.7
Msa0740580 AT1G24620.1 46.763 139 73 1 9 147 34 171 1.89e-33 116
Msa0740580 AT1G18530.1 41.379 145 77 2 7 146 2 143 3.53e-33 115
Msa0740580 AT1G18530.1 42.647 68 39 0 12 79 82 149 1.65e-11 58.9
Msa0740580 AT3G03000.1 44.521 146 80 1 4 148 12 157 8.01e-33 114
Msa0740580 AT3G25600.1 40.397 151 82 2 1 146 1 148 5.11e-32 112
Msa0740580 AT3G25600.1 41.176 68 40 0 12 79 87 154 2.27e-11 58.9
Msa0740580 AT1G05990.1 44.604 139 74 2 11 146 4 142 4.47e-31 109
Msa0740580 AT1G18210.2 42.222 135 74 1 12 146 23 153 4.80e-31 110
Msa0740580 AT1G18210.1 42.222 135 74 1 12 146 23 153 4.80e-31 110
Msa0740580 AT1G66400.1 43.478 138 76 1 12 147 15 152 5.03e-31 109
Msa0740580 AT5G37770.1 42.446 139 76 1 12 146 17 155 7.74e-30 106
Msa0740580 AT5G37770.1 44.615 65 36 0 10 74 92 156 1.31e-13 64.7
Msa0740580 AT5G37770.2 42.446 139 76 1 12 146 17 155 7.74e-30 106
Msa0740580 AT5G37770.2 44.615 65 36 0 10 74 92 156 1.31e-13 64.7
Msa0740580 AT1G76040.1 41.781 146 83 2 1 146 167 310 1.31e-29 110
Msa0740580 AT1G76040.4 41.781 146 83 2 1 146 167 310 1.31e-29 110
Msa0740580 AT1G73630.1 40.146 137 78 1 12 148 20 152 1.94e-29 105
Msa0740580 AT4G03290.1 45.390 141 72 2 11 146 4 144 2.06e-29 105
Msa0740580 AT4G03290.1 46.875 64 32 1 14 75 83 146 1.88e-11 58.9
Msa0740580 AT2G43290.1 42.657 143 75 3 11 146 64 206 2.23e-29 107
Msa0740580 AT1G76040.2 41.781 146 83 2 1 146 405 548 1.81e-28 109
Msa0740580 AT3G59440.1 40.816 147 84 2 2 146 41 186 1.95e-27 101
Msa0740580 AT5G23580.1 40.411 146 84 2 1 146 316 458 5.91e-27 105
Msa0740580 AT2G15680.1 37.324 142 87 1 5 146 43 182 9.19e-27 99.4
Msa0740580 AT4G21940.1 40.268 149 85 3 1 148 395 540 2.31e-26 103
Msa0740580 AT4G21940.2 40.268 149 85 3 1 148 395 540 2.83e-26 103
Msa0740580 AT4G23650.1 39.189 148 84 3 1 146 372 515 1.25e-25 101
Msa0740580 AT4G23650.1 43.478 69 36 1 82 147 377 445 5.08e-11 59.7
Msa0740580 AT1G35670.1 38.356 146 87 2 1 146 320 462 1.43e-25 101
Msa0740580 AT4G09570.1 39.189 148 83 3 1 146 319 461 2.50e-25 100
Msa0740580 AT4G12860.1 40.580 138 80 1 11 146 4 141 2.98e-25 94.7
Msa0740580 AT4G04720.2 38.926 149 87 3 1 148 373 518 5.57e-25 99.8
Msa0740580 AT4G04720.1 38.926 149 87 3 1 148 373 518 5.57e-25 99.8
Msa0740580 AT4G38230.1 37.671 146 88 2 1 146 174 316 6.29e-25 97.8
Msa0740580 AT3G07490.1 41.304 138 79 1 11 146 4 141 6.96e-25 93.6
Msa0740580 AT3G10660.2 36.986 146 89 2 1 146 480 622 7.33e-25 99.8
Msa0740580 AT3G10660.1 36.986 146 89 2 1 146 480 622 7.33e-25 99.8
Msa0740580 AT5G19360.1 40.816 147 83 3 1 146 362 505 8.57e-25 99.4
Msa0740580 AT4G38230.2 37.671 146 88 2 1 146 348 490 1.68e-24 98.2
Msa0740580 AT4G38230.4 37.671 146 88 2 1 146 318 460 1.83e-24 98.2
Msa0740580 AT4G38230.3 37.671 146 88 2 1 146 318 460 1.83e-24 98.2
Msa0740580 AT1G61950.1 39.189 148 84 3 1 146 393 536 2.01e-24 98.2
Msa0740580 AT5G12180.1 40.136 147 84 3 1 146 367 510 3.83e-24 97.4
Msa0740580 AT3G10190.1 40.146 137 79 3 12 146 70 205 7.15e-24 92.4
Msa0740580 AT5G04870.1 36.301 146 90 2 1 146 444 586 7.36e-24 96.7
Msa0740580 AT1G74740.1 35.570 149 93 3 1 148 353 499 1.92e-23 95.5
Msa0740580 AT3G20410.2 36.986 146 90 2 1 146 385 528 2.90e-23 95.1
Msa0740580 AT3G20410.1 36.986 146 90 2 1 146 385 528 2.90e-23 95.1
Msa0740580 AT2G17290.1 36.301 146 90 2 1 146 379 521 4.84e-23 94.4
Msa0740580 AT2G17290.2 36.301 146 90 2 1 146 379 521 4.84e-23 94.4
Msa0740580 AT2G38910.1 35.616 146 91 2 1 146 428 570 1.23e-22 93.2
Msa0740580 AT4G04695.1 36.913 149 90 3 1 148 325 470 1.32e-22 92.8
Msa0740580 AT4G35310.2 35.616 146 91 2 1 146 391 533 1.41e-22 93.2
Msa0740580 AT4G35310.1 35.616 146 91 2 1 146 391 533 1.41e-22 93.2
Msa0740580 AT4G04740.4 37.671 146 87 3 2 146 363 505 1.59e-22 92.8
Msa0740580 AT4G04740.6 37.671 146 87 3 2 146 363 505 1.59e-22 92.8
Msa0740580 AT4G04740.5 37.671 146 87 3 2 146 363 505 1.59e-22 92.8
Msa0740580 AT4G04740.3 37.671 146 87 3 2 146 363 505 1.59e-22 92.8
Msa0740580 AT4G04740.1 37.671 146 87 3 2 146 363 505 1.59e-22 92.8
Msa0740580 AT4G04740.7 37.671 146 87 3 2 146 363 505 1.59e-22 92.8
Msa0740580 AT3G50770.1 36.429 140 84 2 12 146 64 203 1.93e-22 89.0
Msa0740580 AT3G50770.1 44.118 68 38 0 82 149 61 128 7.42e-13 63.5
Msa0740580 AT1G50700.1 35.616 146 92 2 1 146 367 510 2.24e-22 92.4
Msa0740580 AT4G04700.1 38.776 147 86 3 1 146 325 468 5.24e-22 91.3
Msa0740580 AT5G17470.1 37.500 136 82 2 15 148 5 139 5.37e-22 86.3
Msa0740580 AT5G17470.1 47.541 61 32 0 14 74 79 139 2.82e-12 60.8
Msa0740580 AT5G42380.1 36.232 138 87 1 10 146 47 184 1.94e-21 85.5
Msa0740580 AT1G18890.1 37.333 150 89 4 1 148 357 503 2.23e-21 89.7
Msa0740580 AT3G57530.1 36.054 147 90 3 1 146 357 500 3.20e-21 89.0
Msa0740580 AT5G12480.2 34.899 149 95 2 1 148 259 406 3.95e-21 88.6
Msa0740580 AT5G12480.1 34.899 149 95 2 1 148 353 500 5.19e-21 88.6
Msa0740580 AT2G36180.1 41.176 136 76 3 15 147 3 137 1.32e-20 82.4
Msa0740580 AT3G03400.1 36.434 129 80 1 13 139 6 134 2.46e-20 81.6
Msa0740580 AT3G51850.1 33.562 146 96 1 1 146 348 492 3.11e-20 86.3
Msa0740580 AT3G03410.1 35.556 135 78 1 14 148 4 129 9.44e-20 79.7
Msa0740580 AT5G19450.2 32.886 149 98 2 1 148 351 498 3.03e-19 83.6
Msa0740580 AT5G19450.1 32.886 149 98 2 1 148 351 498 3.03e-19 83.6
Msa0740580 AT2G41410.1 34.752 141 89 3 11 148 69 209 3.49e-19 80.5
Msa0740580 AT4G04710.2 35.374 147 91 3 1 146 326 469 3.62e-19 83.2
Msa0740580 AT4G04710.3 35.374 147 91 3 1 146 312 455 3.79e-19 83.2
Msa0740580 AT4G04710.1 35.374 147 91 3 1 146 339 482 4.07e-19 83.2
Msa0740580 AT2G41860.2 32.192 146 98 1 1 146 348 492 2.04e-18 81.3
Msa0740580 AT2G41860.1 32.192 146 98 1 1 146 348 492 2.06e-18 81.3
Msa0740580 AT4G04710.4 35.570 149 90 4 1 146 339 484 5.90e-18 79.7
Msa0740580 AT1G50700.2 30.814 172 91 3 1 146 367 536 6.40e-18 79.7
Msa0740580 AT2G31500.1 32.667 150 96 4 1 147 360 507 2.18e-17 78.2
Msa0740580 AT4G20780.1 33.775 151 78 3 17 146 34 183 1.23e-16 73.2
Msa0740580 AT4G04740.2 35.606 132 81 3 2 132 363 491 1.77e-16 75.5
Msa0740580 AT5G44460.1 33.566 143 83 2 16 146 32 174 3.18e-15 69.3
Msa0740580 AT1G76040.3 37.624 101 62 1 1 101 405 504 4.81e-15 71.2
Msa0740580 AT4G21940.3 38.384 99 60 1 1 99 395 492 7.81e-15 70.9
Msa0740580 AT3G51850.2 34.906 106 68 1 1 106 348 452 1.74e-14 69.7
Msa0740580 AT2G17890.1 28.289 152 97 5 1 146 404 549 1.89e-14 69.7
Msa0740580 AT5G66210.1 27.632 152 98 4 1 146 358 503 3.09e-14 68.9
Msa0740580 AT5G66210.2 27.632 152 98 4 1 146 358 503 3.09e-14 68.9
Msa0740580 AT1G76640.1 29.932 147 97 2 4 146 14 158 4.20e-14 65.9
Msa0740580 AT1G76650.1 32.609 138 86 2 12 146 43 176 7.38e-14 65.9
Msa0740580 AT1G76650.3 32.609 138 86 2 12 146 43 176 7.38e-14 65.9
Msa0740580 AT5G49480.1 28.758 153 101 3 1 146 7 158 3.81e-13 63.5
Msa0740580 AT1G50700.3 36.364 99 62 1 1 99 367 464 5.26e-13 65.5
Msa0740580 AT1G21550.1 30.719 153 82 4 11 147 9 153 1.15e-12 62.0
Msa0740580 AT5G66210.3 26.718 131 90 3 1 125 358 488 1.91e-11 61.2
Msa0740580 AT1G76650.2 31.884 138 77 3 12 146 43 166 3.27e-11 58.5

Find 72 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGCAGATCTCTGAGTTTA+AGG 0.180468 5_1:-59591835 Msa0740580:CDS
AATTGTTCCATGTTTATAAA+TGG 0.226682 5_1:+59588960 None:intergenic
GTCCCTTTGTTTAAGTAGTT+TGG 0.236182 5_1:-59589037 Msa0740580:three_prime_UTR
GCCATCAGGTTAAGGAATTC+AGG 0.271939 5_1:+59589493 None:intergenic
ATTCAGCCTCAGTTGGGTTC+TGG 0.282126 5_1:+59589569 None:intergenic
ATGAAGTTGAACGATTTCTT+AGG 0.296802 5_1:-59588838 Msa0740580:three_prime_UTR
CCCAACTGAGGCTGAATTGC+AGG 0.330056 5_1:-59589563 Msa0740580:CDS
AATGTAAGAAGAAGAGAAAA+AGG 0.333507 5_1:+59591956 None:intergenic
CCATTGGAGGAAGGAAGATT+TGG 0.335907 5_1:+59591874 None:intergenic
GTGTTTGACAAGGATCAAAA+TGG 0.341319 5_1:-59589418 Msa0740580:CDS
CCTTCATCTTGCGGGCCATC+AGG 0.361788 5_1:+59589479 None:intergenic
ATCAGTATCCTTCATCTTGC+GGG 0.362125 5_1:+59589471 None:intergenic
CATCGCCATCCTTATCGAAT+AGG 0.413564 5_1:+59591802 None:intergenic
GAAAAGCACATGAACAGAAA+AGG 0.415904 5_1:-59589210 Msa0740580:three_prime_UTR
TCTTGCGGGCCATCAGGTTA+AGG 0.421012 5_1:+59589485 None:intergenic
AACGAAACCACCATTGGATA+TGG 0.429648 5_1:+59588800 None:intergenic
TCCTGCAATTCAGCCTCAGT+TGG 0.439040 5_1:+59589562 None:intergenic
CCCTGAATTCCTTAACCTGA+TGG 0.451258 5_1:-59589494 Msa0740580:CDS
AGCTTTCAGCCTATTCGATA+AGG 0.462509 5_1:-59591811 Msa0740580:CDS
CCTGCAATTCAGCCTCAGTT+GGG 0.478310 5_1:+59589563 None:intergenic
CTTCTGACTGCCATATCCAA+TGG 0.478746 5_1:-59588810 Msa0740580:three_prime_UTR
TACATGTGGGTGATTAGTAC+AGG 0.479141 5_1:-59588919 Msa0740580:three_prime_UTR
AAAAGCACATGAACAGAAAA+GGG 0.487092 5_1:-59589209 Msa0740580:three_prime_UTR
AGCTTCCTTGAGCTCTTCCT+CGG 0.488636 5_1:+59589447 None:intergenic
AATCCAAACTACTTAAACAA+AGG 0.490247 5_1:+59589034 None:intergenic
ATCCAAACTACTTAAACAAA+GGG 0.500148 5_1:+59589035 None:intergenic
ATTCGCGAGGCTGATGTTGA+TGG 0.500826 5_1:-59589316 Msa0740580:CDS
CGTCATGTCATGACAAATCT+CGG 0.504845 5_1:-59589373 Msa0740580:CDS
ATTGACACAATAGCATAAGA+TGG 0.507070 5_1:+59588891 None:intergenic
CCTGATGGCCCGCAAGATGA+AGG 0.511279 5_1:-59589479 Msa0740580:CDS
CCATCAGGTTAAGGAATTCA+GGG 0.519282 5_1:+59589494 None:intergenic
AATCAGTATCCTTCATCTTG+CGG 0.519720 5_1:+59589470 None:intergenic
GAGGCTGATGTTGATGGTGA+TGG 0.534263 5_1:-59589310 Msa0740580:CDS
TTGTGTGTGTGTCTGTGATG+TGG 0.535503 5_1:+59591928 None:intergenic
CCAAATCTTCCTTCCTCCAA+TGG 0.535910 5_1:-59591874 Msa0740580:exon
CACATGAACAGAAAAGGGAC+AGG 0.536834 5_1:-59589204 Msa0740580:three_prime_UTR
GAGGTTGATGCTGATGGAAA+CGG 0.536879 5_1:-59589529 Msa0740580:CDS
CATCACAGTCCCGAGCTCCT+TGG 0.540354 5_1:+59589603 None:intergenic
GTATTACTACCAAGGAGCTC+GGG 0.541622 5_1:-59589612 Msa0740580:CDS
TTGGTTACCATTTATAAACA+TGG 0.542858 5_1:-59588967 Msa0740580:three_prime_UTR
CTGACTGCCATATCCAATGG+TGG 0.548374 5_1:-59588807 Msa0740580:three_prime_UTR
AGCTTTCCGTGTGTTTGACA+AGG 0.552785 5_1:-59589428 Msa0740580:CDS
ATGAAGTACAAATGCATGGT+GGG 0.554370 5_1:+59589003 None:intergenic
ATCAACGAGGTTGATGCTGA+TGG 0.559241 5_1:-59589535 Msa0740580:CDS
GGGACTGTGATGAGGTCGCT+AGG 0.561210 5_1:-59589592 Msa0740580:CDS
TCGGTGAGTTGATCGGCCAT+TGG 0.562102 5_1:+59591858 None:intergenic
TGTATTACTACCAAGGAGCT+CGG 0.565857 5_1:-59589613 Msa0740580:CDS
CTGCTCGTCGGTGAGTTGAT+CGG 0.574149 5_1:+59591851 None:intergenic
GTGAGTTGATCGGCCATTGG+AGG 0.576018 5_1:+59591861 None:intergenic
AAGGAATTCAGGGAAATCAA+TGG 0.581358 5_1:+59589504 None:intergenic
AAGTCATGATGGCTAAGTGA+AGG 0.584665 5_1:-59589261 Msa0740580:exon
TGGTGCAACGAAACCACCAT+TGG 0.586684 5_1:+59588794 None:intergenic
AGGCTGATGTTGATGGTGAT+GGG 0.588891 5_1:-59589309 Msa0740580:CDS
TTCAGCCTATTCGATAAGGA+TGG 0.591776 5_1:-59591807 Msa0740580:CDS
TGATTCCGAGGAAGAGCTCA+AGG 0.592058 5_1:-59589452 Msa0740580:CDS
GGAGTTTGTCAAAGTCATGA+TGG 0.601225 5_1:-59589272 Msa0740580:CDS
GATGAAGGATACTGATTCCG+AGG 0.608389 5_1:-59589464 Msa0740580:CDS
GTTGATCGGCCATTGGAGGA+AGG 0.618554 5_1:+59591865 None:intergenic
TGATGGGCAGATCAACTATG+AGG 0.622339 5_1:-59589293 Msa0740580:CDS
CGAGATTTGTCATGACATGA+CGG 0.630044 5_1:+59589374 None:intergenic
CTTCATGACAGTGATTCAAG+AGG 0.634031 5_1:+59588855 None:intergenic
CTATTCGATAAGGATGGCGA+TGG 0.634576 5_1:-59591801 Msa0740580:intron
AGTCATGATGGCTAAGTGAA+GGG 0.635660 5_1:-59589260 Msa0740580:exon
AGGAGCTCGGGACTGTGATG+AGG 0.639412 5_1:-59589600 Msa0740580:CDS
TTTGATCCTTGTCAAACACA+CGG 0.647181 5_1:+59589422 None:intergenic
AATGAAGTACAAATGCATGG+TGG 0.655561 5_1:+59589002 None:intergenic
TGCAGGTTGTATTACTACCA+AGG 0.662670 5_1:-59589620 Msa0740580:intron
AAACTCAGAGATCTGCTCGT+CGG 0.668704 5_1:+59591839 None:intergenic
GCTAGGCCAGAACCCAACTG+AGG 0.683758 5_1:-59589575 Msa0740580:CDS
AGTTGACGAGATGATTCGCG+AGG 0.696963 5_1:-59589329 Msa0740580:CDS
ACATGAACAGAAAAGGGACA+GGG 0.707638 5_1:-59589203 Msa0740580:three_prime_UTR
ATTGCAGGACATGATCAACG+AGG 0.813894 5_1:-59589548 Msa0740580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAGCAAAAAAAATAAA+AGG + chr5_1:59588944-59588963 None:intergenic 10.0%
!! GAAAAAAAATTCATAAAAAT+TGG - chr5_1:59590334-59590353 Msa0740580:intron 10.0%
!!! ATTATTCTATTTTCATTATT+AGG - chr5_1:59591547-59591566 Msa0740580:intron 10.0%
!!! TTTTAGTTCTTTTTTTTCTA+TGG + chr5_1:59588695-59588714 None:intergenic 15.0%
!!! ACTTTTTTAGATTTGTTTTT+AGG - chr5_1:59589059-59589078 Msa0740580:three_prime_UTR 15.0%
!!! CTTTTTTAGATTTGTTTTTA+GGG - chr5_1:59589060-59589079 Msa0740580:three_prime_UTR 15.0%
!!! TGTTGTTTGATTTATATAAA+AGG - chr5_1:59589283-59589302 Msa0740580:CDS 15.0%
!!! ATATAAAAGGATTGTTTTTT+TGG - chr5_1:59589296-59589315 Msa0740580:CDS 15.0%
!!! AATTTTTTTTCAAAAGTATG+AGG + chr5_1:59590325-59590344 None:intergenic 15.0%
!! AATAACTCAATAATCAATAT+GGG - chr5_1:59590570-59590589 Msa0740580:intron 15.0%
!! TTGATATAACATGTAATATT+AGG - chr5_1:59590796-59590815 Msa0740580:intron 15.0%
!! TTATCAAAATTCCTTCAAAA+GGG + chr5_1:59589031-59589050 None:intergenic 20.0%
!! TTTATCAAAATTCCTTCAAA+AGG + chr5_1:59589032-59589051 None:intergenic 20.0%
!!! CGTAAGTTTTAATGTTTTTT+TGG - chr5_1:59589574-59589593 Msa0740580:CDS 20.0%
!! TATAATACTATTAGCTAGAT+CGG + chr5_1:59589720-59589739 None:intergenic 20.0%
!! GTTATAATTCTGTTTATTGA+AGG - chr5_1:59590213-59590232 Msa0740580:intron 20.0%
!!! ATAAAAATTGGAACTTGTTT+AGG - chr5_1:59590346-59590365 Msa0740580:intron 20.0%
!! GAATAACTCAATAATCAATA+TGG - chr5_1:59590569-59590588 Msa0740580:intron 20.0%
!!! TGCTTTTCAAATTTTAGTTA+TGG + chr5_1:59591480-59591499 None:intergenic 20.0%
!!! TATTAGGACATGTTTTATTT+CGG - chr5_1:59591563-59591582 Msa0740580:intron 20.0%
!! TTATAAATGGTAACCAAAAA+AGG + chr5_1:59591732-59591751 None:intergenic 20.0%
!! AATTGTTCCATGTTTATAAA+TGG + chr5_1:59591745-59591764 None:intergenic 20.0%
! AATGTAAGAAGAAGAGAAAA+AGG + chr5_1:59588749-59588768 None:intergenic 25.0%
!!! GATGGTTTGTTTGATTTTTT+AGG - chr5_1:59589219-59589238 Msa0740580:three_prime_UTR 25.0%
!!! ATGAATTTTAGTTGCATGTT+TGG - chr5_1:59589321-59589340 Msa0740580:CDS 25.0%
! TGATTGTGAATAACTCAATA+TGG - chr5_1:59589349-59589368 Msa0740580:CDS 25.0%
!! GAAAACTATGTTTTCAATTG+CGG - chr5_1:59589641-59589660 Msa0740580:intron 25.0%
! AATACACATCAACAATGATA+CGG + chr5_1:59589778-59589797 None:intergenic 25.0%
! TATCATTGTTGATGTGTATT+TGG - chr5_1:59589778-59589797 Msa0740580:intron 25.0%
! GTTATCAATTGCAAAAATAG+CGG - chr5_1:59589954-59589973 Msa0740580:intron 25.0%
! TAGCATAGAAAAATTTGAAC+GGG + chr5_1:59589980-59589999 None:intergenic 25.0%
! GTAGCATAGAAAAATTTGAA+CGG + chr5_1:59589981-59590000 None:intergenic 25.0%
!!! AATAAACCGCTGTTTTTAAA+AGG + chr5_1:59590156-59590175 None:intergenic 25.0%
! AGCGGTTTATTAAAAGTTTA+TGG - chr5_1:59590165-59590184 Msa0740580:intron 25.0%
! TAATTCTGTTTATTGAAGGA+CGG - chr5_1:59590217-59590236 Msa0740580:intron 25.0%
!! TAGATGGTAACTATTTGTTA+TGG - chr5_1:59590677-59590696 Msa0740580:intron 25.0%
!! ATCTTATTGATTACTGTTGT+AGG - chr5_1:59590752-59590771 Msa0740580:intron 25.0%
! ATGAAAAACATCAAAACTCA+CGG + chr5_1:59590857-59590876 None:intergenic 25.0%
!! TTTTGTCATGTATGTCTTAT+AGG - chr5_1:59591017-59591036 Msa0740580:intron 25.0%
! TTTGTCATGTATGTCTTATA+GGG - chr5_1:59591018-59591037 Msa0740580:intron 25.0%
!!! ATTAGGACATGTTTTATTTC+GGG - chr5_1:59591564-59591583 Msa0740580:intron 25.0%
! ATCCAAACTACTTAAACAAA+GGG + chr5_1:59591670-59591689 None:intergenic 25.0%
! AATCCAAACTACTTAAACAA+AGG + chr5_1:59591671-59591690 None:intergenic 25.0%
! AAAAATGAAGTACAAATGCA+TGG + chr5_1:59591706-59591725 None:intergenic 25.0%
!!! CTTCATTTTTCTTCCTTTTT+TGG - chr5_1:59591716-59591735 Msa0740580:intron 25.0%
! TTGGTTACCATTTATAAACA+TGG - chr5_1:59591735-59591754 Msa0740580:intron 25.0%
! TTTGAGCTTCAAAAAAATCA+TGG + chr5_1:59591931-59591950 None:intergenic 25.0%
!!! AGTTTTGACAAAAATCATGA+TGG - chr5_1:59591956-59591975 Msa0740580:five_prime_UTR 25.0%
!! TTATGTCATGTGTTTTTGTG+TGG - chr5_1:59589197-59589216 Msa0740580:three_prime_UTR 30.0%
TATCCAAATACAGATCAACA+CGG + chr5_1:59589499-59589518 None:intergenic 30.0%
! ATGTTTTCAATTGCGGAAAA+TGG - chr5_1:59589648-59589667 Msa0740580:intron 30.0%
AGCACGTGTAAATTTGAAAA+AGG + chr5_1:59589676-59589695 None:intergenic 30.0%
!! CTGTGAGTTTTGATGTTTTA+AGG - chr5_1:59589880-59589899 Msa0740580:intron 30.0%
! CAAATTTTTCTATGCTACAG+TGG - chr5_1:59589983-59590002 Msa0740580:intron 30.0%
! AATTGGAACTTGTTTAGGTT+TGG - chr5_1:59590351-59590370 Msa0740580:intron 30.0%
AATAGTTACCATCTAATAGC+TGG + chr5_1:59590672-59590691 None:intergenic 30.0%
TGAAAAACATCAAAACTCAC+GGG + chr5_1:59590856-59590875 None:intergenic 30.0%
TTCTCAATTGCGAAAAATAG+CGG - chr5_1:59590924-59590943 Msa0740580:intron 30.0%
!! TCACTTGTTAAGGTTTTAAC+TGG - chr5_1:59591046-59591065 Msa0740580:intron 30.0%
! AAAAGCACATGAACAGAAAA+GGG - chr5_1:59591493-59591512 Msa0740580:intron 30.0%
!!! GTCATTAGTTTTTTGTTGGT+CGG - chr5_1:59591586-59591605 Msa0740580:intron 30.0%
! CAATTTGTGCTTTTACATGT+GGG - chr5_1:59591770-59591789 Msa0740580:intron 30.0%
ATTGACACAATAGCATAAGA+TGG + chr5_1:59591814-59591833 None:intergenic 30.0%
ATGAAGTTGAACGATTTCTT+AGG - chr5_1:59591864-59591883 Msa0740580:exon 30.0%
GAAGAGAAAAAGGAGGATTA+AGG + chr5_1:59588739-59588758 None:intergenic 35.0%
GTAAGAAGAAGAGAAAAAGG+AGG + chr5_1:59588746-59588765 None:intergenic 35.0%
!! TTCCTTCAAAAGGGTATCAT+GGG + chr5_1:59589022-59589041 None:intergenic 35.0%
!! ATTCCTTCAAAAGGGTATCA+TGG + chr5_1:59589023-59589042 None:intergenic 35.0%
!! AGGGTTCTTGTTTGACTTTT+TGG - chr5_1:59589079-59589098 Msa0740580:three_prime_UTR 35.0%
GACAAGAGTAAAACGTGAAA+TGG + chr5_1:59589146-59589165 None:intergenic 35.0%
! TATCCGTGTTGATCTGTATT+TGG - chr5_1:59589493-59589512 Msa0740580:CDS 35.0%
ATTAGCTAGATCGGTACTAA+AGG + chr5_1:59589711-59589730 None:intergenic 35.0%
AAAACTCACAGTTGCATGAT+AGG + chr5_1:59589871-59589890 None:intergenic 35.0%
TTGTCAACTATTAGCTAGAG+TGG + chr5_1:59590024-59590043 None:intergenic 35.0%
ATACGCGATTTAGTAGTATG+CGG - chr5_1:59590130-59590149 Msa0740580:intron 35.0%
TTAATCAGATTAGCACGAAC+AGG + chr5_1:59590454-59590473 None:intergenic 35.0%
ATCCAAACACGTAACACTAA+GGG + chr5_1:59590545-59590564 None:intergenic 35.0%
AATCCAAACACGTAACACTA+AGG + chr5_1:59590546-59590565 None:intergenic 35.0%
!!! GCATTTTGGTCACTTTTTTG+TGG - chr5_1:59590626-59590645 Msa0740580:intron 35.0%
AGAATGAACCAGCTATTAGA+TGG - chr5_1:59590661-59590680 Msa0740580:intron 35.0%
TACTGTTGTAGGTGTGTATT+TGG - chr5_1:59590763-59590782 Msa0740580:intron 35.0%
ACTGTTGTAGGTGTGTATTT+GGG - chr5_1:59590764-59590783 Msa0740580:intron 35.0%
AAGGAATTCAGGGAAATCAA+TGG + chr5_1:59591201-59591220 None:intergenic 35.0%
AATCAGTATCCTTCATCTTG+CGG + chr5_1:59591235-59591254 None:intergenic 35.0%
TTTGATCCTTGTCAAACACA+CGG + chr5_1:59591283-59591302 None:intergenic 35.0%
GTGTTTGACAAGGATCAAAA+TGG - chr5_1:59591284-59591303 Msa0740580:intron 35.0%
! GAAAAGCACATGAACAGAAA+AGG - chr5_1:59591492-59591511 Msa0740580:intron 35.0%
!!! TCGGGTCATTAGTTTTTTGT+TGG - chr5_1:59591582-59591601 Msa0740580:intron 35.0%
! GTCCCTTTGTTTAAGTAGTT+TGG - chr5_1:59591665-59591684 Msa0740580:intron 35.0%
ATGAAGTACAAATGCATGGT+GGG + chr5_1:59591702-59591721 None:intergenic 35.0%
AATGAAGTACAAATGCATGG+TGG + chr5_1:59591703-59591722 None:intergenic 35.0%
! GCAATTTGTGCTTTTACATG+TGG - chr5_1:59591769-59591788 Msa0740580:intron 35.0%
AGCTTTCAGCCTATTCGATA+AGG - chr5_1:59588891-59588910 Msa0740580:three_prime_UTR 40.0%
TTCAGCCTATTCGATAAGGA+TGG - chr5_1:59588895-59588914 Msa0740580:three_prime_UTR 40.0%
! AACCCATGATACCCTTTTGA+AGG - chr5_1:59589017-59589036 Msa0740580:three_prime_UTR 40.0%
!! GTCATGTGTTTTTGTGTGGA+TGG - chr5_1:59589201-59589220 Msa0740580:three_prime_UTR 40.0%
! ACCTGATGGCTATTTCATTC+TGG + chr5_1:59589400-59589419 None:intergenic 40.0%
TGACTCATTACATTCGAGTC+AGG - chr5_1:59589547-59589566 Msa0740580:CDS 40.0%
AGACAGCTTGATACGAGATT+TGG + chr5_1:59590057-59590076 None:intergenic 40.0%
!! GGCTTGTTAAAATGCTGTCT+TGG - chr5_1:59590089-59590108 Msa0740580:intron 40.0%
!! ATGCGGCCTTTTAAAAACAG+CGG - chr5_1:59590147-59590166 Msa0740580:intron 40.0%
!! TGTTGTGCTGTTGTGCATTT+TGG - chr5_1:59590612-59590631 Msa0740580:intron 40.0%
! TAGGGCTGAATCACTTGTTA+AGG - chr5_1:59591036-59591055 Msa0740580:intron 40.0%
TGCAGGTTGTATTACTACCA+AGG - chr5_1:59591082-59591101 Msa0740580:intron 40.0%
TGTATTACTACCAAGGAGCT+CGG - chr5_1:59591089-59591108 Msa0740580:intron 40.0%
CCATCAGGTTAAGGAATTCA+GGG + chr5_1:59591211-59591230 None:intergenic 40.0%
ATCAGTATCCTTCATCTTGC+GGG + chr5_1:59591234-59591253 None:intergenic 40.0%
CGAGATTTGTCATGACATGA+CGG + chr5_1:59591331-59591350 None:intergenic 40.0%
CGTCATGTCATGACAAATCT+CGG - chr5_1:59591329-59591348 Msa0740580:intron 40.0%
GGAGTTTGTCAAAGTCATGA+TGG - chr5_1:59591430-59591449 Msa0740580:intron 40.0%
AAGTCATGATGGCTAAGTGA+AGG - chr5_1:59591441-59591460 Msa0740580:intron 40.0%
AGTCATGATGGCTAAGTGAA+GGG - chr5_1:59591442-59591461 Msa0740580:intron 40.0%
ACATGAACAGAAAAGGGACA+GGG - chr5_1:59591499-59591518 Msa0740580:intron 40.0%
TACATGTGGGTGATTAGTAC+AGG - chr5_1:59591783-59591802 Msa0740580:intron 40.0%
CTTCATGACAGTGATTCAAG+AGG + chr5_1:59591850-59591869 None:intergenic 40.0%
AACGAAACCACCATTGGATA+TGG + chr5_1:59591905-59591924 None:intergenic 40.0%
TTGTGTGTGTGTCTGTGATG+TGG + chr5_1:59588777-59588796 None:intergenic 45.0%
CCATTGGAGGAAGGAAGATT+TGG + chr5_1:59588831-59588850 None:intergenic 45.0%
CCAAATCTTCCTTCCTCCAA+TGG - chr5_1:59588828-59588847 Msa0740580:three_prime_UTR 45.0%
AAACTCAGAGATCTGCTCGT+CGG + chr5_1:59588866-59588885 None:intergenic 45.0%
CGAGCAGATCTCTGAGTTTA+AGG - chr5_1:59588867-59588886 Msa0740580:three_prime_UTR 45.0%
CATCGCCATCCTTATCGAAT+AGG + chr5_1:59588903-59588922 None:intergenic 45.0%
CTATTCGATAAGGATGGCGA+TGG - chr5_1:59588901-59588920 Msa0740580:three_prime_UTR 45.0%
GCCAGAATGAAATAGCCATC+AGG - chr5_1:59589396-59589415 Msa0740580:CDS 45.0%
TAGCCATCAGGTGTTTGTGA+TGG - chr5_1:59589408-59589427 Msa0740580:CDS 45.0%
ATGCCATCACAAACACCTGA+TGG + chr5_1:59589414-59589433 None:intergenic 45.0%
CAGGTGTTTGTGATGGCATT+TGG - chr5_1:59589415-59589434 Msa0740580:CDS 45.0%
AAGCTGTCTTGCAACAACAG+CGG - chr5_1:59590068-59590087 Msa0740580:intron 45.0%
TGTTTATTGAAGGACGGCGA+CGG - chr5_1:59590223-59590242 Msa0740580:intron 45.0%
CAGATTAGCACGAACAGGAA+AGG + chr5_1:59590449-59590468 None:intergenic 45.0%
AAACACGTAACACTAAGGGC+AGG + chr5_1:59590541-59590560 None:intergenic 45.0%
TGCCCTTAGTGTTACGTGTT+TGG - chr5_1:59590540-59590559 Msa0740580:intron 45.0%
AGCACAACACAGACATGAAG+GGG + chr5_1:59590601-59590620 None:intergenic 45.0%
CAGCACAACACAGACATGAA+GGG + chr5_1:59590602-59590621 None:intergenic 45.0%
ACAGCACAACACAGACATGA+AGG + chr5_1:59590603-59590622 None:intergenic 45.0%
GTCATGTGTACATTCCTGTC+AGG - chr5_1:59590828-59590847 Msa0740580:intron 45.0%
GTATTACTACCAAGGAGCTC+GGG - chr5_1:59591090-59591109 Msa0740580:intron 45.0%
ATTGCAGGACATGATCAACG+AGG - chr5_1:59591154-59591173 Msa0740580:intron 45.0%
!! ATCAACGAGGTTGATGCTGA+TGG - chr5_1:59591167-59591186 Msa0740580:intron 45.0%
!! GAGGTTGATGCTGATGGAAA+CGG - chr5_1:59591173-59591192 Msa0740580:intron 45.0%
CCCTGAATTCCTTAACCTGA+TGG - chr5_1:59591208-59591227 Msa0740580:intron 45.0%
GCCATCAGGTTAAGGAATTC+AGG + chr5_1:59591212-59591231 None:intergenic 45.0%
!! GATGAAGGATACTGATTCCG+AGG - chr5_1:59591238-59591257 Msa0740580:intron 45.0%
AGCTTTCCGTGTGTTTGACA+AGG - chr5_1:59591274-59591293 Msa0740580:intron 45.0%
!! AGGCTGATGTTGATGGTGAT+GGG - chr5_1:59591393-59591412 Msa0740580:intron 45.0%
! TGATGGGCAGATCAACTATG+AGG - chr5_1:59591409-59591428 Msa0740580:intron 45.0%
CACATGAACAGAAAAGGGAC+AGG - chr5_1:59591498-59591517 Msa0740580:intron 45.0%
CTTCTGACTGCCATATCCAA+TGG - chr5_1:59591892-59591911 Msa0740580:five_prime_UTR 45.0%
CTGGTTGCTCAAAATGCTGC+AGG - chr5_1:59591065-59591084 Msa0740580:intron 50.0%
ATTCAGCCTCAGTTGGGTTC+TGG + chr5_1:59591136-59591155 None:intergenic 50.0%
CCTGCAATTCAGCCTCAGTT+GGG + chr5_1:59591142-59591161 None:intergenic 50.0%
TCCTGCAATTCAGCCTCAGT+TGG + chr5_1:59591143-59591162 None:intergenic 50.0%
TGATTCCGAGGAAGAGCTCA+AGG - chr5_1:59591250-59591269 Msa0740580:intron 50.0%
AGCTTCCTTGAGCTCTTCCT+CGG + chr5_1:59591258-59591277 None:intergenic 50.0%
AGTTGACGAGATGATTCGCG+AGG - chr5_1:59591373-59591392 Msa0740580:intron 50.0%
ATTCGCGAGGCTGATGTTGA+TGG - chr5_1:59591386-59591405 Msa0740580:intron 50.0%
!! GAGGCTGATGTTGATGGTGA+TGG - chr5_1:59591392-59591411 Msa0740580:intron 50.0%
CTGACTGCCATATCCAATGG+TGG - chr5_1:59591895-59591914 Msa0740580:five_prime_UTR 50.0%
TGGTGCAACGAAACCACCAT+TGG + chr5_1:59591911-59591930 None:intergenic 50.0%
GTTGATCGGCCATTGGAGGA+AGG + chr5_1:59588840-59588859 None:intergenic 55.0%
!! GTGAGTTGATCGGCCATTGG+AGG + chr5_1:59588844-59588863 None:intergenic 55.0%
!! TCGGTGAGTTGATCGGCCAT+TGG + chr5_1:59588847-59588866 None:intergenic 55.0%
!! CTGCTCGTCGGTGAGTTGAT+CGG + chr5_1:59588854-59588873 None:intergenic 55.0%
AAAACTCACGGGAGCCTGAC+AGG + chr5_1:59590845-59590864 None:intergenic 55.0%
CCCAACTGAGGCTGAATTGC+AGG - chr5_1:59591139-59591158 Msa0740580:intron 55.0%
TCTTGCGGGCCATCAGGTTA+AGG + chr5_1:59591220-59591239 None:intergenic 55.0%
CATCACAGTCCCGAGCTCCT+TGG + chr5_1:59591102-59591121 None:intergenic 60.0%
AGGAGCTCGGGACTGTGATG+AGG - chr5_1:59591102-59591121 Msa0740580:intron 60.0%
GGGACTGTGATGAGGTCGCT+AGG - chr5_1:59591110-59591129 Msa0740580:intron 60.0%
GCTAGGCCAGAACCCAACTG+AGG - chr5_1:59591127-59591146 Msa0740580:intron 60.0%
CCTTCATCTTGCGGGCCATC+AGG + chr5_1:59591226-59591245 None:intergenic 60.0%
CCTGATGGCCCGCAAGATGA+AGG - chr5_1:59591223-59591242 Msa0740580:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 59588690 59592034 59588690 ID=Msa0740580;Name=Msa0740580
chr5_1 mRNA 59588690 59592034 59588690 ID=Msa0740580-mRNA-1;Parent=Msa0740580;Name=Msa0740580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=157|1|1|1|1|1|2|574|149
chr5_1 exon 59588690 59589637 59588690 ID=Msa0740580-mRNA-1:exon:17196;Parent=Msa0740580-mRNA-1
chr5_1 exon 59591802 59592034 59591802 ID=Msa0740580-mRNA-1:exon:17195;Parent=Msa0740580-mRNA-1
chr5_1 five_prime_UTR 59591878 59592034 59591878 ID=Msa0740580-mRNA-1:five_prime_utr;Parent=Msa0740580-mRNA-1
chr5_1 CDS 59591802 59591877 59591802 ID=Msa0740580-mRNA-1:cds;Parent=Msa0740580-mRNA-1
chr5_1 CDS 59589264 59589637 59589264 ID=Msa0740580-mRNA-1:cds;Parent=Msa0740580-mRNA-1
chr5_1 three_prime_UTR 59588690 59589263 59588690 ID=Msa0740580-mRNA-1:three_prime_utr;Parent=Msa0740580-mRNA-1
Gene Sequence

>Msa0740580

ATGGCCGATCAACTCACCGACGAGCAGATCTCTGAGTTTAAGGAAGCTTTCAGCCTATTCGATAAGGATGGCGATGGTTGTATTACTACCAAGGAGCTCGGGACTGTGATGAGGTCGCTAGGCCAGAACCCAACTGAGGCTGAATTGCAGGACATGATCAACGAGGTTGATGCTGATGGAAACGGTACCATTGATTTCCCTGAATTCCTTAACCTGATGGCCCGCAAGATGAAGGATACTGATTCCGAGGAAGAGCTCAAGGAAGCTTTCCGTGTGTTTGACAAGGATCAAAATGGTTTCATCTCTGCAGCTGAGCTCCGTCATGTCATGACAAATCTCGGAGAGAAGCTGACTGATGAAGAAGTTGACGAGATGATTCGCGAGGCTGATGTTGATGGTGATGGGCAGATCAACTATGAGGAGTTTGTCAAAGTCATGATGGCTAAGTGA
Protein sequence

>Msa0740580

MADQLTDEQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK*