Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780240 | XP_003617304.2 | 94.293 | 368 | 7 | 1 | 1 | 354 | 1 | 368 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780240 | sp|Q54PM7|NAGK_DICDI | 33.434 | 332 | 181 | 8 | 34 | 341 | 1 | 316 | 9.03e-49 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780240 | A0A396HWA9 | 94.293 | 368 | 7 | 1 | 1 | 354 | 1 | 368 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0664970 | Msa0780240 | 0.808643 | 2.800831e-50 | -8.615850e-47 |
| Msa0741250 | Msa0780240 | 0.817344 | 3.462775e-52 | -8.615850e-47 |
| Msa0780240 | Msa0784860 | 0.805127 | 1.550893e-49 | -8.615850e-47 |
| Msa0780240 | Msa1224810 | 0.808198 | 3.484731e-50 | -8.615850e-47 |
| Msa0780240 | Msa1387200 | 0.800187 | 1.621415e-48 | -8.615850e-47 |
| Msa0372340 | Msa0780240 | 0.805688 | 1.182797e-49 | -8.615850e-47 |
| Msa0545080 | Msa0780240 | 0.801605 | 8.321065e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780240 | MtrunA17_Chr5g0442201 | 94.293 | 368 | 7 | 1 | 1 | 354 | 1 | 368 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780240 | AT1G30540.1 | 65.797 | 345 | 97 | 4 | 13 | 343 | 12 | 349 | 1.79e-156 | 443 |
| Msa0780240 | AT1G30540.2 | 69.485 | 272 | 69 | 1 | 86 | 343 | 7 | 278 | 2.28e-133 | 382 |
| Msa0780240 | AT1G30540.3 | 69.485 | 272 | 69 | 1 | 86 | 343 | 7 | 278 | 2.28e-133 | 382 |
| Msa0780240 | AT1G30540.4 | 64.931 | 288 | 80 | 4 | 13 | 286 | 12 | 292 | 4.11e-125 | 362 |
Find 111 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTCGTCAGCATTGTATT+TGG | 0.215745 | 5_2:-61948480 | None:intergenic |
| AAGCACCCCAGGAAAGTATT+TGG | 0.301399 | 5_2:-61949506 | None:intergenic |
| TGCATTTCCAAATACTTTCC+TGG | 0.311592 | 5_2:+61949499 | Msa0780240:CDS |
| TATACTGACCTTAGGTCTAA+TGG | 0.311823 | 5_2:-61949530 | None:intergenic |
| AATCTCTTCCTATTCTTTCA+AGG | 0.314650 | 5_2:+61945546 | Msa0780240:CDS |
| ATTCTTTCAAGGGCTGTTGC+TGG | 0.326969 | 5_2:+61945557 | Msa0780240:CDS |
| GCTAAAATCGGCGCAAGAAT+TGG | 0.333697 | 5_2:+61948780 | Msa0780240:CDS |
| TTCTTCTGAGAGATAAAGAT+TGG | 0.354119 | 5_2:-61945185 | None:intergenic |
| GAAGCAAGGGCTGCAGGCGC+AGG | 0.355339 | 5_2:+61947395 | Msa0780240:CDS |
| TTTACTTTACAGCCAAGAAT+TGG | 0.355476 | 5_2:-61949858 | None:intergenic |
| TGCTAATAAAATATAAACTT+TGG | 0.357610 | 5_2:-61949909 | None:intergenic |
| TTGGATGTACATAAACTATA+TGG | 0.379029 | 5_2:-61949890 | None:intergenic |
| ATTGTCACATAAATTACTAT+TGG | 0.379159 | 5_2:+61950091 | Msa0780240:three_prime_UTR |
| GCATATGGATTTACTGAAGA+TGG | 0.381525 | 5_2:+61947368 | Msa0780240:CDS |
| TCTTCTGCAGAAGAATTGAT+TGG | 0.381604 | 5_2:+61948525 | Msa0780240:CDS |
| TCAAGTGTTAAAGCTGTTGT+AGG | 0.385362 | 5_2:+61948805 | Msa0780240:CDS |
| GGAGCAATTGATTCTTGATT+CGG | 0.389234 | 5_2:+61945364 | Msa0780240:CDS |
| GGAACAATTGGCAAACTTCA+TGG | 0.391537 | 5_2:+61947314 | Msa0780240:CDS |
| ATACTGACCTTAGGTCTAAT+GGG | 0.413875 | 5_2:-61949529 | None:intergenic |
| AGAATTCTTTGTTGATCTGT+TGG | 0.418135 | 5_2:-61947029 | None:intergenic |
| AAAGAATTCTCAGTTGGCTT+AGG | 0.420781 | 5_2:+61947042 | Msa0780240:CDS |
| AAATAAGATCTTGCTAAAAT+CGG | 0.422645 | 5_2:+61948768 | Msa0780240:CDS |
| TTCGGTCCGAGCTGTATGTT+TGG | 0.427209 | 5_2:+61946986 | Msa0780240:CDS |
| ATCTCTTCCTATTCTTTCAA+GGG | 0.442969 | 5_2:+61945547 | Msa0780240:CDS |
| GCATTTCCAAATACTTTCCT+GGG | 0.443620 | 5_2:+61949500 | Msa0780240:CDS |
| CATGGATGTGTATTAATTGC+TGG | 0.450862 | 5_2:+61947332 | Msa0780240:CDS |
| GCTCTTGCAAGTGGAACAAT+TGG | 0.455844 | 5_2:+61947302 | Msa0780240:CDS |
| TTCTACAGAAATTGCTGCAA+GGG | 0.456074 | 5_2:+61946908 | Msa0780240:intron |
| TGGAACGAGTGCTGCAATGC+GGG | 0.460985 | 5_2:-61948707 | None:intergenic |
| GCAAACACAAAGTGGGATGT+AGG | 0.461172 | 5_2:+61949460 | Msa0780240:CDS |
| GGACTTACGCAGATCCATCT+TGG | 0.461737 | 5_2:+61948683 | Msa0780240:CDS |
| TTGGAGCAGCATGGTTAGCT+TGG | 0.461737 | 5_2:+61949727 | Msa0780240:CDS |
| TACTCTGGTGGAATCATAAG+AGG | 0.465867 | 5_2:-61950160 | None:intergenic |
| AGACTTGGATTGTGCGGTAA+AGG | 0.467200 | 5_2:+61948829 | Msa0780240:CDS |
| TTAGCAAATGGTACATTGGT+AGG | 0.467427 | 5_2:+61949926 | Msa0780240:three_prime_UTR |
| GACTTACGCAGATCCATCTT+GGG | 0.471146 | 5_2:+61948684 | Msa0780240:CDS |
| GGCACAGGAACCATTGCATA+TGG | 0.473099 | 5_2:+61947353 | Msa0780240:CDS |
| CTTCTGCAGAAGAATTGATT+GGG | 0.475265 | 5_2:+61948526 | Msa0780240:CDS |
| TCTAATCATAATAGTGTTGG+AGG | 0.480939 | 5_2:+61945584 | Msa0780240:CDS |
| GGTCTAATGGGAAGCACCCC+AGG | 0.482189 | 5_2:-61949517 | None:intergenic |
| GGAAAAGAAGCAAGGGCTGC+AGG | 0.483573 | 5_2:+61947389 | Msa0780240:CDS |
| GCTGTATGTTTGGCTGTATC+CGG | 0.484239 | 5_2:+61946996 | Msa0780240:CDS |
| TTTCCGCTTGTCATGGTTGG+TGG | 0.487092 | 5_2:+61949427 | Msa0780240:CDS |
| GCAACAGCCCTTGAAAGAAT+AGG | 0.488351 | 5_2:-61945554 | None:intergenic |
| AAAGCTGTTGTAGGGAGACT+TGG | 0.491123 | 5_2:+61948814 | Msa0780240:CDS |
| GATTCGGAGATGAAGAGGTA+TGG | 0.493890 | 5_2:+61945380 | Msa0780240:CDS |
| AGAATCAATTGCTCCTTCTC+CGG | 0.496172 | 5_2:-61945356 | None:intergenic |
| ACATATAACCTCACATCACT+TGG | 0.500294 | 5_2:-61947260 | None:intergenic |
| TCTGCACAGGATACTACAAC+TGG | 0.504981 | 5_2:-61948727 | None:intergenic |
| GTGCCTCACTTAGCAAGGAC+AGG | 0.508933 | 5_2:-61949961 | None:intergenic |
| GCCGTTGCTGCTCTTGCAAG+TGG | 0.509723 | 5_2:+61947293 | Msa0780240:CDS |
| TGCTCTAATCATAATAGTGT+TGG | 0.509813 | 5_2:+61945581 | Msa0780240:CDS |
| TATGGTTACACTTACACCTC+TGG | 0.510270 | 5_2:-61950054 | None:intergenic |
| GTAGTATCCTGTGCAGAGGC+TGG | 0.511756 | 5_2:+61948733 | Msa0780240:CDS |
| AACCATGCTGCTCCAACAGC+AGG | 0.514568 | 5_2:-61949720 | None:intergenic |
| TCTTCTGAGAGATAAAGATT+GGG | 0.516082 | 5_2:-61945184 | None:intergenic |
| GTGTGGTTCAAAACGATCTT+CGG | 0.516505 | 5_2:+61946968 | Msa0780240:CDS |
| ATCAACAAAGAATTCTCAGT+TGG | 0.518161 | 5_2:+61947036 | Msa0780240:CDS |
| ATTCAAATATCTTATGATGC+CGG | 0.518796 | 5_2:+61945337 | Msa0780240:exon |
| GGAAACATTAGAGCAAGTTA+TGG | 0.525125 | 5_2:+61946929 | Msa0780240:CDS |
| GGTAACTATTTACACAAGCA+AGG | 0.526678 | 5_2:-61950033 | None:intergenic |
| CAAACACAAAGTGGGATGTA+GGG | 0.530904 | 5_2:+61949461 | Msa0780240:CDS |
| AACAATGTTTCTGTCTCAGA+TGG | 0.535011 | 5_2:+61945437 | Msa0780240:CDS |
| TCCACTTGCAAGAGCAGCAA+CGG | 0.536786 | 5_2:-61947294 | None:intergenic |
| ATATCTTATGATGCCGGAGA+AGG | 0.542036 | 5_2:+61945343 | Msa0780240:exon |
| GCTGCAATGCGGGCCCAAGA+TGG | 0.543762 | 5_2:-61948697 | None:intergenic |
| ATTCGGAGATGAAGAGGTAT+GGG | 0.545690 | 5_2:+61945381 | Msa0780240:CDS |
| TTTATTAGCAAATGGTACAT+TGG | 0.546696 | 5_2:+61949922 | Msa0780240:three_prime_UTR |
| GGTATGGGAATGGTGAAACA+TGG | 0.554635 | 5_2:+61945396 | Msa0780240:CDS |
| CTCCCTGTCCTTGCTAAGTG+AGG | 0.554977 | 5_2:+61949958 | Msa0780240:three_prime_UTR |
| TTCTTTGTTGATCTGTTGGA+TGG | 0.558478 | 5_2:-61947025 | None:intergenic |
| CTCATCGCCAGCCTCTGCAC+AGG | 0.559171 | 5_2:-61948740 | None:intergenic |
| GTAACTATTTACACAAGCAA+GGG | 0.563627 | 5_2:-61950032 | None:intergenic |
| GGTGCTTCCCATTAGACCTA+AGG | 0.571799 | 5_2:+61949522 | Msa0780240:CDS |
| TTCTTGATTCGGAGATGAAG+AGG | 0.573073 | 5_2:+61945375 | Msa0780240:CDS |
| TTCAGTAAATCCATATGCAA+TGG | 0.574987 | 5_2:-61947363 | None:intergenic |
| CAAGTGTTAAAGCTGTTGTA+GGG | 0.578022 | 5_2:+61948806 | Msa0780240:CDS |
| GCAGATGCGCTTTCAAAGTG+TGG | 0.579158 | 5_2:+61946951 | Msa0780240:CDS |
| CAATAAAGACAACTCTCGTA+TGG | 0.580939 | 5_2:-61950072 | None:intergenic |
| TTTCTACAGAAATTGCTGCA+AGG | 0.590652 | 5_2:+61946907 | Msa0780240:intron |
| GCTGACAATTCATGATGAAG+TGG | 0.591276 | 5_2:+61949790 | Msa0780240:exon |
| TCAATGTTGACGGAGAAGAA+AGG | 0.592303 | 5_2:-61945300 | None:intergenic |
| TTCTTGAAGCAAACACAAAG+TGG | 0.592334 | 5_2:+61949452 | Msa0780240:CDS |
| CTGAAGATGGAAAAGAAGCA+AGG | 0.600282 | 5_2:+61947381 | Msa0780240:CDS |
| GTATGGGAATGGTGAAACAT+GGG | 0.605865 | 5_2:+61945397 | Msa0780240:CDS |
| ACGCCACCAACCATGACAAG+CGG | 0.606206 | 5_2:-61949430 | None:intergenic |
| GAGATGAAGAGGTATGGGAA+TGG | 0.608412 | 5_2:+61945386 | Msa0780240:CDS |
| TGAAGATGGAAAAGAAGCAA+GGG | 0.610105 | 5_2:+61947382 | Msa0780240:CDS |
| AAACTGTGCCTCACTTAGCA+AGG | 0.617081 | 5_2:-61949966 | None:intergenic |
| ATAGAAGCACATGATGGTCG+TGG | 0.617860 | 5_2:+61948456 | Msa0780240:CDS |
| AGTTGTAGTATCCTGTGCAG+AGG | 0.621004 | 5_2:+61948729 | Msa0780240:CDS |
| ATCTGTTGGATGGTTAACAC+CGG | 0.625271 | 5_2:-61947015 | None:intergenic |
| TCTTGAAGCAAACACAAAGT+GGG | 0.629952 | 5_2:+61949453 | Msa0780240:CDS |
| AAACAGGTAGAGCCTGCTGT+TGG | 0.632953 | 5_2:+61949708 | Msa0780240:intron |
| CATTTCCAAATACTTTCCTG+GGG | 0.634649 | 5_2:+61949501 | Msa0780240:CDS |
| TTTCATGAAAGAATATAACA+AGG | 0.640802 | 5_2:+61949755 | Msa0780240:CDS |
| GCGGTAATAGAAGCACATGA+TGG | 0.649285 | 5_2:+61948450 | Msa0780240:CDS |
| CTTGTGTAAATAGTTACCAG+AGG | 0.649586 | 5_2:+61950038 | Msa0780240:three_prime_UTR |
| TGTGTATTAATTGCTGGCAC+AGG | 0.650395 | 5_2:+61947338 | Msa0780240:CDS |
| CATACAAATACAAACAGTTG+AGG | 0.651810 | 5_2:-61945489 | None:intergenic |
| CTGTGCAGAGGCTGGCGATG+AGG | 0.651932 | 5_2:+61948741 | Msa0780240:CDS |
| ATATATTTCCAAGTGATGTG+AGG | 0.653488 | 5_2:+61947252 | Msa0780240:CDS |
| AGCCTGCTGTTGGAGCAGCA+TGG | 0.659631 | 5_2:+61949718 | Msa0780240:CDS |
| ATCTGCGCAGGCACTAACTG+CGG | 0.661132 | 5_2:+61948431 | Msa0780240:intron |
| TGCCTCACTTAGCAAGGACA+GGG | 0.661481 | 5_2:-61949960 | None:intergenic |
| ACTTCATCATGAATTGTCAG+CGG | 0.664278 | 5_2:-61949788 | None:intergenic |
| TTGACGGAGAAGAAAGGACA+AGG | 0.668440 | 5_2:-61945294 | None:intergenic |
| ATACAGCCAAACATACAGCT+CGG | 0.679468 | 5_2:-61946992 | None:intergenic |
| CTGGAACGAGTGCTGCAATG+CGG | 0.681899 | 5_2:-61948708 | None:intergenic |
| GTAGGGAGACTTGGATTGTG+CGG | 0.692237 | 5_2:+61948823 | Msa0780240:CDS |
| CTCACTTAGCAAGGACAGGG+AGG | 0.703456 | 5_2:-61949957 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATTATTACTTTCATT+TGG | + | chr5_2:61948309-61948328 | Msa0780240:intron | 10.0% |
| !! | TTAAATTTAAAAGAAATTGA+TGG | + | chr5_2:61949307-61949326 | Msa0780240:intron | 10.0% |
| !!! | ATAGAATGAAATTTTAAATT+TGG | + | chr5_2:61949677-61949696 | Msa0780240:intron | 10.0% |
| !! | AAAATATTGATAAAAAAGAA+AGG | + | chr5_2:61949824-61949843 | Msa0780240:three_prime_UTR | 10.0% |
| !!! | ATAATTTTGAATGAATGATT+AGG | + | chr5_2:61945748-61945767 | Msa0780240:intron | 15.0% |
| !! | AACTTATAGTTTATATGAAA+AGG | - | chr5_2:61947645-61947664 | None:intergenic | 15.0% |
| !! | TTATTGATATAAACTGTTTA+TGG | + | chr5_2:61947690-61947709 | Msa0780240:intron | 15.0% |
| !!! | GAAAGTAATAATTTTTACAT+TGG | - | chr5_2:61948306-61948325 | None:intergenic | 15.0% |
| !! | TGCTAATAAAATATAAACTT+TGG | - | chr5_2:61949912-61949931 | None:intergenic | 15.0% |
| !!! | GTTTATATTTTATTAGCAAA+TGG | + | chr5_2:61949914-61949933 | Msa0780240:three_prime_UTR | 15.0% |
| !! | ATTATGTAGTAATACTTGTT+TGG | + | chr5_2:61945718-61945737 | Msa0780240:intron | 20.0% |
| !! | ATGTAAGAAATTCATCATTT+AGG | + | chr5_2:61946160-61946179 | Msa0780240:intron | 20.0% |
| !! | TTGTTTACATTAATAGTGTT+TGG | + | chr5_2:61946353-61946372 | Msa0780240:intron | 20.0% |
| !! | TACAAAGATTTGTCAAATAA+CGG | + | chr5_2:61946522-61946541 | Msa0780240:intron | 20.0% |
| !!! | CATTTGTTTTATATTGTAGA+AGG | + | chr5_2:61946730-61946749 | Msa0780240:intron | 20.0% |
| !! | AAAAGGTAACATCAATTTAT+AGG | - | chr5_2:61947893-61947912 | None:intergenic | 20.0% |
| !! | ATAGATTTGAAGAAAGAAAA+AGG | - | chr5_2:61947910-61947929 | None:intergenic | 20.0% |
| !! | AAAAATGGATATAATCAAGT+TGG | - | chr5_2:61948370-61948389 | None:intergenic | 20.0% |
| !!! | TCAAAATGGCTTTAAATTAT+AGG | - | chr5_2:61948615-61948634 | None:intergenic | 20.0% |
| !! | AAATAAGATCTTGCTAAAAT+CGG | + | chr5_2:61948768-61948787 | Msa0780240:CDS | 20.0% |
| !! | TTTACCTCATATTAATAGTA+TGG | + | chr5_2:61949243-61949262 | Msa0780240:intron | 20.0% |
| !! | TTATCCATACTATTAATATG+AGG | - | chr5_2:61949250-61949269 | None:intergenic | 20.0% |
| !!! | AAATTTTGAAGTAATTGACT+TGG | + | chr5_2:61949268-61949287 | Msa0780240:intron | 20.0% |
| !!! | TGACTGATATTATGTAATTT+TGG | + | chr5_2:61949387-61949406 | Msa0780240:intron | 20.0% |
| !! | TTTCATGAAAGAATATAACA+AGG | + | chr5_2:61949755-61949774 | Msa0780240:CDS | 20.0% |
| !! | ATTGTCACATAAATTACTAT+TGG | + | chr5_2:61950091-61950110 | Msa0780240:three_prime_UTR | 20.0% |
| ! | AAGAGAAAAATCAATGTTGA+CGG | - | chr5_2:61945313-61945332 | None:intergenic | 25.0% |
| ! | ATTCAAATATCTTATGATGC+CGG | + | chr5_2:61945337-61945356 | Msa0780240:exon | 25.0% |
| ! | TGAGAAAAATGAATGATCAT+AGG | - | chr5_2:61945515-61945534 | None:intergenic | 25.0% |
| !!! | TTCATTCTCTATCTCTTTTT+TGG | + | chr5_2:61945617-61945636 | Msa0780240:intron | 25.0% |
| !!! | TTTATTTTCTGGGTTTATTG+AGG | + | chr5_2:61945663-61945682 | Msa0780240:intron | 25.0% |
| ! | TTACATTGATAAACCTTGTT+TGG | + | chr5_2:61945775-61945794 | Msa0780240:intron | 25.0% |
| ! | ATCCTCAATCCAAAAAAAAA+GGG | - | chr5_2:61945826-61945845 | None:intergenic | 25.0% |
| ! | TATCCTCAATCCAAAAAAAA+AGG | - | chr5_2:61945827-61945846 | None:intergenic | 25.0% |
| ! | TTATACTAAACAGCTTATCA+TGG | - | chr5_2:61945924-61945943 | None:intergenic | 25.0% |
| ! | TGATAAGCTGTTTAGTATAA+AGG | + | chr5_2:61945924-61945943 | Msa0780240:intron | 25.0% |
| ! | TATAAAGGTTTGTCATATAG+CGG | + | chr5_2:61945939-61945958 | Msa0780240:intron | 25.0% |
| !!! | GAAAAAGAACTTGTTTTTAC+TGG | + | chr5_2:61946112-61946131 | Msa0780240:intron | 25.0% |
| ! | TAGGAAAATCTGTTATGTTA+TGG | + | chr5_2:61946179-61946198 | Msa0780240:intron | 25.0% |
| !!! | AGTTTTGATTTTTTGTTTCC+TGG | + | chr5_2:61946287-61946306 | Msa0780240:intron | 25.0% |
| !!! | GTTTTGATTTTTTGTTTCCT+GGG | + | chr5_2:61946288-61946307 | Msa0780240:intron | 25.0% |
| ! | TATTGCAGAACAATAACAAT+TGG | - | chr5_2:61946492-61946511 | None:intergenic | 25.0% |
| ! | CTAAATGATGAATTTCTAAC+AGG | - | chr5_2:61946783-61946802 | None:intergenic | 25.0% |
| ! | CTGTTAGAAATTCATCATTT+AGG | + | chr5_2:61946781-61946800 | Msa0780240:intron | 25.0% |
| ! | ACTTAAGAGTAATATTAGCA+GGG | - | chr5_2:61947121-61947140 | None:intergenic | 25.0% |
| ! | TACTTAAGAGTAATATTAGC+AGG | - | chr5_2:61947122-61947141 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | - | chr5_2:61947539-61947558 | None:intergenic | 25.0% |
| ! | TAAGCTATCTCTATAACAAA+AGG | + | chr5_2:61947604-61947623 | Msa0780240:intron | 25.0% |
| ! | ACATCAATCATAATATGACT+AGG | + | chr5_2:61947951-61947970 | Msa0780240:intron | 25.0% |
| !!! | ATGACTAGGAATTGTTTTTT+TGG | + | chr5_2:61947965-61947984 | Msa0780240:intron | 25.0% |
| !!! | TTTTTTGGAAAAAGAACCTT+CGG | + | chr5_2:61947980-61947999 | Msa0780240:intron | 25.0% |
| !! | TGAATCTTATTGGATGTTTT+TGG | - | chr5_2:61948162-61948181 | None:intergenic | 25.0% |
| !!! | CAATAAGATTCAGTTTTGTT+CGG | + | chr5_2:61948170-61948189 | Msa0780240:intron | 25.0% |
| ! | GCAAAAATGTCAACAAAAAA+TGG | - | chr5_2:61948385-61948404 | None:intergenic | 25.0% |
| !! | TTTTGCTTTAATATTTGCAG+TGG | + | chr5_2:61948399-61948418 | Msa0780240:intron | 25.0% |
| ! | TTTAATATTTGCAGTGGATA+TGG | + | chr5_2:61948405-61948424 | Msa0780240:intron | 25.0% |
| ! | ATTACATGTAGATCTTAATG+TGG | + | chr5_2:61948995-61949014 | Msa0780240:intron | 25.0% |
| !! | AAATTACGATTTTTACTGCT+TGG | + | chr5_2:61949177-61949196 | Msa0780240:intron | 25.0% |
| ! | AATTTAAATGAATGCTCTAG+AGG | - | chr5_2:61949294-61949313 | None:intergenic | 25.0% |
| ! | TACACAAATCATCATCATAT+AGG | - | chr5_2:61949363-61949382 | None:intergenic | 25.0% |
| !! | AAATTTGGTTTATTGCAAAC+AGG | + | chr5_2:61949692-61949711 | Msa0780240:intron | 25.0% |
| ! | TTGGATGTACATAAACTATA+TGG | - | chr5_2:61949893-61949912 | None:intergenic | 25.0% |
| ! | TTTATTAGCAAATGGTACAT+TGG | + | chr5_2:61949922-61949941 | Msa0780240:three_prime_UTR | 25.0% |
| ! | TCTTCTGAGAGATAAAGATT+GGG | - | chr5_2:61945187-61945206 | None:intergenic | 30.0% |
| ! | TTCTTCTGAGAGATAAAGAT+TGG | - | chr5_2:61945188-61945207 | None:intergenic | 30.0% |
| CATACAAATACAAACAGTTG+AGG | - | chr5_2:61945492-61945511 | None:intergenic | 30.0% | |
| AATCTCTTCCTATTCTTTCA+AGG | + | chr5_2:61945546-61945565 | Msa0780240:CDS | 30.0% | |
| ATCTCTTCCTATTCTTTCAA+GGG | + | chr5_2:61945547-61945566 | Msa0780240:CDS | 30.0% | |
| TGCTCTAATCATAATAGTGT+TGG | + | chr5_2:61945581-61945600 | Msa0780240:CDS | 30.0% | |
| ! | TCTAATCATAATAGTGTTGG+AGG | + | chr5_2:61945584-61945603 | Msa0780240:CDS | 30.0% |
| !!! | TTCAATTCCCCCTTTTTTTT+TGG | + | chr5_2:61945814-61945833 | Msa0780240:intron | 30.0% |
| TCCTCAATCCAAAAAAAAAG+GGG | - | chr5_2:61945825-61945844 | None:intergenic | 30.0% | |
| !!! | TTTTTTTGGATTGAGGATAG+TGG | + | chr5_2:61945828-61945847 | Msa0780240:intron | 30.0% |
| !!! | TTTTTTGGATTGAGGATAGT+GGG | + | chr5_2:61945829-61945848 | Msa0780240:intron | 30.0% |
| GTGATTGATTGTTTAATACC+AGG | + | chr5_2:61946047-61946066 | Msa0780240:intron | 30.0% | |
| ! | TTAATACCAGGAGAATTTTG+AGG | + | chr5_2:61946059-61946078 | Msa0780240:intron | 30.0% |
| TACCATTGTTTAGTCCATAT+TGG | + | chr5_2:61946202-61946221 | Msa0780240:intron | 30.0% | |
| ATCGATAATAACCTCCAATA+TGG | - | chr5_2:61946219-61946238 | None:intergenic | 30.0% | |
| !!! | GGTTGTTTGACTTCATTTTT+TGG | + | chr5_2:61946254-61946273 | Msa0780240:intron | 30.0% |
| !!! | TTTTTGTTTTCTGGGTTTGT+TGG | + | chr5_2:61946323-61946342 | Msa0780240:intron | 30.0% |
| !!! | TTTTGTTTTCTGGGTTTGTT+GGG | + | chr5_2:61946324-61946343 | Msa0780240:intron | 30.0% |
| TAATCCACAAGAAAAAAAGG+GGG | - | chr5_2:61946402-61946421 | None:intergenic | 30.0% | |
| CTAATCCACAAGAAAAAAAG+GGG | - | chr5_2:61946403-61946422 | None:intergenic | 30.0% | |
| CCTAATCCACAAGAAAAAAA+GGG | - | chr5_2:61946404-61946423 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTTCTTGTGGATTA+GGG | + | chr5_2:61946402-61946421 | Msa0780240:intron | 30.0% |
| GATTCAATGTTGTCAAATAG+TGG | + | chr5_2:61946440-61946459 | Msa0780240:intron | 30.0% | |
| ! | CGATACACTATTTTGTACAA+AGG | + | chr5_2:61946551-61946570 | Msa0780240:intron | 30.0% |
| TACAATACTAGGAGAATTTG+AGG | + | chr5_2:61946669-61946688 | Msa0780240:intron | 30.0% | |
| TAGGAAAAACTGCTATGTTA+TGG | + | chr5_2:61946800-61946819 | Msa0780240:intron | 30.0% | |
| ATCATATTTGTCCTAAACGA+TGG | - | chr5_2:61946828-61946847 | None:intergenic | 30.0% | |
| AAAATGAAGATCACATTGCA+AGG | + | chr5_2:61946849-61946868 | Msa0780240:intron | 30.0% | |
| AGCAATTTCTGTAGAAAAAG+TGG | - | chr5_2:61946904-61946923 | None:intergenic | 30.0% | |
| AGAATTCTTTGTTGATCTGT+TGG | - | chr5_2:61947032-61947051 | None:intergenic | 30.0% | |
| ATCAACAAAGAATTCTCAGT+TGG | + | chr5_2:61947036-61947055 | Msa0780240:CDS | 30.0% | |
| TTGCTCTATATTACTGTATC+TGG | + | chr5_2:61947065-61947084 | Msa0780240:intron | 30.0% | |
| ! | GACTTATTTGTGCATTTTTG+TGG | + | chr5_2:61947163-61947182 | Msa0780240:intron | 30.0% |
| ATATATTTCCAAGTGATGTG+AGG | + | chr5_2:61947252-61947271 | Msa0780240:CDS | 30.0% | |
| TTCAGTAAATCCATATGCAA+TGG | - | chr5_2:61947366-61947385 | None:intergenic | 30.0% | |
| !! | GTTGTTTTCATAAGCAATCA+TGG | + | chr5_2:61947662-61947681 | Msa0780240:intron | 30.0% |
| ! | AAAAAAGAGCTAGTTTGGAT+TGG | - | chr5_2:61947793-61947812 | None:intergenic | 30.0% |
| CATGTAAAAAAGAGCTAGTT+TGG | - | chr5_2:61947798-61947817 | None:intergenic | 30.0% | |
| TTTACATGAAAATGAGCTTC+TGG | + | chr5_2:61947810-61947829 | Msa0780240:intron | 30.0% | |
| !! | TTTTTGGAAAAAGAACCTTC+GGG | + | chr5_2:61947981-61948000 | Msa0780240:intron | 30.0% |
| CGAACAAAACTGAATCTTAT+TGG | - | chr5_2:61948172-61948191 | None:intergenic | 30.0% | |
| !!! | ATGTTTTAAGGTTTTGGGTA+GGG | - | chr5_2:61948233-61948252 | None:intergenic | 30.0% |
| !!! | AATGTTTTAAGGTTTTGGGT+AGG | - | chr5_2:61948234-61948253 | None:intergenic | 30.0% |
| TACCCAAAACCTTAAAACAT+TGG | + | chr5_2:61948233-61948252 | Msa0780240:intron | 30.0% | |
| ACCCAAAACCTTAAAACATT+GGG | + | chr5_2:61948234-61948253 | Msa0780240:intron | 30.0% | |
| !!! | ACCCAATGTTTTAAGGTTTT+GGG | - | chr5_2:61948238-61948257 | None:intergenic | 30.0% |
| !!! | TACCCAATGTTTTAAGGTTT+TGG | - | chr5_2:61948239-61948258 | None:intergenic | 30.0% |
| ACCTTAAAACATTGGGTATA+CGG | + | chr5_2:61948241-61948260 | Msa0780240:intron | 30.0% | |
| TTTACATTGGATGAAGATGA+GGG | - | chr5_2:61948293-61948312 | None:intergenic | 30.0% | |
| ! | TTTTACATTGGATGAAGATG+AGG | - | chr5_2:61948294-61948313 | None:intergenic | 30.0% |
| ! | AGTAGTATTTTACAAACGCT+TGG | + | chr5_2:61948498-61948517 | Msa0780240:CDS | 30.0% |
| !! | AATTTAAAGCCATTTTGAGC+TGG | + | chr5_2:61948617-61948636 | Msa0780240:intron | 30.0% |
| !! | TGAAGTAAGATTTTGTTGTG+AGG | - | chr5_2:61948959-61948978 | None:intergenic | 30.0% |
| ACTGACATTTACAATTGAAG+GGG | - | chr5_2:61949148-61949167 | None:intergenic | 30.0% | |
| CACTGACATTTACAATTGAA+GGG | - | chr5_2:61949149-61949168 | None:intergenic | 30.0% | |
| !! | GTAATTTTGGCAGATGAAAA+AGG | + | chr5_2:61949400-61949419 | Msa0780240:intron | 30.0% |
| TCATTCTATGCTAAAGATTC+TGG | - | chr5_2:61949666-61949685 | None:intergenic | 30.0% | |
| GAAGTGAAAAATCCAATTCT+TGG | + | chr5_2:61949846-61949865 | Msa0780240:three_prime_UTR | 30.0% | |
| TTTACTTTACAGCCAAGAAT+TGG | - | chr5_2:61949861-61949880 | None:intergenic | 30.0% | |
| GTAACTATTTACACAAGCAA+GGG | - | chr5_2:61950035-61950054 | None:intergenic | 30.0% | |
| AGAAAAAGAGATTGAGACAG+TGG | + | chr5_2:61945204-61945223 | Msa0780240:five_prime_UTR | 35.0% | |
| ! | GGAGCAATTGATTCTTGATT+CGG | + | chr5_2:61945364-61945383 | Msa0780240:CDS | 35.0% |
| ! | AACAATGTTTCTGTCTCAGA+TGG | + | chr5_2:61945437-61945456 | Msa0780240:CDS | 35.0% |
| ! | TGTCTCAGATGGTGTTTTAT+TGG | + | chr5_2:61945448-61945467 | Msa0780240:CDS | 35.0% |
| !! | GTCTCAGATGGTGTTTTATT+GGG | + | chr5_2:61945449-61945468 | Msa0780240:CDS | 35.0% |
| !! | GGTGTTTTATTGGGTTTAGA+TGG | + | chr5_2:61945458-61945477 | Msa0780240:CDS | 35.0% |
| !! | GTTTTATTGGGTTTAGATGG+TGG | + | chr5_2:61945461-61945480 | Msa0780240:CDS | 35.0% |
| AGTCAACACTAAACCAAACA+AGG | - | chr5_2:61945791-61945810 | None:intergenic | 35.0% | |
| CCTCAATCCAAAAAAAAAGG+GGG | - | chr5_2:61945824-61945843 | None:intergenic | 35.0% | |
| AAACAATCAATCACAGATCG+CGG | - | chr5_2:61946041-61946060 | None:intergenic | 35.0% | |
| !!! | AATTTTGAGGATGCTGGTTT+TGG | + | chr5_2:61946072-61946091 | Msa0780240:intron | 35.0% |
| !!! | CTTGTTTTTACTGGAGAAAG+TGG | + | chr5_2:61946121-61946140 | Msa0780240:intron | 35.0% |
| ! | CTCCAATATGGACTAAACAA+TGG | - | chr5_2:61946207-61946226 | None:intergenic | 35.0% |
| CATTGTTTAGTCCATATTGG+AGG | + | chr5_2:61946205-61946224 | Msa0780240:intron | 35.0% | |
| ! | ATCGATTCTCTCTGTTAGAT+TGG | + | chr5_2:61946233-61946252 | Msa0780240:intron | 35.0% |
| !! | TTTTTGTTTCCTGGGTTTGT+TGG | + | chr5_2:61946296-61946315 | Msa0780240:intron | 35.0% |
| !! | TTTTGTTTCCTGGGTTTGTT+GGG | + | chr5_2:61946297-61946316 | Msa0780240:intron | 35.0% |
| !!! | TTGGGGTGTTTTTGTTTTCT+GGG | + | chr5_2:61946315-61946334 | Msa0780240:intron | 35.0% |
| !!! | TTTGTTTTCTGGGTTTGTTG+GGG | + | chr5_2:61946325-61946344 | Msa0780240:intron | 35.0% |
| !!! | AATTCCCCCTTTTTTTCTTG+TGG | + | chr5_2:61946395-61946414 | Msa0780240:intron | 35.0% |
| !!! | CCCTTTTTTTCTTGTGGATT+AGG | + | chr5_2:61946401-61946420 | Msa0780240:intron | 35.0% |
| CCCTAATCCACAAGAAAAAA+AGG | - | chr5_2:61946405-61946424 | None:intergenic | 35.0% | |
| TTGTAACTAATCGCAGATTG+TGG | - | chr5_2:61946654-61946673 | None:intergenic | 35.0% | |
| ! | CTGCGATTAGTTACAATACT+AGG | + | chr5_2:61946658-61946677 | Msa0780240:intron | 35.0% |
| ATGTTATGGTACCATCGTTT+AGG | + | chr5_2:61946814-61946833 | Msa0780240:intron | 35.0% | |
| TTTCTACAGAAATTGCTGCA+AGG | + | chr5_2:61946907-61946926 | Msa0780240:intron | 35.0% | |
| TTCTACAGAAATTGCTGCAA+GGG | + | chr5_2:61946908-61946927 | Msa0780240:intron | 35.0% | |
| GGAAACATTAGAGCAAGTTA+TGG | + | chr5_2:61946929-61946948 | Msa0780240:CDS | 35.0% | |
| TTCTTTGTTGATCTGTTGGA+TGG | - | chr5_2:61947028-61947047 | None:intergenic | 35.0% | |
| ! | AAAGAATTCTCAGTTGGCTT+AGG | + | chr5_2:61947042-61947061 | Msa0780240:CDS | 35.0% |
| !! | TGTTTCTCTGCTACTTTAAC+AGG | + | chr5_2:61947228-61947247 | Msa0780240:intron | 35.0% |
| !! | GTTTCTCTGCTACTTTAACA+GGG | + | chr5_2:61947229-61947248 | Msa0780240:intron | 35.0% |
| ACATATAACCTCACATCACT+TGG | - | chr5_2:61947263-61947282 | None:intergenic | 35.0% | |
| CATGGATGTGTATTAATTGC+TGG | + | chr5_2:61947332-61947351 | Msa0780240:CDS | 35.0% | |
| GCATATGGATTTACTGAAGA+TGG | + | chr5_2:61947368-61947387 | Msa0780240:CDS | 35.0% | |
| TGAAGATGGAAAAGAAGCAA+GGG | + | chr5_2:61947382-61947401 | Msa0780240:CDS | 35.0% | |
| AGTGCTAAGAAATAGAGAGA+GGG | - | chr5_2:61947486-61947505 | None:intergenic | 35.0% | |
| AAGTGCTAAGAAATAGAGAG+AGG | - | chr5_2:61947487-61947506 | None:intergenic | 35.0% | |
| !!! | GAAAGCATTTTCCTGCTAAT+TGG | - | chr5_2:61947867-61947886 | None:intergenic | 35.0% |
| !! | TTTTGGAAAAAGAACCTTCG+GGG | + | chr5_2:61947982-61948001 | Msa0780240:intron | 35.0% |
| GAGTAACCACTTAAGTGATT+TGG | + | chr5_2:61948059-61948078 | Msa0780240:intron | 35.0% | |
| CACATCTACACTCAAAACTA+GGG | + | chr5_2:61948086-61948105 | Msa0780240:intron | 35.0% | |
| ACATCTACACTCAAAACTAG+GGG | + | chr5_2:61948087-61948106 | Msa0780240:intron | 35.0% | |
| !!! | TTTTTTGCCGCAAAATCGAT+CGG | - | chr5_2:61948130-61948149 | None:intergenic | 35.0% |
| !! | TGTTCGGTTTGCAGTATTTT+TGG | + | chr5_2:61948186-61948205 | Msa0780240:intron | 35.0% |
| !!! | TGTTTTAAGGTTTTGGGTAG+GGG | - | chr5_2:61948232-61948251 | None:intergenic | 35.0% |
| CCTTAAAACATTGGGTATAC+GGG | + | chr5_2:61948242-61948261 | Msa0780240:intron | 35.0% | |
| TCTTCTGCAGAAGAATTGAT+TGG | + | chr5_2:61948525-61948544 | Msa0780240:CDS | 35.0% | |
| CTTCTGCAGAAGAATTGATT+GGG | + | chr5_2:61948526-61948545 | Msa0780240:CDS | 35.0% | |
| TCAAGTGTTAAAGCTGTTGT+AGG | + | chr5_2:61948805-61948824 | Msa0780240:CDS | 35.0% | |
| CAAGTGTTAAAGCTGTTGTA+GGG | + | chr5_2:61948806-61948825 | Msa0780240:CDS | 35.0% | |
| ! | GCACTGACATTTACAATTGA+AGG | - | chr5_2:61949150-61949169 | None:intergenic | 35.0% |
| TTCTTGAAGCAAACACAAAG+TGG | + | chr5_2:61949452-61949471 | Msa0780240:CDS | 35.0% | |
| TCTTGAAGCAAACACAAAGT+GGG | + | chr5_2:61949453-61949472 | Msa0780240:CDS | 35.0% | |
| TGCATTTCCAAATACTTTCC+TGG | + | chr5_2:61949499-61949518 | Msa0780240:CDS | 35.0% | |
| GCATTTCCAAATACTTTCCT+GGG | + | chr5_2:61949500-61949519 | Msa0780240:CDS | 35.0% | |
| CATTTCCAAATACTTTCCTG+GGG | + | chr5_2:61949501-61949520 | Msa0780240:CDS | 35.0% | |
| ATACTGACCTTAGGTCTAAT+GGG | - | chr5_2:61949532-61949551 | None:intergenic | 35.0% | |
| TATACTGACCTTAGGTCTAA+TGG | - | chr5_2:61949533-61949552 | None:intergenic | 35.0% | |
| TGACGATATATACTGACCTT+AGG | - | chr5_2:61949541-61949560 | None:intergenic | 35.0% | |
| ATTTACTAAGCCTCTAAGCA+AGG | - | chr5_2:61949635-61949654 | None:intergenic | 35.0% | |
| ACTTCATCATGAATTGTCAG+CGG | - | chr5_2:61949791-61949810 | None:intergenic | 35.0% | |
| TTAGCAAATGGTACATTGGT+AGG | + | chr5_2:61949926-61949945 | Msa0780240:three_prime_UTR | 35.0% | |
| ! | TTACACAAGCAAGGGTTTTA+AGG | - | chr5_2:61950027-61950046 | None:intergenic | 35.0% |
| GGTAACTATTTACACAAGCA+AGG | - | chr5_2:61950036-61950055 | None:intergenic | 35.0% | |
| CTTGTGTAAATAGTTACCAG+AGG | + | chr5_2:61950038-61950057 | Msa0780240:three_prime_UTR | 35.0% | |
| CAATAAAGACAACTCTCGTA+TGG | - | chr5_2:61950075-61950094 | None:intergenic | 35.0% | |
| TCAATGTTGACGGAGAAGAA+AGG | - | chr5_2:61945303-61945322 | None:intergenic | 40.0% | |
| ATATCTTATGATGCCGGAGA+AGG | + | chr5_2:61945343-61945362 | Msa0780240:exon | 40.0% | |
| AGAATCAATTGCTCCTTCTC+CGG | - | chr5_2:61945359-61945378 | None:intergenic | 40.0% | |
| !! | TTCTTGATTCGGAGATGAAG+AGG | + | chr5_2:61945375-61945394 | Msa0780240:CDS | 40.0% |
| ! | ATTCGGAGATGAAGAGGTAT+GGG | + | chr5_2:61945381-61945400 | Msa0780240:CDS | 40.0% |
| GTATGGGAATGGTGAAACAT+GGG | + | chr5_2:61945397-61945416 | Msa0780240:CDS | 40.0% | |
| !!! | CCCCCTTTTTTTTTGGATTG+AGG | + | chr5_2:61945821-61945840 | Msa0780240:intron | 40.0% |
| TGGGTGGGAAGAATTCAAAT+AGG | + | chr5_2:61945848-61945867 | Msa0780240:intron | 40.0% | |
| GGGTGGGAAGAATTCAAATA+GGG | + | chr5_2:61945849-61945868 | Msa0780240:intron | 40.0% | |
| GGTGGGAAGAATTCAAATAG+GGG | + | chr5_2:61945850-61945869 | Msa0780240:intron | 40.0% | |
| !!! | TGGTTTTGGCTTAGGCAATT+TGG | + | chr5_2:61946086-61946105 | Msa0780240:intron | 40.0% |
| !!! | TTTTGGCTTAGGCAATTTGG+TGG | + | chr5_2:61946089-61946108 | Msa0780240:intron | 40.0% |
| ! | TTTGGCTTAGGCAATTTGGT+GGG | + | chr5_2:61946090-61946109 | Msa0780240:intron | 40.0% |
| !! | TTTGTTTCCTGGGTTTGTTG+GGG | + | chr5_2:61946298-61946317 | Msa0780240:intron | 40.0% |
| !!! | GTTGGGGTGTTTTTGTTTTC+TGG | + | chr5_2:61946314-61946333 | Msa0780240:intron | 40.0% |
| !! | TTCTTGTGGATTAGGGATAG+TGG | + | chr5_2:61946409-61946428 | Msa0780240:intron | 40.0% |
| !! | TCTTGTGGATTAGGGATAGT+GGG | + | chr5_2:61946410-61946429 | Msa0780240:intron | 40.0% |
| CTAGGAGAATTTGAGGATGT+TGG | + | chr5_2:61946676-61946695 | Msa0780240:intron | 40.0% | |
| GAATTTGAGGATGTTGGTCA+TGG | + | chr5_2:61946682-61946701 | Msa0780240:intron | 40.0% | |
| GTGTGGTTCAAAACGATCTT+CGG | + | chr5_2:61946968-61946987 | Msa0780240:CDS | 40.0% | |
| ATACAGCCAAACATACAGCT+CGG | - | chr5_2:61946995-61947014 | None:intergenic | 40.0% | |
| ATCTGTTGGATGGTTAACAC+CGG | - | chr5_2:61947018-61947037 | None:intergenic | 40.0% | |
| GGAACAATTGGCAAACTTCA+TGG | + | chr5_2:61947314-61947333 | Msa0780240:CDS | 40.0% | |
| TGTGTATTAATTGCTGGCAC+AGG | + | chr5_2:61947338-61947357 | Msa0780240:CDS | 40.0% | |
| CTGAAGATGGAAAAGAAGCA+AGG | + | chr5_2:61947381-61947400 | Msa0780240:CDS | 40.0% | |
| ATAGAGAGAGGGAAAAGATG+AGG | - | chr5_2:61947475-61947494 | None:intergenic | 40.0% | |
| GTTTATCCAAACAAGGCCAA+AGG | - | chr5_2:61947532-61947551 | None:intergenic | 40.0% | |
| AGACTGAGAATCCAATTAGC+AGG | + | chr5_2:61947853-61947872 | Msa0780240:intron | 40.0% | |
| ACTTGAGAGATCTCGACATT+GGG | + | chr5_2:61948032-61948051 | Msa0780240:intron | 40.0% | |
| TGGTGTCCAAATCACTTAAG+TGG | - | chr5_2:61948068-61948087 | None:intergenic | 40.0% | |
| !!! | CCTAGTTTTGAGTGTAGATG+TGG | - | chr5_2:61948088-61948107 | None:intergenic | 40.0% |
| CCACATCTACACTCAAAACT+AGG | + | chr5_2:61948085-61948104 | Msa0780240:intron | 40.0% | |
| CATCTACACTCAAAACTAGG+GGG | + | chr5_2:61948088-61948107 | Msa0780240:intron | 40.0% | |
| !! | ATCAGTTCCGATCGATTTTG+CGG | + | chr5_2:61948120-61948139 | Msa0780240:intron | 40.0% |
| !!! | CAGTATTTTTGGACCGCATT+TGG | + | chr5_2:61948197-61948216 | Msa0780240:intron | 40.0% |
| ! | CCCGTATACCCAATGTTTTA+AGG | - | chr5_2:61948245-61948264 | None:intergenic | 40.0% |
| GTTGAGCAACATATAAGCGA+AGG | - | chr5_2:61948269-61948288 | None:intergenic | 40.0% | |
| CTACTCGTCAGCATTGTATT+TGG | - | chr5_2:61948483-61948502 | None:intergenic | 40.0% | |
| ! | TACCCGTCTCTTTGAAAATC+AGG | + | chr5_2:61948659-61948678 | Msa0780240:intron | 40.0% |
| ! | CACCTGATTTTCAAAGAGAC+GGG | - | chr5_2:61948664-61948683 | None:intergenic | 40.0% |
| ! | CCACCTGATTTTCAAAGAGA+CGG | - | chr5_2:61948665-61948684 | None:intergenic | 40.0% |
| TGACAAATTCCACGAAGCAT+CGG | - | chr5_2:61948895-61948914 | None:intergenic | 40.0% | |
| CATGTGTCAACTTATCAGTG+TGG | - | chr5_2:61949064-61949083 | None:intergenic | 40.0% | |
| AATACGTGCTGTATCTGTGT+AGG | + | chr5_2:61949112-61949131 | Msa0780240:intron | 40.0% | |
| CAAACACAAAGTGGGATGTA+GGG | + | chr5_2:61949461-61949480 | Msa0780240:CDS | 40.0% | |
| CCTGCAATAAAGACGTAGAA+AGG | - | chr5_2:61949580-61949599 | None:intergenic | 40.0% | |
| CCTTTCTACGTCTTTATTGC+AGG | + | chr5_2:61949577-61949596 | Msa0780240:intron | 40.0% | |
| GCTGACAATTCATGATGAAG+TGG | + | chr5_2:61949790-61949809 | Msa0780240:exon | 40.0% | |
| TATGGTTACACTTACACCTC+TGG | - | chr5_2:61950057-61950076 | None:intergenic | 40.0% | |
| TTGACGGAGAAGAAAGGACA+AGG | - | chr5_2:61945297-61945316 | None:intergenic | 45.0% | |
| GATTCGGAGATGAAGAGGTA+TGG | + | chr5_2:61945380-61945399 | Msa0780240:CDS | 45.0% | |
| ! | GAGATGAAGAGGTATGGGAA+TGG | + | chr5_2:61945386-61945405 | Msa0780240:CDS | 45.0% |
| GGTATGGGAATGGTGAAACA+TGG | + | chr5_2:61945396-61945415 | Msa0780240:CDS | 45.0% | |
| GCAACAGCCCTTGAAAGAAT+AGG | - | chr5_2:61945557-61945576 | None:intergenic | 45.0% | |
| ATTCTTTCAAGGGCTGTTGC+TGG | + | chr5_2:61945557-61945576 | Msa0780240:CDS | 45.0% | |
| !! | TTTGGATTGAGGATAGTGGG+TGG | + | chr5_2:61945832-61945851 | Msa0780240:intron | 45.0% |
| !! | TTGGATTGAGGATAGTGGGT+GGG | + | chr5_2:61945833-61945852 | Msa0780240:intron | 45.0% |
| CACTGAAGCGTAGCAGAATT+TGG | + | chr5_2:61946000-61946019 | Msa0780240:intron | 45.0% | |
| CAGCATCCTCAAAATTCTCC+TGG | - | chr5_2:61946068-61946087 | None:intergenic | 45.0% | |
| !! | CAGGAGAATTTTGAGGATGC+TGG | + | chr5_2:61946066-61946085 | Msa0780240:intron | 45.0% |
| AAAAACACCCCAACAAACCC+AGG | - | chr5_2:61946308-61946327 | None:intergenic | 45.0% | |
| TGGTCATGGCTTAGGCAATT+TGG | + | chr5_2:61946696-61946715 | Msa0780240:intron | 45.0% | |
| CATGGCTTAGGCAATTTGGT+AGG | + | chr5_2:61946700-61946719 | Msa0780240:intron | 45.0% | |
| GCTGTATGTTTGGCTGTATC+CGG | + | chr5_2:61946996-61947015 | Msa0780240:CDS | 45.0% | |
| GCTCTTGCAAGTGGAACAAT+TGG | + | chr5_2:61947302-61947321 | Msa0780240:CDS | 45.0% | |
| ! | AACAAGGCCAAAGGTGTAGA+GGG | - | chr5_2:61947523-61947542 | None:intergenic | 45.0% |
| ! | AAACAAGGCCAAAGGTGTAG+AGG | - | chr5_2:61947524-61947543 | None:intergenic | 45.0% |
| !! | TCTACACCTTTGGCCTTGTT+TGG | + | chr5_2:61947523-61947542 | Msa0780240:intron | 45.0% |
| AATGAGCTTCTGGTGAAGCA+AGG | + | chr5_2:61947820-61947839 | Msa0780240:intron | 45.0% | |
| AAAAAGAACCTTCGGGGTGT+TGG | + | chr5_2:61947988-61948007 | Msa0780240:intron | 45.0% | |
| ! | AAAAGAACCTTCGGGGTGTT+GGG | + | chr5_2:61947989-61948008 | Msa0780240:intron | 45.0% |
| CACTTGAGAGATCTCGACAT+TGG | + | chr5_2:61948031-61948050 | Msa0780240:intron | 45.0% | |
| CTTTCATTTGGCACCCTAAC+AGG | + | chr5_2:61948321-61948340 | Msa0780240:intron | 45.0% | |
| AAAGACCTTCCCTCCTGTTA+GGG | - | chr5_2:61948337-61948356 | None:intergenic | 45.0% | |
| TGGATATGGAATATCTGCGC+AGG | + | chr5_2:61948419-61948438 | Msa0780240:intron | 45.0% | |
| ! | GCGGTAATAGAAGCACATGA+TGG | + | chr5_2:61948450-61948469 | Msa0780240:CDS | 45.0% |
| ! | ATAGAAGCACATGATGGTCG+TGG | + | chr5_2:61948456-61948475 | Msa0780240:CDS | 45.0% |
| !! | AGCCATTTTGAGCTGGATAC+AGG | + | chr5_2:61948624-61948643 | Msa0780240:intron | 45.0% |
| !! | GCCATTTTGAGCTGGATACA+GGG | + | chr5_2:61948625-61948644 | Msa0780240:intron | 45.0% |
| ACCCTGTATCCAGCTCAAAA+TGG | - | chr5_2:61948629-61948648 | None:intergenic | 45.0% | |
| ! | CCGTCTCTTTGAAAATCAGG+TGG | + | chr5_2:61948662-61948681 | Msa0780240:intron | 45.0% |
| GACTTACGCAGATCCATCTT+GGG | + | chr5_2:61948684-61948703 | Msa0780240:CDS | 45.0% | |
| TCTGCACAGGATACTACAAC+TGG | - | chr5_2:61948730-61948749 | None:intergenic | 45.0% | |
| AGTTGTAGTATCCTGTGCAG+AGG | + | chr5_2:61948729-61948748 | Msa0780240:CDS | 45.0% | |
| GCTAAAATCGGCGCAAGAAT+TGG | + | chr5_2:61948780-61948799 | Msa0780240:CDS | 45.0% | |
| AAAGCTGTTGTAGGGAGACT+TGG | + | chr5_2:61948814-61948833 | Msa0780240:CDS | 45.0% | |
| AGACTTGGATTGTGCGGTAA+AGG | + | chr5_2:61948829-61948848 | Msa0780240:CDS | 45.0% | |
| CTGTATCTGTGTAGGACACT+GGG | + | chr5_2:61949120-61949139 | Msa0780240:intron | 45.0% | |
| GCAAACACAAAGTGGGATGT+AGG | + | chr5_2:61949460-61949479 | Msa0780240:CDS | 45.0% | |
| !! | AAGCACCCCAGGAAAGTATT+TGG | - | chr5_2:61949509-61949528 | None:intergenic | 45.0% |
| GATGCACTAACCTTGCTTAG+AGG | + | chr5_2:61949622-61949641 | Msa0780240:intron | 45.0% | |
| AAACTGTGCCTCACTTAGCA+AGG | - | chr5_2:61949969-61949988 | None:intergenic | 45.0% | |
| !!! | TTTTTATTATTTTTATTTTC+TGG | + | chr5_2:61945652-61945671 | Msa0780240:intron | 5.0% |
| !!! | TTTTATTATTTTTATTTTCT+GGG | + | chr5_2:61945653-61945672 | Msa0780240:intron | 5.0% |
| TCACAGATCGCGGAAAACAG+TGG | - | chr5_2:61946031-61946050 | None:intergenic | 50.0% | |
| !!! | GAGGATGCTGGTTTTGGCTT+AGG | + | chr5_2:61946078-61946097 | Msa0780240:intron | 50.0% |
| !! | TGGATTAGGGATAGTGGGCA+GGG | + | chr5_2:61946415-61946434 | Msa0780240:intron | 50.0% |
| AGTGGCTGTAGCAGCTATAG+TGG | + | chr5_2:61946458-61946477 | Msa0780240:intron | 50.0% | |
| GAGGATGTTGGTCATGGCTT+AGG | + | chr5_2:61946688-61946707 | Msa0780240:intron | 50.0% | |
| GCAGATGCGCTTTCAAAGTG+TGG | + | chr5_2:61946951-61946970 | Msa0780240:CDS | 50.0% | |
| TTCGGTCCGAGCTGTATGTT+TGG | + | chr5_2:61946986-61947005 | Msa0780240:CDS | 50.0% | |
| TCCACTTGCAAGAGCAGCAA+CGG | - | chr5_2:61947297-61947316 | None:intergenic | 50.0% | |
| GGCACAGGAACCATTGCATA+TGG | + | chr5_2:61947353-61947372 | Msa0780240:CDS | 50.0% | |
| AGGACCTGTCTTAGGTGACT+GGG | + | chr5_2:61947415-61947434 | Msa0780240:intron | 50.0% | |
| ! | GGTGTAGAGGGGCGTAAAAT+AGG | - | chr5_2:61947511-61947530 | None:intergenic | 50.0% |
| TTTACGCCCCTCTACACCTT+TGG | + | chr5_2:61947513-61947532 | Msa0780240:intron | 50.0% | |
| ! | ACAAGGCCAAAGGTGTAGAG+GGG | - | chr5_2:61947522-61947541 | None:intergenic | 50.0% |
| ! | GGGGTGTTCACATCCAAATG+CGG | - | chr5_2:61948213-61948232 | None:intergenic | 50.0% |
| TCATTTGGCACCCTAACAGG+AGG | + | chr5_2:61948324-61948343 | Msa0780240:intron | 50.0% | |
| CATTTGGCACCCTAACAGGA+GGG | + | chr5_2:61948325-61948344 | Msa0780240:intron | 50.0% | |
| GAAAGACCTTCCCTCCTGTT+AGG | - | chr5_2:61948338-61948357 | None:intergenic | 50.0% | |
| GGACTTACGCAGATCCATCT+TGG | + | chr5_2:61948683-61948702 | Msa0780240:CDS | 50.0% | |
| GTAGGGAGACTTGGATTGTG+CGG | + | chr5_2:61948823-61948842 | Msa0780240:CDS | 50.0% | |
| CACACATTACCGATGCTTCG+TGG | + | chr5_2:61948883-61948902 | Msa0780240:intron | 50.0% | |
| GCTGTATCTGTGTAGGACAC+TGG | + | chr5_2:61949119-61949138 | Msa0780240:intron | 50.0% | |
| ! | GCTTTTCCGCTTGTCATGGT+TGG | + | chr5_2:61949424-61949443 | Msa0780240:CDS | 50.0% |
| TTTCCGCTTGTCATGGTTGG+TGG | + | chr5_2:61949427-61949446 | Msa0780240:CDS | 50.0% | |
| GGTGCTTCCCATTAGACCTA+AGG | + | chr5_2:61949522-61949541 | Msa0780240:CDS | 50.0% | |
| AAACAGGTAGAGCCTGCTGT+TGG | + | chr5_2:61949708-61949727 | Msa0780240:intron | 50.0% | |
| ! | TTGGAGCAGCATGGTTAGCT+TGG | + | chr5_2:61949727-61949746 | Msa0780240:CDS | 50.0% |
| TGCCTCACTTAGCAAGGACA+GGG | - | chr5_2:61949963-61949982 | None:intergenic | 50.0% | |
| !! | GTGGATTAGGGATAGTGGGC+AGG | + | chr5_2:61946414-61946433 | Msa0780240:intron | 55.0% |
| !! | ATTAGGGATAGTGGGCAGGG+AGG | + | chr5_2:61946418-61946437 | Msa0780240:intron | 55.0% |
| GGAAAAGAAGCAAGGGCTGC+AGG | + | chr5_2:61947389-61947408 | Msa0780240:CDS | 55.0% | |
| CAGGACCTGTCTTAGGTGAC+TGG | + | chr5_2:61947414-61947433 | Msa0780240:intron | 55.0% | |
| GGACCTGTCTTAGGTGACTG+GGG | + | chr5_2:61947416-61947435 | Msa0780240:intron | 55.0% | |
| GAGCTTCTGGTGAAGCAAGG+TGG | + | chr5_2:61947823-61947842 | Msa0780240:intron | 55.0% | |
| CTGGTGAAGCAAGGTGGTGT+TGG | + | chr5_2:61947829-61947848 | Msa0780240:intron | 55.0% | |
| !! | TTCGGGGTGTTGGGTCACAA+GGG | + | chr5_2:61947998-61948017 | Msa0780240:intron | 55.0% |
| ATCTGCGCAGGCACTAACTG+CGG | + | chr5_2:61948431-61948450 | Msa0780240:intron | 55.0% | |
| ! | TGGAACGAGTGCTGCAATGC+GGG | - | chr5_2:61948710-61948729 | None:intergenic | 55.0% |
| ! | CTGGAACGAGTGCTGCAATG+CGG | - | chr5_2:61948711-61948730 | None:intergenic | 55.0% |
| GTAGTATCCTGTGCAGAGGC+TGG | + | chr5_2:61948733-61948752 | Msa0780240:CDS | 55.0% | |
| ! | AGGCGCTTTTCCGCTTGTCA+TGG | + | chr5_2:61949420-61949439 | Msa0780240:CDS | 55.0% |
| ACGCCACCAACCATGACAAG+CGG | - | chr5_2:61949433-61949452 | None:intergenic | 55.0% | |
| AACCATGCTGCTCCAACAGC+AGG | - | chr5_2:61949723-61949742 | None:intergenic | 55.0% | |
| CTCACTTAGCAAGGACAGGG+AGG | - | chr5_2:61949960-61949979 | None:intergenic | 55.0% | |
| CTCCCTGTCCTTGCTAAGTG+AGG | + | chr5_2:61949958-61949977 | Msa0780240:three_prime_UTR | 55.0% | |
| GTGCCTCACTTAGCAAGGAC+AGG | - | chr5_2:61949964-61949983 | None:intergenic | 55.0% | |
| GCCGTTGCTGCTCTTGCAAG+TGG | + | chr5_2:61947293-61947312 | Msa0780240:CDS | 60.0% | |
| CTGCCCCAGTCACCTAAGAC+AGG | - | chr5_2:61947422-61947441 | None:intergenic | 60.0% | |
| CTGTCTTAGGTGACTGGGGC+AGG | + | chr5_2:61947420-61947439 | Msa0780240:intron | 60.0% | |
| CTTGTGACCCAACACCCCGA+AGG | - | chr5_2:61947999-61948018 | None:intergenic | 60.0% | |
| !! | CTTCGGGGTGTTGGGTCACA+AGG | + | chr5_2:61947997-61948016 | Msa0780240:intron | 60.0% |
| !! | TCGGGGTGTTGGGTCACAAG+GGG | + | chr5_2:61947999-61948018 | Msa0780240:intron | 60.0% |
| TGGCACCCTAACAGGAGGGA+AGG | + | chr5_2:61948329-61948348 | Msa0780240:intron | 60.0% | |
| !! | GGTCTAATGGGAAGCACCCC+AGG | - | chr5_2:61949520-61949539 | None:intergenic | 60.0% |
| AGCCTGCTGTTGGAGCAGCA+TGG | + | chr5_2:61949718-61949737 | Msa0780240:CDS | 60.0% | |
| GCAGGCGCAGGACCTGTCTT+AGG | + | chr5_2:61947407-61947426 | Msa0780240:intron | 65.0% | |
| GCTGCAATGCGGGCCCAAGA+TGG | - | chr5_2:61948700-61948719 | None:intergenic | 65.0% | |
| CTCATCGCCAGCCTCTGCAC+AGG | - | chr5_2:61948743-61948762 | None:intergenic | 65.0% | |
| CTGTGCAGAGGCTGGCGATG+AGG | + | chr5_2:61948741-61948760 | Msa0780240:CDS | 65.0% | |
| GAAGCAAGGGCTGCAGGCGC+AGG | + | chr5_2:61947395-61947414 | Msa0780240:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 61945176 | 61950169 | 61945176 | ID=Msa0780240;Name=Msa0780240 |
| chr5_2 | mRNA | 61945176 | 61950169 | 61945176 | ID=Msa0780240-mRNA-1;Parent=Msa0780240;Name=Msa0780240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=174|0.83|0.71|1|1|1|7|375|354 |
| chr5_2 | exon | 61945176 | 61945605 | 61945176 | ID=Msa0780240-mRNA-1:exon:18250;Parent=Msa0780240-mRNA-1 |
| chr5_2 | exon | 61946916 | 61947063 | 61946916 | ID=Msa0780240-mRNA-1:exon:18251;Parent=Msa0780240-mRNA-1 |
| chr5_2 | exon | 61947250 | 61947421 | 61947250 | ID=Msa0780240-mRNA-1:exon:18252;Parent=Msa0780240-mRNA-1 |
| chr5_2 | exon | 61948441 | 61948547 | 61948441 | ID=Msa0780240-mRNA-1:exon:18253;Parent=Msa0780240-mRNA-1 |
| chr5_2 | exon | 61948681 | 61948850 | 61948681 | ID=Msa0780240-mRNA-1:exon:18254;Parent=Msa0780240-mRNA-1 |
| chr5_2 | exon | 61949413 | 61949543 | 61949413 | ID=Msa0780240-mRNA-1:exon:18255;Parent=Msa0780240-mRNA-1 |
| chr5_2 | exon | 61949714 | 61950169 | 61949714 | ID=Msa0780240-mRNA-1:exon:18256;Parent=Msa0780240-mRNA-1 |
| chr5_2 | five_prime_UTR | 61945176 | 61945349 | 61945176 | ID=Msa0780240-mRNA-1:five_prime_utr;Parent=Msa0780240-mRNA-1 |
| chr5_2 | CDS | 61945350 | 61945605 | 61945350 | ID=Msa0780240-mRNA-1:cds;Parent=Msa0780240-mRNA-1 |
| chr5_2 | CDS | 61946916 | 61947063 | 61946916 | ID=Msa0780240-mRNA-1:cds;Parent=Msa0780240-mRNA-1 |
| chr5_2 | CDS | 61947250 | 61947421 | 61947250 | ID=Msa0780240-mRNA-1:cds;Parent=Msa0780240-mRNA-1 |
| chr5_2 | CDS | 61948441 | 61948547 | 61948441 | ID=Msa0780240-mRNA-1:cds;Parent=Msa0780240-mRNA-1 |
| chr5_2 | CDS | 61948681 | 61948850 | 61948681 | ID=Msa0780240-mRNA-1:cds;Parent=Msa0780240-mRNA-1 |
| chr5_2 | CDS | 61949413 | 61949543 | 61949413 | ID=Msa0780240-mRNA-1:cds;Parent=Msa0780240-mRNA-1 |
| chr5_2 | CDS | 61949714 | 61949794 | 61949714 | ID=Msa0780240-mRNA-1:cds;Parent=Msa0780240-mRNA-1 |
| chr5_2 | three_prime_UTR | 61949795 | 61950169 | 61949795 | ID=Msa0780240-mRNA-1:three_prime_utr;Parent=Msa0780240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
