Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741270 | XP_013454338.1 | 99.595 | 494 | 2 | 0 | 1 | 494 | 1 | 494 | 0.0 | 1018 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741270 | sp|O48791|SCAB1_ARATH | 78.499 | 493 | 106 | 0 | 1 | 493 | 1 | 493 | 0.0 | 815 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741270 | A0A072UF62 | 99.595 | 494 | 2 | 0 | 1 | 494 | 1 | 494 | 0.0 | 1018 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0741270 | Msa0780980 | 0.977859 | 1.249332e-144 | -8.615850e-47 |
| Msa0741270 | Msa0820990 | 0.912409 | 2.014490e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741270 | MtrunA17_Chr5g0441311 | 99.595 | 494 | 2 | 0 | 1 | 494 | 12 | 505 | 0.0 | 1016 |
| Msa0741270 | MtrunA17_Chr3g0093711 | 84.254 | 489 | 73 | 2 | 1 | 489 | 1 | 485 | 0.0 | 843 |
| Msa0741270 | MtrunA17_Chr7g0255781 | 59.100 | 489 | 198 | 2 | 1 | 488 | 1 | 488 | 0.0 | 600 |
| Msa0741270 | MtrunA17_Chr6g0482421 | 59.322 | 118 | 33 | 3 | 95 | 211 | 11 | 114 | 4.24e-32 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0741270 | AT2G26770.2 | 78.499 | 493 | 106 | 0 | 1 | 493 | 1 | 493 | 0.0 | 815 |
| Msa0741270 | AT2G26770.3 | 78.499 | 493 | 106 | 0 | 1 | 493 | 1 | 493 | 0.0 | 815 |
| Msa0741270 | AT2G26770.1 | 78.499 | 493 | 106 | 0 | 1 | 493 | 1 | 493 | 0.0 | 815 |
| Msa0741270 | AT3G56480.1 | 57.602 | 467 | 193 | 4 | 26 | 488 | 25 | 490 | 0.0 | 541 |
| Msa0741270 | AT2G40820.4 | 55.158 | 475 | 209 | 3 | 17 | 488 | 44 | 517 | 0.0 | 535 |
| Msa0741270 | AT2G40820.2 | 55.158 | 475 | 209 | 3 | 17 | 488 | 19 | 492 | 0.0 | 535 |
| Msa0741270 | AT2G40820.1 | 55.158 | 475 | 209 | 3 | 17 | 488 | 19 | 492 | 0.0 | 535 |
| Msa0741270 | AT2G40820.3 | 55.158 | 475 | 209 | 3 | 17 | 488 | 31 | 504 | 0.0 | 534 |
| Msa0741270 | AT2G40820.5 | 55.352 | 383 | 168 | 2 | 108 | 488 | 1 | 382 | 5.79e-152 | 439 |
Find 126 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGAGGGTAACTCGTGATTT+TGG | 0.179789 | 5_1:+60817019 | Msa0741270:CDS |
| TGAGTTGACTAGAGATTTAT+AGG | 0.202805 | 5_1:+60821301 | Msa0741270:three_prime_UTR |
| TTAGCTCCAATTCTATAATT+AGG | 0.219735 | 5_1:-60817109 | None:intergenic |
| AGATTCACTTGAATCTTTAA+AGG | 0.229773 | 5_1:+60817508 | Msa0741270:CDS |
| CTGCGGCACAGGCACTATTT+TGG | 0.245447 | 5_1:+60820533 | Msa0741270:CDS |
| CGGTTTCCTAATTATAGAAT+TGG | 0.276328 | 5_1:+60817103 | Msa0741270:CDS |
| TGAACTTGAATAATATTCTT+TGG | 0.279096 | 5_1:-60820309 | None:intergenic |
| GCAAGGTTGAATTTGCAAAT+AGG | 0.304721 | 5_1:-60819259 | None:intergenic |
| CCTTCATAGATAACACTTTA+GGG | 0.322062 | 5_1:-60817159 | None:intergenic |
| ATTGAACAATTTGAAAGATC+TGG | 0.331159 | 5_1:-60819294 | None:intergenic |
| ACTCTCATTGCACTTATCTA+TGG | 0.337805 | 5_1:+60821395 | Msa0741270:three_prime_UTR |
| GAAACGATACCTGGATCTAT+TGG | 0.343800 | 5_1:-60819603 | None:intergenic |
| AGATCATGTGAAGATGAAAA+TGG | 0.346925 | 5_1:-60816175 | None:intergenic |
| TCCTTCATAGATAACACTTT+AGG | 0.347362 | 5_1:-60817160 | None:intergenic |
| ACAAAAGAAAGTCCTTGTTT+TGG | 0.350532 | 5_1:-60820559 | None:intergenic |
| GAGAGAATGTCTCAAGCTTC+CGG | 0.356262 | 5_1:+60818206 | Msa0741270:CDS |
| GATTCACTTGAATCTTTAAA+GGG | 0.364770 | 5_1:+60817509 | Msa0741270:CDS |
| TTTCAAATTGTTCAATTCAA+TGG | 0.375625 | 5_1:+60819301 | Msa0741270:CDS |
| TGATTTGTAGGTCATGGATA+TGG | 0.378136 | 5_1:+60818724 | Msa0741270:intron |
| TAATGGCAGATCATGCTTGC+TGG | 0.391824 | 5_1:+60821035 | Msa0741270:intron |
| CCAGATGACAGAGCTCCATT+AGG | 0.399289 | 5_1:+60821059 | Msa0741270:CDS |
| CAACTTGGTTATTCAACAAC+GGG | 0.401933 | 5_1:-60816107 | None:intergenic |
| CCTAATGGAGCTCTGTCATC+TGG | 0.403344 | 5_1:-60821059 | None:intergenic |
| CGGTGGAAATGCTGCGGCAC+AGG | 0.409902 | 5_1:+60820522 | Msa0741270:CDS |
| CGTCCGACATCAAATGGTTC+AGG | 0.413959 | 5_1:-60819522 | None:intergenic |
| GAGACTCATCATGTCCCTAA+TGG | 0.414575 | 5_1:-60821074 | None:intergenic |
| AGAGAATGTCTCAAGCTTCC+GGG | 0.422863 | 5_1:+60818207 | Msa0741270:CDS |
| GAGAGTGGAAGAGTCGCTTC+AGG | 0.424559 | 5_1:+60818178 | Msa0741270:CDS |
| TGGAGCTAACGATCAGATAA+TGG | 0.425893 | 5_1:+60817123 | Msa0741270:CDS |
| TTGTGATTTGTAGAGGGAGG+TGG | 0.425962 | 5_1:+60816984 | Msa0741270:intron |
| TATTATAGAGTGGTTGCAAA+TGG | 0.426594 | 5_1:+60821329 | Msa0741270:three_prime_UTR |
| CTTTGTGGAGTTCGAGGCGG+TGG | 0.433322 | 5_1:+60820505 | Msa0741270:CDS |
| GTCTCAAGCTTCCGGGAAGC+AGG | 0.435496 | 5_1:+60818214 | Msa0741270:CDS |
| CCACATTTATATGAACTTGA+AGG | 0.435639 | 5_1:+60819219 | Msa0741270:CDS |
| TCTTTAAAGGGGCGTGTGGC+GGG | 0.444564 | 5_1:+60817521 | Msa0741270:CDS |
| CGATGCTGCTTCTCTAAGTC+TGG | 0.446998 | 5_1:-60817453 | None:intergenic |
| TATTTCGTATATACCTTGCT+TGG | 0.451392 | 5_1:-60818473 | None:intergenic |
| CTTTAGCTTTGTGGAGTTCG+AGG | 0.452307 | 5_1:+60820499 | Msa0741270:intron |
| TAGTAAATTTGAGAAGGGTT+TGG | 0.464254 | 5_1:+60817249 | Msa0741270:CDS |
| CAGATAACAAGGACAAAGAA+AGG | 0.464921 | 5_1:+60819183 | Msa0741270:intron |
| CACATCATACTTTCAACTAC+TGG | 0.472340 | 5_1:+60819579 | Msa0741270:CDS |
| CAGATGACAGAGCTCCATTA+GGG | 0.473664 | 5_1:+60821060 | Msa0741270:CDS |
| TCTCACAAGTGCCTCTACAT+AGG | 0.482662 | 5_1:-60819771 | None:intergenic |
| CGATCAGATAATGGAGGCAA+AGG | 0.489213 | 5_1:+60817132 | Msa0741270:CDS |
| AGCAGTTCAGTTAACTCAAA+GGG | 0.490217 | 5_1:+60817867 | Msa0741270:CDS |
| AATATTCGTCCGACATCAAA+TGG | 0.496654 | 5_1:-60819528 | None:intergenic |
| GATCATGTGAAGATGAAAAT+GGG | 0.498127 | 5_1:-60816174 | None:intergenic |
| ATGTGGTATTTGCTACTAGT+CGG | 0.499202 | 5_1:+60817083 | Msa0741270:CDS |
| CCCTAAAGTGTTATCTATGA+AGG | 0.501476 | 5_1:+60817159 | Msa0741270:CDS |
| TCTATTCATGTACTTCATGT+TGG | 0.504883 | 5_1:+60820245 | Msa0741270:CDS |
| ATCTTTAAAGGGGCGTGTGG+CGG | 0.508676 | 5_1:+60817520 | Msa0741270:CDS |
| ACATGAACTTCAAGCATTGA+GGG | 0.508731 | 5_1:+60818748 | Msa0741270:CDS |
| CACATTTATATGAACTTGAA+GGG | 0.509106 | 5_1:+60819220 | Msa0741270:CDS |
| ATTATAGAGTGGTTGCAAAT+GGG | 0.516172 | 5_1:+60821330 | Msa0741270:three_prime_UTR |
| GGACGTGGAACAATTAATGA+AGG | 0.517482 | 5_1:+60818412 | Msa0741270:intron |
| ATTTGAGAAGGGTTTGGCTG+CGG | 0.519907 | 5_1:+60817255 | Msa0741270:CDS |
| AACTCATAATTAATTACAAG+TGG | 0.520841 | 5_1:-60821117 | None:intergenic |
| CTGAAGTCGAAGATAATGTC+TGG | 0.522449 | 5_1:-60818789 | None:intergenic |
| AATTTGCAAATAGGAGCCTA+AGG | 0.525073 | 5_1:-60819250 | None:intergenic |
| CTTGCTAGTAAATTTGAGAA+GGG | 0.525629 | 5_1:+60817244 | Msa0741270:CDS |
| GCGTGAGACTGCTATGTTGT+TGG | 0.528898 | 5_1:+60817192 | Msa0741270:CDS |
| CTTGAAGGGAATGAAACCTT+AGG | 0.529166 | 5_1:+60819234 | Msa0741270:CDS |
| GAAGATGAAAATGGGTGGTT+AGG | 0.529717 | 5_1:-60816166 | None:intergenic |
| ATATTATTCAAGTTCAATGC+AGG | 0.530369 | 5_1:+60820316 | Msa0741270:CDS |
| CCTTGCTAGTAAATTTGAGA+AGG | 0.532672 | 5_1:+60817243 | Msa0741270:CDS |
| GCAAAAGGGTGGCTGCAACT+TGG | 0.532840 | 5_1:-60816122 | None:intergenic |
| ACTACTGGTCCAATAGATCC+AGG | 0.546915 | 5_1:+60819594 | Msa0741270:CDS |
| ACTTAGAGAAGCAGCATCGT+TGG | 0.548424 | 5_1:+60817457 | Msa0741270:CDS |
| AACATGAACTTCAAGCATTG+AGG | 0.549149 | 5_1:+60818747 | Msa0741270:CDS |
| TGCTAAGAAACTTGTTGATG+AGG | 0.551185 | 5_1:+60818106 | Msa0741270:CDS |
| GCGTGTGGCGGGAAGAAACA+AGG | 0.553645 | 5_1:+60817532 | Msa0741270:CDS |
| TTCAGTTAACTCAAAGGGAA+GGG | 0.553933 | 5_1:+60817872 | Msa0741270:CDS |
| ATAGGTTACATATTATAGAG+TGG | 0.554651 | 5_1:+60821319 | Msa0741270:three_prime_UTR |
| CCTTCTCAAATTTACTAGCA+AGG | 0.554709 | 5_1:-60817243 | None:intergenic |
| ATTGTAGCAGTAGATGCAAA+AGG | 0.557812 | 5_1:-60816137 | None:intergenic |
| TAGTTGAAAGTATGATGTGC+TGG | 0.559524 | 5_1:-60819575 | None:intergenic |
| ACATTATCTTCGACTTCAGA+AGG | 0.561300 | 5_1:+60818793 | Msa0741270:CDS |
| TAGCAGTTCAGTTAACTCAA+AGG | 0.564626 | 5_1:+60817866 | Msa0741270:CDS |
| ATGCAGCCATCATGCTTGCA+AGG | 0.568067 | 5_1:+60820611 | Msa0741270:CDS |
| CCTTCAAGTTCATATAAATG+TGG | 0.571227 | 5_1:-60819219 | None:intergenic |
| GTGCAGAAATAGATAATGCT+AGG | 0.572393 | 5_1:+60818144 | Msa0741270:CDS |
| AGGGGAACTATTACAAGAGA+AGG | 0.575891 | 5_1:+60817891 | Msa0741270:CDS |
| AGTACATGAATAGATTCAGT+TGG | 0.577590 | 5_1:-60820236 | None:intergenic |
| GCCTGCAGTGTCTTCTGATG+TGG | 0.583820 | 5_1:+60817066 | Msa0741270:CDS |
| TCAACAACGGGAATCACCAC+TGG | 0.585540 | 5_1:-60816095 | None:intergenic |
| ATTAATGAAGGAGGTTCAAG+AGG | 0.588663 | 5_1:+60818424 | Msa0741270:CDS |
| GTTCAGTTAACTCAAAGGGA+AGG | 0.590453 | 5_1:+60817871 | Msa0741270:CDS |
| GCAACTTGGTTATTCAACAA+CGG | 0.592800 | 5_1:-60816108 | None:intergenic |
| TTGCACTTATCTATGGACAT+TGG | 0.593810 | 5_1:+60821402 | Msa0741270:three_prime_UTR |
| TCAGTTAACTCAAAGGGAAG+GGG | 0.595135 | 5_1:+60817873 | Msa0741270:CDS |
| ATGAGGATCAAACTCTGCAA+AGG | 0.596515 | 5_1:+60820272 | Msa0741270:CDS |
| AAATCTCCTTGCAAGCATGA+TGG | 0.600891 | 5_1:-60820617 | None:intergenic |
| CAATATAACATAACAAGCCA+CGG | 0.602549 | 5_1:-60821184 | None:intergenic |
| GGCTGCTAAGTTGTCTGAAG+AGG | 0.609672 | 5_1:+60817276 | Msa0741270:CDS |
| TTGTAGCAGTAGATGCAAAA+GGG | 0.611006 | 5_1:-60816136 | None:intergenic |
| ATTCACTTGAATCTTTAAAG+GGG | 0.617778 | 5_1:+60817510 | Msa0741270:CDS |
| AACAAGGACAAAGAAAGGAG+AGG | 0.619273 | 5_1:+60819188 | Msa0741270:CDS |
| ACTCATAATTAATTACAAGT+GGG | 0.620306 | 5_1:-60821116 | None:intergenic |
| GGTGGTTGTAAGAGATGACG+AGG | 0.623089 | 5_1:+60817002 | Msa0741270:exon |
| TGGTGTCGTGTATCATCTGA+TGG | 0.625922 | 5_1:+60819321 | Msa0741270:CDS |
| TAGGTCAGCTGTTCAGAGAG+TGG | 0.628287 | 5_1:+60818163 | Msa0741270:CDS |
| TGAATCTTTAAAGGGGCGTG+TGG | 0.628341 | 5_1:+60817517 | Msa0741270:CDS |
| GCACCTGAACCATTTGATGT+CGG | 0.631127 | 5_1:+60819519 | Msa0741270:CDS |
| TAAAACTTATGTATAATACA+AGG | 0.632880 | 5_1:-60821153 | None:intergenic |
| AAGAAACAAGGATGATGTCG+AGG | 0.633966 | 5_1:+60817544 | Msa0741270:CDS |
| ACCACATCAGAAGACACTGC+AGG | 0.635392 | 5_1:-60817067 | None:intergenic |
| TAAAGTGTTATCTATGAAGG+AGG | 0.636468 | 5_1:+60817162 | Msa0741270:CDS |
| AATGCTGCATCAGCCAAGCA+AGG | 0.639243 | 5_1:+60818460 | Msa0741270:CDS |
| TCTAGTCAACTCACTCACAA+AGG | 0.648601 | 5_1:-60821291 | None:intergenic |
| TCTGGAGCATTATCAGAGCA+AGG | 0.648849 | 5_1:-60819276 | None:intergenic |
| TCGAGGCGGTGGAAATGCTG+CGG | 0.651682 | 5_1:+60820516 | Msa0741270:CDS |
| TGTCGAGGATGCTATTGCTA+TGG | 0.654260 | 5_1:+60817559 | Msa0741270:CDS |
| GAACTGAGAGACGATTATGC+TGG | 0.654568 | 5_1:-60817216 | None:intergenic |
| GTAGTTGTAACACAAATGAG+TGG | 0.656424 | 5_1:+60820203 | Msa0741270:CDS |
| GTGCAATGAGAGTGAGACTG+AGG | 0.657616 | 5_1:-60821385 | None:intergenic |
| TTATCTTCGACTTCAGAAGG+AGG | 0.660621 | 5_1:+60818796 | Msa0741270:CDS |
| ACTATTACAAGAGAAGGCAG+AGG | 0.660927 | 5_1:+60817897 | Msa0741270:CDS |
| CGTGGAACAATTAATGAAGG+AGG | 0.670679 | 5_1:+60818415 | Msa0741270:CDS |
| TGGTAATGATTCATATCTTG+TGG | 0.672912 | 5_1:+60821213 | Msa0741270:intron |
| TGGTTTGGGAACCTATGTAG+AGG | 0.673790 | 5_1:+60819760 | Msa0741270:CDS |
| AAAAGCATCAACAAGACCAG+TGG | 0.687259 | 5_1:+60816079 | Msa0741270:five_prime_UTR |
| TAGCTTTGTGGAGTTCGAGG+CGG | 0.690196 | 5_1:+60820502 | Msa0741270:intron |
| TAGCAGTAGATGCAAAAGGG+TGG | 0.701239 | 5_1:-60816133 | None:intergenic |
| AGCTAACGATCAGATAATGG+AGG | 0.702876 | 5_1:+60817126 | Msa0741270:CDS |
| GTGGTTGTAAGAGATGACGA+GGG | 0.726958 | 5_1:+60817003 | Msa0741270:exon |
| CATGTGAAGATGAAAATGGG+TGG | 0.736302 | 5_1:-60816171 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGAGTAAAAAAAAT+AGG | + | chr5_1:60816272-60816291 | Msa0741270:intron | 10.0% |
| !! | TACTTCAAATTATATAAAAA+AGG | + | chr5_1:60816449-60816468 | Msa0741270:intron | 10.0% |
| !! | ACTTCAAATTATATAAAAAA+GGG | + | chr5_1:60816450-60816469 | Msa0741270:intron | 10.0% |
| !! | AACATAAATATATGTTTATT+AGG | - | chr5_1:60817637-60817656 | None:intergenic | 10.0% |
| !!! | TACATTTTTTTTTTTTTTGA+GGG | - | chr5_1:60818896-60818915 | None:intergenic | 10.0% |
| !!! | TCAAAACTTTTTTAAAAAAT+TGG | - | chr5_1:60819963-60819982 | None:intergenic | 10.0% |
| !! | CTTCAAATTATATAAAAAAG+GGG | + | chr5_1:60816451-60816470 | Msa0741270:intron | 15.0% |
| !!! | AAAATTGATTTGATATGAAT+TGG | + | chr5_1:60816678-60816697 | Msa0741270:intron | 15.0% |
| !!! | AAAATTGATTTTGATATGTT+TGG | - | chr5_1:60816852-60816871 | None:intergenic | 15.0% |
| !!! | TTTGTTTGGATTTTTTTTTT+TGG | + | chr5_1:60818373-60818392 | Msa0741270:intron | 15.0% |
| !!! | CTACATTTTTTTTTTTTTTG+AGG | - | chr5_1:60818897-60818916 | None:intergenic | 15.0% |
| !! | TGTTTATATTGAAACTATAA+AGG | + | chr5_1:60819682-60819701 | Msa0741270:intron | 15.0% |
| !! | TAAAACTTATGTATAATACA+AGG | - | chr5_1:60821156-60821175 | None:intergenic | 15.0% |
| !! | TCAACAAAAAAAGACAAAAA+AGG | - | chr5_1:60816219-60816238 | None:intergenic | 20.0% |
| !! | AGTAAAAAAAATAGGAAACT+AGG | + | chr5_1:60816280-60816299 | Msa0741270:intron | 20.0% |
| !! | GTAAAAAAAATAGGAAACTA+GGG | + | chr5_1:60816281-60816300 | Msa0741270:intron | 20.0% |
| !!! | ATTCATAAGTCTCTTATTTT+TGG | + | chr5_1:60816380-60816399 | Msa0741270:intron | 20.0% |
| !! | TAAATTAGTTGAATCTTAAG+TGG | + | chr5_1:60816722-60816741 | Msa0741270:intron | 20.0% |
| !! | ACATAAGGAATAATAAGTAT+AGG | - | chr5_1:60816899-60816918 | None:intergenic | 20.0% |
| !! | ACAAAATCAAAAACAACATA+AGG | - | chr5_1:60816914-60816933 | None:intergenic | 20.0% |
| !! | TATATGTTTATTAGGAAGAA+AGG | - | chr5_1:60817629-60817648 | None:intergenic | 20.0% |
| !!! | TGCATTAATGATTAATTTGA+TGG | + | chr5_1:60818298-60818317 | Msa0741270:intron | 20.0% |
| !! | TTATATATCTAGACTAAAGA+CGG | - | chr5_1:60818511-60818530 | None:intergenic | 20.0% |
| !!! | ACTGTTTGTTTTTTGTATTT+TGG | + | chr5_1:60818606-60818625 | Msa0741270:intron | 20.0% |
| !!! | TATTCAGTTTTTTTTTCCAT+TGG | - | chr5_1:60818842-60818861 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGAGGGAAATA+TGG | - | chr5_1:60818888-60818907 | None:intergenic | 20.0% |
| !! | TGTCATGTTAAAATATACTT+AGG | + | chr5_1:60818944-60818963 | Msa0741270:intron | 20.0% |
| !! | GTCATGTTAAAATATACTTA+GGG | + | chr5_1:60818945-60818964 | Msa0741270:intron | 20.0% |
| !! | TCATGTTAAAATATACTTAG+GGG | + | chr5_1:60818946-60818965 | Msa0741270:intron | 20.0% |
| !! | TTTCAAATTGTTCAATTCAA+TGG | + | chr5_1:60819301-60819320 | Msa0741270:CDS | 20.0% |
| !!! | CATATAGATTTGTTAAAACA+AGG | - | chr5_1:60820025-60820044 | None:intergenic | 20.0% |
| !!! | CTTGTTTTAACAAATCTATA+TGG | + | chr5_1:60820023-60820042 | Msa0741270:intron | 20.0% |
| !! | TGAACTTGAATAATATTCTT+TGG | - | chr5_1:60820312-60820331 | None:intergenic | 20.0% |
| !!! | ATATTCATTATTTGTTATGC+AGG | - | chr5_1:60820740-60820759 | None:intergenic | 20.0% |
| !! | CTTCAATTATCAACTATTAA+TGG | - | chr5_1:60820788-60820807 | None:intergenic | 20.0% |
| !! | TCAATAAAGAACAAACTAAA+GGG | - | chr5_1:60821003-60821022 | None:intergenic | 20.0% |
| !! | ATCAATAAAGAACAAACTAA+AGG | - | chr5_1:60821004-60821023 | None:intergenic | 20.0% |
| !! | ACTCATAATTAATTACAAGT+GGG | - | chr5_1:60821119-60821138 | None:intergenic | 20.0% |
| !! | AACTCATAATTAATTACAAG+TGG | - | chr5_1:60821120-60821139 | None:intergenic | 20.0% |
| !!! | TGTTTTTTCATAAGAAAACT+TGG | + | chr5_1:60821441-60821460 | Msa0741270:three_prime_UTR | 20.0% |
| ! | AATCTTAAGTGGTTTATGTT+TGG | + | chr5_1:60816733-60816752 | Msa0741270:intron | 25.0% |
| ! | AGGAATAATAAGTATAGGTA+TGG | - | chr5_1:60816894-60816913 | None:intergenic | 25.0% |
| ! | AAAAATGCAAACTTTAGCTA+AGG | - | chr5_1:60816966-60816985 | None:intergenic | 25.0% |
| ! | TTAGCTCCAATTCTATAATT+AGG | - | chr5_1:60817112-60817131 | None:intergenic | 25.0% |
| ! | AGATTCACTTGAATCTTTAA+AGG | + | chr5_1:60817508-60817527 | Msa0741270:CDS | 25.0% |
| ! | GATTCACTTGAATCTTTAAA+GGG | + | chr5_1:60817509-60817528 | Msa0741270:CDS | 25.0% |
| !! | ATTCACTTGAATCTTTAAAG+GGG | + | chr5_1:60817510-60817529 | Msa0741270:CDS | 25.0% |
| !!! | AGTTCTTTTGGAGATAAAAT+AGG | + | chr5_1:60817584-60817603 | Msa0741270:intron | 25.0% |
| ! | AATTTCTTTAAGCACATAAC+TGG | - | chr5_1:60817663-60817682 | None:intergenic | 25.0% |
| !! | TTTTATTATTTGCACTCTTC+AGG | + | chr5_1:60817834-60817853 | Msa0741270:intron | 25.0% |
| !! | ATTTGACATGTTTTATCACA+TGG | - | chr5_1:60818264-60818283 | None:intergenic | 25.0% |
| !! | GCAACTGAATAATTTTTGTT+TGG | + | chr5_1:60818359-60818378 | Msa0741270:intron | 25.0% |
| !!! | ATTTTTTTTTTTGGCTTTGC+TGG | + | chr5_1:60818382-60818401 | Msa0741270:intron | 25.0% |
| !!! | TTTTTTTTTTTGGCTTTGCT+GGG | + | chr5_1:60818383-60818402 | Msa0741270:intron | 25.0% |
| !! | AACTTCATCAAGTTATTTCA+AGG | + | chr5_1:60818678-60818697 | Msa0741270:intron | 25.0% |
| !!! | TTGATTGTTGATTGATTTGT+AGG | + | chr5_1:60818712-60818731 | Msa0741270:intron | 25.0% |
| ! | CACATTTATATGAACTTGAA+GGG | + | chr5_1:60819220-60819239 | Msa0741270:CDS | 25.0% |
| ! | ATTGAACAATTTGAAAGATC+TGG | - | chr5_1:60819297-60819316 | None:intergenic | 25.0% |
| !!! | ACCTGAAATAAGTTCTTTTT+TGG | - | chr5_1:60819349-60819368 | None:intergenic | 25.0% |
| !! | ATATTATTCAAGTTCAATGC+AGG | + | chr5_1:60820316-60820335 | Msa0741270:CDS | 25.0% |
| !! | TTCAAATTGTCAATGCTTTT+TGG | + | chr5_1:60820342-60820361 | Msa0741270:intron | 25.0% |
| ! | ACTATTAATGGAAAAGTTAG+CGG | - | chr5_1:60820776-60820795 | None:intergenic | 25.0% |
| !! | GGGAAATAAGTAAGATTTTA+AGG | - | chr5_1:60821099-60821118 | None:intergenic | 25.0% |
| !!! | AATTTTGTTTGATCAACACT+TGG | + | chr5_1:60821253-60821272 | Msa0741270:three_prime_UTR | 25.0% |
| !!! | ATTTTGTTTGATCAACACTT+GGG | + | chr5_1:60821254-60821273 | Msa0741270:three_prime_UTR | 25.0% |
| ! | ATAGGTTACATATTATAGAG+TGG | + | chr5_1:60821319-60821338 | Msa0741270:three_prime_UTR | 25.0% |
| ! | AAAAACACAGAAATTTCTCA+AGG | - | chr5_1:60821428-60821447 | None:intergenic | 25.0% |
| GATCATGTGAAGATGAAAAT+GGG | - | chr5_1:60816177-60816196 | None:intergenic | 30.0% | |
| AGATCATGTGAAGATGAAAA+TGG | - | chr5_1:60816178-60816197 | None:intergenic | 30.0% | |
| CATTAAGCTTATGAAAGTGA+AGG | - | chr5_1:60816340-60816359 | None:intergenic | 30.0% | |
| GGAAAAAAGAAAGAAGAAGA+AGG | + | chr5_1:60816472-60816491 | Msa0741270:intron | 30.0% | |
| ! | TTCAATTAGCTTAATGCTAG+TGG | + | chr5_1:60816554-60816573 | Msa0741270:intron | 30.0% |
| !! | TGCATTTTTGTGATTTGTAG+AGG | + | chr5_1:60816977-60816996 | Msa0741270:intron | 30.0% |
| !! | GCATTTTTGTGATTTGTAGA+GGG | + | chr5_1:60816978-60816997 | Msa0741270:intron | 30.0% |
| CGGTTTCCTAATTATAGAAT+TGG | + | chr5_1:60817103-60817122 | Msa0741270:CDS | 30.0% | |
| CCTTCATAGATAACACTTTA+GGG | - | chr5_1:60817162-60817181 | None:intergenic | 30.0% | |
| TCCTTCATAGATAACACTTT+AGG | - | chr5_1:60817163-60817182 | None:intergenic | 30.0% | |
| ! | TAAAGTGTTATCTATGAAGG+AGG | + | chr5_1:60817162-60817181 | Msa0741270:CDS | 30.0% |
| CTTGCTAGTAAATTTGAGAA+GGG | + | chr5_1:60817244-60817263 | Msa0741270:CDS | 30.0% | |
| TAGTAAATTTGAGAAGGGTT+TGG | + | chr5_1:60817249-60817268 | Msa0741270:CDS | 30.0% | |
| !! | AGTTTTTCAACTAGAAAGCA+AGG | - | chr5_1:60817310-60817329 | None:intergenic | 30.0% |
| TGAAAAGCTTGATTAAAGTC+AGG | - | chr5_1:60817414-60817433 | None:intergenic | 30.0% | |
| ! | TAATCAAGCTTTTCATATGC+TGG | + | chr5_1:60817419-60817438 | Msa0741270:intron | 30.0% |
| !! | TCTTTTGGAGATAAAATAGG+AGG | + | chr5_1:60817587-60817606 | Msa0741270:intron | 30.0% |
| TAATTACAATGTTGCCTTCA+CGG | - | chr5_1:60817686-60817705 | None:intergenic | 30.0% | |
| CTTGTACTCTATGAAAATCA+TGG | + | chr5_1:60817716-60817735 | Msa0741270:intron | 30.0% | |
| ATGCATAGTGAATAAACTTG+AGG | + | chr5_1:60817772-60817791 | Msa0741270:intron | 30.0% | |
| ATAGTGAATAAACTTGAGGA+TGG | + | chr5_1:60817776-60817795 | Msa0741270:intron | 30.0% | |
| ! | ACTGGCAAATTTTCTTAAAC+AGG | + | chr5_1:60817927-60817946 | Msa0741270:CDS | 30.0% |
| TGCTAACTTATGTTACCTTA+TGG | + | chr5_1:60817953-60817972 | Msa0741270:intron | 30.0% | |
| TTACCTTATGGTATGCTAAA+AGG | + | chr5_1:60817965-60817984 | Msa0741270:intron | 30.0% | |
| ! | AATCCTTTTAGCATACCATA+AGG | - | chr5_1:60817971-60817990 | None:intergenic | 30.0% |
| TATACTCTCAGCATATGTAA+CGG | - | chr5_1:60818062-60818081 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTGGCTTTGCTG+GGG | + | chr5_1:60818384-60818403 | Msa0741270:intron | 30.0% |
| TATTTCGTATATACCTTGCT+TGG | - | chr5_1:60818476-60818495 | None:intergenic | 30.0% | |
| AAATATCGAGTAACTCATCA+TGG | - | chr5_1:60819010-60819029 | None:intergenic | 30.0% | |
| GATAAATTTCTCCGATTAAG+TGG | + | chr5_1:60819090-60819109 | Msa0741270:intron | 30.0% | |
| !! | AAAGCATTGTGAAGGATAAA+CGG | - | chr5_1:60819162-60819181 | None:intergenic | 30.0% |
| !! | TTATCTGAAAAGCATTGTGA+AGG | - | chr5_1:60819170-60819189 | None:intergenic | 30.0% |
| ! | ACAATGCTTTTCAGATAACA+AGG | + | chr5_1:60819172-60819191 | Msa0741270:intron | 30.0% |
| ! | CCTTCAAGTTCATATAAATG+TGG | - | chr5_1:60819222-60819241 | None:intergenic | 30.0% |
| CCACATTTATATGAACTTGA+AGG | + | chr5_1:60819219-60819238 | Msa0741270:CDS | 30.0% | |
| GCCAAAAAAGAACTTATTTC+AGG | + | chr5_1:60819345-60819364 | Msa0741270:CDS | 30.0% | |
| TATGTTGAGCATGAAAGTTA+TGG | + | chr5_1:60819423-60819442 | Msa0741270:intron | 30.0% | |
| ! | TAATGCACTTTTCTCTTTTC+AGG | + | chr5_1:60819477-60819496 | Msa0741270:intron | 30.0% |
| CGTAACTTCTAAATCAAATG+TGG | - | chr5_1:60819639-60819658 | None:intergenic | 30.0% | |
| ATTGATGCTCATATACTACT+AGG | - | chr5_1:60819858-60819877 | None:intergenic | 30.0% | |
| !! | CGTCCATTTTATTTCTCATT+TGG | + | chr5_1:60819937-60819956 | Msa0741270:intron | 30.0% |
| TGGCCAAATGAGAAATAAAA+TGG | - | chr5_1:60819943-60819962 | None:intergenic | 30.0% | |
| CTACCTGAAAATATCAAACA+CGG | - | chr5_1:60820187-60820206 | None:intergenic | 30.0% | |
| AGTACATGAATAGATTCAGT+TGG | - | chr5_1:60820239-60820258 | None:intergenic | 30.0% | |
| TCTATTCATGTACTTCATGT+TGG | + | chr5_1:60820245-60820264 | Msa0741270:CDS | 30.0% | |
| TACTTCATGTTGGAAAAATG+AGG | + | chr5_1:60820255-60820274 | Msa0741270:CDS | 30.0% | |
| !!! | TCTTGTTTTCTTTAGCTTTG+TGG | + | chr5_1:60820490-60820509 | Msa0741270:intron | 30.0% |
| !! | ACAAAAGAAAGTCCTTGTTT+TGG | - | chr5_1:60820562-60820581 | None:intergenic | 30.0% |
| ! | ACAAGGACTTTCTTTTGTAT+TGG | + | chr5_1:60820564-60820583 | Msa0741270:CDS | 30.0% |
| TTCATTTACGTTATAGTTGC+TGG | + | chr5_1:60820961-60820980 | Msa0741270:intron | 30.0% | |
| CAATATAACATAACAAGCCA+CGG | - | chr5_1:60821187-60821206 | None:intergenic | 30.0% | |
| GTTATGTTATATTGGTAAGC+TGG | + | chr5_1:60821193-60821212 | Msa0741270:intron | 30.0% | |
| ! | TGGTAATGATTCATATCTTG+TGG | + | chr5_1:60821213-60821232 | Msa0741270:intron | 30.0% |
| ! | TGAGTTGACTAGAGATTTAT+AGG | + | chr5_1:60821301-60821320 | Msa0741270:three_prime_UTR | 30.0% |
| TATTATAGAGTGGTTGCAAA+TGG | + | chr5_1:60821329-60821348 | Msa0741270:three_prime_UTR | 30.0% | |
| ATTATAGAGTGGTTGCAAAT+GGG | + | chr5_1:60821330-60821349 | Msa0741270:three_prime_UTR | 30.0% | |
| CAACTTGGTTATTCAACAAC+GGG | - | chr5_1:60816110-60816129 | None:intergenic | 35.0% | |
| GCAACTTGGTTATTCAACAA+CGG | - | chr5_1:60816111-60816130 | None:intergenic | 35.0% | |
| TTGTAGCAGTAGATGCAAAA+GGG | - | chr5_1:60816139-60816158 | None:intergenic | 35.0% | |
| ATTGTAGCAGTAGATGCAAA+AGG | - | chr5_1:60816140-60816159 | None:intergenic | 35.0% | |
| CTATATGATAAGTCCCTGTT+TGG | + | chr5_1:60816642-60816661 | Msa0741270:intron | 35.0% | |
| TATAGGTATGGTTCCACTTT+GGG | - | chr5_1:60816882-60816901 | None:intergenic | 35.0% | |
| !! | TTTTTGTGATTTGTAGAGGG+AGG | + | chr5_1:60816981-60817000 | Msa0741270:intron | 35.0% |
| ! | ATGTGGTATTTGCTACTAGT+CGG | + | chr5_1:60817083-60817102 | Msa0741270:CDS | 35.0% |
| ! | CCCTAAAGTGTTATCTATGA+AGG | + | chr5_1:60817159-60817178 | Msa0741270:CDS | 35.0% |
| CCTTCTCAAATTTACTAGCA+AGG | - | chr5_1:60817246-60817265 | None:intergenic | 35.0% | |
| CCTTGCTAGTAAATTTGAGA+AGG | + | chr5_1:60817243-60817262 | Msa0741270:CDS | 35.0% | |
| TTCATATGCTGGTGAAATTC+AGG | + | chr5_1:60817430-60817449 | Msa0741270:intron | 35.0% | |
| ! | ATTGCTATGGTGAGTTCTTT+TGG | + | chr5_1:60817572-60817591 | Msa0741270:intron | 35.0% |
| TGCTTAAAGAAATTCCGTGA+AGG | + | chr5_1:60817669-60817688 | Msa0741270:intron | 35.0% | |
| TAGCAGTTCAGTTAACTCAA+AGG | + | chr5_1:60817866-60817885 | Msa0741270:CDS | 35.0% | |
| AGCAGTTCAGTTAACTCAAA+GGG | + | chr5_1:60817867-60817886 | Msa0741270:CDS | 35.0% | |
| TTCAGTTAACTCAAAGGGAA+GGG | + | chr5_1:60817872-60817891 | Msa0741270:CDS | 35.0% | |
| GTTGTGAAAGAGATATGCTT+TGG | + | chr5_1:60818001-60818020 | Msa0741270:intron | 35.0% | |
| ! | GAGAGTATAGATTCATTTGC+AGG | + | chr5_1:60818073-60818092 | Msa0741270:intron | 35.0% |
| !! | TGCTAAGAAACTTGTTGATG+AGG | + | chr5_1:60818106-60818125 | Msa0741270:CDS | 35.0% |
| GTGCAGAAATAGATAATGCT+AGG | + | chr5_1:60818144-60818163 | Msa0741270:CDS | 35.0% | |
| AAAAATACAAACCTGCTTCC+CGG | - | chr5_1:60818228-60818247 | None:intergenic | 35.0% | |
| ATTAATGAAGGAGGTTCAAG+AGG | + | chr5_1:60818424-60818443 | Msa0741270:CDS | 35.0% | |
| !! | GTTGATTGATTTGTAGGTCA+TGG | + | chr5_1:60818718-60818737 | Msa0741270:intron | 35.0% |
| ! | TGATTTGTAGGTCATGGATA+TGG | + | chr5_1:60818724-60818743 | Msa0741270:intron | 35.0% |
| ! | AACATGAACTTCAAGCATTG+AGG | + | chr5_1:60818747-60818766 | Msa0741270:CDS | 35.0% |
| !! | ACATGAACTTCAAGCATTGA+GGG | + | chr5_1:60818748-60818767 | Msa0741270:CDS | 35.0% |
| ACATTATCTTCGACTTCAGA+AGG | + | chr5_1:60818793-60818812 | Msa0741270:CDS | 35.0% | |
| AGTCCATATTCCTATCATTG+AGG | + | chr5_1:60818918-60818937 | Msa0741270:intron | 35.0% | |
| TCTTTGAGCAATGTCTTGAA+CGG | + | chr5_1:60818970-60818989 | Msa0741270:intron | 35.0% | |
| TCACTCACGACAATAAAAAG+TGG | - | chr5_1:60819068-60819087 | None:intergenic | 35.0% | |
| ATGTAACTGCTCCACTTAAT+CGG | - | chr5_1:60819104-60819123 | None:intergenic | 35.0% | |
| CAGATAACAAGGACAAAGAA+AGG | + | chr5_1:60819183-60819202 | Msa0741270:intron | 35.0% | |
| AATTTGCAAATAGGAGCCTA+AGG | - | chr5_1:60819253-60819272 | None:intergenic | 35.0% | |
| GCAAGGTTGAATTTGCAAAT+AGG | - | chr5_1:60819262-60819281 | None:intergenic | 35.0% | |
| CAGAAAATGTTGTCTTCAAC+AGG | - | chr5_1:60819394-60819413 | None:intergenic | 35.0% | |
| AATATTCGTCCGACATCAAA+TGG | - | chr5_1:60819531-60819550 | None:intergenic | 35.0% | |
| ! | TAGTTGAAAGTATGATGTGC+TGG | - | chr5_1:60819578-60819597 | None:intergenic | 35.0% |
| CACATCATACTTTCAACTAC+TGG | + | chr5_1:60819579-60819598 | Msa0741270:CDS | 35.0% | |
| ATGCTCATATACTACTAGGA+GGG | - | chr5_1:60819854-60819873 | None:intergenic | 35.0% | |
| ! | ATGCCGTGTTTGATATTTTC+AGG | + | chr5_1:60820181-60820200 | Msa0741270:intron | 35.0% |
| GTAGTTGTAACACAAATGAG+TGG | + | chr5_1:60820203-60820222 | Msa0741270:CDS | 35.0% | |
| !!! | CATTGATTTTCTCATCTGAC+TGG | - | chr5_1:60820701-60820720 | None:intergenic | 35.0% |
| !! | TAAGTTTTAACAGTGAACCG+TGG | + | chr5_1:60821167-60821186 | Msa0741270:three_prime_UTR | 35.0% |
| !! | CGTGGCTTGTTATGTTATAT+TGG | + | chr5_1:60821185-60821204 | Msa0741270:intron | 35.0% |
| ACTCTCATTGCACTTATCTA+TGG | + | chr5_1:60821395-60821414 | Msa0741270:three_prime_UTR | 35.0% | |
| TTGCACTTATCTATGGACAT+TGG | + | chr5_1:60821402-60821421 | Msa0741270:three_prime_UTR | 35.0% | |
| !! | AAAAGCATCAACAAGACCAG+TGG | + | chr5_1:60816079-60816098 | Msa0741270:five_prime_UTR | 40.0% |
| GAAGATGAAAATGGGTGGTT+AGG | - | chr5_1:60816169-60816188 | None:intergenic | 40.0% | |
| CATGTGAAGATGAAAATGGG+TGG | - | chr5_1:60816174-60816193 | None:intergenic | 40.0% | |
| ! | AATTTTCACTGCTCCCAAAG+TGG | + | chr5_1:60816866-60816885 | Msa0741270:intron | 40.0% |
| GTATAGGTATGGTTCCACTT+TGG | - | chr5_1:60816883-60816902 | None:intergenic | 40.0% | |
| TGGCGATACAATGCAAAAAG+AGG | + | chr5_1:60817039-60817058 | Msa0741270:CDS | 40.0% | |
| TGGAGCTAACGATCAGATAA+TGG | + | chr5_1:60817123-60817142 | Msa0741270:CDS | 40.0% | |
| ! | AGCTAACGATCAGATAATGG+AGG | + | chr5_1:60817126-60817145 | Msa0741270:CDS | 40.0% |
| AAGAAACAAGGATGATGTCG+AGG | + | chr5_1:60817544-60817563 | Msa0741270:CDS | 40.0% | |
| GTTCAGTTAACTCAAAGGGA+AGG | + | chr5_1:60817871-60817890 | Msa0741270:CDS | 40.0% | |
| TCAGTTAACTCAAAGGGAAG+GGG | + | chr5_1:60817873-60817892 | Msa0741270:CDS | 40.0% | |
| AGGGGAACTATTACAAGAGA+AGG | + | chr5_1:60817891-60817910 | Msa0741270:CDS | 40.0% | |
| ACTATTACAAGAGAAGGCAG+AGG | + | chr5_1:60817897-60817916 | Msa0741270:CDS | 40.0% | |
| GAAGGCAGAGGTTAAAAAAC+TGG | + | chr5_1:60817909-60817928 | Msa0741270:CDS | 40.0% | |
| GGACGTGGAACAATTAATGA+AGG | + | chr5_1:60818412-60818431 | Msa0741270:intron | 40.0% | |
| CGTGGAACAATTAATGAAGG+AGG | + | chr5_1:60818415-60818434 | Msa0741270:CDS | 40.0% | |
| TTCCTCCATAGCGTAGTTAA+TGG | + | chr5_1:60818579-60818598 | Msa0741270:intron | 40.0% | |
| TTCAGCCATTAACTACGCTA+TGG | - | chr5_1:60818587-60818606 | None:intergenic | 40.0% | |
| GAAGAAATCCAATTCCACGT+GGG | - | chr5_1:60818647-60818666 | None:intergenic | 40.0% | |
| AGAAGAAATCCAATTCCACG+TGG | - | chr5_1:60818648-60818667 | None:intergenic | 40.0% | |
| CTGAAGTCGAAGATAATGTC+TGG | - | chr5_1:60818792-60818811 | None:intergenic | 40.0% | |
| TTATCTTCGACTTCAGAAGG+AGG | + | chr5_1:60818796-60818815 | Msa0741270:CDS | 40.0% | |
| CCATTGGCATGAGATTATAC+AGG | - | chr5_1:60818826-60818845 | None:intergenic | 40.0% | |
| CCTGTATAATCTCATGCCAA+TGG | + | chr5_1:60818823-60818842 | Msa0741270:intron | 40.0% | |
| CTGCCTCAATGATAGGAATA+TGG | - | chr5_1:60818924-60818943 | None:intergenic | 40.0% | |
| CAATGTCTTGAACGGTAAGA+TGG | + | chr5_1:60818978-60818997 | Msa0741270:intron | 40.0% | |
| AACAAGGACAAAGAAAGGAG+AGG | + | chr5_1:60819188-60819207 | Msa0741270:CDS | 40.0% | |
| CTTGAAGGGAATGAAACCTT+AGG | + | chr5_1:60819234-60819253 | Msa0741270:CDS | 40.0% | |
| GAAACGATACCTGGATCTAT+TGG | - | chr5_1:60819606-60819625 | None:intergenic | 40.0% | |
| TGACTCAATGAAACGATACC+TGG | - | chr5_1:60819615-60819634 | None:intergenic | 40.0% | |
| !! | AATTGCTTTTATGCAGCTGC+TGG | + | chr5_1:60819740-60819759 | Msa0741270:intron | 40.0% |
| !!! | TTTTATGCAGCTGCTGGTTT+GGG | + | chr5_1:60819746-60819765 | Msa0741270:intron | 40.0% |
| GATGCTCATATACTACTAGG+AGG | - | chr5_1:60819855-60819874 | None:intergenic | 40.0% | |
| ATGAGGATCAAACTCTGCAA+AGG | + | chr5_1:60820272-60820291 | Msa0741270:CDS | 40.0% | |
| !!! | CTATTTTGGCAGCCAAAACA+AGG | + | chr5_1:60820547-60820566 | Msa0741270:CDS | 40.0% |
| ! | CTTTTGAATCAGAGCGAGAA+AGG | + | chr5_1:60820587-60820606 | Msa0741270:CDS | 40.0% |
| AAATCTCCTTGCAAGCATGA+TGG | - | chr5_1:60820620-60820639 | None:intergenic | 40.0% | |
| TGTAAACACATGTGTCACGT+CGG | + | chr5_1:60820894-60820913 | Msa0741270:intron | 40.0% | |
| TCTAGTCAACTCACTCACAA+AGG | - | chr5_1:60821294-60821313 | None:intergenic | 40.0% | |
| TAGCAGTAGATGCAAAAGGG+TGG | - | chr5_1:60816136-60816155 | None:intergenic | 45.0% | |
| TGTCACTGCAGAACCAAACA+GGG | - | chr5_1:60816658-60816677 | None:intergenic | 45.0% | |
| TTGTCACTGCAGAACCAAAC+AGG | - | chr5_1:60816659-60816678 | None:intergenic | 45.0% | |
| ! | TTGTGATTTGTAGAGGGAGG+TGG | + | chr5_1:60816984-60817003 | Msa0741270:intron | 45.0% |
| GTGGTTGTAAGAGATGACGA+GGG | + | chr5_1:60817003-60817022 | Msa0741270:exon | 45.0% | |
| ! | ACGAGGGTAACTCGTGATTT+TGG | + | chr5_1:60817019-60817038 | Msa0741270:CDS | 45.0% |
| !! | CGATCAGATAATGGAGGCAA+AGG | + | chr5_1:60817132-60817151 | Msa0741270:CDS | 45.0% |
| GAACTGAGAGACGATTATGC+TGG | - | chr5_1:60817219-60817238 | None:intergenic | 45.0% | |
| ATTTGAGAAGGGTTTGGCTG+CGG | + | chr5_1:60817255-60817274 | Msa0741270:CDS | 45.0% | |
| ACTTAGAGAAGCAGCATCGT+TGG | + | chr5_1:60817457-60817476 | Msa0741270:CDS | 45.0% | |
| ! | TGAATCTTTAAAGGGGCGTG+TGG | + | chr5_1:60817517-60817536 | Msa0741270:CDS | 45.0% |
| TGTCGAGGATGCTATTGCTA+TGG | + | chr5_1:60817559-60817578 | Msa0741270:CDS | 45.0% | |
| GAGAGAATGTCTCAAGCTTC+CGG | + | chr5_1:60818206-60818225 | Msa0741270:CDS | 45.0% | |
| AGAGAATGTCTCAAGCTTCC+GGG | + | chr5_1:60818207-60818226 | Msa0741270:CDS | 45.0% | |
| !!! | TTTGGCTTTGCTGGGGTTTT+AGG | + | chr5_1:60818391-60818410 | Msa0741270:intron | 45.0% |
| AGCCATTAACTACGCTATGG+AGG | - | chr5_1:60818584-60818603 | None:intergenic | 45.0% | |
| ATGTCTTTCCCACGTGGAAT+TGG | + | chr5_1:60818636-60818655 | Msa0741270:intron | 45.0% | |
| CATGACACTGCCTCAATGAT+AGG | - | chr5_1:60818931-60818950 | None:intergenic | 45.0% | |
| ! | TCTGGAGCATTATCAGAGCA+AGG | - | chr5_1:60819279-60819298 | None:intergenic | 45.0% |
| !! | TGGTGTCGTGTATCATCTGA+TGG | + | chr5_1:60819321-60819340 | Msa0741270:CDS | 45.0% |
| GCACCTGAACCATTTGATGT+CGG | + | chr5_1:60819519-60819538 | Msa0741270:CDS | 45.0% | |
| ACTACTGGTCCAATAGATCC+AGG | + | chr5_1:60819594-60819613 | Msa0741270:CDS | 45.0% | |
| !! | CTTTTATGCAGCTGCTGGTT+TGG | + | chr5_1:60819745-60819764 | Msa0741270:intron | 45.0% |
| ! | TGGTTTGGGAACCTATGTAG+AGG | + | chr5_1:60819760-60819779 | Msa0741270:CDS | 45.0% |
| TCTCACAAGTGCCTCTACAT+AGG | - | chr5_1:60819774-60819793 | None:intergenic | 45.0% | |
| TTGTAGTTACGTTACGAGCG+CGG | - | chr5_1:60820051-60820070 | None:intergenic | 45.0% | |
| !! | CTTTAGCTTTGTGGAGTTCG+AGG | + | chr5_1:60820499-60820518 | Msa0741270:intron | 45.0% |
| CTGACACACACACACAACAT+CGG | + | chr5_1:60820810-60820829 | Msa0741270:intron | 45.0% | |
| ! | CTTCAGATTGAAGGTGTGTC+TGG | - | chr5_1:60820923-60820942 | None:intergenic | 45.0% |
| ! | ACGTTATAGTTGCTGGCTGT+AGG | + | chr5_1:60820968-60820987 | Msa0741270:intron | 45.0% |
| CAGATGACAGAGCTCCATTA+GGG | + | chr5_1:60821060-60821079 | Msa0741270:CDS | 45.0% | |
| GAGACTCATCATGTCCCTAA+TGG | - | chr5_1:60821077-60821096 | None:intergenic | 45.0% | |
| !! | AATTCTTAAAAAAAAAAAAA+AGG | - | chr5_1:60817364-60817383 | None:intergenic | 5.0% |
| GAGAGAGAGAGAGAGAGGTA+TGG | - | chr5_1:60816048-60816067 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr5_1:60816051-60816070 | None:intergenic | 50.0% | |
| TCAACAACGGGAATCACCAC+TGG | - | chr5_1:60816098-60816117 | None:intergenic | 50.0% | |
| GGTGGTTGTAAGAGATGACG+AGG | + | chr5_1:60817002-60817021 | Msa0741270:exon | 50.0% | |
| ACCACATCAGAAGACACTGC+AGG | - | chr5_1:60817070-60817089 | None:intergenic | 50.0% | |
| GCGTGAGACTGCTATGTTGT+TGG | + | chr5_1:60817192-60817211 | Msa0741270:CDS | 50.0% | |
| GGCTGCTAAGTTGTCTGAAG+AGG | + | chr5_1:60817276-60817295 | Msa0741270:CDS | 50.0% | |
| ! | CGATGCTGCTTCTCTAAGTC+TGG | - | chr5_1:60817456-60817475 | None:intergenic | 50.0% |
| ! | ATCTTTAAAGGGGCGTGTGG+CGG | + | chr5_1:60817520-60817539 | Msa0741270:CDS | 50.0% |
| TAGGTCAGCTGTTCAGAGAG+TGG | + | chr5_1:60818163-60818182 | Msa0741270:CDS | 50.0% | |
| !!! | TTTGCTGGGGTTTTAGGACG+TGG | + | chr5_1:60818397-60818416 | Msa0741270:intron | 50.0% |
| AATGCTGCATCAGCCAAGCA+AGG | + | chr5_1:60818460-60818479 | Msa0741270:CDS | 50.0% | |
| ATCGACATGTCTTTCCCACG+TGG | + | chr5_1:60818630-60818649 | Msa0741270:intron | 50.0% | |
| CGTCCGACATCAAATGGTTC+AGG | - | chr5_1:60819525-60819544 | None:intergenic | 50.0% | |
| !! | TAGCTTTGTGGAGTTCGAGG+CGG | + | chr5_1:60820502-60820521 | Msa0741270:intron | 50.0% |
| ATGCAGCCATCATGCTTGCA+AGG | + | chr5_1:60820611-60820630 | Msa0741270:CDS | 50.0% | |
| ! | GCACTGACGCTTCAGATTGA+AGG | - | chr5_1:60820932-60820951 | None:intergenic | 50.0% |
| CCTAATGGAGCTCTGTCATC+TGG | - | chr5_1:60821062-60821081 | None:intergenic | 50.0% | |
| CCAGATGACAGAGCTCCATT+AGG | + | chr5_1:60821059-60821078 | Msa0741270:CDS | 50.0% | |
| GTGCAATGAGAGTGAGACTG+AGG | - | chr5_1:60821388-60821407 | None:intergenic | 50.0% | |
| GCAAAAGGGTGGCTGCAACT+TGG | - | chr5_1:60816125-60816144 | None:intergenic | 55.0% | |
| GCCTGCAGTGTCTTCTGATG+TGG | + | chr5_1:60817066-60817085 | Msa0741270:CDS | 55.0% | |
| ! | TCTTTAAAGGGGCGTGTGGC+GGG | + | chr5_1:60817521-60817540 | Msa0741270:CDS | 55.0% |
| GAGAGTGGAAGAGTCGCTTC+AGG | + | chr5_1:60818178-60818197 | Msa0741270:CDS | 55.0% | |
| ! | CTGCGGCACAGGCACTATTT+TGG | + | chr5_1:60820533-60820552 | Msa0741270:CDS | 55.0% |
| ! | GCGTGTGGCGGGAAGAAACA+AGG | + | chr5_1:60817532-60817551 | Msa0741270:CDS | 60.0% |
| GTCTCAAGCTTCCGGGAAGC+AGG | + | chr5_1:60818214-60818233 | Msa0741270:CDS | 60.0% | |
| CTTTGTGGAGTTCGAGGCGG+TGG | + | chr5_1:60820505-60820524 | Msa0741270:CDS | 60.0% | |
| TCGAGGCGGTGGAAATGCTG+CGG | + | chr5_1:60820516-60820535 | Msa0741270:CDS | 60.0% | |
| CGGTGGAAATGCTGCGGCAC+AGG | + | chr5_1:60820522-60820541 | Msa0741270:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 60816036 | 60821540 | 60816036 | ID=Msa0741270;Name=Msa0741270 |
| chr5_1 | mRNA | 60816036 | 60821540 | 60816036 | ID=Msa0741270-mRNA-1;Parent=Msa0741270;Name=Msa0741270-mRNA-1;_AED=0.08;_eAED=0.08;_QI=184|1|1|1|0.78|0.66|15|396|494 |
| chr5_1 | exon | 60816036 | 60816200 | 60816036 | ID=Msa0741270-mRNA-1:exon:17580;Parent=Msa0741270-mRNA-1 |
| chr5_1 | exon | 60816997 | 60817297 | 60816997 | ID=Msa0741270-mRNA-1:exon:17581;Parent=Msa0741270-mRNA-1 |
| chr5_1 | exon | 60817452 | 60817580 | 60817452 | ID=Msa0741270-mRNA-1:exon:17582;Parent=Msa0741270-mRNA-1 |
| chr5_1 | exon | 60817856 | 60817948 | 60817856 | ID=Msa0741270-mRNA-1:exon:17583;Parent=Msa0741270-mRNA-1 |
| chr5_1 | exon | 60818095 | 60818235 | 60818095 | ID=Msa0741270-mRNA-1:exon:17584;Parent=Msa0741270-mRNA-1 |
| chr5_1 | exon | 60818413 | 60818481 | 60818413 | ID=Msa0741270-mRNA-1:exon:17585;Parent=Msa0741270-mRNA-1 |
| chr5_1 | exon | 60818734 | 60818817 | 60818734 | ID=Msa0741270-mRNA-1:exon:17586;Parent=Msa0741270-mRNA-1 |
| chr5_1 | exon | 60819186 | 60819366 | 60819186 | ID=Msa0741270-mRNA-1:exon:17587;Parent=Msa0741270-mRNA-1 |
| chr5_1 | exon | 60819499 | 60819615 | 60819499 | ID=Msa0741270-mRNA-1:exon:17588;Parent=Msa0741270-mRNA-1 |
| chr5_1 | exon | 60819756 | 60819814 | 60819756 | ID=Msa0741270-mRNA-1:exon:17589;Parent=Msa0741270-mRNA-1 |
| chr5_1 | exon | 60820203 | 60820337 | 60820203 | ID=Msa0741270-mRNA-1:exon:17590;Parent=Msa0741270-mRNA-1 |
| chr5_1 | exon | 60820505 | 60820654 | 60820505 | ID=Msa0741270-mRNA-1:exon:17591;Parent=Msa0741270-mRNA-1 |
| chr5_1 | exon | 60821044 | 60821193 | 60821044 | ID=Msa0741270-mRNA-1:exon:17592;Parent=Msa0741270-mRNA-1 |
| chr5_1 | exon | 60821215 | 60821473 | 60821215 | ID=Msa0741270-mRNA-1:exon:17593;Parent=Msa0741270-mRNA-1 |
| chr5_1 | exon | 60821509 | 60821540 | 60821509 | ID=Msa0741270-mRNA-1:exon:17594;Parent=Msa0741270-mRNA-1 |
| chr5_1 | five_prime_UTR | 60816036 | 60816200 | 60816036 | ID=Msa0741270-mRNA-1:five_prime_utr;Parent=Msa0741270-mRNA-1 |
| chr5_1 | five_prime_UTR | 60816997 | 60817015 | 60816997 | ID=Msa0741270-mRNA-1:five_prime_utr;Parent=Msa0741270-mRNA-1 |
| chr5_1 | CDS | 60817016 | 60817297 | 60817016 | ID=Msa0741270-mRNA-1:cds;Parent=Msa0741270-mRNA-1 |
| chr5_1 | CDS | 60817452 | 60817580 | 60817452 | ID=Msa0741270-mRNA-1:cds;Parent=Msa0741270-mRNA-1 |
| chr5_1 | CDS | 60817856 | 60817948 | 60817856 | ID=Msa0741270-mRNA-1:cds;Parent=Msa0741270-mRNA-1 |
| chr5_1 | CDS | 60818095 | 60818235 | 60818095 | ID=Msa0741270-mRNA-1:cds;Parent=Msa0741270-mRNA-1 |
| chr5_1 | CDS | 60818413 | 60818481 | 60818413 | ID=Msa0741270-mRNA-1:cds;Parent=Msa0741270-mRNA-1 |
| chr5_1 | CDS | 60818734 | 60818817 | 60818734 | ID=Msa0741270-mRNA-1:cds;Parent=Msa0741270-mRNA-1 |
| chr5_1 | CDS | 60819186 | 60819366 | 60819186 | ID=Msa0741270-mRNA-1:cds;Parent=Msa0741270-mRNA-1 |
| chr5_1 | CDS | 60819499 | 60819615 | 60819499 | ID=Msa0741270-mRNA-1:cds;Parent=Msa0741270-mRNA-1 |
| chr5_1 | CDS | 60819756 | 60819814 | 60819756 | ID=Msa0741270-mRNA-1:cds;Parent=Msa0741270-mRNA-1 |
| chr5_1 | CDS | 60820203 | 60820337 | 60820203 | ID=Msa0741270-mRNA-1:cds;Parent=Msa0741270-mRNA-1 |
| chr5_1 | CDS | 60820505 | 60820654 | 60820505 | ID=Msa0741270-mRNA-1:cds;Parent=Msa0741270-mRNA-1 |
| chr5_1 | CDS | 60821044 | 60821088 | 60821044 | ID=Msa0741270-mRNA-1:cds;Parent=Msa0741270-mRNA-1 |
| chr5_1 | three_prime_UTR | 60821089 | 60821193 | 60821089 | ID=Msa0741270-mRNA-1:three_prime_utr;Parent=Msa0741270-mRNA-1 |
| chr5_1 | three_prime_UTR | 60821215 | 60821473 | 60821215 | ID=Msa0741270-mRNA-1:three_prime_utr;Parent=Msa0741270-mRNA-1 |
| chr5_1 | three_prime_UTR | 60821509 | 60821540 | 60821509 | ID=Msa0741270-mRNA-1:three_prime_utr;Parent=Msa0741270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
