AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0820990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820990 MtrunA17_Chr5g0441311 99.750 400 1 0 3 402 106 505 0.0 826
Msa0820990 MtrunA17_Chr3g0093711 87.089 395 51 0 3 397 91 485 0.0 713
Msa0820990 MtrunA17_Chr7g0255781 61.168 394 152 1 3 396 96 488 1.25e-179 509
Msa0820990 MtrunA17_Chr6g0482421 58.333 120 35 3 1 119 9 114 1.31e-32 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820990 AT2G26770.2 78.195 399 87 0 3 401 95 493 0.0 658
Msa0820990 AT2G26770.3 78.195 399 87 0 3 401 95 493 0.0 658
Msa0820990 AT2G26770.1 78.195 399 87 0 3 401 95 493 0.0 658
Msa0820990 AT3G56480.1 58.186 397 162 3 3 396 95 490 6.03e-163 467
Msa0820990 AT2G40820.3 55.303 396 174 2 3 396 110 504 3.35e-156 450
Msa0820990 AT2G40820.2 55.303 396 174 2 3 396 98 492 4.05e-156 449
Msa0820990 AT2G40820.1 55.303 396 174 2 3 396 98 492 4.05e-156 449
Msa0820990 AT2G40820.4 55.303 396 174 2 3 396 123 517 7.05e-156 450
Msa0820990 AT2G40820.5 55.352 383 168 2 16 396 1 382 2.97e-153 438

Find 91 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGTTGACTAGAGATTTAT+AGG 0.202805 5_3:-58701265 Msa0820990:three_prime_UTR
AGATTCACTTGAATCTTTAA+AGG 0.229773 5_3:-58705058 Msa0820990:CDS
CTGCGGCACAGGCACTATTT+TGG 0.245447 5_3:-58702033 Msa0820990:CDS
CGTGGCTTGTTATGTTATAT+TGG 0.254043 5_3:-58701381 Msa0820990:three_prime_UTR
TGAACTTGAATAATATTCTT+TGG 0.279096 5_3:+58702257 None:intergenic
GCAAGGTTGAATTTGCAAAT+AGG 0.304721 5_3:+58703307 None:intergenic
ATTGAACAATTTGAAAGATC+TGG 0.331159 5_3:+58703272 None:intergenic
ACTCTCATTGCACTTATCTA+TGG 0.337805 5_3:-58701171 Msa0820990:three_prime_UTR
GAAACGATACCTGGATCTAT+TGG 0.343800 5_3:+58702963 None:intergenic
ACAAAAGAAAGTCCTTGTTT+TGG 0.350532 5_3:+58702007 None:intergenic
GAGAGAATGTCTCAAGCTTC+CGG 0.356262 5_3:-58704360 Msa0820990:CDS
GATTCACTTGAATCTTTAAA+GGG 0.364770 5_3:-58705057 Msa0820990:CDS
TTTCAAATTGTTCAATTCAA+TGG 0.375625 5_3:-58703265 Msa0820990:CDS
TGATTTGTAGGTCATGGATA+TGG 0.378136 5_3:-58703842 Msa0820990:intron
TAATGGCAGATCATGCTTGC+TGG 0.391824 5_3:-58701531 Msa0820990:intron
CCAGATGACAGAGCTCCATT+AGG 0.399289 5_3:-58701507 Msa0820990:CDS
CCTAATGGAGCTCTGTCATC+TGG 0.403344 5_3:+58701507 None:intergenic
CGGTGGAAATGCTGCGGCAC+AGG 0.409902 5_3:-58702044 Msa0820990:CDS
CGTCCGACATCAAATGGTTC+AGG 0.413959 5_3:+58703044 None:intergenic
GAGACTCATCATGTCCCTAA+TGG 0.414575 5_3:+58701492 None:intergenic
AGAGAATGTCTCAAGCTTCC+GGG 0.422863 5_3:-58704359 Msa0820990:CDS
GAGAGTGGAAGAGTCGCTTC+AGG 0.424559 5_3:-58704388 Msa0820990:CDS
CTTTGTGGAGTTCGAGGCGG+TGG 0.433322 5_3:-58702061 Msa0820990:CDS
GTCTCAAGCTTCCGGGAAGC+AGG 0.435496 5_3:-58704352 Msa0820990:intron
CCACATTTATATGAACTTGA+AGG 0.435639 5_3:-58703347 Msa0820990:CDS
TCTTTAAAGGGGCGTGTGGC+GGG 0.444564 5_3:-58705045 Msa0820990:CDS
CGATGCTGCTTCTCTAAGTC+TGG 0.446998 5_3:+58705113 None:intergenic
GTTATGTTATATTGGTAAGC+TGG 0.449794 5_3:-58701373 Msa0820990:three_prime_UTR
TATTTCGTATATACCTTGCT+TGG 0.451392 5_3:+58704093 None:intergenic
CTTTAGCTTTGTGGAGTTCG+AGG 0.452307 5_3:-58702067 Msa0820990:intron
CAGATAACAAGGACAAAGAA+AGG 0.464921 5_3:-58703383 Msa0820990:CDS
CACATCATACTTTCAACTAC+TGG 0.472340 5_3:-58702987 Msa0820990:CDS
CAGATGACAGAGCTCCATTA+GGG 0.473664 5_3:-58701506 Msa0820990:CDS
TCTCACAAGTGCCTCTACAT+AGG 0.482662 5_3:+58702795 None:intergenic
TATTATAGAGTGGTTGCAAA+TGG 0.486102 5_3:-58701237 Msa0820990:three_prime_UTR
AGCAGTTCAGTTAACTCAAA+GGG 0.490217 5_3:-58704699 Msa0820990:CDS
AATATTCGTCCGACATCAAA+TGG 0.496654 5_3:+58703038 None:intergenic
TCTATTCATGTACTTCATGT+TGG 0.504883 5_3:-58702321 Msa0820990:CDS
ATCTTTAAAGGGGCGTGTGG+CGG 0.508676 5_3:-58705046 Msa0820990:CDS
ACATGAACTTCAAGCATTGA+GGG 0.508731 5_3:-58703818 Msa0820990:CDS
CACATTTATATGAACTTGAA+GGG 0.509106 5_3:-58703346 Msa0820990:CDS
GGACGTGGAACAATTAATGA+AGG 0.517482 5_3:-58704154 Msa0820990:CDS
AACTCATAATTAATTACAAG+TGG 0.520841 5_3:+58701449 None:intergenic
CTGAAGTCGAAGATAATGTC+TGG 0.522449 5_3:+58703777 None:intergenic
AATTTGCAAATAGGAGCCTA+AGG 0.525073 5_3:+58703316 None:intergenic
CTTGAAGGGAATGAAACCTT+AGG 0.529166 5_3:-58703332 Msa0820990:CDS
ATATTATTCAAGTTCAATGC+AGG 0.530369 5_3:-58702250 Msa0820990:intron
ACTACTGGTCCAATAGATCC+AGG 0.546915 5_3:-58702972 Msa0820990:intron
ACTTAGAGAAGCAGCATCGT+TGG 0.548424 5_3:-58705109 Msa0820990:CDS
AACATGAACTTCAAGCATTG+AGG 0.549149 5_3:-58703819 Msa0820990:CDS
TGCTAAGAAACTTGTTGATG+AGG 0.551185 5_3:-58704460 Msa0820990:CDS
GCGTGTGGCGGGAAGAAACA+AGG 0.553645 5_3:-58705034 Msa0820990:CDS
TTCAGTTAACTCAAAGGGAA+GGG 0.553933 5_3:-58704694 Msa0820990:CDS
ATAGGTTACATATTATAGAG+TGG 0.554651 5_3:-58701247 Msa0820990:three_prime_UTR
TAGTTGAAAGTATGATGTGC+TGG 0.559524 5_3:+58702991 None:intergenic
ACATTATCTTCGACTTCAGA+AGG 0.561300 5_3:-58703773 Msa0820990:CDS
TAGCAGTTCAGTTAACTCAA+AGG 0.564626 5_3:-58704700 Msa0820990:CDS
ATGCAGCCATCATGCTTGCA+AGG 0.568067 5_3:-58701955 Msa0820990:CDS
CCTTCAAGTTCATATAAATG+TGG 0.571227 5_3:+58703347 None:intergenic
GTGCAGAAATAGATAATGCT+AGG 0.572393 5_3:-58704422 Msa0820990:CDS
AGGGGAACTATTACAAGAGA+AGG 0.575891 5_3:-58704675 Msa0820990:CDS
AGTACATGAATAGATTCAGT+TGG 0.577590 5_3:+58702330 None:intergenic
ATTAATGAAGGAGGTTCAAG+AGG 0.588663 5_3:-58704142 Msa0820990:CDS
GTTCAGTTAACTCAAAGGGA+AGG 0.590453 5_3:-58704695 Msa0820990:CDS
TCAGTTAACTCAAAGGGAAG+GGG 0.595135 5_3:-58704693 Msa0820990:CDS
ATGAGGATCAAACTCTGCAA+AGG 0.596515 5_3:-58702294 Msa0820990:CDS
AAATCTCCTTGCAAGCATGA+TGG 0.600891 5_3:+58701949 None:intergenic
CAATATAACATAACAAGCCA+CGG 0.602549 5_3:+58701382 None:intergenic
ATTCACTTGAATCTTTAAAG+GGG 0.617778 5_3:-58705056 Msa0820990:CDS
AACAAGGACAAAGAAAGGAG+AGG 0.619273 5_3:-58703378 Msa0820990:CDS
ACTCATAATTAATTACAAGT+GGG 0.620306 5_3:+58701450 None:intergenic
TGGTGTCGTGTATCATCTGA+TGG 0.625922 5_3:-58703245 Msa0820990:CDS
TAGGTCAGCTGTTCAGAGAG+TGG 0.628287 5_3:-58704403 Msa0820990:CDS
TGAATCTTTAAAGGGGCGTG+TGG 0.628341 5_3:-58705049 Msa0820990:CDS
GCACCTGAACCATTTGATGT+CGG 0.631127 5_3:-58703047 Msa0820990:CDS
TAAAACTTATGTATAATACA+AGG 0.632880 5_3:+58701413 None:intergenic
AAGAAACAAGGATGATGTCG+AGG 0.633966 5_3:-58705022 Msa0820990:CDS
AATGCTGCATCAGCCAAGCA+AGG 0.639243 5_3:-58704106 Msa0820990:intron
TTGCACTTATCTATGGACAC+TGG 0.646537 5_3:-58701164 Msa0820990:three_prime_UTR
TCTAGTCAACTCACTCACAA+AGG 0.648601 5_3:+58701275 None:intergenic
TCTGGAGCATTATCAGAGCA+AGG 0.648849 5_3:+58703290 None:intergenic
TCGAGGCGGTGGAAATGCTG+CGG 0.651682 5_3:-58702050 Msa0820990:CDS
TGTCGAGGATGCTATTGCTA+TGG 0.654260 5_3:-58705007 Msa0820990:intron
GTAGTTGTAACACAAATGAG+TGG 0.656424 5_3:-58702363 Msa0820990:CDS
GTGCAATGAGAGTGAGACTG+AGG 0.657616 5_3:+58701181 None:intergenic
TTATCTTCGACTTCAGAAGG+AGG 0.660621 5_3:-58703770 Msa0820990:intron
ACTATTACAAGAGAAGGCAG+AGG 0.660927 5_3:-58704669 Msa0820990:CDS
CGTGGAACAATTAATGAAGG+AGG 0.670679 5_3:-58704151 Msa0820990:CDS
TGGTAATGATTCATATCTTG+TGG 0.672912 5_3:-58701353 Msa0820990:three_prime_UTR
TGGTTTGGGAACCTATGTAG+AGG 0.673790 5_3:-58702806 Msa0820990:CDS
TAGCTTTGTGGAGTTCGAGG+CGG 0.690196 5_3:-58702064 Msa0820990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATAAATATATGTTTATT+AGG + chr5_3:58701245-58701264 None:intergenic 10.0%
!!! TACATTTTTTTTTTTTTTGA+GGG + chr5_3:58702504-58702523 None:intergenic 10.0%
!!! TCAAAACTTTTTTAAAAAAT+TGG + chr5_3:58703571-58703590 None:intergenic 10.0%
!! AACATAAATATATGTTTATT+AGG + chr5_3:58701245-58701264 None:intergenic 10.0%
!!! TACATTTTTTTTTTTTTTGA+GGG + chr5_3:58702504-58702523 None:intergenic 10.0%
!!! TCAAAACTTTTTTAAAAAAT+TGG + chr5_3:58703571-58703590 None:intergenic 10.0%
!!! TTTGTTTGGATTTTTTTTTT+TGG - chr5_3:58701981-58702000 Msa0820990:CDS 15.0%
!!! CTACATTTTTTTTTTTTTTG+AGG + chr5_3:58702505-58702524 None:intergenic 15.0%
!! TGTTTATATTGAAACTATAA+AGG - chr5_3:58703290-58703309 Msa0820990:CDS 15.0%
!! TAAAACTTATGTATAATACA+AGG + chr5_3:58704764-58704783 None:intergenic 15.0%
!!! TTTGTTTGGATTTTTTTTTT+TGG - chr5_3:58701981-58702000 Msa0820990:CDS 15.0%
!!! CTACATTTTTTTTTTTTTTG+AGG + chr5_3:58702505-58702524 None:intergenic 15.0%
!! TGTTTATATTGAAACTATAA+AGG - chr5_3:58703290-58703309 Msa0820990:CDS 15.0%
!! TAAAACTTATGTATAATACA+AGG + chr5_3:58704764-58704783 None:intergenic 15.0%
!! TATATGTTTATTAGGAAGAA+AGG + chr5_3:58701237-58701256 None:intergenic 20.0%
!!! TGCATTAATGATTAATTTGA+TGG - chr5_3:58701906-58701925 Msa0820990:intron 20.0%
!! TTATATATCTAGACTAAAGA+CGG + chr5_3:58702119-58702138 None:intergenic 20.0%
!!! ACTGTTTGTTTTTTGTATTT+TGG - chr5_3:58702214-58702233 Msa0820990:intron 20.0%
!!! TATTCAGTTTTTTTTTCCAT+TGG + chr5_3:58702450-58702469 None:intergenic 20.0%
!!! TTTTTTTTTTGAGGGAAATA+TGG + chr5_3:58702496-58702515 None:intergenic 20.0%
!! TGTCATGTTAAAATATACTT+AGG - chr5_3:58702552-58702571 Msa0820990:intron 20.0%
!! GTCATGTTAAAATATACTTA+GGG - chr5_3:58702553-58702572 Msa0820990:intron 20.0%
!! TCATGTTAAAATATACTTAG+GGG - chr5_3:58702554-58702573 Msa0820990:intron 20.0%
!! TTTCAAATTGTTCAATTCAA+TGG - chr5_3:58702909-58702928 Msa0820990:intron 20.0%
!!! CATATAGATTTGTTAAAACA+AGG + chr5_3:58703633-58703652 None:intergenic 20.0%
!!! CTTGTTTTAACAAATCTATA+TGG - chr5_3:58703631-58703650 Msa0820990:intron 20.0%
!! TGAACTTGAATAATATTCTT+TGG + chr5_3:58703920-58703939 None:intergenic 20.0%
!!! ATATTCATTATTTGTTATGC+AGG + chr5_3:58704348-58704367 None:intergenic 20.0%
!! CTTCAATTATCAACTATTAA+TGG + chr5_3:58704396-58704415 None:intergenic 20.0%
!!! ATTGATTTTCATTGCTATAA+TGG - chr5_3:58704626-58704645 Msa0820990:intron 20.0%
!! ACTCATAATTAATTACAAGT+GGG + chr5_3:58704727-58704746 None:intergenic 20.0%
!! AACTCATAATTAATTACAAG+TGG + chr5_3:58704728-58704747 None:intergenic 20.0%
!! TATATGTTTATTAGGAAGAA+AGG + chr5_3:58701237-58701256 None:intergenic 20.0%
!!! TGCATTAATGATTAATTTGA+TGG - chr5_3:58701906-58701925 Msa0820990:intron 20.0%
!! TTATATATCTAGACTAAAGA+CGG + chr5_3:58702119-58702138 None:intergenic 20.0%
!!! ACTGTTTGTTTTTTGTATTT+TGG - chr5_3:58702214-58702233 Msa0820990:intron 20.0%
!!! TATTCAGTTTTTTTTTCCAT+TGG + chr5_3:58702450-58702469 None:intergenic 20.0%
!!! TTTTTTTTTTGAGGGAAATA+TGG + chr5_3:58702496-58702515 None:intergenic 20.0%
!! TGTCATGTTAAAATATACTT+AGG - chr5_3:58702552-58702571 Msa0820990:intron 20.0%
!! GTCATGTTAAAATATACTTA+GGG - chr5_3:58702553-58702572 Msa0820990:intron 20.0%
!! TCATGTTAAAATATACTTAG+GGG - chr5_3:58702554-58702573 Msa0820990:intron 20.0%
!! TTTCAAATTGTTCAATTCAA+TGG - chr5_3:58702909-58702928 Msa0820990:intron 20.0%
!!! CATATAGATTTGTTAAAACA+AGG + chr5_3:58703633-58703652 None:intergenic 20.0%
!!! CTTGTTTTAACAAATCTATA+TGG - chr5_3:58703631-58703650 Msa0820990:intron 20.0%
!! TGAACTTGAATAATATTCTT+TGG + chr5_3:58703920-58703939 None:intergenic 20.0%
!!! ATATTCATTATTTGTTATGC+AGG + chr5_3:58704348-58704367 None:intergenic 20.0%
!! CTTCAATTATCAACTATTAA+TGG + chr5_3:58704396-58704415 None:intergenic 20.0%
!!! ATTGATTTTCATTGCTATAA+TGG - chr5_3:58704626-58704645 Msa0820990:intron 20.0%
!! ACTCATAATTAATTACAAGT+GGG + chr5_3:58704727-58704746 None:intergenic 20.0%
!! AACTCATAATTAATTACAAG+TGG + chr5_3:58704728-58704747 None:intergenic 20.0%
! AGATTCACTTGAATCTTTAA+AGG - chr5_3:58701116-58701135 Msa0820990:three_prime_UTR 25.0%
! GATTCACTTGAATCTTTAAA+GGG - chr5_3:58701117-58701136 Msa0820990:three_prime_UTR 25.0%
!! ATTCACTTGAATCTTTAAAG+GGG - chr5_3:58701118-58701137 Msa0820990:three_prime_UTR 25.0%
!!! AGTTCTTTTGGAGATAAAAT+AGG - chr5_3:58701192-58701211 Msa0820990:three_prime_UTR 25.0%
! AATTTCTTTAAGCACATAAC+TGG + chr5_3:58701271-58701290 None:intergenic 25.0%
!! TTTTATTATTTGCACTCTTC+AGG - chr5_3:58701442-58701461 Msa0820990:three_prime_UTR 25.0%
!! ATTTGACATGTTTTATCACA+TGG + chr5_3:58701872-58701891 None:intergenic 25.0%
!! GCAACTGAATAATTTTTGTT+TGG - chr5_3:58701967-58701986 Msa0820990:CDS 25.0%
!!! ATTTTTTTTTTTGGCTTTGC+TGG - chr5_3:58701990-58702009 Msa0820990:CDS 25.0%
!!! TTTTTTTTTTTGGCTTTGCT+GGG - chr5_3:58701991-58702010 Msa0820990:CDS 25.0%
!! AACTTCATCAAGTTATTTCA+AGG - chr5_3:58702286-58702305 Msa0820990:CDS 25.0%
!!! TTGATTGTTGATTGATTTGT+AGG - chr5_3:58702320-58702339 Msa0820990:CDS 25.0%
! CACATTTATATGAACTTGAA+GGG - chr5_3:58702828-58702847 Msa0820990:intron 25.0%
! ATTGAACAATTTGAAAGATC+TGG + chr5_3:58702905-58702924 None:intergenic 25.0%
!!! ACCTGAAATAAGTTCTTTTT+TGG + chr5_3:58702957-58702976 None:intergenic 25.0%
!! ATATTATTCAAGTTCAATGC+AGG - chr5_3:58703924-58703943 Msa0820990:intron 25.0%
!! TTCAAATTGTCAATGCTTTT+TGG - chr5_3:58703950-58703969 Msa0820990:intron 25.0%
! ACTATTAATGGAAAAGTTAG+CGG + chr5_3:58704384-58704403 None:intergenic 25.0%
! TCAATAAAGAACAGACTAAA+GGG + chr5_3:58704611-58704630 None:intergenic 25.0%
! ATCAATAAAGAACAGACTAA+AGG + chr5_3:58704612-58704631 None:intergenic 25.0%
!! GGGAAATAAGTAAGATTTTA+AGG + chr5_3:58704707-58704726 None:intergenic 25.0%
!!! AATTTTGTTTGATCAACACT+TGG - chr5_3:58704861-58704880 Msa0820990:intron 25.0%
!!! ATTTTGTTTGATCAACACTT+GGG - chr5_3:58704862-58704881 Msa0820990:intron 25.0%
! ATAGGTTACATATTATAGAG+TGG - chr5_3:58704927-58704946 Msa0820990:intron 25.0%
! AAAAACACAGAAATTTCTCA+AGG + chr5_3:58705036-58705055 None:intergenic 25.0%
!!! TGTTTTTTCACAAGAAAACT+TGG - chr5_3:58705049-58705068 Msa0820990:CDS 25.0%
! AGATTCACTTGAATCTTTAA+AGG - chr5_3:58701116-58701135 Msa0820990:three_prime_UTR 25.0%
! GATTCACTTGAATCTTTAAA+GGG - chr5_3:58701117-58701136 Msa0820990:three_prime_UTR 25.0%
!! ATTCACTTGAATCTTTAAAG+GGG - chr5_3:58701118-58701137 Msa0820990:three_prime_UTR 25.0%
!!! AGTTCTTTTGGAGATAAAAT+AGG - chr5_3:58701192-58701211 Msa0820990:three_prime_UTR 25.0%
! AATTTCTTTAAGCACATAAC+TGG + chr5_3:58701271-58701290 None:intergenic 25.0%
!! TTTTATTATTTGCACTCTTC+AGG - chr5_3:58701442-58701461 Msa0820990:three_prime_UTR 25.0%
!! ATTTGACATGTTTTATCACA+TGG + chr5_3:58701872-58701891 None:intergenic 25.0%
!! GCAACTGAATAATTTTTGTT+TGG - chr5_3:58701967-58701986 Msa0820990:CDS 25.0%
!!! ATTTTTTTTTTTGGCTTTGC+TGG - chr5_3:58701990-58702009 Msa0820990:CDS 25.0%
!!! TTTTTTTTTTTGGCTTTGCT+GGG - chr5_3:58701991-58702010 Msa0820990:CDS 25.0%
!! AACTTCATCAAGTTATTTCA+AGG - chr5_3:58702286-58702305 Msa0820990:CDS 25.0%
!!! TTGATTGTTGATTGATTTGT+AGG - chr5_3:58702320-58702339 Msa0820990:CDS 25.0%
! CACATTTATATGAACTTGAA+GGG - chr5_3:58702828-58702847 Msa0820990:intron 25.0%
! ATTGAACAATTTGAAAGATC+TGG + chr5_3:58702905-58702924 None:intergenic 25.0%
!!! ACCTGAAATAAGTTCTTTTT+TGG + chr5_3:58702957-58702976 None:intergenic 25.0%
!! ATATTATTCAAGTTCAATGC+AGG - chr5_3:58703924-58703943 Msa0820990:intron 25.0%
!! TTCAAATTGTCAATGCTTTT+TGG - chr5_3:58703950-58703969 Msa0820990:intron 25.0%
! ACTATTAATGGAAAAGTTAG+CGG + chr5_3:58704384-58704403 None:intergenic 25.0%
! TCAATAAAGAACAGACTAAA+GGG + chr5_3:58704611-58704630 None:intergenic 25.0%
! ATCAATAAAGAACAGACTAA+AGG + chr5_3:58704612-58704631 None:intergenic 25.0%
!! GGGAAATAAGTAAGATTTTA+AGG + chr5_3:58704707-58704726 None:intergenic 25.0%
!!! AATTTTGTTTGATCAACACT+TGG - chr5_3:58704861-58704880 Msa0820990:intron 25.0%
!!! ATTTTGTTTGATCAACACTT+GGG - chr5_3:58704862-58704881 Msa0820990:intron 25.0%
! ATAGGTTACATATTATAGAG+TGG - chr5_3:58704927-58704946 Msa0820990:intron 25.0%
! AAAAACACAGAAATTTCTCA+AGG + chr5_3:58705036-58705055 None:intergenic 25.0%
!!! TGTTTTTTCACAAGAAAACT+TGG - chr5_3:58705049-58705068 Msa0820990:CDS 25.0%
!! TCTTTTGGAGATAAAATAGG+AGG - chr5_3:58701195-58701214 Msa0820990:three_prime_UTR 30.0%
TAATTACAATGTTGCCTTCA+CGG + chr5_3:58701294-58701313 None:intergenic 30.0%
CTTGTACTCTATGAAAATCA+TGG - chr5_3:58701324-58701343 Msa0820990:three_prime_UTR 30.0%
ATGCATAGTGAATAAACTTG+AGG - chr5_3:58701380-58701399 Msa0820990:three_prime_UTR 30.0%
ATAGTGAATAAACTTGAGGA+TGG - chr5_3:58701384-58701403 Msa0820990:three_prime_UTR 30.0%
! ACTGGCAAATTTTCTTAAAC+AGG - chr5_3:58701535-58701554 Msa0820990:intron 30.0%
TGCTAACTTATGTTACCTTA+TGG - chr5_3:58701561-58701580 Msa0820990:intron 30.0%
TTACCTTATGGTATGCTAAA+AGG - chr5_3:58701573-58701592 Msa0820990:intron 30.0%
! AATCCTTTTAGCATACCATA+AGG + chr5_3:58701579-58701598 None:intergenic 30.0%
TATACTCTCAGCATATGTAA+CGG + chr5_3:58701670-58701689 None:intergenic 30.0%
!!! TTTTTTTTTTGGCTTTGCTG+GGG - chr5_3:58701992-58702011 Msa0820990:CDS 30.0%
TATTTCGTATATACCTTGCT+TGG + chr5_3:58702084-58702103 None:intergenic 30.0%
AAATATCGAGTAACTCATCA+TGG + chr5_3:58702618-58702637 None:intergenic 30.0%
GATAAATTTCTCCGATTAAG+TGG - chr5_3:58702698-58702717 Msa0820990:intron 30.0%
!! AAAGCATTGTGAAGGATAAA+CGG + chr5_3:58702770-58702789 None:intergenic 30.0%
!! TTATCTGAAAAGCATTGTGA+AGG + chr5_3:58702778-58702797 None:intergenic 30.0%
! ACAATGCTTTTCAGATAACA+AGG - chr5_3:58702780-58702799 Msa0820990:CDS 30.0%
! CCTTCAAGTTCATATAAATG+TGG + chr5_3:58702830-58702849 None:intergenic 30.0%
CCACATTTATATGAACTTGA+AGG - chr5_3:58702827-58702846 Msa0820990:intron 30.0%
GCCAAAAAAGAACTTATTTC+AGG - chr5_3:58702953-58702972 Msa0820990:intron 30.0%
TATGTTGAGCATGAAAGTTA+TGG - chr5_3:58703031-58703050 Msa0820990:CDS 30.0%
! TAATGCACTTTTCTCTTTTC+AGG - chr5_3:58703085-58703104 Msa0820990:intron 30.0%
CGTAACTTCTAAATCAAATG+TGG + chr5_3:58703247-58703266 None:intergenic 30.0%
ATTGATGCTCATATACTACT+AGG + chr5_3:58703466-58703485 None:intergenic 30.0%
!! CGTCCATTTTATTTCTCATT+TGG - chr5_3:58703545-58703564 Msa0820990:intron 30.0%
TGGCCAAATGAGAAATAAAA+TGG + chr5_3:58703551-58703570 None:intergenic 30.0%
CTACCTGAAAATATCAAACA+CGG + chr5_3:58703795-58703814 None:intergenic 30.0%
AGTACATGAATAGATTCAGT+TGG + chr5_3:58703847-58703866 None:intergenic 30.0%
TCTATTCATGTACTTCATGT+TGG - chr5_3:58703853-58703872 Msa0820990:intron 30.0%
TACTTCATGTTGGAAAAATG+AGG - chr5_3:58703863-58703882 Msa0820990:intron 30.0%
!!! TCTTGTTTTCTTTAGCTTTG+TGG - chr5_3:58704098-58704117 Msa0820990:intron 30.0%
!! ACAAAAGAAAGTCCTTGTTT+TGG + chr5_3:58704170-58704189 None:intergenic 30.0%
! ACAAGGACTTTCTTTTGTAT+TGG - chr5_3:58704172-58704191 Msa0820990:intron 30.0%
TTCATTTACGTTATAGTTGC+TGG - chr5_3:58704569-58704588 Msa0820990:intron 30.0%
CAATATAACATAACAAGCCA+CGG + chr5_3:58704795-58704814 None:intergenic 30.0%
GTTATGTTATATTGGTAAGC+TGG - chr5_3:58704801-58704820 Msa0820990:intron 30.0%
! TGGTAATGATTCATATCTTG+TGG - chr5_3:58704821-58704840 Msa0820990:intron 30.0%
! TGAGTTGACTAGAGATTTAT+AGG - chr5_3:58704909-58704928 Msa0820990:intron 30.0%
TATTATAGAGTGGTTGCAAA+TGG - chr5_3:58704937-58704956 Msa0820990:intron 30.0%
!! TCTTTTGGAGATAAAATAGG+AGG - chr5_3:58701195-58701214 Msa0820990:three_prime_UTR 30.0%
TAATTACAATGTTGCCTTCA+CGG + chr5_3:58701294-58701313 None:intergenic 30.0%
CTTGTACTCTATGAAAATCA+TGG - chr5_3:58701324-58701343 Msa0820990:three_prime_UTR 30.0%
ATGCATAGTGAATAAACTTG+AGG - chr5_3:58701380-58701399 Msa0820990:three_prime_UTR 30.0%
ATAGTGAATAAACTTGAGGA+TGG - chr5_3:58701384-58701403 Msa0820990:three_prime_UTR 30.0%
! ACTGGCAAATTTTCTTAAAC+AGG - chr5_3:58701535-58701554 Msa0820990:intron 30.0%
TGCTAACTTATGTTACCTTA+TGG - chr5_3:58701561-58701580 Msa0820990:intron 30.0%
TTACCTTATGGTATGCTAAA+AGG - chr5_3:58701573-58701592 Msa0820990:intron 30.0%
! AATCCTTTTAGCATACCATA+AGG + chr5_3:58701579-58701598 None:intergenic 30.0%
TATACTCTCAGCATATGTAA+CGG + chr5_3:58701670-58701689 None:intergenic 30.0%
!!! TTTTTTTTTTGGCTTTGCTG+GGG - chr5_3:58701992-58702011 Msa0820990:CDS 30.0%
TATTTCGTATATACCTTGCT+TGG + chr5_3:58702084-58702103 None:intergenic 30.0%
AAATATCGAGTAACTCATCA+TGG + chr5_3:58702618-58702637 None:intergenic 30.0%
GATAAATTTCTCCGATTAAG+TGG - chr5_3:58702698-58702717 Msa0820990:intron 30.0%
!! AAAGCATTGTGAAGGATAAA+CGG + chr5_3:58702770-58702789 None:intergenic 30.0%
!! TTATCTGAAAAGCATTGTGA+AGG + chr5_3:58702778-58702797 None:intergenic 30.0%
! ACAATGCTTTTCAGATAACA+AGG - chr5_3:58702780-58702799 Msa0820990:CDS 30.0%
! CCTTCAAGTTCATATAAATG+TGG + chr5_3:58702830-58702849 None:intergenic 30.0%
CCACATTTATATGAACTTGA+AGG - chr5_3:58702827-58702846 Msa0820990:intron 30.0%
GCCAAAAAAGAACTTATTTC+AGG - chr5_3:58702953-58702972 Msa0820990:intron 30.0%
TATGTTGAGCATGAAAGTTA+TGG - chr5_3:58703031-58703050 Msa0820990:CDS 30.0%
! TAATGCACTTTTCTCTTTTC+AGG - chr5_3:58703085-58703104 Msa0820990:intron 30.0%
CGTAACTTCTAAATCAAATG+TGG + chr5_3:58703247-58703266 None:intergenic 30.0%
ATTGATGCTCATATACTACT+AGG + chr5_3:58703466-58703485 None:intergenic 30.0%
!! CGTCCATTTTATTTCTCATT+TGG - chr5_3:58703545-58703564 Msa0820990:intron 30.0%
TGGCCAAATGAGAAATAAAA+TGG + chr5_3:58703551-58703570 None:intergenic 30.0%
CTACCTGAAAATATCAAACA+CGG + chr5_3:58703795-58703814 None:intergenic 30.0%
AGTACATGAATAGATTCAGT+TGG + chr5_3:58703847-58703866 None:intergenic 30.0%
TCTATTCATGTACTTCATGT+TGG - chr5_3:58703853-58703872 Msa0820990:intron 30.0%
TACTTCATGTTGGAAAAATG+AGG - chr5_3:58703863-58703882 Msa0820990:intron 30.0%
!!! TCTTGTTTTCTTTAGCTTTG+TGG - chr5_3:58704098-58704117 Msa0820990:intron 30.0%
!! ACAAAAGAAAGTCCTTGTTT+TGG + chr5_3:58704170-58704189 None:intergenic 30.0%
! ACAAGGACTTTCTTTTGTAT+TGG - chr5_3:58704172-58704191 Msa0820990:intron 30.0%
TTCATTTACGTTATAGTTGC+TGG - chr5_3:58704569-58704588 Msa0820990:intron 30.0%
CAATATAACATAACAAGCCA+CGG + chr5_3:58704795-58704814 None:intergenic 30.0%
GTTATGTTATATTGGTAAGC+TGG - chr5_3:58704801-58704820 Msa0820990:intron 30.0%
! TGGTAATGATTCATATCTTG+TGG - chr5_3:58704821-58704840 Msa0820990:intron 30.0%
! TGAGTTGACTAGAGATTTAT+AGG - chr5_3:58704909-58704928 Msa0820990:intron 30.0%
TATTATAGAGTGGTTGCAAA+TGG - chr5_3:58704937-58704956 Msa0820990:intron 30.0%
! ATTGCTATGGTGAGTTCTTT+TGG - chr5_3:58701180-58701199 Msa0820990:three_prime_UTR 35.0%
TGCTTAAAGAAATTCCGTGA+AGG - chr5_3:58701277-58701296 Msa0820990:three_prime_UTR 35.0%
TAGCAGTTCAGTTAACTCAA+AGG - chr5_3:58701474-58701493 Msa0820990:three_prime_UTR 35.0%
AGCAGTTCAGTTAACTCAAA+GGG - chr5_3:58701475-58701494 Msa0820990:three_prime_UTR 35.0%
TTCAGTTAACTCAAAGGGAA+GGG - chr5_3:58701480-58701499 Msa0820990:three_prime_UTR 35.0%
! GAGAGTATAGATTCATTTGC+AGG - chr5_3:58701681-58701700 Msa0820990:intron 35.0%
!! TGCTAAGAAACTTGTTGATG+AGG - chr5_3:58701714-58701733 Msa0820990:intron 35.0%
GTGCAGAAATAGATAATGCT+AGG - chr5_3:58701752-58701771 Msa0820990:intron 35.0%
AAAAATACAAACCTGCTTCC+CGG + chr5_3:58701836-58701855 None:intergenic 35.0%
ATTAATGAAGGAGGTTCAAG+AGG - chr5_3:58702032-58702051 Msa0820990:CDS 35.0%
!! GTTGATTGATTTGTAGGTCA+TGG - chr5_3:58702326-58702345 Msa0820990:CDS 35.0%
! TGATTTGTAGGTCATGGATA+TGG - chr5_3:58702332-58702351 Msa0820990:CDS 35.0%
! AACATGAACTTCAAGCATTG+AGG - chr5_3:58702355-58702374 Msa0820990:CDS 35.0%
!! ACATGAACTTCAAGCATTGA+GGG - chr5_3:58702356-58702375 Msa0820990:CDS 35.0%
ACATTATCTTCGACTTCAGA+AGG - chr5_3:58702401-58702420 Msa0820990:intron 35.0%
AGTCCATATTCCTATCATTG+AGG - chr5_3:58702526-58702545 Msa0820990:intron 35.0%
TCTTTGAGCAATGTCTTGAA+CGG - chr5_3:58702578-58702597 Msa0820990:intron 35.0%
TCACTCACGACAATAAAAAG+TGG + chr5_3:58702676-58702695 None:intergenic 35.0%
ATGTAACTGCTCCACTTAAT+CGG + chr5_3:58702712-58702731 None:intergenic 35.0%
CAGATAACAAGGACAAAGAA+AGG - chr5_3:58702791-58702810 Msa0820990:CDS 35.0%
AATTTGCAAATAGGAGCCTA+AGG + chr5_3:58702861-58702880 None:intergenic 35.0%
GCAAGGTTGAATTTGCAAAT+AGG + chr5_3:58702870-58702889 None:intergenic 35.0%
CAGAAAATGTTGTCTTCAAC+AGG + chr5_3:58703002-58703021 None:intergenic 35.0%
AATATTCGTCCGACATCAAA+TGG + chr5_3:58703139-58703158 None:intergenic 35.0%
! TAGTTGAAAGTATGATGTGC+TGG + chr5_3:58703186-58703205 None:intergenic 35.0%
CACATCATACTTTCAACTAC+TGG - chr5_3:58703187-58703206 Msa0820990:intron 35.0%
ATGCTCATATACTACTAGGA+GGG + chr5_3:58703462-58703481 None:intergenic 35.0%
! ATGCCGTGTTTGATATTTTC+AGG - chr5_3:58703789-58703808 Msa0820990:CDS 35.0%
GTAGTTGTAACACAAATGAG+TGG - chr5_3:58703811-58703830 Msa0820990:CDS 35.0%
!!! CATTGATTTTCTCATCTGAC+TGG + chr5_3:58704309-58704328 None:intergenic 35.0%
!! TAAGTTTTAACAGTGAACCG+TGG - chr5_3:58704775-58704794 Msa0820990:intron 35.0%
!! CGTGGCTTGTTATGTTATAT+TGG - chr5_3:58704793-58704812 Msa0820990:intron 35.0%
ACTCTCATTGCACTTATCTA+TGG - chr5_3:58705003-58705022 Msa0820990:intron 35.0%
! ATTGCTATGGTGAGTTCTTT+TGG - chr5_3:58701180-58701199 Msa0820990:three_prime_UTR 35.0%
TGCTTAAAGAAATTCCGTGA+AGG - chr5_3:58701277-58701296 Msa0820990:three_prime_UTR 35.0%
TAGCAGTTCAGTTAACTCAA+AGG - chr5_3:58701474-58701493 Msa0820990:three_prime_UTR 35.0%
AGCAGTTCAGTTAACTCAAA+GGG - chr5_3:58701475-58701494 Msa0820990:three_prime_UTR 35.0%
TTCAGTTAACTCAAAGGGAA+GGG - chr5_3:58701480-58701499 Msa0820990:three_prime_UTR 35.0%
! GAGAGTATAGATTCATTTGC+AGG - chr5_3:58701681-58701700 Msa0820990:intron 35.0%
!! TGCTAAGAAACTTGTTGATG+AGG - chr5_3:58701714-58701733 Msa0820990:intron 35.0%
GTGCAGAAATAGATAATGCT+AGG - chr5_3:58701752-58701771 Msa0820990:intron 35.0%
AAAAATACAAACCTGCTTCC+CGG + chr5_3:58701836-58701855 None:intergenic 35.0%
ATTAATGAAGGAGGTTCAAG+AGG - chr5_3:58702032-58702051 Msa0820990:CDS 35.0%
!! GTTGATTGATTTGTAGGTCA+TGG - chr5_3:58702326-58702345 Msa0820990:CDS 35.0%
! TGATTTGTAGGTCATGGATA+TGG - chr5_3:58702332-58702351 Msa0820990:CDS 35.0%
! AACATGAACTTCAAGCATTG+AGG - chr5_3:58702355-58702374 Msa0820990:CDS 35.0%
!! ACATGAACTTCAAGCATTGA+GGG - chr5_3:58702356-58702375 Msa0820990:CDS 35.0%
ACATTATCTTCGACTTCAGA+AGG - chr5_3:58702401-58702420 Msa0820990:intron 35.0%
AGTCCATATTCCTATCATTG+AGG - chr5_3:58702526-58702545 Msa0820990:intron 35.0%
TCTTTGAGCAATGTCTTGAA+CGG - chr5_3:58702578-58702597 Msa0820990:intron 35.0%
TCACTCACGACAATAAAAAG+TGG + chr5_3:58702676-58702695 None:intergenic 35.0%
ATGTAACTGCTCCACTTAAT+CGG + chr5_3:58702712-58702731 None:intergenic 35.0%
CAGATAACAAGGACAAAGAA+AGG - chr5_3:58702791-58702810 Msa0820990:CDS 35.0%
AATTTGCAAATAGGAGCCTA+AGG + chr5_3:58702861-58702880 None:intergenic 35.0%
GCAAGGTTGAATTTGCAAAT+AGG + chr5_3:58702870-58702889 None:intergenic 35.0%
CAGAAAATGTTGTCTTCAAC+AGG + chr5_3:58703002-58703021 None:intergenic 35.0%
AATATTCGTCCGACATCAAA+TGG + chr5_3:58703139-58703158 None:intergenic 35.0%
! TAGTTGAAAGTATGATGTGC+TGG + chr5_3:58703186-58703205 None:intergenic 35.0%
CACATCATACTTTCAACTAC+TGG - chr5_3:58703187-58703206 Msa0820990:intron 35.0%
ATGCTCATATACTACTAGGA+GGG + chr5_3:58703462-58703481 None:intergenic 35.0%
! ATGCCGTGTTTGATATTTTC+AGG - chr5_3:58703789-58703808 Msa0820990:CDS 35.0%
GTAGTTGTAACACAAATGAG+TGG - chr5_3:58703811-58703830 Msa0820990:CDS 35.0%
!!! CATTGATTTTCTCATCTGAC+TGG + chr5_3:58704309-58704328 None:intergenic 35.0%
!! TAAGTTTTAACAGTGAACCG+TGG - chr5_3:58704775-58704794 Msa0820990:intron 35.0%
!! CGTGGCTTGTTATGTTATAT+TGG - chr5_3:58704793-58704812 Msa0820990:intron 35.0%
ACTCTCATTGCACTTATCTA+TGG - chr5_3:58705003-58705022 Msa0820990:intron 35.0%
AAGAAACAAGGATGATGTCG+AGG - chr5_3:58701152-58701171 Msa0820990:three_prime_UTR 40.0%
GTTCAGTTAACTCAAAGGGA+AGG - chr5_3:58701479-58701498 Msa0820990:three_prime_UTR 40.0%
TCAGTTAACTCAAAGGGAAG+GGG - chr5_3:58701481-58701500 Msa0820990:exon 40.0%
AGGGGAACTATTACAAGAGA+AGG - chr5_3:58701499-58701518 Msa0820990:exon 40.0%
ACTATTACAAGAGAAGGCAG+AGG - chr5_3:58701505-58701524 Msa0820990:CDS 40.0%
GAAGGCAGAGGTTAAAAAAC+TGG - chr5_3:58701517-58701536 Msa0820990:CDS 40.0%
GGACGTGGAACAATTAATGA+AGG - chr5_3:58702020-58702039 Msa0820990:CDS 40.0%
CGTGGAACAATTAATGAAGG+AGG - chr5_3:58702023-58702042 Msa0820990:CDS 40.0%
TTCCTCCATAGCGTAGTTAA+TGG - chr5_3:58702187-58702206 Msa0820990:intron 40.0%
TTCAGCCATTAACTACGCTA+TGG + chr5_3:58702195-58702214 None:intergenic 40.0%
GAAGAAATCCAATTCCACGT+GGG + chr5_3:58702255-58702274 None:intergenic 40.0%
AGAAGAAATCCAATTCCACG+TGG + chr5_3:58702256-58702275 None:intergenic 40.0%
CTGAAGTCGAAGATAATGTC+TGG + chr5_3:58702400-58702419 None:intergenic 40.0%
TTATCTTCGACTTCAGAAGG+AGG - chr5_3:58702404-58702423 Msa0820990:intron 40.0%
CCATTGGCATGAGATTATAC+AGG + chr5_3:58702434-58702453 None:intergenic 40.0%
CCTGTATAATCTCATGCCAA+TGG - chr5_3:58702431-58702450 Msa0820990:intron 40.0%
CTGCCTCAATGATAGGAATA+TGG + chr5_3:58702532-58702551 None:intergenic 40.0%
CAATGTCTTGAACGGTAAGA+TGG - chr5_3:58702586-58702605 Msa0820990:intron 40.0%
AACAAGGACAAAGAAAGGAG+AGG - chr5_3:58702796-58702815 Msa0820990:CDS 40.0%
CTTGAAGGGAATGAAACCTT+AGG - chr5_3:58702842-58702861 Msa0820990:intron 40.0%
GAAACGATACCTGGATCTAT+TGG + chr5_3:58703214-58703233 None:intergenic 40.0%
TGACTCAATGAAACGATACC+TGG + chr5_3:58703223-58703242 None:intergenic 40.0%
!! AATTGCTTTTATGCAGCTGC+TGG - chr5_3:58703348-58703367 Msa0820990:CDS 40.0%
!!! TTTTATGCAGCTGCTGGTTT+GGG - chr5_3:58703354-58703373 Msa0820990:CDS 40.0%
GATGCTCATATACTACTAGG+AGG + chr5_3:58703463-58703482 None:intergenic 40.0%
ATGAGGATCAAACTCTGCAA+AGG - chr5_3:58703880-58703899 Msa0820990:intron 40.0%
!!! CTATTTTGGCAGCCAAAACA+AGG - chr5_3:58704155-58704174 Msa0820990:CDS 40.0%
! CTTTTGAATCAGAGCGAGAA+AGG - chr5_3:58704195-58704214 Msa0820990:intron 40.0%
AAATCTCCTTGCAAGCATGA+TGG + chr5_3:58704228-58704247 None:intergenic 40.0%
TGTAAACACATGTGTCACGT+CGG - chr5_3:58704502-58704521 Msa0820990:intron 40.0%
TCTAGTCAACTCACTCACAA+AGG + chr5_3:58704902-58704921 None:intergenic 40.0%
TTGCACTTATCTATGGACAC+TGG - chr5_3:58705010-58705029 Msa0820990:CDS 40.0%
AAGAAACAAGGATGATGTCG+AGG - chr5_3:58701152-58701171 Msa0820990:three_prime_UTR 40.0%
GTTCAGTTAACTCAAAGGGA+AGG - chr5_3:58701479-58701498 Msa0820990:three_prime_UTR 40.0%
TCAGTTAACTCAAAGGGAAG+GGG - chr5_3:58701481-58701500 Msa0820990:exon 40.0%
AGGGGAACTATTACAAGAGA+AGG - chr5_3:58701499-58701518 Msa0820990:exon 40.0%
ACTATTACAAGAGAAGGCAG+AGG - chr5_3:58701505-58701524 Msa0820990:CDS 40.0%
GAAGGCAGAGGTTAAAAAAC+TGG - chr5_3:58701517-58701536 Msa0820990:CDS 40.0%
GGACGTGGAACAATTAATGA+AGG - chr5_3:58702020-58702039 Msa0820990:CDS 40.0%
CGTGGAACAATTAATGAAGG+AGG - chr5_3:58702023-58702042 Msa0820990:CDS 40.0%
TTCCTCCATAGCGTAGTTAA+TGG - chr5_3:58702187-58702206 Msa0820990:intron 40.0%
TTCAGCCATTAACTACGCTA+TGG + chr5_3:58702195-58702214 None:intergenic 40.0%
GAAGAAATCCAATTCCACGT+GGG + chr5_3:58702255-58702274 None:intergenic 40.0%
AGAAGAAATCCAATTCCACG+TGG + chr5_3:58702256-58702275 None:intergenic 40.0%
CTGAAGTCGAAGATAATGTC+TGG + chr5_3:58702400-58702419 None:intergenic 40.0%
TTATCTTCGACTTCAGAAGG+AGG - chr5_3:58702404-58702423 Msa0820990:intron 40.0%
CCATTGGCATGAGATTATAC+AGG + chr5_3:58702434-58702453 None:intergenic 40.0%
CCTGTATAATCTCATGCCAA+TGG - chr5_3:58702431-58702450 Msa0820990:intron 40.0%
CTGCCTCAATGATAGGAATA+TGG + chr5_3:58702532-58702551 None:intergenic 40.0%
CAATGTCTTGAACGGTAAGA+TGG - chr5_3:58702586-58702605 Msa0820990:intron 40.0%
AACAAGGACAAAGAAAGGAG+AGG - chr5_3:58702796-58702815 Msa0820990:CDS 40.0%
CTTGAAGGGAATGAAACCTT+AGG - chr5_3:58702842-58702861 Msa0820990:intron 40.0%
GAAACGATACCTGGATCTAT+TGG + chr5_3:58703214-58703233 None:intergenic 40.0%
TGACTCAATGAAACGATACC+TGG + chr5_3:58703223-58703242 None:intergenic 40.0%
!! AATTGCTTTTATGCAGCTGC+TGG - chr5_3:58703348-58703367 Msa0820990:CDS 40.0%
!!! TTTTATGCAGCTGCTGGTTT+GGG - chr5_3:58703354-58703373 Msa0820990:CDS 40.0%
GATGCTCATATACTACTAGG+AGG + chr5_3:58703463-58703482 None:intergenic 40.0%
ATGAGGATCAAACTCTGCAA+AGG - chr5_3:58703880-58703899 Msa0820990:intron 40.0%
!!! CTATTTTGGCAGCCAAAACA+AGG - chr5_3:58704155-58704174 Msa0820990:CDS 40.0%
! CTTTTGAATCAGAGCGAGAA+AGG - chr5_3:58704195-58704214 Msa0820990:intron 40.0%
AAATCTCCTTGCAAGCATGA+TGG + chr5_3:58704228-58704247 None:intergenic 40.0%
TGTAAACACATGTGTCACGT+CGG - chr5_3:58704502-58704521 Msa0820990:intron 40.0%
TCTAGTCAACTCACTCACAA+AGG + chr5_3:58704902-58704921 None:intergenic 40.0%
TTGCACTTATCTATGGACAC+TGG - chr5_3:58705010-58705029 Msa0820990:CDS 40.0%
ACTTAGAGAAGCAGCATCGT+TGG - chr5_3:58701065-58701084 Msa0820990:intron 45.0%
! TGAATCTTTAAAGGGGCGTG+TGG - chr5_3:58701125-58701144 Msa0820990:three_prime_UTR 45.0%
TGTCGAGGATGCTATTGCTA+TGG - chr5_3:58701167-58701186 Msa0820990:three_prime_UTR 45.0%
GAGAGAATGTCTCAAGCTTC+CGG - chr5_3:58701814-58701833 Msa0820990:intron 45.0%
AGAGAATGTCTCAAGCTTCC+GGG - chr5_3:58701815-58701834 Msa0820990:intron 45.0%
!!! TTTGGCTTTGCTGGGGTTTT+AGG - chr5_3:58701999-58702018 Msa0820990:CDS 45.0%
AGCCATTAACTACGCTATGG+AGG + chr5_3:58702192-58702211 None:intergenic 45.0%
ATGTCTTTCCCACGTGGAAT+TGG - chr5_3:58702244-58702263 Msa0820990:intron 45.0%
CATGACACTGCCTCAATGAT+AGG + chr5_3:58702539-58702558 None:intergenic 45.0%
! TCTGGAGCATTATCAGAGCA+AGG + chr5_3:58702887-58702906 None:intergenic 45.0%
!! TGGTGTCGTGTATCATCTGA+TGG - chr5_3:58702929-58702948 Msa0820990:intron 45.0%
GCACCTGAACCATTTGATGT+CGG - chr5_3:58703127-58703146 Msa0820990:intron 45.0%
ACTACTGGTCCAATAGATCC+AGG - chr5_3:58703202-58703221 Msa0820990:intron 45.0%
!! CTTTTATGCAGCTGCTGGTT+TGG - chr5_3:58703353-58703372 Msa0820990:CDS 45.0%
! TGGTTTGGGAACCTATGTAG+AGG - chr5_3:58703368-58703387 Msa0820990:CDS 45.0%
TCTCACAAGTGCCTCTACAT+AGG + chr5_3:58703382-58703401 None:intergenic 45.0%
TTGTAGTTACGTTACGAGCG+CGG + chr5_3:58703659-58703678 None:intergenic 45.0%
!! CTTTAGCTTTGTGGAGTTCG+AGG - chr5_3:58704107-58704126 Msa0820990:CDS 45.0%
CTGACACACACACACAACAT+CGG - chr5_3:58704418-58704437 Msa0820990:CDS 45.0%
! CTTCAGATTGAAGGTGTGTC+TGG + chr5_3:58704531-58704550 None:intergenic 45.0%
! ACGTTATAGTTGCTGGCTGT+AGG - chr5_3:58704576-58704595 Msa0820990:intron 45.0%
TAATGGCAGATCATGCTTGC+TGG - chr5_3:58704643-58704662 Msa0820990:CDS 45.0%
CAGATGACAGAGCTCCATTA+GGG - chr5_3:58704668-58704687 Msa0820990:CDS 45.0%
GAGACTCATCATGTCCCTAA+TGG + chr5_3:58704685-58704704 None:intergenic 45.0%
ACTTAGAGAAGCAGCATCGT+TGG - chr5_3:58701065-58701084 Msa0820990:intron 45.0%
! TGAATCTTTAAAGGGGCGTG+TGG - chr5_3:58701125-58701144 Msa0820990:three_prime_UTR 45.0%
TGTCGAGGATGCTATTGCTA+TGG - chr5_3:58701167-58701186 Msa0820990:three_prime_UTR 45.0%
GAGAGAATGTCTCAAGCTTC+CGG - chr5_3:58701814-58701833 Msa0820990:intron 45.0%
AGAGAATGTCTCAAGCTTCC+GGG - chr5_3:58701815-58701834 Msa0820990:intron 45.0%
!!! TTTGGCTTTGCTGGGGTTTT+AGG - chr5_3:58701999-58702018 Msa0820990:CDS 45.0%
AGCCATTAACTACGCTATGG+AGG + chr5_3:58702192-58702211 None:intergenic 45.0%
ATGTCTTTCCCACGTGGAAT+TGG - chr5_3:58702244-58702263 Msa0820990:intron 45.0%
CATGACACTGCCTCAATGAT+AGG + chr5_3:58702539-58702558 None:intergenic 45.0%
! TCTGGAGCATTATCAGAGCA+AGG + chr5_3:58702887-58702906 None:intergenic 45.0%
!! TGGTGTCGTGTATCATCTGA+TGG - chr5_3:58702929-58702948 Msa0820990:intron 45.0%
GCACCTGAACCATTTGATGT+CGG - chr5_3:58703127-58703146 Msa0820990:intron 45.0%
ACTACTGGTCCAATAGATCC+AGG - chr5_3:58703202-58703221 Msa0820990:intron 45.0%
!! CTTTTATGCAGCTGCTGGTT+TGG - chr5_3:58703353-58703372 Msa0820990:CDS 45.0%
! TGGTTTGGGAACCTATGTAG+AGG - chr5_3:58703368-58703387 Msa0820990:CDS 45.0%
TCTCACAAGTGCCTCTACAT+AGG + chr5_3:58703382-58703401 None:intergenic 45.0%
TTGTAGTTACGTTACGAGCG+CGG + chr5_3:58703659-58703678 None:intergenic 45.0%
!! CTTTAGCTTTGTGGAGTTCG+AGG - chr5_3:58704107-58704126 Msa0820990:CDS 45.0%
CTGACACACACACACAACAT+CGG - chr5_3:58704418-58704437 Msa0820990:CDS 45.0%
! CTTCAGATTGAAGGTGTGTC+TGG + chr5_3:58704531-58704550 None:intergenic 45.0%
! ACGTTATAGTTGCTGGCTGT+AGG - chr5_3:58704576-58704595 Msa0820990:intron 45.0%
TAATGGCAGATCATGCTTGC+TGG - chr5_3:58704643-58704662 Msa0820990:CDS 45.0%
CAGATGACAGAGCTCCATTA+GGG - chr5_3:58704668-58704687 Msa0820990:CDS 45.0%
GAGACTCATCATGTCCCTAA+TGG + chr5_3:58704685-58704704 None:intergenic 45.0%
! CGATGCTGCTTCTCTAAGTC+TGG + chr5_3:58701064-58701083 None:intergenic 50.0%
! ATCTTTAAAGGGGCGTGTGG+CGG - chr5_3:58701128-58701147 Msa0820990:three_prime_UTR 50.0%
TAGGTCAGCTGTTCAGAGAG+TGG - chr5_3:58701771-58701790 Msa0820990:intron 50.0%
!!! TTTGCTGGGGTTTTAGGACG+TGG - chr5_3:58702005-58702024 Msa0820990:CDS 50.0%
AATGCTGCATCAGCCAAGCA+AGG - chr5_3:58702068-58702087 Msa0820990:intron 50.0%
ATCGACATGTCTTTCCCACG+TGG - chr5_3:58702238-58702257 Msa0820990:intron 50.0%
CGTCCGACATCAAATGGTTC+AGG + chr5_3:58703133-58703152 None:intergenic 50.0%
!! TAGCTTTGTGGAGTTCGAGG+CGG - chr5_3:58704110-58704129 Msa0820990:CDS 50.0%
ATGCAGCCATCATGCTTGCA+AGG - chr5_3:58704219-58704238 Msa0820990:intron 50.0%
! GCACTGACGCTTCAGATTGA+AGG + chr5_3:58704540-58704559 None:intergenic 50.0%
CCTAATGGAGCTCTGTCATC+TGG + chr5_3:58704670-58704689 None:intergenic 50.0%
CCAGATGACAGAGCTCCATT+AGG - chr5_3:58704667-58704686 Msa0820990:CDS 50.0%
GTGCAATGAGAGTGAGACTG+AGG + chr5_3:58704996-58705015 None:intergenic 50.0%
! CGATGCTGCTTCTCTAAGTC+TGG + chr5_3:58701064-58701083 None:intergenic 50.0%
! ATCTTTAAAGGGGCGTGTGG+CGG - chr5_3:58701128-58701147 Msa0820990:three_prime_UTR 50.0%
TAGGTCAGCTGTTCAGAGAG+TGG - chr5_3:58701771-58701790 Msa0820990:intron 50.0%
!!! TTTGCTGGGGTTTTAGGACG+TGG - chr5_3:58702005-58702024 Msa0820990:CDS 50.0%
AATGCTGCATCAGCCAAGCA+AGG - chr5_3:58702068-58702087 Msa0820990:intron 50.0%
ATCGACATGTCTTTCCCACG+TGG - chr5_3:58702238-58702257 Msa0820990:intron 50.0%
CGTCCGACATCAAATGGTTC+AGG + chr5_3:58703133-58703152 None:intergenic 50.0%
!! TAGCTTTGTGGAGTTCGAGG+CGG - chr5_3:58704110-58704129 Msa0820990:CDS 50.0%
ATGCAGCCATCATGCTTGCA+AGG - chr5_3:58704219-58704238 Msa0820990:intron 50.0%
! GCACTGACGCTTCAGATTGA+AGG + chr5_3:58704540-58704559 None:intergenic 50.0%
CCTAATGGAGCTCTGTCATC+TGG + chr5_3:58704670-58704689 None:intergenic 50.0%
CCAGATGACAGAGCTCCATT+AGG - chr5_3:58704667-58704686 Msa0820990:CDS 50.0%
GTGCAATGAGAGTGAGACTG+AGG + chr5_3:58704996-58705015 None:intergenic 50.0%
! TCTTTAAAGGGGCGTGTGGC+GGG - chr5_3:58701129-58701148 Msa0820990:three_prime_UTR 55.0%
GAGAGTGGAAGAGTCGCTTC+AGG - chr5_3:58701786-58701805 Msa0820990:intron 55.0%
! CTGCGGCACAGGCACTATTT+TGG - chr5_3:58704141-58704160 Msa0820990:CDS 55.0%
! TCTTTAAAGGGGCGTGTGGC+GGG - chr5_3:58701129-58701148 Msa0820990:three_prime_UTR 55.0%
GAGAGTGGAAGAGTCGCTTC+AGG - chr5_3:58701786-58701805 Msa0820990:intron 55.0%
! CTGCGGCACAGGCACTATTT+TGG - chr5_3:58704141-58704160 Msa0820990:CDS 55.0%
! GCGTGTGGCGGGAAGAAACA+AGG - chr5_3:58701140-58701159 Msa0820990:three_prime_UTR 60.0%
GTCTCAAGCTTCCGGGAAGC+AGG - chr5_3:58701822-58701841 Msa0820990:intron 60.0%
CTTTGTGGAGTTCGAGGCGG+TGG - chr5_3:58704113-58704132 Msa0820990:CDS 60.0%
TCGAGGCGGTGGAAATGCTG+CGG - chr5_3:58704124-58704143 Msa0820990:CDS 60.0%
! GCGTGTGGCGGGAAGAAACA+AGG - chr5_3:58701140-58701159 Msa0820990:three_prime_UTR 60.0%
GTCTCAAGCTTCCGGGAAGC+AGG - chr5_3:58701822-58701841 Msa0820990:intron 60.0%
CTTTGTGGAGTTCGAGGCGG+TGG - chr5_3:58704113-58704132 Msa0820990:CDS 60.0%
TCGAGGCGGTGGAAATGCTG+CGG - chr5_3:58704124-58704143 Msa0820990:CDS 60.0%
CGGTGGAAATGCTGCGGCAC+AGG - chr5_3:58704130-58704149 Msa0820990:CDS 65.0%
CGGTGGAAATGCTGCGGCAC+AGG - chr5_3:58704130-58704149 Msa0820990:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 58701043 58705153 58701043 ID=Msa0820990;Name=Msa0820990
chr5_3 mRNA 58701043 58705153 58701043 ID=Msa0820990-mRNA-1;Parent=Msa0820990;Name=Msa0820990-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.91|0.92|0.92|0.83|0.76|13|422|402
chr5_3 exon 58701043 58701076 58701043 ID=Msa0820990-mRNA-1:exon:17882;Parent=Msa0820990-mRNA-1
chr5_3 exon 58701112 58701544 58701112 ID=Msa0820990-mRNA-1:exon:17881;Parent=Msa0820990-mRNA-1
chr5_3 exon 58701934 58702083 58701934 ID=Msa0820990-mRNA-1:exon:17880;Parent=Msa0820990-mRNA-1
chr5_3 exon 58702251 58702385 58702251 ID=Msa0820990-mRNA-1:exon:17879;Parent=Msa0820990-mRNA-1
chr5_3 exon 58702774 58702832 58702774 ID=Msa0820990-mRNA-1:exon:17878;Parent=Msa0820990-mRNA-1
chr5_3 exon 58702973 58703089 58702973 ID=Msa0820990-mRNA-1:exon:17877;Parent=Msa0820990-mRNA-1
chr5_3 exon 58703222 58703402 58703222 ID=Msa0820990-mRNA-1:exon:17876;Parent=Msa0820990-mRNA-1
chr5_3 exon 58703771 58703854 58703771 ID=Msa0820990-mRNA-1:exon:17875;Parent=Msa0820990-mRNA-1
chr5_3 exon 58704107 58704175 58704107 ID=Msa0820990-mRNA-1:exon:17874;Parent=Msa0820990-mRNA-1
chr5_3 exon 58704353 58704493 58704353 ID=Msa0820990-mRNA-1:exon:17873;Parent=Msa0820990-mRNA-1
chr5_3 exon 58704640 58704732 58704640 ID=Msa0820990-mRNA-1:exon:17872;Parent=Msa0820990-mRNA-1
chr5_3 exon 58705008 58705136 58705008 ID=Msa0820990-mRNA-1:exon:17871;Parent=Msa0820990-mRNA-1
chr5_3 exon 58705148 58705153 58705148 ID=Msa0820990-mRNA-1:exon:17870;Parent=Msa0820990-mRNA-1
chr5_3 CDS 58705148 58705153 58705148 ID=Msa0820990-mRNA-1:cds;Parent=Msa0820990-mRNA-1
chr5_3 CDS 58705008 58705136 58705008 ID=Msa0820990-mRNA-1:cds;Parent=Msa0820990-mRNA-1
chr5_3 CDS 58704640 58704732 58704640 ID=Msa0820990-mRNA-1:cds;Parent=Msa0820990-mRNA-1
chr5_3 CDS 58704353 58704493 58704353 ID=Msa0820990-mRNA-1:cds;Parent=Msa0820990-mRNA-1
chr5_3 CDS 58704107 58704175 58704107 ID=Msa0820990-mRNA-1:cds;Parent=Msa0820990-mRNA-1
chr5_3 CDS 58703771 58703854 58703771 ID=Msa0820990-mRNA-1:cds;Parent=Msa0820990-mRNA-1
chr5_3 CDS 58703222 58703402 58703222 ID=Msa0820990-mRNA-1:cds;Parent=Msa0820990-mRNA-1
chr5_3 CDS 58702973 58703089 58702973 ID=Msa0820990-mRNA-1:cds;Parent=Msa0820990-mRNA-1
chr5_3 CDS 58702774 58702832 58702774 ID=Msa0820990-mRNA-1:cds;Parent=Msa0820990-mRNA-1
chr5_3 CDS 58702251 58702385 58702251 ID=Msa0820990-mRNA-1:cds;Parent=Msa0820990-mRNA-1
chr5_3 CDS 58701934 58702083 58701934 ID=Msa0820990-mRNA-1:cds;Parent=Msa0820990-mRNA-1
chr5_3 CDS 58701500 58701544 58701500 ID=Msa0820990-mRNA-1:cds;Parent=Msa0820990-mRNA-1
chr5_3 three_prime_UTR 58701112 58701499 58701112 ID=Msa0820990-mRNA-1:three_prime_utr;Parent=Msa0820990-mRNA-1
chr5_3 three_prime_UTR 58701043 58701076 58701043 ID=Msa0820990-mRNA-1:three_prime_utr;Parent=Msa0820990-mRNA-1
Gene Sequence

>Msa0820990

ATGCTGGCCAGACTTAGAGAAGCAGCATCGTTGGAAAAACATGTTCTTTTAAAGAAACTCAGAGATTCACTTGAATCTTTAAAGGGGCGTGTGGCGGGAAGAAACAAGGATGATGTCGAGGATGCTATTGCTATGGTTGAAGCTCTAGCAGTTCAGTTAACTCAAAGGGAAGGGGAACTATTACAAGAGAAGGCAGAGGTTAAAAAACTGGCAAATTTTCTTAAACAGGCTTCTGAAGATGCTAAGAAACTTGTTGATGAGGAAAGAGCTTTTGCTCGTGCAGAAATAGATAATGCTAGGTCAGCTGTTCAGAGAGTGGAAGAGTCGCTTCAGGAGCATGAGAGAATGTCTCAAGCTTCCGGGAAGCAGGACGTGGAACAATTAATGAAGGAGGTTCAAGAGGCTCGAAGAATCAAAATGCTGCATCAGCCAAGCAAGGTCATGGATATGGAACATGAACTTCAAGCATTGAGGGCTCAACTTGCAGAGAAGACCAGACATTATCTTCGACTTCAGAAGGAGATAACAAGGACAAAGAAAGGAGAGGAAAATGTTCCACATTTATATGAACTTGAAGGGAATGAAACCTTAGGCTCCTATTTGCAAATTCAACCTTGCTCTGATAATGCTCCAGATCTTTCAAATTGTTCAATTCAATGGTGTCGTGTATCATCTGATGGTGCCAAAAAAGAACTTATTTCAGGAGCTATAAAATCAGTTTACGCACCTGAACCATTTGATGTCGGACGAATATTGCATGTTGATATTATTTCAGAAAACCAGCACATCATACTTTCAACTACTGGTCCAATAGATCCAGCTGCTGGTTTGGGAACCTATGTAGAGGCACTTGTGAGAAAACATGACACTGAATTCAATGTAGTTGTAACACAAATGAGTGGTTTGCATCATCCAACTGAATCTATTCATGTACTTCATGTTGGAAAAATGAGGATCAAACTCTGCAAAGGAAAGACAACAATTGCCAAAGAATATTATTCAAGTTCAATGCAGCTTTGTGGAGTTCGAGGCGGTGGAAATGCTGCGGCACAGGCACTATTTTGGCAGCCAAAACAAGGACTTTCTTTTGTATTGGCTTTTGAATCAGAGCGAGAAAGGAATGCAGCCATCATGCTTGCAAGGAGATTTGCATTTGACTGTAATATCATGCTTGCTGGACCAGATGACAGAGCTCCATTAGGGACATGA

Protein sequence

>Msa0820990

MLARLREAASLEKHVLLKKLRDSLESLKGRVAGRNKDDVEDAIAMVEALAVQLTQREGELLQEKAEVKKLANFLKQASEDAKKLVDEERAFARAEIDNARSAVQRVEESLQEHERMSQASGKQDVEQLMKEVQEARRIKMLHQPSKVMDMEHELQALRAQLAEKTRHYLRLQKEITRTKKGEENVPHLYELEGNETLGSYLQIQPCSDNAPDLSNCSIQWCRVSSDGAKKELISGAIKSVYAPEPFDVGRILHVDIISENQHIILSTTGPIDPAAGLGTYVEALVRKHDTEFNVVVTQMSGLHHPTESIHVLHVGKMRIKLCKGKTTIAKEYYSSSMQLCGVRGGGNAAAQALFWQPKQGLSFVLAFESERERNAAIMLARRFAFDCNIMLAGPDDRAPLGT*