Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780980 | XP_013454338.1 | 99.595 | 494 | 2 | 0 | 1 | 494 | 1 | 494 | 0.0 | 1018 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780980 | sp|O48791|SCAB1_ARATH | 78.499 | 493 | 106 | 0 | 1 | 493 | 1 | 493 | 0.0 | 815 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780980 | A0A072UF62 | 99.595 | 494 | 2 | 0 | 1 | 494 | 1 | 494 | 0.0 | 1018 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0741270 | Msa0780980 | 0.977859 | 1.249332e-144 | -8.615850e-47 |
| Msa0780980 | Msa0820990 | 0.866810 | 2.171579e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780980 | MtrunA17_Chr5g0441311 | 99.595 | 494 | 2 | 0 | 1 | 494 | 12 | 505 | 0.0 | 1016 |
| Msa0780980 | MtrunA17_Chr3g0093711 | 84.254 | 489 | 73 | 2 | 1 | 489 | 1 | 485 | 0.0 | 843 |
| Msa0780980 | MtrunA17_Chr7g0255781 | 59.100 | 489 | 198 | 2 | 1 | 488 | 1 | 488 | 0.0 | 600 |
| Msa0780980 | MtrunA17_Chr6g0482421 | 59.322 | 118 | 33 | 3 | 95 | 211 | 11 | 114 | 4.24e-32 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780980 | AT2G26770.2 | 78.499 | 493 | 106 | 0 | 1 | 493 | 1 | 493 | 0.0 | 815 |
| Msa0780980 | AT2G26770.3 | 78.499 | 493 | 106 | 0 | 1 | 493 | 1 | 493 | 0.0 | 815 |
| Msa0780980 | AT2G26770.1 | 78.499 | 493 | 106 | 0 | 1 | 493 | 1 | 493 | 0.0 | 815 |
| Msa0780980 | AT3G56480.1 | 57.602 | 467 | 193 | 4 | 26 | 488 | 25 | 490 | 0.0 | 541 |
| Msa0780980 | AT2G40820.4 | 55.158 | 475 | 209 | 3 | 17 | 488 | 44 | 517 | 0.0 | 535 |
| Msa0780980 | AT2G40820.2 | 55.158 | 475 | 209 | 3 | 17 | 488 | 19 | 492 | 0.0 | 535 |
| Msa0780980 | AT2G40820.1 | 55.158 | 475 | 209 | 3 | 17 | 488 | 19 | 492 | 0.0 | 535 |
| Msa0780980 | AT2G40820.3 | 55.158 | 475 | 209 | 3 | 17 | 488 | 31 | 504 | 0.0 | 534 |
| Msa0780980 | AT2G40820.5 | 55.352 | 383 | 168 | 2 | 108 | 488 | 1 | 382 | 5.79e-152 | 439 |
Find 126 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGAGGGTAACTCGTGATTT+TGG | 0.179789 | 5_2:+63176316 | Msa0780980:CDS |
| TGAGTTGACTAGAGATTTAT+AGG | 0.202805 | 5_2:+63180602 | Msa0780980:three_prime_UTR |
| TTAGCTCCAATTCTATAATT+AGG | 0.219735 | 5_2:-63176406 | None:intergenic |
| AGATTCACTTGAATCTTTAA+AGG | 0.229773 | 5_2:+63176809 | Msa0780980:CDS |
| CTGCGGCACAGGCACTATTT+TGG | 0.245447 | 5_2:+63179834 | Msa0780980:CDS |
| CGGTTTCCTAATTATAGAAT+TGG | 0.276328 | 5_2:+63176400 | Msa0780980:CDS |
| TGAACTTGAATAATATTCTT+TGG | 0.279096 | 5_2:-63179610 | None:intergenic |
| GCAAGGTTGAATTTGCAAAT+AGG | 0.304721 | 5_2:-63178560 | None:intergenic |
| CCTTCATAGATAACACTTTA+GGG | 0.322062 | 5_2:-63176456 | None:intergenic |
| ATTGAACAATTTGAAAGATC+TGG | 0.331159 | 5_2:-63178595 | None:intergenic |
| ACTCTCATTGCACTTATCTA+TGG | 0.337805 | 5_2:+63180694 | Msa0780980:three_prime_UTR |
| GAAACGATACCTGGATCTAT+TGG | 0.343800 | 5_2:-63178904 | None:intergenic |
| AGATCATGTGAAGATGAAAA+TGG | 0.346925 | 5_2:-63175472 | None:intergenic |
| TCCTTCATAGATAACACTTT+AGG | 0.347362 | 5_2:-63176457 | None:intergenic |
| ACAAAAGAAAGTCCTTGTTT+TGG | 0.350532 | 5_2:-63179860 | None:intergenic |
| GAGAGAATGTCTCAAGCTTC+CGG | 0.356262 | 5_2:+63177507 | Msa0780980:CDS |
| GATTCACTTGAATCTTTAAA+GGG | 0.364770 | 5_2:+63176810 | Msa0780980:CDS |
| CATATTATAGTGGTTGCAAA+TGG | 0.372084 | 5_2:+63180628 | Msa0780980:three_prime_UTR |
| TTTCAAATTGTTCAATTCAA+TGG | 0.375625 | 5_2:+63178602 | Msa0780980:CDS |
| TGATTTGTAGGTCATGGATA+TGG | 0.378136 | 5_2:+63178025 | Msa0780980:intron |
| TAATGGCAGATCATGCTTGC+TGG | 0.391824 | 5_2:+63180336 | Msa0780980:intron |
| CCAGATGACAGAGCTCCATT+AGG | 0.399289 | 5_2:+63180360 | Msa0780980:CDS |
| CAACTTGGTTATTCAACAAC+GGG | 0.401933 | 5_2:-63175404 | None:intergenic |
| CCTAATGGAGCTCTGTCATC+TGG | 0.403344 | 5_2:-63180360 | None:intergenic |
| CGGTGGAAATGCTGCGGCAC+AGG | 0.409902 | 5_2:+63179823 | Msa0780980:CDS |
| CGTCCGACATCAAATGGTTC+AGG | 0.413959 | 5_2:-63178823 | None:intergenic |
| GAGACTCATCATGTCCCTAA+TGG | 0.414575 | 5_2:-63180375 | None:intergenic |
| AGAGAATGTCTCAAGCTTCC+GGG | 0.422863 | 5_2:+63177508 | Msa0780980:CDS |
| GAGAGTGGAAGAGTCGCTTC+AGG | 0.424559 | 5_2:+63177479 | Msa0780980:CDS |
| TGGAGCTAACGATCAGATAA+TGG | 0.425893 | 5_2:+63176420 | Msa0780980:CDS |
| TTGTGATTTGTAGAGGGAGG+TGG | 0.425962 | 5_2:+63176281 | Msa0780980:intron |
| CTTTGTGGAGTTCGAGGCGG+TGG | 0.433322 | 5_2:+63179806 | Msa0780980:CDS |
| GTCTCAAGCTTCCGGGAAGC+AGG | 0.435496 | 5_2:+63177515 | Msa0780980:CDS |
| CCACATTTATATGAACTTGA+AGG | 0.435639 | 5_2:+63178520 | Msa0780980:CDS |
| TCTTTAAAGGGGCGTGTGGC+GGG | 0.444564 | 5_2:+63176822 | Msa0780980:CDS |
| CGATGCTGCTTCTCTAAGTC+TGG | 0.446998 | 5_2:-63176754 | None:intergenic |
| TATTTCGTATATACCTTGCT+TGG | 0.451392 | 5_2:-63177774 | None:intergenic |
| CTTTAGCTTTGTGGAGTTCG+AGG | 0.452307 | 5_2:+63179800 | Msa0780980:intron |
| TTATAGGTTACATATTATAG+TGG | 0.459350 | 5_2:+63180618 | Msa0780980:three_prime_UTR |
| TAGTAAATTTGAGAAGGGTT+TGG | 0.464254 | 5_2:+63176546 | Msa0780980:CDS |
| CAGATAACAAGGACAAAGAA+AGG | 0.464921 | 5_2:+63178484 | Msa0780980:intron |
| CACATCATACTTTCAACTAC+TGG | 0.472340 | 5_2:+63178880 | Msa0780980:CDS |
| CAGATGACAGAGCTCCATTA+GGG | 0.473664 | 5_2:+63180361 | Msa0780980:CDS |
| TCTCACAAGTGCCTCTACAT+AGG | 0.482662 | 5_2:-63179072 | None:intergenic |
| CGATCAGATAATGGAGGCAA+AGG | 0.489213 | 5_2:+63176429 | Msa0780980:CDS |
| AGCAGTTCAGTTAACTCAAA+GGG | 0.490217 | 5_2:+63177168 | Msa0780980:CDS |
| AATATTCGTCCGACATCAAA+TGG | 0.496654 | 5_2:-63178829 | None:intergenic |
| GATCATGTGAAGATGAAAAT+GGG | 0.498127 | 5_2:-63175471 | None:intergenic |
| ATGTGGTATTTGCTACTAGT+CGG | 0.499202 | 5_2:+63176380 | Msa0780980:CDS |
| CCCTAAAGTGTTATCTATGA+AGG | 0.501476 | 5_2:+63176456 | Msa0780980:CDS |
| TCTATTCATGTACTTCATGT+TGG | 0.504883 | 5_2:+63179546 | Msa0780980:CDS |
| ATCTTTAAAGGGGCGTGTGG+CGG | 0.508676 | 5_2:+63176821 | Msa0780980:CDS |
| ACATGAACTTCAAGCATTGA+GGG | 0.508731 | 5_2:+63178049 | Msa0780980:CDS |
| CACATTTATATGAACTTGAA+GGG | 0.509106 | 5_2:+63178521 | Msa0780980:CDS |
| ATATTATAGTGGTTGCAAAT+GGG | 0.512829 | 5_2:+63180629 | Msa0780980:three_prime_UTR |
| GGACGTGGAACAATTAATGA+AGG | 0.517482 | 5_2:+63177713 | Msa0780980:intron |
| ATTTGAGAAGGGTTTGGCTG+CGG | 0.519907 | 5_2:+63176552 | Msa0780980:CDS |
| AACTCATAATTAATTACAAG+TGG | 0.520841 | 5_2:-63180418 | None:intergenic |
| CTGAAGTCGAAGATAATGTC+TGG | 0.522449 | 5_2:-63178090 | None:intergenic |
| AATTTGCAAATAGGAGCCTA+AGG | 0.525073 | 5_2:-63178551 | None:intergenic |
| CTTGCTAGTAAATTTGAGAA+GGG | 0.525629 | 5_2:+63176541 | Msa0780980:CDS |
| GCGTGAGACTGCTATGTTGT+TGG | 0.528898 | 5_2:+63176489 | Msa0780980:CDS |
| CTTGAAGGGAATGAAACCTT+AGG | 0.529166 | 5_2:+63178535 | Msa0780980:CDS |
| GAAGATGAAAATGGGTGGTT+AGG | 0.529717 | 5_2:-63175463 | None:intergenic |
| ATATTATTCAAGTTCAATGC+AGG | 0.530369 | 5_2:+63179617 | Msa0780980:CDS |
| CCTTGCTAGTAAATTTGAGA+AGG | 0.532672 | 5_2:+63176540 | Msa0780980:CDS |
| GCAAAAGGGTGGCTGCAACT+TGG | 0.532840 | 5_2:-63175419 | None:intergenic |
| ACTACTGGTCCAATAGATCC+AGG | 0.546915 | 5_2:+63178895 | Msa0780980:CDS |
| ACTTAGAGAAGCAGCATCGT+TGG | 0.548424 | 5_2:+63176758 | Msa0780980:CDS |
| AACATGAACTTCAAGCATTG+AGG | 0.549149 | 5_2:+63178048 | Msa0780980:CDS |
| TGCTAAGAAACTTGTTGATG+AGG | 0.551185 | 5_2:+63177407 | Msa0780980:CDS |
| GCGTGTGGCGGGAAGAAACA+AGG | 0.553645 | 5_2:+63176833 | Msa0780980:CDS |
| TTCAGTTAACTCAAAGGGAA+GGG | 0.553933 | 5_2:+63177173 | Msa0780980:CDS |
| CCTTCTCAAATTTACTAGCA+AGG | 0.554709 | 5_2:-63176540 | None:intergenic |
| ATTGTAGCAGTAGATGCAAA+AGG | 0.557812 | 5_2:-63175434 | None:intergenic |
| TAGTTGAAAGTATGATGTGC+TGG | 0.559524 | 5_2:-63178876 | None:intergenic |
| ACATTATCTTCGACTTCAGA+AGG | 0.561300 | 5_2:+63178094 | Msa0780980:CDS |
| TAGCAGTTCAGTTAACTCAA+AGG | 0.564626 | 5_2:+63177167 | Msa0780980:CDS |
| ATGCAGCCATCATGCTTGCA+AGG | 0.568067 | 5_2:+63179912 | Msa0780980:CDS |
| CCTTCAAGTTCATATAAATG+TGG | 0.571227 | 5_2:-63178520 | None:intergenic |
| GTGCAGAAATAGATAATGCT+AGG | 0.572393 | 5_2:+63177445 | Msa0780980:CDS |
| AGGGGAACTATTACAAGAGA+AGG | 0.575891 | 5_2:+63177192 | Msa0780980:CDS |
| AGTACATGAATAGATTCAGT+TGG | 0.577590 | 5_2:-63179537 | None:intergenic |
| GCCTGCAGTGTCTTCTGATG+TGG | 0.583820 | 5_2:+63176363 | Msa0780980:CDS |
| TCAACAACGGGAATCACCAC+TGG | 0.585540 | 5_2:-63175392 | None:intergenic |
| ATTAATGAAGGAGGTTCAAG+AGG | 0.588663 | 5_2:+63177725 | Msa0780980:CDS |
| GTTCAGTTAACTCAAAGGGA+AGG | 0.590453 | 5_2:+63177172 | Msa0780980:CDS |
| GCAACTTGGTTATTCAACAA+CGG | 0.592800 | 5_2:-63175405 | None:intergenic |
| TTGCACTTATCTATGGACAT+TGG | 0.593810 | 5_2:+63180701 | Msa0780980:three_prime_UTR |
| TCAGTTAACTCAAAGGGAAG+GGG | 0.595135 | 5_2:+63177174 | Msa0780980:CDS |
| ATGAGGATCAAACTCTGCAA+AGG | 0.596515 | 5_2:+63179573 | Msa0780980:CDS |
| AAATCTCCTTGCAAGCATGA+TGG | 0.600891 | 5_2:-63179918 | None:intergenic |
| CAATATAACATAACAAGCCA+CGG | 0.602549 | 5_2:-63180485 | None:intergenic |
| GGCTGCTAAGTTGTCTGAAG+AGG | 0.609672 | 5_2:+63176573 | Msa0780980:CDS |
| TTGTAGCAGTAGATGCAAAA+GGG | 0.611006 | 5_2:-63175433 | None:intergenic |
| ATTCACTTGAATCTTTAAAG+GGG | 0.617778 | 5_2:+63176811 | Msa0780980:CDS |
| AACAAGGACAAAGAAAGGAG+AGG | 0.619273 | 5_2:+63178489 | Msa0780980:CDS |
| ACTCATAATTAATTACAAGT+GGG | 0.620306 | 5_2:-63180417 | None:intergenic |
| GGTGGTTGTAAGAGATGACG+AGG | 0.623089 | 5_2:+63176299 | Msa0780980:exon |
| TGGTGTCGTGTATCATCTGA+TGG | 0.625922 | 5_2:+63178622 | Msa0780980:CDS |
| TAGGTCAGCTGTTCAGAGAG+TGG | 0.628287 | 5_2:+63177464 | Msa0780980:CDS |
| TGAATCTTTAAAGGGGCGTG+TGG | 0.628341 | 5_2:+63176818 | Msa0780980:CDS |
| GCACCTGAACCATTTGATGT+CGG | 0.631127 | 5_2:+63178820 | Msa0780980:CDS |
| TAAAACTTATGTATAATACA+AGG | 0.632880 | 5_2:-63180454 | None:intergenic |
| AAGAAACAAGGATGATGTCG+AGG | 0.633966 | 5_2:+63176845 | Msa0780980:CDS |
| ACCACATCAGAAGACACTGC+AGG | 0.635392 | 5_2:-63176364 | None:intergenic |
| TAAAGTGTTATCTATGAAGG+AGG | 0.636468 | 5_2:+63176459 | Msa0780980:CDS |
| AATGCTGCATCAGCCAAGCA+AGG | 0.639243 | 5_2:+63177761 | Msa0780980:CDS |
| TCTAGTCAACTCACTCACAA+AGG | 0.648601 | 5_2:-63180592 | None:intergenic |
| TCTGGAGCATTATCAGAGCA+AGG | 0.648849 | 5_2:-63178577 | None:intergenic |
| TCGAGGCGGTGGAAATGCTG+CGG | 0.651682 | 5_2:+63179817 | Msa0780980:CDS |
| TGTCGAGGATGCTATTGCTA+TGG | 0.654260 | 5_2:+63176860 | Msa0780980:CDS |
| GAACTGAGAGACGATTATGC+TGG | 0.654568 | 5_2:-63176513 | None:intergenic |
| GTAGTTGTAACACAAATGAG+TGG | 0.656424 | 5_2:+63179504 | Msa0780980:CDS |
| GTGCAATGAGAGTGAGACTG+AGG | 0.657616 | 5_2:-63180684 | None:intergenic |
| TTATCTTCGACTTCAGAAGG+AGG | 0.660621 | 5_2:+63178097 | Msa0780980:CDS |
| ACTATTACAAGAGAAGGCAG+AGG | 0.660927 | 5_2:+63177198 | Msa0780980:CDS |
| CGTGGAACAATTAATGAAGG+AGG | 0.670679 | 5_2:+63177716 | Msa0780980:CDS |
| TGGTAATGATTCATATCTTG+TGG | 0.672912 | 5_2:+63180514 | Msa0780980:intron |
| TGGTTTGGGAACCTATGTAG+AGG | 0.673790 | 5_2:+63179061 | Msa0780980:CDS |
| AAAAGCATCAACAAGACCAG+TGG | 0.687259 | 5_2:+63175376 | Msa0780980:five_prime_UTR |
| TAGCTTTGTGGAGTTCGAGG+CGG | 0.690196 | 5_2:+63179803 | Msa0780980:intron |
| TAGCAGTAGATGCAAAAGGG+TGG | 0.701239 | 5_2:-63175430 | None:intergenic |
| AGCTAACGATCAGATAATGG+AGG | 0.702876 | 5_2:+63176423 | Msa0780980:CDS |
| GTGGTTGTAAGAGATGACGA+GGG | 0.726958 | 5_2:+63176300 | Msa0780980:exon |
| CATGTGAAGATGAAAATGGG+TGG | 0.736302 | 5_2:-63175468 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGAGTAAAAAAAAT+AGG | + | chr5_2:63175569-63175588 | Msa0780980:intron | 10.0% |
| !! | TACTTCAAATTATATAAAAA+AGG | + | chr5_2:63175746-63175765 | Msa0780980:intron | 10.0% |
| !! | ACTTCAAATTATATAAAAAA+GGG | + | chr5_2:63175747-63175766 | Msa0780980:intron | 10.0% |
| !! | AACATAAATATATGTTTATT+AGG | - | chr5_2:63176938-63176957 | None:intergenic | 10.0% |
| !!! | TACATTTTTTTTTTTTTTGA+GGG | - | chr5_2:63178197-63178216 | None:intergenic | 10.0% |
| !!! | TCAAAACTTTTTTAAAAAAT+TGG | - | chr5_2:63179264-63179283 | None:intergenic | 10.0% |
| !! | CTTCAAATTATATAAAAAAG+GGG | + | chr5_2:63175748-63175767 | Msa0780980:intron | 15.0% |
| !!! | AAAATTGATTTGATATGAAT+TGG | + | chr5_2:63175975-63175994 | Msa0780980:intron | 15.0% |
| !!! | AAAATTGATTTTGATATGTT+TGG | - | chr5_2:63176149-63176168 | None:intergenic | 15.0% |
| !!! | TTTGTTTGGATTTTTTTTTT+TGG | + | chr5_2:63177674-63177693 | Msa0780980:intron | 15.0% |
| !!! | CTACATTTTTTTTTTTTTTG+AGG | - | chr5_2:63178198-63178217 | None:intergenic | 15.0% |
| !! | TGTTTATATTGAAACTATAA+AGG | + | chr5_2:63178983-63179002 | Msa0780980:intron | 15.0% |
| !! | TAAAACTTATGTATAATACA+AGG | - | chr5_2:63180457-63180476 | None:intergenic | 15.0% |
| !! | TCAACAAAAAAAGACAAAAA+AGG | - | chr5_2:63175516-63175535 | None:intergenic | 20.0% |
| !! | AGTAAAAAAAATAGGAAACT+AGG | + | chr5_2:63175577-63175596 | Msa0780980:intron | 20.0% |
| !! | GTAAAAAAAATAGGAAACTA+GGG | + | chr5_2:63175578-63175597 | Msa0780980:intron | 20.0% |
| !!! | ATTCATAAGTCTCTTATTTT+TGG | + | chr5_2:63175677-63175696 | Msa0780980:intron | 20.0% |
| !! | TAAATTAGTTGAATCTTAAG+TGG | + | chr5_2:63176019-63176038 | Msa0780980:intron | 20.0% |
| !! | ACATAAGGAATAATAAGTAT+AGG | - | chr5_2:63176196-63176215 | None:intergenic | 20.0% |
| !! | ACAAAATCAAAAACAACATA+AGG | - | chr5_2:63176211-63176230 | None:intergenic | 20.0% |
| !! | TATATGTTTATTAGGAAGAA+AGG | - | chr5_2:63176930-63176949 | None:intergenic | 20.0% |
| !!! | TGCATTAATGATTAATTTGA+TGG | + | chr5_2:63177599-63177618 | Msa0780980:intron | 20.0% |
| !!! | ATTTTTTTTTTTGGCTTTGT+TGG | + | chr5_2:63177683-63177702 | Msa0780980:intron | 20.0% |
| !!! | TTTTTTTTTTTGGCTTTGTT+GGG | + | chr5_2:63177684-63177703 | Msa0780980:intron | 20.0% |
| !! | TTATATATCTAGACTAAAGA+CGG | - | chr5_2:63177812-63177831 | None:intergenic | 20.0% |
| !!! | ACTGTTTGTTTTTTGTATTT+TGG | + | chr5_2:63177907-63177926 | Msa0780980:intron | 20.0% |
| !!! | TATTCAGTTTTTTTTTCCAT+TGG | - | chr5_2:63178143-63178162 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGAGGGAAATA+TGG | - | chr5_2:63178189-63178208 | None:intergenic | 20.0% |
| !! | TGTCATGTTAAAATATACTT+AGG | + | chr5_2:63178245-63178264 | Msa0780980:intron | 20.0% |
| !! | GTCATGTTAAAATATACTTA+GGG | + | chr5_2:63178246-63178265 | Msa0780980:intron | 20.0% |
| !! | TCATGTTAAAATATACTTAG+GGG | + | chr5_2:63178247-63178266 | Msa0780980:intron | 20.0% |
| !! | TTTCAAATTGTTCAATTCAA+TGG | + | chr5_2:63178602-63178621 | Msa0780980:CDS | 20.0% |
| !!! | CATATAGATTTGTTAAAACA+AGG | - | chr5_2:63179326-63179345 | None:intergenic | 20.0% |
| !!! | CTTGTTTTAACAAATCTATA+TGG | + | chr5_2:63179324-63179343 | Msa0780980:intron | 20.0% |
| !! | TGAACTTGAATAATATTCTT+TGG | - | chr5_2:63179613-63179632 | None:intergenic | 20.0% |
| !!! | ATATTCATTATTTGTTATGC+AGG | - | chr5_2:63180041-63180060 | None:intergenic | 20.0% |
| !! | CTTCAATTATCAACTATTAA+TGG | - | chr5_2:63180089-63180108 | None:intergenic | 20.0% |
| !! | TCAATAAAGAACAAACTAAA+GGG | - | chr5_2:63180304-63180323 | None:intergenic | 20.0% |
| !! | ATCAATAAAGAACAAACTAA+AGG | - | chr5_2:63180305-63180324 | None:intergenic | 20.0% |
| !! | ACTCATAATTAATTACAAGT+GGG | - | chr5_2:63180420-63180439 | None:intergenic | 20.0% |
| !! | AACTCATAATTAATTACAAG+TGG | - | chr5_2:63180421-63180440 | None:intergenic | 20.0% |
| !! | TTATAGGTTACATATTATAG+TGG | + | chr5_2:63180618-63180637 | Msa0780980:three_prime_UTR | 20.0% |
| !!! | TGTTTTTTCATAAGAAAACT+TGG | + | chr5_2:63180740-63180759 | Msa0780980:three_prime_UTR | 20.0% |
| ! | AATCTTAAGTGGTTTATGTT+TGG | + | chr5_2:63176030-63176049 | Msa0780980:intron | 25.0% |
| ! | AGGAATAATAAGTATAGGTA+TGG | - | chr5_2:63176191-63176210 | None:intergenic | 25.0% |
| ! | AAAAATGCAAACTTTAGCTA+AGG | - | chr5_2:63176263-63176282 | None:intergenic | 25.0% |
| ! | TTAGCTCCAATTCTATAATT+AGG | - | chr5_2:63176409-63176428 | None:intergenic | 25.0% |
| ! | AGATTCACTTGAATCTTTAA+AGG | + | chr5_2:63176809-63176828 | Msa0780980:CDS | 25.0% |
| ! | GATTCACTTGAATCTTTAAA+GGG | + | chr5_2:63176810-63176829 | Msa0780980:CDS | 25.0% |
| !! | ATTCACTTGAATCTTTAAAG+GGG | + | chr5_2:63176811-63176830 | Msa0780980:CDS | 25.0% |
| !!! | AGTTCTTTTGGAGATAAAAT+AGG | + | chr5_2:63176885-63176904 | Msa0780980:intron | 25.0% |
| ! | AATTTCTTTAAGCACATAAC+TGG | - | chr5_2:63176964-63176983 | None:intergenic | 25.0% |
| !! | TTTTATTATTTGCACTCTTC+AGG | + | chr5_2:63177135-63177154 | Msa0780980:intron | 25.0% |
| !! | ATTTGACATGTTTTATCACA+TGG | - | chr5_2:63177565-63177584 | None:intergenic | 25.0% |
| !! | GCAACTGAATAATTTTTGTT+TGG | + | chr5_2:63177660-63177679 | Msa0780980:intron | 25.0% |
| !!! | TTTTTTTTTTGGCTTTGTTG+GGG | + | chr5_2:63177685-63177704 | Msa0780980:intron | 25.0% |
| !! | AACTTCATCAAGTTATTTCA+AGG | + | chr5_2:63177979-63177998 | Msa0780980:intron | 25.0% |
| !!! | TTGATTGTTGATTGATTTGT+AGG | + | chr5_2:63178013-63178032 | Msa0780980:intron | 25.0% |
| ! | CACATTTATATGAACTTGAA+GGG | + | chr5_2:63178521-63178540 | Msa0780980:CDS | 25.0% |
| ! | ATTGAACAATTTGAAAGATC+TGG | - | chr5_2:63178598-63178617 | None:intergenic | 25.0% |
| !!! | ACCTGAAATAAGTTCTTTTT+TGG | - | chr5_2:63178650-63178669 | None:intergenic | 25.0% |
| !! | ATATTATTCAAGTTCAATGC+AGG | + | chr5_2:63179617-63179636 | Msa0780980:CDS | 25.0% |
| !! | TTCAAATTGTCAATGCTTTT+TGG | + | chr5_2:63179643-63179662 | Msa0780980:intron | 25.0% |
| ! | ACTATTAATGGAAAAGTTAG+CGG | - | chr5_2:63180077-63180096 | None:intergenic | 25.0% |
| !! | GGGAAATAAGTAAGATTTTA+AGG | - | chr5_2:63180400-63180419 | None:intergenic | 25.0% |
| !!! | AATTTTGTTTGATCAACACT+TGG | + | chr5_2:63180554-63180573 | Msa0780980:three_prime_UTR | 25.0% |
| !!! | ATTTTGTTTGATCAACACTT+GGG | + | chr5_2:63180555-63180574 | Msa0780980:three_prime_UTR | 25.0% |
| ! | ATATTATAGTGGTTGCAAAT+GGG | + | chr5_2:63180629-63180648 | Msa0780980:three_prime_UTR | 25.0% |
| ! | AAAAACACAGAAATTTCTCA+AGG | - | chr5_2:63180727-63180746 | None:intergenic | 25.0% |
| GATCATGTGAAGATGAAAAT+GGG | - | chr5_2:63175474-63175493 | None:intergenic | 30.0% | |
| AGATCATGTGAAGATGAAAA+TGG | - | chr5_2:63175475-63175494 | None:intergenic | 30.0% | |
| CATTAAGCTTATGAAAGTGA+AGG | - | chr5_2:63175637-63175656 | None:intergenic | 30.0% | |
| GGAAAAAAGAAAGAAGAAGA+AGG | + | chr5_2:63175769-63175788 | Msa0780980:intron | 30.0% | |
| ! | TTCAATTAGCTTAATGCTAG+TGG | + | chr5_2:63175851-63175870 | Msa0780980:intron | 30.0% |
| !! | TGCATTTTTGTGATTTGTAG+AGG | + | chr5_2:63176274-63176293 | Msa0780980:intron | 30.0% |
| !! | GCATTTTTGTGATTTGTAGA+GGG | + | chr5_2:63176275-63176294 | Msa0780980:intron | 30.0% |
| CGGTTTCCTAATTATAGAAT+TGG | + | chr5_2:63176400-63176419 | Msa0780980:CDS | 30.0% | |
| CCTTCATAGATAACACTTTA+GGG | - | chr5_2:63176459-63176478 | None:intergenic | 30.0% | |
| TCCTTCATAGATAACACTTT+AGG | - | chr5_2:63176460-63176479 | None:intergenic | 30.0% | |
| ! | TAAAGTGTTATCTATGAAGG+AGG | + | chr5_2:63176459-63176478 | Msa0780980:CDS | 30.0% |
| CTTGCTAGTAAATTTGAGAA+GGG | + | chr5_2:63176541-63176560 | Msa0780980:CDS | 30.0% | |
| TAGTAAATTTGAGAAGGGTT+TGG | + | chr5_2:63176546-63176565 | Msa0780980:CDS | 30.0% | |
| !! | AGTTTTTCAACTAGAAAGCA+AGG | - | chr5_2:63176607-63176626 | None:intergenic | 30.0% |
| TGAAAAGCTTGATTAAAGTC+AGG | - | chr5_2:63176715-63176734 | None:intergenic | 30.0% | |
| ! | TAATCAAGCTTTTCATATGC+TGG | + | chr5_2:63176720-63176739 | Msa0780980:intron | 30.0% |
| !! | TCTTTTGGAGATAAAATAGG+AGG | + | chr5_2:63176888-63176907 | Msa0780980:intron | 30.0% |
| TAATTACAATGTTGCCTTCA+CGG | - | chr5_2:63176987-63177006 | None:intergenic | 30.0% | |
| CTTGTACTCTATGAAAATCA+TGG | + | chr5_2:63177017-63177036 | Msa0780980:intron | 30.0% | |
| ATGCATAGTGAATAAACTTG+AGG | + | chr5_2:63177073-63177092 | Msa0780980:intron | 30.0% | |
| ATAGTGAATAAACTTGAGGA+TGG | + | chr5_2:63177077-63177096 | Msa0780980:intron | 30.0% | |
| ! | ACTGGCAAATTTTCTTAAAC+AGG | + | chr5_2:63177228-63177247 | Msa0780980:CDS | 30.0% |
| TGCTAACTTATGTTACCTTA+TGG | + | chr5_2:63177254-63177273 | Msa0780980:intron | 30.0% | |
| TTACCTTATGGTATGCTAAA+AGG | + | chr5_2:63177266-63177285 | Msa0780980:intron | 30.0% | |
| ! | AATCCTTTTAGCATACCATA+AGG | - | chr5_2:63177272-63177291 | None:intergenic | 30.0% |
| TATACTCTCAGCATATGTAA+CGG | - | chr5_2:63177363-63177382 | None:intergenic | 30.0% | |
| TATTTCGTATATACCTTGCT+TGG | - | chr5_2:63177777-63177796 | None:intergenic | 30.0% | |
| AAATATCGAGTAACTCATCA+TGG | - | chr5_2:63178311-63178330 | None:intergenic | 30.0% | |
| GATAAATTTCTCCGATTAAG+TGG | + | chr5_2:63178391-63178410 | Msa0780980:intron | 30.0% | |
| !! | AAAGCATTGTGAAGGATAAA+CGG | - | chr5_2:63178463-63178482 | None:intergenic | 30.0% |
| !! | TTATCTGAAAAGCATTGTGA+AGG | - | chr5_2:63178471-63178490 | None:intergenic | 30.0% |
| ! | ACAATGCTTTTCAGATAACA+AGG | + | chr5_2:63178473-63178492 | Msa0780980:intron | 30.0% |
| ! | CCTTCAAGTTCATATAAATG+TGG | - | chr5_2:63178523-63178542 | None:intergenic | 30.0% |
| CCACATTTATATGAACTTGA+AGG | + | chr5_2:63178520-63178539 | Msa0780980:CDS | 30.0% | |
| GCCAAAAAAGAACTTATTTC+AGG | + | chr5_2:63178646-63178665 | Msa0780980:CDS | 30.0% | |
| TATGTTGAGCATGAAAGTTA+TGG | + | chr5_2:63178724-63178743 | Msa0780980:intron | 30.0% | |
| ! | TAATGCACTTTTCTCTTTTC+AGG | + | chr5_2:63178778-63178797 | Msa0780980:intron | 30.0% |
| CGTAACTTCTAAATCAAATG+TGG | - | chr5_2:63178940-63178959 | None:intergenic | 30.0% | |
| ATTGATGCTCATATACTACT+AGG | - | chr5_2:63179159-63179178 | None:intergenic | 30.0% | |
| !! | CGTCCATTTTATTTCTCATT+TGG | + | chr5_2:63179238-63179257 | Msa0780980:intron | 30.0% |
| TGGCCAAATGAGAAATAAAA+TGG | - | chr5_2:63179244-63179263 | None:intergenic | 30.0% | |
| CTACCTGAAAATATCAAACA+CGG | - | chr5_2:63179488-63179507 | None:intergenic | 30.0% | |
| AGTACATGAATAGATTCAGT+TGG | - | chr5_2:63179540-63179559 | None:intergenic | 30.0% | |
| TCTATTCATGTACTTCATGT+TGG | + | chr5_2:63179546-63179565 | Msa0780980:CDS | 30.0% | |
| TACTTCATGTTGGAAAAATG+AGG | + | chr5_2:63179556-63179575 | Msa0780980:CDS | 30.0% | |
| !!! | TCTTGTTTTCTTTAGCTTTG+TGG | + | chr5_2:63179791-63179810 | Msa0780980:intron | 30.0% |
| !! | ACAAAAGAAAGTCCTTGTTT+TGG | - | chr5_2:63179863-63179882 | None:intergenic | 30.0% |
| ! | ACAAGGACTTTCTTTTGTAT+TGG | + | chr5_2:63179865-63179884 | Msa0780980:CDS | 30.0% |
| TTCATTTACGTTATAGTTGC+TGG | + | chr5_2:63180262-63180281 | Msa0780980:intron | 30.0% | |
| CAATATAACATAACAAGCCA+CGG | - | chr5_2:63180488-63180507 | None:intergenic | 30.0% | |
| GTTATGTTATATTGGTAAGC+TGG | + | chr5_2:63180494-63180513 | Msa0780980:intron | 30.0% | |
| ! | TGGTAATGATTCATATCTTG+TGG | + | chr5_2:63180514-63180533 | Msa0780980:intron | 30.0% |
| ! | TGAGTTGACTAGAGATTTAT+AGG | + | chr5_2:63180602-63180621 | Msa0780980:three_prime_UTR | 30.0% |
| CATATTATAGTGGTTGCAAA+TGG | + | chr5_2:63180628-63180647 | Msa0780980:three_prime_UTR | 30.0% | |
| CAACTTGGTTATTCAACAAC+GGG | - | chr5_2:63175407-63175426 | None:intergenic | 35.0% | |
| GCAACTTGGTTATTCAACAA+CGG | - | chr5_2:63175408-63175427 | None:intergenic | 35.0% | |
| TTGTAGCAGTAGATGCAAAA+GGG | - | chr5_2:63175436-63175455 | None:intergenic | 35.0% | |
| ATTGTAGCAGTAGATGCAAA+AGG | - | chr5_2:63175437-63175456 | None:intergenic | 35.0% | |
| CTATATGATAAGTCCCTGTT+TGG | + | chr5_2:63175939-63175958 | Msa0780980:intron | 35.0% | |
| TATAGGTATGGTTCCACTTT+GGG | - | chr5_2:63176179-63176198 | None:intergenic | 35.0% | |
| !! | TTTTTGTGATTTGTAGAGGG+AGG | + | chr5_2:63176278-63176297 | Msa0780980:intron | 35.0% |
| ! | ATGTGGTATTTGCTACTAGT+CGG | + | chr5_2:63176380-63176399 | Msa0780980:CDS | 35.0% |
| ! | CCCTAAAGTGTTATCTATGA+AGG | + | chr5_2:63176456-63176475 | Msa0780980:CDS | 35.0% |
| CCTTCTCAAATTTACTAGCA+AGG | - | chr5_2:63176543-63176562 | None:intergenic | 35.0% | |
| CCTTGCTAGTAAATTTGAGA+AGG | + | chr5_2:63176540-63176559 | Msa0780980:CDS | 35.0% | |
| TTCATATGCTGGTGAAATTC+AGG | + | chr5_2:63176731-63176750 | Msa0780980:intron | 35.0% | |
| ! | ATTGCTATGGTGAGTTCTTT+TGG | + | chr5_2:63176873-63176892 | Msa0780980:intron | 35.0% |
| TGCTTAAAGAAATTCCGTGA+AGG | + | chr5_2:63176970-63176989 | Msa0780980:intron | 35.0% | |
| TAGCAGTTCAGTTAACTCAA+AGG | + | chr5_2:63177167-63177186 | Msa0780980:CDS | 35.0% | |
| AGCAGTTCAGTTAACTCAAA+GGG | + | chr5_2:63177168-63177187 | Msa0780980:CDS | 35.0% | |
| TTCAGTTAACTCAAAGGGAA+GGG | + | chr5_2:63177173-63177192 | Msa0780980:CDS | 35.0% | |
| ! | GAGAGTATAGATTCATTTGC+AGG | + | chr5_2:63177374-63177393 | Msa0780980:intron | 35.0% |
| !! | TGCTAAGAAACTTGTTGATG+AGG | + | chr5_2:63177407-63177426 | Msa0780980:CDS | 35.0% |
| GTGCAGAAATAGATAATGCT+AGG | + | chr5_2:63177445-63177464 | Msa0780980:CDS | 35.0% | |
| AAAAATACAAACCTGCTTCC+CGG | - | chr5_2:63177529-63177548 | None:intergenic | 35.0% | |
| ATTAATGAAGGAGGTTCAAG+AGG | + | chr5_2:63177725-63177744 | Msa0780980:CDS | 35.0% | |
| !! | GTTGATTGATTTGTAGGTCA+TGG | + | chr5_2:63178019-63178038 | Msa0780980:intron | 35.0% |
| ! | TGATTTGTAGGTCATGGATA+TGG | + | chr5_2:63178025-63178044 | Msa0780980:intron | 35.0% |
| ! | AACATGAACTTCAAGCATTG+AGG | + | chr5_2:63178048-63178067 | Msa0780980:CDS | 35.0% |
| !! | ACATGAACTTCAAGCATTGA+GGG | + | chr5_2:63178049-63178068 | Msa0780980:CDS | 35.0% |
| ACATTATCTTCGACTTCAGA+AGG | + | chr5_2:63178094-63178113 | Msa0780980:CDS | 35.0% | |
| AGTCCATATTCCTATCATTG+AGG | + | chr5_2:63178219-63178238 | Msa0780980:intron | 35.0% | |
| TCTTTGAGCAATGTCTTGAA+CGG | + | chr5_2:63178271-63178290 | Msa0780980:intron | 35.0% | |
| TCACTCACGACAATAAAAAG+TGG | - | chr5_2:63178369-63178388 | None:intergenic | 35.0% | |
| ATGTAACTGCTCCACTTAAT+CGG | - | chr5_2:63178405-63178424 | None:intergenic | 35.0% | |
| CAGATAACAAGGACAAAGAA+AGG | + | chr5_2:63178484-63178503 | Msa0780980:intron | 35.0% | |
| AATTTGCAAATAGGAGCCTA+AGG | - | chr5_2:63178554-63178573 | None:intergenic | 35.0% | |
| GCAAGGTTGAATTTGCAAAT+AGG | - | chr5_2:63178563-63178582 | None:intergenic | 35.0% | |
| CAGAAAATGTTGTCTTCAAC+AGG | - | chr5_2:63178695-63178714 | None:intergenic | 35.0% | |
| AATATTCGTCCGACATCAAA+TGG | - | chr5_2:63178832-63178851 | None:intergenic | 35.0% | |
| ! | TAGTTGAAAGTATGATGTGC+TGG | - | chr5_2:63178879-63178898 | None:intergenic | 35.0% |
| CACATCATACTTTCAACTAC+TGG | + | chr5_2:63178880-63178899 | Msa0780980:CDS | 35.0% | |
| ATGCTCATATACTACTAGGA+GGG | - | chr5_2:63179155-63179174 | None:intergenic | 35.0% | |
| ! | ATGCCGTGTTTGATATTTTC+AGG | + | chr5_2:63179482-63179501 | Msa0780980:intron | 35.0% |
| GTAGTTGTAACACAAATGAG+TGG | + | chr5_2:63179504-63179523 | Msa0780980:CDS | 35.0% | |
| !!! | CATTGATTTTCTCATCTGAC+TGG | - | chr5_2:63180002-63180021 | None:intergenic | 35.0% |
| !! | TAAGTTTTAACAGTGAACCG+TGG | + | chr5_2:63180468-63180487 | Msa0780980:three_prime_UTR | 35.0% |
| !! | CGTGGCTTGTTATGTTATAT+TGG | + | chr5_2:63180486-63180505 | Msa0780980:intron | 35.0% |
| ACTCTCATTGCACTTATCTA+TGG | + | chr5_2:63180694-63180713 | Msa0780980:three_prime_UTR | 35.0% | |
| TTGCACTTATCTATGGACAT+TGG | + | chr5_2:63180701-63180720 | Msa0780980:three_prime_UTR | 35.0% | |
| !! | AAAAGCATCAACAAGACCAG+TGG | + | chr5_2:63175376-63175395 | Msa0780980:five_prime_UTR | 40.0% |
| GAAGATGAAAATGGGTGGTT+AGG | - | chr5_2:63175466-63175485 | None:intergenic | 40.0% | |
| CATGTGAAGATGAAAATGGG+TGG | - | chr5_2:63175471-63175490 | None:intergenic | 40.0% | |
| ! | AATTTTCACTGCTCCCAAAG+TGG | + | chr5_2:63176163-63176182 | Msa0780980:intron | 40.0% |
| GTATAGGTATGGTTCCACTT+TGG | - | chr5_2:63176180-63176199 | None:intergenic | 40.0% | |
| TGGCGATACAATGCAAAAAG+AGG | + | chr5_2:63176336-63176355 | Msa0780980:CDS | 40.0% | |
| TGGAGCTAACGATCAGATAA+TGG | + | chr5_2:63176420-63176439 | Msa0780980:CDS | 40.0% | |
| ! | AGCTAACGATCAGATAATGG+AGG | + | chr5_2:63176423-63176442 | Msa0780980:CDS | 40.0% |
| AAGAAACAAGGATGATGTCG+AGG | + | chr5_2:63176845-63176864 | Msa0780980:CDS | 40.0% | |
| GTTCAGTTAACTCAAAGGGA+AGG | + | chr5_2:63177172-63177191 | Msa0780980:CDS | 40.0% | |
| TCAGTTAACTCAAAGGGAAG+GGG | + | chr5_2:63177174-63177193 | Msa0780980:CDS | 40.0% | |
| AGGGGAACTATTACAAGAGA+AGG | + | chr5_2:63177192-63177211 | Msa0780980:CDS | 40.0% | |
| ACTATTACAAGAGAAGGCAG+AGG | + | chr5_2:63177198-63177217 | Msa0780980:CDS | 40.0% | |
| GAAGGCAGAGGTTAAAAAAC+TGG | + | chr5_2:63177210-63177229 | Msa0780980:CDS | 40.0% | |
| !!! | TTTGGCTTTGTTGGGGTTTT+AGG | + | chr5_2:63177692-63177711 | Msa0780980:intron | 40.0% |
| GGACGTGGAACAATTAATGA+AGG | + | chr5_2:63177713-63177732 | Msa0780980:intron | 40.0% | |
| CGTGGAACAATTAATGAAGG+AGG | + | chr5_2:63177716-63177735 | Msa0780980:CDS | 40.0% | |
| TTCCTCCATAGCGTAGTTAA+TGG | + | chr5_2:63177880-63177899 | Msa0780980:intron | 40.0% | |
| TTCAGCCATTAACTACGCTA+TGG | - | chr5_2:63177888-63177907 | None:intergenic | 40.0% | |
| GAAGAAATCCAATTCCACGT+GGG | - | chr5_2:63177948-63177967 | None:intergenic | 40.0% | |
| AGAAGAAATCCAATTCCACG+TGG | - | chr5_2:63177949-63177968 | None:intergenic | 40.0% | |
| CTGAAGTCGAAGATAATGTC+TGG | - | chr5_2:63178093-63178112 | None:intergenic | 40.0% | |
| TTATCTTCGACTTCAGAAGG+AGG | + | chr5_2:63178097-63178116 | Msa0780980:CDS | 40.0% | |
| CCATTGGCATGAGATTATAC+AGG | - | chr5_2:63178127-63178146 | None:intergenic | 40.0% | |
| CCTGTATAATCTCATGCCAA+TGG | + | chr5_2:63178124-63178143 | Msa0780980:intron | 40.0% | |
| CTGCCTCAATGATAGGAATA+TGG | - | chr5_2:63178225-63178244 | None:intergenic | 40.0% | |
| CAATGTCTTGAACGGTAAGA+TGG | + | chr5_2:63178279-63178298 | Msa0780980:intron | 40.0% | |
| AACAAGGACAAAGAAAGGAG+AGG | + | chr5_2:63178489-63178508 | Msa0780980:CDS | 40.0% | |
| CTTGAAGGGAATGAAACCTT+AGG | + | chr5_2:63178535-63178554 | Msa0780980:CDS | 40.0% | |
| GAAACGATACCTGGATCTAT+TGG | - | chr5_2:63178907-63178926 | None:intergenic | 40.0% | |
| TGACTCAATGAAACGATACC+TGG | - | chr5_2:63178916-63178935 | None:intergenic | 40.0% | |
| !! | AATTGCTTTTATGCAGCTGC+TGG | + | chr5_2:63179041-63179060 | Msa0780980:intron | 40.0% |
| !!! | TTTTATGCAGCTGCTGGTTT+GGG | + | chr5_2:63179047-63179066 | Msa0780980:intron | 40.0% |
| GATGCTCATATACTACTAGG+AGG | - | chr5_2:63179156-63179175 | None:intergenic | 40.0% | |
| ATGAGGATCAAACTCTGCAA+AGG | + | chr5_2:63179573-63179592 | Msa0780980:CDS | 40.0% | |
| !!! | CTATTTTGGCAGCCAAAACA+AGG | + | chr5_2:63179848-63179867 | Msa0780980:CDS | 40.0% |
| ! | CTTTTGAATCAGAGCGAGAA+AGG | + | chr5_2:63179888-63179907 | Msa0780980:CDS | 40.0% |
| AAATCTCCTTGCAAGCATGA+TGG | - | chr5_2:63179921-63179940 | None:intergenic | 40.0% | |
| TGTAAACACATGTGTCACGT+CGG | + | chr5_2:63180195-63180214 | Msa0780980:intron | 40.0% | |
| TCTAGTCAACTCACTCACAA+AGG | - | chr5_2:63180595-63180614 | None:intergenic | 40.0% | |
| TAGAGAGAGAGAGAGAGAGA+GGG | - | chr5_2:63175357-63175376 | None:intergenic | 45.0% | |
| TTAGAGAGAGAGAGAGAGAG+AGG | - | chr5_2:63175358-63175377 | None:intergenic | 45.0% | |
| TAGCAGTAGATGCAAAAGGG+TGG | - | chr5_2:63175433-63175452 | None:intergenic | 45.0% | |
| TGTCACTGCAGAACCAAACA+GGG | - | chr5_2:63175955-63175974 | None:intergenic | 45.0% | |
| TTGTCACTGCAGAACCAAAC+AGG | - | chr5_2:63175956-63175975 | None:intergenic | 45.0% | |
| ! | TTGTGATTTGTAGAGGGAGG+TGG | + | chr5_2:63176281-63176300 | Msa0780980:intron | 45.0% |
| GTGGTTGTAAGAGATGACGA+GGG | + | chr5_2:63176300-63176319 | Msa0780980:exon | 45.0% | |
| ! | ACGAGGGTAACTCGTGATTT+TGG | + | chr5_2:63176316-63176335 | Msa0780980:CDS | 45.0% |
| !! | CGATCAGATAATGGAGGCAA+AGG | + | chr5_2:63176429-63176448 | Msa0780980:CDS | 45.0% |
| GAACTGAGAGACGATTATGC+TGG | - | chr5_2:63176516-63176535 | None:intergenic | 45.0% | |
| ATTTGAGAAGGGTTTGGCTG+CGG | + | chr5_2:63176552-63176571 | Msa0780980:CDS | 45.0% | |
| ACTTAGAGAAGCAGCATCGT+TGG | + | chr5_2:63176758-63176777 | Msa0780980:CDS | 45.0% | |
| ! | TGAATCTTTAAAGGGGCGTG+TGG | + | chr5_2:63176818-63176837 | Msa0780980:CDS | 45.0% |
| TGTCGAGGATGCTATTGCTA+TGG | + | chr5_2:63176860-63176879 | Msa0780980:CDS | 45.0% | |
| GAGAGAATGTCTCAAGCTTC+CGG | + | chr5_2:63177507-63177526 | Msa0780980:CDS | 45.0% | |
| AGAGAATGTCTCAAGCTTCC+GGG | + | chr5_2:63177508-63177527 | Msa0780980:CDS | 45.0% | |
| !!! | TTTGTTGGGGTTTTAGGACG+TGG | + | chr5_2:63177698-63177717 | Msa0780980:intron | 45.0% |
| AGCCATTAACTACGCTATGG+AGG | - | chr5_2:63177885-63177904 | None:intergenic | 45.0% | |
| ATGTCTTTCCCACGTGGAAT+TGG | + | chr5_2:63177937-63177956 | Msa0780980:intron | 45.0% | |
| CATGACACTGCCTCAATGAT+AGG | - | chr5_2:63178232-63178251 | None:intergenic | 45.0% | |
| ! | TCTGGAGCATTATCAGAGCA+AGG | - | chr5_2:63178580-63178599 | None:intergenic | 45.0% |
| !! | TGGTGTCGTGTATCATCTGA+TGG | + | chr5_2:63178622-63178641 | Msa0780980:CDS | 45.0% |
| GCACCTGAACCATTTGATGT+CGG | + | chr5_2:63178820-63178839 | Msa0780980:CDS | 45.0% | |
| ACTACTGGTCCAATAGATCC+AGG | + | chr5_2:63178895-63178914 | Msa0780980:CDS | 45.0% | |
| !! | CTTTTATGCAGCTGCTGGTT+TGG | + | chr5_2:63179046-63179065 | Msa0780980:intron | 45.0% |
| ! | TGGTTTGGGAACCTATGTAG+AGG | + | chr5_2:63179061-63179080 | Msa0780980:CDS | 45.0% |
| TCTCACAAGTGCCTCTACAT+AGG | - | chr5_2:63179075-63179094 | None:intergenic | 45.0% | |
| TTGTAGTTACGTTACGAGCG+CGG | - | chr5_2:63179352-63179371 | None:intergenic | 45.0% | |
| !! | CTTTAGCTTTGTGGAGTTCG+AGG | + | chr5_2:63179800-63179819 | Msa0780980:intron | 45.0% |
| CTGACACACACACACAACAT+CGG | + | chr5_2:63180111-63180130 | Msa0780980:intron | 45.0% | |
| ! | CTTCAGATTGAAGGTGTGTC+TGG | - | chr5_2:63180224-63180243 | None:intergenic | 45.0% |
| ! | ACGTTATAGTTGCTGGCTGT+AGG | + | chr5_2:63180269-63180288 | Msa0780980:intron | 45.0% |
| CAGATGACAGAGCTCCATTA+GGG | + | chr5_2:63180361-63180380 | Msa0780980:CDS | 45.0% | |
| GAGACTCATCATGTCCCTAA+TGG | - | chr5_2:63180378-63180397 | None:intergenic | 45.0% | |
| !! | CTTAAAAAAAAAAAAAAAAA+AGG | - | chr5_2:63176661-63176680 | None:intergenic | 5.0% |
| AGAGAGAGAGAGAGAGAGAG+GGG | - | chr5_2:63175356-63175375 | None:intergenic | 50.0% | |
| TCAACAACGGGAATCACCAC+TGG | - | chr5_2:63175395-63175414 | None:intergenic | 50.0% | |
| GGTGGTTGTAAGAGATGACG+AGG | + | chr5_2:63176299-63176318 | Msa0780980:exon | 50.0% | |
| ACCACATCAGAAGACACTGC+AGG | - | chr5_2:63176367-63176386 | None:intergenic | 50.0% | |
| GCGTGAGACTGCTATGTTGT+TGG | + | chr5_2:63176489-63176508 | Msa0780980:CDS | 50.0% | |
| GGCTGCTAAGTTGTCTGAAG+AGG | + | chr5_2:63176573-63176592 | Msa0780980:CDS | 50.0% | |
| ! | CGATGCTGCTTCTCTAAGTC+TGG | - | chr5_2:63176757-63176776 | None:intergenic | 50.0% |
| ! | ATCTTTAAAGGGGCGTGTGG+CGG | + | chr5_2:63176821-63176840 | Msa0780980:CDS | 50.0% |
| TAGGTCAGCTGTTCAGAGAG+TGG | + | chr5_2:63177464-63177483 | Msa0780980:CDS | 50.0% | |
| AATGCTGCATCAGCCAAGCA+AGG | + | chr5_2:63177761-63177780 | Msa0780980:CDS | 50.0% | |
| ATCGACATGTCTTTCCCACG+TGG | + | chr5_2:63177931-63177950 | Msa0780980:intron | 50.0% | |
| CGTCCGACATCAAATGGTTC+AGG | - | chr5_2:63178826-63178845 | None:intergenic | 50.0% | |
| !! | TAGCTTTGTGGAGTTCGAGG+CGG | + | chr5_2:63179803-63179822 | Msa0780980:intron | 50.0% |
| ATGCAGCCATCATGCTTGCA+AGG | + | chr5_2:63179912-63179931 | Msa0780980:CDS | 50.0% | |
| ! | GCACTGACGCTTCAGATTGA+AGG | - | chr5_2:63180233-63180252 | None:intergenic | 50.0% |
| CCTAATGGAGCTCTGTCATC+TGG | - | chr5_2:63180363-63180382 | None:intergenic | 50.0% | |
| CCAGATGACAGAGCTCCATT+AGG | + | chr5_2:63180360-63180379 | Msa0780980:CDS | 50.0% | |
| GTGCAATGAGAGTGAGACTG+AGG | - | chr5_2:63180687-63180706 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGGGGTA+TGG | - | chr5_2:63175351-63175370 | None:intergenic | 55.0% | |
| GCAAAAGGGTGGCTGCAACT+TGG | - | chr5_2:63175422-63175441 | None:intergenic | 55.0% | |
| GCCTGCAGTGTCTTCTGATG+TGG | + | chr5_2:63176363-63176382 | Msa0780980:CDS | 55.0% | |
| ! | TCTTTAAAGGGGCGTGTGGC+GGG | + | chr5_2:63176822-63176841 | Msa0780980:CDS | 55.0% |
| GAGAGTGGAAGAGTCGCTTC+AGG | + | chr5_2:63177479-63177498 | Msa0780980:CDS | 55.0% | |
| ! | CTGCGGCACAGGCACTATTT+TGG | + | chr5_2:63179834-63179853 | Msa0780980:CDS | 55.0% |
| ! | GCGTGTGGCGGGAAGAAACA+AGG | + | chr5_2:63176833-63176852 | Msa0780980:CDS | 60.0% |
| GTCTCAAGCTTCCGGGAAGC+AGG | + | chr5_2:63177515-63177534 | Msa0780980:CDS | 60.0% | |
| CTTTGTGGAGTTCGAGGCGG+TGG | + | chr5_2:63179806-63179825 | Msa0780980:CDS | 60.0% | |
| TCGAGGCGGTGGAAATGCTG+CGG | + | chr5_2:63179817-63179836 | Msa0780980:CDS | 60.0% | |
| CGGTGGAAATGCTGCGGCAC+AGG | + | chr5_2:63179823-63179842 | Msa0780980:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 63175339 | 63180844 | 63175339 | ID=Msa0780980;Name=Msa0780980 |
| chr5_2 | mRNA | 63175339 | 63180844 | 63175339 | ID=Msa0780980-mRNA-1;Parent=Msa0780980;Name=Msa0780980-mRNA-1;_AED=0.08;_eAED=0.08;_QI=178|1|1|1|0.78|0.66|15|397|494 |
| chr5_2 | exon | 63175339 | 63175497 | 63175339 | ID=Msa0780980-mRNA-1:exon:18739;Parent=Msa0780980-mRNA-1 |
| chr5_2 | exon | 63176294 | 63176594 | 63176294 | ID=Msa0780980-mRNA-1:exon:18740;Parent=Msa0780980-mRNA-1 |
| chr5_2 | exon | 63176753 | 63176881 | 63176753 | ID=Msa0780980-mRNA-1:exon:18741;Parent=Msa0780980-mRNA-1 |
| chr5_2 | exon | 63177157 | 63177249 | 63177157 | ID=Msa0780980-mRNA-1:exon:18742;Parent=Msa0780980-mRNA-1 |
| chr5_2 | exon | 63177396 | 63177536 | 63177396 | ID=Msa0780980-mRNA-1:exon:18743;Parent=Msa0780980-mRNA-1 |
| chr5_2 | exon | 63177714 | 63177782 | 63177714 | ID=Msa0780980-mRNA-1:exon:18744;Parent=Msa0780980-mRNA-1 |
| chr5_2 | exon | 63178035 | 63178118 | 63178035 | ID=Msa0780980-mRNA-1:exon:18745;Parent=Msa0780980-mRNA-1 |
| chr5_2 | exon | 63178487 | 63178667 | 63178487 | ID=Msa0780980-mRNA-1:exon:18746;Parent=Msa0780980-mRNA-1 |
| chr5_2 | exon | 63178800 | 63178916 | 63178800 | ID=Msa0780980-mRNA-1:exon:18747;Parent=Msa0780980-mRNA-1 |
| chr5_2 | exon | 63179057 | 63179115 | 63179057 | ID=Msa0780980-mRNA-1:exon:18748;Parent=Msa0780980-mRNA-1 |
| chr5_2 | exon | 63179504 | 63179638 | 63179504 | ID=Msa0780980-mRNA-1:exon:18749;Parent=Msa0780980-mRNA-1 |
| chr5_2 | exon | 63179806 | 63179955 | 63179806 | ID=Msa0780980-mRNA-1:exon:18750;Parent=Msa0780980-mRNA-1 |
| chr5_2 | exon | 63180345 | 63180494 | 63180345 | ID=Msa0780980-mRNA-1:exon:18751;Parent=Msa0780980-mRNA-1 |
| chr5_2 | exon | 63180516 | 63180775 | 63180516 | ID=Msa0780980-mRNA-1:exon:18752;Parent=Msa0780980-mRNA-1 |
| chr5_2 | exon | 63180813 | 63180844 | 63180813 | ID=Msa0780980-mRNA-1:exon:18753;Parent=Msa0780980-mRNA-1 |
| chr5_2 | five_prime_UTR | 63175339 | 63175497 | 63175339 | ID=Msa0780980-mRNA-1:five_prime_utr;Parent=Msa0780980-mRNA-1 |
| chr5_2 | five_prime_UTR | 63176294 | 63176312 | 63176294 | ID=Msa0780980-mRNA-1:five_prime_utr;Parent=Msa0780980-mRNA-1 |
| chr5_2 | CDS | 63176313 | 63176594 | 63176313 | ID=Msa0780980-mRNA-1:cds;Parent=Msa0780980-mRNA-1 |
| chr5_2 | CDS | 63176753 | 63176881 | 63176753 | ID=Msa0780980-mRNA-1:cds;Parent=Msa0780980-mRNA-1 |
| chr5_2 | CDS | 63177157 | 63177249 | 63177157 | ID=Msa0780980-mRNA-1:cds;Parent=Msa0780980-mRNA-1 |
| chr5_2 | CDS | 63177396 | 63177536 | 63177396 | ID=Msa0780980-mRNA-1:cds;Parent=Msa0780980-mRNA-1 |
| chr5_2 | CDS | 63177714 | 63177782 | 63177714 | ID=Msa0780980-mRNA-1:cds;Parent=Msa0780980-mRNA-1 |
| chr5_2 | CDS | 63178035 | 63178118 | 63178035 | ID=Msa0780980-mRNA-1:cds;Parent=Msa0780980-mRNA-1 |
| chr5_2 | CDS | 63178487 | 63178667 | 63178487 | ID=Msa0780980-mRNA-1:cds;Parent=Msa0780980-mRNA-1 |
| chr5_2 | CDS | 63178800 | 63178916 | 63178800 | ID=Msa0780980-mRNA-1:cds;Parent=Msa0780980-mRNA-1 |
| chr5_2 | CDS | 63179057 | 63179115 | 63179057 | ID=Msa0780980-mRNA-1:cds;Parent=Msa0780980-mRNA-1 |
| chr5_2 | CDS | 63179504 | 63179638 | 63179504 | ID=Msa0780980-mRNA-1:cds;Parent=Msa0780980-mRNA-1 |
| chr5_2 | CDS | 63179806 | 63179955 | 63179806 | ID=Msa0780980-mRNA-1:cds;Parent=Msa0780980-mRNA-1 |
| chr5_2 | CDS | 63180345 | 63180389 | 63180345 | ID=Msa0780980-mRNA-1:cds;Parent=Msa0780980-mRNA-1 |
| chr5_2 | three_prime_UTR | 63180390 | 63180494 | 63180390 | ID=Msa0780980-mRNA-1:three_prime_utr;Parent=Msa0780980-mRNA-1 |
| chr5_2 | three_prime_UTR | 63180516 | 63180775 | 63180516 | ID=Msa0780980-mRNA-1:three_prime_utr;Parent=Msa0780980-mRNA-1 |
| chr5_2 | three_prime_UTR | 63180813 | 63180844 | 63180813 | ID=Msa0780980-mRNA-1:three_prime_utr;Parent=Msa0780980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
