AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0742890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0742890 MtrunA17_Chr5g0442831 97.431 545 14 0 1 545 1 545 0.0 1095
Msa0742890 MtrunA17_Chr5g0409021 91.778 523 34 2 29 545 23 542 0.0 976
Msa0742890 MtrunA17_Chr5g0408991 91.778 523 34 2 29 545 23 542 0.0 976
Msa0742890 MtrunA17_Chr5g0408981 91.778 523 34 2 29 545 23 542 0.0 976
Msa0742890 MtrunA17_Chr5g0409011 91.778 523 34 2 29 545 23 542 0.0 976
Msa0742890 MtrunA17_Chr5g0409001 91.587 523 35 2 29 545 23 542 0.0 975
Msa0742890 MtrunA17_Chr5g0409031 87.659 551 61 2 1 545 1 550 0.0 955
Msa0742890 MtrunA17_Chr5g0407521 84.790 572 55 8 1 545 1 567 0.0 951
Msa0742890 MtrunA17_Chr8g0370001 74.099 583 113 6 1 545 1 583 0.0 862
Msa0742890 MtrunA17_Chr5g0440371 76.426 526 116 2 28 545 40 565 0.0 812
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0742890 AT1G76490.1 72.693 531 128 3 28 541 102 632 0.0 808
Msa0742890 AT2G17370.1 69.886 528 137 3 28 540 34 554 0.0 770

Find 146 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATTATGATTCTATATT+AGG 0.182370 5_1:+62928923 Msa0742890:CDS
TGTAAAGCTATTTATGTTTC+CGG 0.227444 5_1:+62929082 Msa0742890:CDS
TTTCCTGACATGGATGTTAT+TGG 0.259684 5_1:+62929502 Msa0742890:CDS
TGGAGGGATCAGAATATATT+TGG 0.271951 5_1:-62928394 None:intergenic
CAGATTCCGGTGGGTGTTGC+CGG 0.292180 5_1:+62928977 Msa0742890:CDS
CAAGCTGTGGAGAGAGTTAC+TGG 0.312644 5_1:+62928869 Msa0742890:CDS
ATGGATGTTATTGGTATATC+TGG 0.323945 5_1:+62929511 Msa0742890:CDS
CTTAATTTACTTGGTGTTAA+GGG 0.331705 5_1:+62929928 Msa0742890:CDS
AGGATTTCCTGTTGTAGCTT+TGG 0.332478 5_1:-62928722 None:intergenic
TCAGCCATGGCTGGTGCTCT+TGG 0.340875 5_1:+62929697 Msa0742890:CDS
GTTGTTGGTGCAGTGGTGTC+TGG 0.343470 5_1:+62928779 Msa0742890:CDS
ACAGTGAATTCTGCTGCTTT+TGG 0.360301 5_1:-62928433 None:intergenic
GAAGACTAGTGTGGCGTCTT+TGG 0.361120 5_1:+62929642 Msa0742890:CDS
ATCTACCTTACGGCTTTCTT+CGG 0.362086 5_1:+62928623 Msa0742890:CDS
TCTTAATTTACTTGGTGTTA+AGG 0.367100 5_1:+62929927 Msa0742890:CDS
TCGCATACTTTCTTCTTAAC+CGG 0.369945 5_1:+62928513 Msa0742890:CDS
AACATCCATGTCAGGAAAAT+CGG 0.371639 5_1:-62929497 None:intergenic
ATTGAGGTGGGCACAGTTGG+AGG 0.372888 5_1:+62929874 Msa0742890:CDS
AGAAAGCTGCGGCGGTGAAT+TGG 0.374911 5_1:+62929551 Msa0742890:CDS
TATTGTTTCTGCTATTTACT+TGG 0.376885 5_1:+62929744 Msa0742890:CDS
TCCATTGAGGTGGGCACAGT+TGG 0.389581 5_1:+62929871 Msa0742890:CDS
CAATGTTGCGAGATGCCAAT+AGG 0.397291 5_1:+62928947 Msa0742890:CDS
CTCATGTCTGCAATTGCAGC+TGG 0.399313 5_1:+62930033 Msa0742890:CDS
TCTGCTATTTACTTGGCAAC+TGG 0.403532 5_1:+62929751 Msa0742890:CDS
CAAGAATAATAAATTTCAAA+AGG 0.416028 5_1:+62930173 Msa0742890:three_prime_UTR
TTTGTTAAGTAAAGTGAAGA+AGG 0.418114 5_1:-62928461 None:intergenic
AATAGGGTTTGTTCAGATTC+CGG 0.419719 5_1:+62928964 Msa0742890:CDS
GTAGCTGGTTCAGTCCTTGC+AGG 0.419905 5_1:+62930000 Msa0742890:CDS
ACTAGATTCACTTGTTCAAC+GGG 0.423690 5_1:+62929412 Msa0742890:CDS
AGGAGCAAACTCTAGGCTAT+TGG 0.434686 5_1:+62929969 Msa0742890:CDS
CTTCTTCTTCATCGTAATGA+AGG 0.434927 5_1:-62928658 None:intergenic
GCCATGGCTGGTGCTCTTGG+TGG 0.436980 5_1:+62929700 Msa0742890:CDS
AGGGCATTAGTTGAGGGTAT+TGG 0.449454 5_1:+62930193 Msa0742890:three_prime_UTR
TCAGCTTGTCTTAATTTACT+TGG 0.450033 5_1:+62929919 Msa0742890:CDS
TGTTCAACGGGTGATGCAAT+GGG 0.450595 5_1:+62929424 Msa0742890:CDS
TCCATCTCATGAAGCAACTT+TGG 0.453618 5_1:-62930106 None:intergenic
AACTAAACTTAATCAATGTA+TGG 0.454265 5_1:+62930233 Msa0742890:three_prime_UTR
TTCAAAAGGGCATTAGTTGA+GGG 0.455711 5_1:+62930187 Msa0742890:three_prime_UTR
TGCTTGCCTAATCTACCTTA+CGG 0.467337 5_1:+62928613 Msa0742890:CDS
GGAATCTGAACAAACCCTAT+TGG 0.468578 5_1:-62928962 None:intergenic
TACTCGCTTGAATCGAAGCT+TGG 0.474728 5_1:+62928815 Msa0742890:CDS
GACAACTGCGGAAGCACCAC+CGG 0.475138 5_1:-62929101 None:intergenic
ATGGAAGACGAGGAGGTTGT+TGG 0.475572 5_1:+62928764 Msa0742890:CDS
TCCAACTGTGCCCACCTCAA+TGG 0.476267 5_1:-62929872 None:intergenic
GCCGACGTGCTGCTGTGATT+AGG 0.480543 5_1:+62928843 Msa0742890:CDS
AATAGCCTAGAGTTTGCTCC+TGG 0.480778 5_1:-62929967 None:intergenic
CACTAGATTCACTTGTTCAA+CGG 0.483222 5_1:+62929411 Msa0742890:CDS
GTTACTGGAAGGTCACTTGA+AGG 0.484214 5_1:+62928884 Msa0742890:CDS
TTGAGGTGGGCACAGTTGGA+GGG 0.484663 5_1:+62929875 Msa0742890:CDS
AGTATTAAAGCTACTATAGC+AGG 0.485421 5_1:+62929376 Msa0742890:CDS
AAAGGACCGGCAACACCCAC+CGG 0.486844 5_1:-62928983 None:intergenic
TGAGGTGGGCACAGTTGGAG+GGG 0.493167 5_1:+62929876 Msa0742890:CDS
GCATTAGTTGAGGGTATTGG+TGG 0.494023 5_1:+62930196 Msa0742890:three_prime_UTR
GAGATGGAATCAAAATTTAG+AGG 0.495960 5_1:-62929208 None:intergenic
CATGGAGAGGTGTAGAGGTT+CGG 0.496244 5_1:-62928550 None:intergenic
TTTCAAAAGGGCATTAGTTG+AGG 0.496313 5_1:+62930186 Msa0742890:three_prime_UTR
TTGTTCAACGGGTGATGCAA+TGG 0.497983 5_1:+62929423 Msa0742890:CDS
AATGTTGCGAGATGCCAATA+GGG 0.503985 5_1:+62928948 Msa0742890:CDS
CAACCTTCAGTGGTTGCCAT+TGG 0.505213 5_1:-62929034 None:intergenic
AGTCAATCCAAAGCTACAAC+AGG 0.505657 5_1:+62928715 Msa0742890:CDS
TCCGCAGTTGTCCTTCGTGA+TGG 0.511896 5_1:+62929112 Msa0742890:CDS
AATAGCTTTACAACCTCTGT+TGG 0.514525 5_1:-62929071 None:intergenic
TCAATGTATGGTCCATGCCA+TGG 0.514913 5_1:+62930245 Msa0742890:three_prime_UTR
TAGATCTGTTGTATTTCATG+TGG 0.514983 5_1:-62930071 None:intergenic
GTAGATTAGGCAAGCAATGA+GGG 0.515002 5_1:-62928606 None:intergenic
CACTATGCCTTCCATTGAGG+TGG 0.515478 5_1:+62929861 Msa0742890:CDS
AAGAATAATAAATTTCAAAA+GGG 0.520078 5_1:+62930174 Msa0742890:three_prime_UTR
GGGATGAACATGGTATCAAA+AGG 0.522120 5_1:+62929445 Msa0742890:CDS
GCCGGTCCTTTGTTGCTCGA+TGG 0.525821 5_1:+62928995 Msa0742890:CDS
GAGGTGGGCACAGTTGGAGG+GGG 0.525880 5_1:+62929877 Msa0742890:CDS
ACCAAAGTTGCTTCATGAGA+TGG 0.525979 5_1:+62930105 Msa0742890:exon
CTTACTGGTTCAGCCATGGC+TGG 0.527929 5_1:+62929688 Msa0742890:CDS
GCGGCGGTGAATTGGATTGA+AGG 0.530179 5_1:+62929559 Msa0742890:CDS
CAGTAACTCTCTCCACAGCT+TGG 0.536806 5_1:-62928868 None:intergenic
GCATAGTGACTGAGATATGA+AGG 0.538116 5_1:-62929846 None:intergenic
GCCACCAAGAGCACCAGCCA+TGG 0.539071 5_1:-62929701 None:intergenic
CTATTGGCAACTATAGTAGC+TGG 0.539688 5_1:+62929985 Msa0742890:CDS
ATCATTAACAGCTTCCATCA+TGG 0.543666 5_1:-62929815 None:intergenic
TTGTAGCTTTGGATTGACTT+CGG 0.543867 5_1:-62928711 None:intergenic
AGACTCCAGGAGCAAACTCT+AGG 0.544017 5_1:+62929962 Msa0742890:CDS
ATACCAATAACATCCATGTC+AGG 0.544139 5_1:-62929505 None:intergenic
CTTGAAGGTTTACCAATGGA+AGG 0.548186 5_1:+62928899 Msa0742890:CDS
GTCACTTGAAGGTTTACCAA+TGG 0.549038 5_1:+62928895 Msa0742890:CDS
TGCAACTAAACAACCTTCAG+TGG 0.550714 5_1:-62929044 None:intergenic
TCATAATCAAAACCTTCCAT+TGG 0.551011 5_1:-62928911 None:intergenic
TTCAGTGGTTGCCATTGGCA+CGG 0.554461 5_1:-62929029 None:intergenic
CTTGTTGAATGTATGAGAGA+TGG 0.555113 5_1:-62929224 None:intergenic
AGAAAGCCGTAAGGTAGATT+AGG 0.556089 5_1:-62928619 None:intergenic
GCGGAGTTGAATCTTACGAC+GGG 0.556400 5_1:-62929148 None:intergenic
AAATCTTACTGGTTCAGCCA+TGG 0.557583 5_1:+62929684 Msa0742890:CDS
TTCATCGTAATGAAGGATGA+AGG 0.561519 5_1:-62928651 None:intergenic
CAATGTATGGTCCATGCCAT+GGG 0.561809 5_1:+62930246 Msa0742890:three_prime_UTR
GGAAACTAGAGCGAGAATCT+CGG 0.563787 5_1:-62928585 None:intergenic
ACCATCGAGCAACAAAGGAC+CGG 0.565288 5_1:-62928996 None:intergenic
GTGCCAATGGCAACCACTGA+AGG 0.569007 5_1:+62929031 Msa0742890:CDS
AAGGTTATTTATCTCACACT+TGG 0.577312 5_1:-62930139 None:intergenic
CATTAGTTGAGGGTATTGGT+GGG 0.579388 5_1:+62930197 Msa0742890:three_prime_UTR
CGAGGCTGTAATTAAAGAAG+AGG 0.579510 5_1:+62929603 Msa0742890:CDS
AGTCACTATGCCTTCCATTG+AGG 0.579598 5_1:+62929858 Msa0742890:CDS
TCTCGGAGATTGTGAGGACA+TGG 0.580902 5_1:-62928568 None:intergenic
TTCTCATTGTATGACCATGA+TGG 0.582723 5_1:+62929801 Msa0742890:CDS
TAAAGAATACACCGTGCCAA+TGG 0.585969 5_1:+62929018 Msa0742890:CDS
TCATGTCTGCAATTGCAGCT+GGG 0.586024 5_1:+62930034 Msa0742890:CDS
GGAGCTAGTAAAGAGACTCC+AGG 0.592509 5_1:+62929949 Msa0742890:CDS
TATTCTTGATGATAGATGCA+AGG 0.593545 5_1:-62930158 None:intergenic
GGTAGATTAGGCAAGCAATG+AGG 0.594727 5_1:-62928607 None:intergenic
CGAGAATCTCGGAGATTGTG+AGG 0.594968 5_1:-62928574 None:intergenic
TTCGATTCAAGCGAGTAAGA+TGG 0.597340 5_1:-62928809 None:intergenic
CGGCGGTGAATTGGATTGAA+GGG 0.597484 5_1:+62929560 Msa0742890:CDS
CATACTTTCTTCTTAACCGG+TGG 0.598139 5_1:+62928516 Msa0742890:CDS
TCTTTACCATCGAGCAACAA+AGG 0.602437 5_1:-62929001 None:intergenic
AGGGTTTGTTCAGATTCCGG+TGG 0.604995 5_1:+62928967 Msa0742890:CDS
AGGTAAATCAGTGGTGTGCG+AGG 0.607376 5_1:+62929585 Msa0742890:CDS
CGAGGAGGTTGTTGGTGCAG+TGG 0.607705 5_1:+62928772 Msa0742890:CDS
ACTGTGCCCACCTCAATGGA+AGG 0.609074 5_1:-62929868 None:intergenic
GGCTGTAATTAAAGAAGAGG+TGG 0.610180 5_1:+62929606 Msa0742890:CDS
ATGATGGAAGCTGTTAATGA+TGG 0.618580 5_1:+62929817 Msa0742890:CDS
TGAGTGAGAGCTCTCCTGCA+AGG 0.619208 5_1:-62930014 None:intergenic
GGGTTTGTTCAGATTCCGGT+GGG 0.619817 5_1:+62928968 Msa0742890:CDS
TGATGCAATGGGGATGAACA+TGG 0.620753 5_1:+62929435 Msa0742890:CDS
GAGGACATGGAGAGGTGTAG+AGG 0.622809 5_1:-62928555 None:intergenic
TAGCTTTGGATTGACTTCGG+TGG 0.623108 5_1:-62928708 None:intergenic
GTGAATTGGATTGAAGGGAG+AGG 0.624405 5_1:+62929565 Msa0742890:CDS
TTGAGATAGATATGATCCCA+TGG 0.625851 5_1:-62930262 None:intergenic
ATAGATATGATCCCATGGCA+TGG 0.625976 5_1:-62930257 None:intergenic
ACTATGCCTTCCATTGAGGT+GGG 0.631117 5_1:+62929862 Msa0742890:CDS
TTCGGACAAGAAAGCTGCGG+CGG 0.638658 5_1:+62929543 Msa0742890:CDS
GGAAGCTGTTAATGATGGCA+AGG 0.638837 5_1:+62929822 Msa0742890:CDS
AGCGGAGTTGAATCTTACGA+CGG 0.639019 5_1:-62929149 None:intergenic
AAAGCTATTTATGTTTCCGG+TGG 0.639838 5_1:+62929085 Msa0742890:CDS
CAACGCCGAAGAAAGCCGTA+AGG 0.645978 5_1:-62928628 None:intergenic
CGGAGTTGAATCTTACGACG+GGG 0.648586 5_1:-62929147 None:intergenic
CTGTGGAGAGAGTTACTGGA+AGG 0.651029 5_1:+62928873 Msa0742890:CDS
TTTGTCGATGGAAGACGAGG+AGG 0.653554 5_1:+62928757 Msa0742890:CDS
GAGATTGTGAGGACATGGAG+AGG 0.663075 5_1:-62928563 None:intergenic
TTGTTCGGACAAGAAAGCTG+CGG 0.664622 5_1:+62929540 Msa0742890:CDS
CTCTGGTCATTCCATCACGA+AGG 0.665834 5_1:-62929123 None:intergenic
TTAGTTGCAAGTACCAACAG+AGG 0.672341 5_1:+62929058 Msa0742890:CDS
TGAAGGGAGAGGTAAATCAG+TGG 0.678039 5_1:+62929576 Msa0742890:CDS
TGTGATTAGGAACCAAGCTG+TGG 0.697808 5_1:+62928856 Msa0742890:CDS
TCCTAATCACAGCAGCACGT+CGG 0.698785 5_1:-62928844 None:intergenic
GTTAAGAAGAAAGTATGCGA+CGG 0.701089 5_1:-62928510 None:intergenic
GGAGTTGAATCTTACGACGG+GGG 0.723640 5_1:-62929146 None:intergenic
GAAAGTGTTGAAGACTAGTG+TGG 0.728459 5_1:+62929633 Msa0742890:CDS
TCCATCACGAAGGACAACTG+CGG 0.734942 5_1:-62929113 None:intergenic
GTTCAACGGGTGATGCAATG+GGG 0.750923 5_1:+62929425 Msa0742890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAATAATAAATTTCAAAA+GGG + chr5_1:62930174-62930193 Msa0742890:three_prime_UTR 10.0%
!! AAGAATAATAAATTTCAAAA+GGG + chr5_1:62930174-62930193 Msa0742890:three_prime_UTR 10.0%
!! TTTGATTATGATTCTATATT+AGG + chr5_1:62928923-62928942 Msa0742890:CDS 15.0%
!! CAAGAATAATAAATTTCAAA+AGG + chr5_1:62930173-62930192 Msa0742890:three_prime_UTR 15.0%
!! TTTGATTATGATTCTATATT+AGG + chr5_1:62928923-62928942 Msa0742890:CDS 15.0%
!! CAAGAATAATAAATTTCAAA+AGG + chr5_1:62930173-62930192 Msa0742890:three_prime_UTR 15.0%
!!! TTAACAAACACTTTTTTCTT+CGG + chr5_1:62928476-62928495 Msa0742890:CDS 20.0%
!!! TTTTGTTGAAATAACTCATT+TGG + chr5_1:62929294-62929313 Msa0742890:intron 20.0%
!!! GATAATTAATTGATTCTGTT+TGG + chr5_1:62929316-62929335 Msa0742890:intron 20.0%
!! TTCTGTTTGGATATATATTT+AGG + chr5_1:62929329-62929348 Msa0742890:intron 20.0%
!!! TATATCTGGAAATTTTTGTT+CGG + chr5_1:62929525-62929544 Msa0742890:CDS 20.0%
!! AACTAAACTTAATCAATGTA+TGG + chr5_1:62930233-62930252 Msa0742890:three_prime_UTR 20.0%
!!! TTAACAAACACTTTTTTCTT+CGG + chr5_1:62928476-62928495 Msa0742890:CDS 20.0%
!!! TTTTGTTGAAATAACTCATT+TGG + chr5_1:62929294-62929313 Msa0742890:intron 20.0%
!!! GATAATTAATTGATTCTGTT+TGG + chr5_1:62929316-62929335 Msa0742890:intron 20.0%
!! TTCTGTTTGGATATATATTT+AGG + chr5_1:62929329-62929348 Msa0742890:intron 20.0%
!!! TATATCTGGAAATTTTTGTT+CGG + chr5_1:62929525-62929544 Msa0742890:CDS 20.0%
!! AACTAAACTTAATCAATGTA+TGG + chr5_1:62930233-62930252 Msa0742890:three_prime_UTR 20.0%
! TTTGTTAAGTAAAGTGAAGA+AGG - chr5_1:62928464-62928483 None:intergenic 25.0%
! TGTAAAGCTATTTATGTTTC+CGG + chr5_1:62929082-62929101 Msa0742890:CDS 25.0%
!! TTCTCAGTTGAAATTCTTTT+TGG + chr5_1:62929180-62929199 Msa0742890:CDS 25.0%
! AACATGCTTAAAAATCTTAC+TGG + chr5_1:62929673-62929692 Msa0742890:CDS 25.0%
!!! TATTGTTTCTGCTATTTACT+TGG + chr5_1:62929744-62929763 Msa0742890:CDS 25.0%
!!! TCTTAATTTACTTGGTGTTA+AGG + chr5_1:62929927-62929946 Msa0742890:CDS 25.0%
!!! CTTAATTTACTTGGTGTTAA+GGG + chr5_1:62929928-62929947 Msa0742890:CDS 25.0%
! TTTGTTAAGTAAAGTGAAGA+AGG - chr5_1:62928464-62928483 None:intergenic 25.0%
! TGTAAAGCTATTTATGTTTC+CGG + chr5_1:62929082-62929101 Msa0742890:CDS 25.0%
!! TTCTCAGTTGAAATTCTTTT+TGG + chr5_1:62929180-62929199 Msa0742890:CDS 25.0%
! AACATGCTTAAAAATCTTAC+TGG + chr5_1:62929673-62929692 Msa0742890:CDS 25.0%
!!! TATTGTTTCTGCTATTTACT+TGG + chr5_1:62929744-62929763 Msa0742890:CDS 25.0%
!!! TCTTAATTTACTTGGTGTTA+AGG + chr5_1:62929927-62929946 Msa0742890:CDS 25.0%
!!! CTTAATTTACTTGGTGTTAA+GGG + chr5_1:62929928-62929947 Msa0742890:CDS 25.0%
! TCGACAAAACTTTTTGAACA+AGG - chr5_1:62928745-62928764 None:intergenic 30.0%
!! TGTTCAAAAAGTTTTGTCGA+TGG + chr5_1:62928745-62928764 Msa0742890:CDS 30.0%
TCATAATCAAAACCTTCCAT+TGG - chr5_1:62928914-62928933 None:intergenic 30.0%
GAGATGGAATCAAAATTTAG+AGG - chr5_1:62929211-62929230 None:intergenic 30.0%
AGTATTAAAGCTACTATAGC+AGG + chr5_1:62929376-62929395 Msa0742890:CDS 30.0%
ATGGATGTTATTGGTATATC+TGG + chr5_1:62929511-62929530 Msa0742890:CDS 30.0%
TCAGCTTGTCTTAATTTACT+TGG + chr5_1:62929919-62929938 Msa0742890:CDS 30.0%
TAGATCTGTTGTATTTCATG+TGG - chr5_1:62930074-62930093 None:intergenic 30.0%
AAGGTTATTTATCTCACACT+TGG - chr5_1:62930142-62930161 None:intergenic 30.0%
! TATTCTTGATGATAGATGCA+AGG - chr5_1:62930161-62930180 None:intergenic 30.0%
! TCGACAAAACTTTTTGAACA+AGG - chr5_1:62928745-62928764 None:intergenic 30.0%
!! TGTTCAAAAAGTTTTGTCGA+TGG + chr5_1:62928745-62928764 Msa0742890:CDS 30.0%
TCATAATCAAAACCTTCCAT+TGG - chr5_1:62928914-62928933 None:intergenic 30.0%
GAGATGGAATCAAAATTTAG+AGG - chr5_1:62929211-62929230 None:intergenic 30.0%
AGTATTAAAGCTACTATAGC+AGG + chr5_1:62929376-62929395 Msa0742890:CDS 30.0%
ATGGATGTTATTGGTATATC+TGG + chr5_1:62929511-62929530 Msa0742890:CDS 30.0%
TCAGCTTGTCTTAATTTACT+TGG + chr5_1:62929919-62929938 Msa0742890:CDS 30.0%
TAGATCTGTTGTATTTCATG+TGG - chr5_1:62930074-62930093 None:intergenic 30.0%
AAGGTTATTTATCTCACACT+TGG - chr5_1:62930142-62930161 None:intergenic 30.0%
! TATTCTTGATGATAGATGCA+AGG - chr5_1:62930161-62930180 None:intergenic 30.0%
TGGAGGGATCAGAATATATT+TGG - chr5_1:62928397-62928416 None:intergenic 35.0%
!!! TTCTTCTTTGTTTTGCTGGA+GGG - chr5_1:62928413-62928432 None:intergenic 35.0%
!!! TTGGTTCTTCTTTGTTTTGC+TGG - chr5_1:62928417-62928436 None:intergenic 35.0%
! GTTAAGAAGAAAGTATGCGA+CGG - chr5_1:62928513-62928532 None:intergenic 35.0%
TCGCATACTTTCTTCTTAAC+CGG + chr5_1:62928513-62928532 Msa0742890:CDS 35.0%
TTCATCGTAATGAAGGATGA+AGG - chr5_1:62928654-62928673 None:intergenic 35.0%
CTTCTTCTTCATCGTAATGA+AGG - chr5_1:62928661-62928680 None:intergenic 35.0%
!! TTGTAGCTTTGGATTGACTT+CGG - chr5_1:62928714-62928733 None:intergenic 35.0%
! AATAGGGTTTGTTCAGATTC+CGG + chr5_1:62928964-62928983 Msa0742890:CDS 35.0%
! AATAGCTTTACAACCTCTGT+TGG - chr5_1:62929074-62929093 None:intergenic 35.0%
AAAGCTATTTATGTTTCCGG+TGG + chr5_1:62929085-62929104 Msa0742890:CDS 35.0%
CTTGTTGAATGTATGAGAGA+TGG - chr5_1:62929227-62929246 None:intergenic 35.0%
CACTAGATTCACTTGTTCAA+CGG + chr5_1:62929411-62929430 Msa0742890:CDS 35.0%
ACTAGATTCACTTGTTCAAC+GGG + chr5_1:62929412-62929431 Msa0742890:CDS 35.0%
AACATCCATGTCAGGAAAAT+CGG - chr5_1:62929500-62929519 None:intergenic 35.0%
TTTCCTGACATGGATGTTAT+TGG + chr5_1:62929502-62929521 Msa0742890:CDS 35.0%
ATACCAATAACATCCATGTC+AGG - chr5_1:62929508-62929527 None:intergenic 35.0%
TTCTCATTGTATGACCATGA+TGG + chr5_1:62929801-62929820 Msa0742890:CDS 35.0%
ATCATTAACAGCTTCCATCA+TGG - chr5_1:62929818-62929837 None:intergenic 35.0%
! ATGATGGAAGCTGTTAATGA+TGG + chr5_1:62929817-62929836 Msa0742890:CDS 35.0%
!! TTTCAAAAGGGCATTAGTTG+AGG + chr5_1:62930186-62930205 Msa0742890:three_prime_UTR 35.0%
!! TTCAAAAGGGCATTAGTTGA+GGG + chr5_1:62930187-62930206 Msa0742890:three_prime_UTR 35.0%
TTGAGATAGATATGATCCCA+TGG - chr5_1:62930265-62930284 None:intergenic 35.0%
TGGAGGGATCAGAATATATT+TGG - chr5_1:62928397-62928416 None:intergenic 35.0%
!!! TTCTTCTTTGTTTTGCTGGA+GGG - chr5_1:62928413-62928432 None:intergenic 35.0%
!!! TTGGTTCTTCTTTGTTTTGC+TGG - chr5_1:62928417-62928436 None:intergenic 35.0%
! GTTAAGAAGAAAGTATGCGA+CGG - chr5_1:62928513-62928532 None:intergenic 35.0%
TCGCATACTTTCTTCTTAAC+CGG + chr5_1:62928513-62928532 Msa0742890:CDS 35.0%
TTCATCGTAATGAAGGATGA+AGG - chr5_1:62928654-62928673 None:intergenic 35.0%
CTTCTTCTTCATCGTAATGA+AGG - chr5_1:62928661-62928680 None:intergenic 35.0%
!! TTGTAGCTTTGGATTGACTT+CGG - chr5_1:62928714-62928733 None:intergenic 35.0%
! AATAGGGTTTGTTCAGATTC+CGG + chr5_1:62928964-62928983 Msa0742890:CDS 35.0%
! AATAGCTTTACAACCTCTGT+TGG - chr5_1:62929074-62929093 None:intergenic 35.0%
AAAGCTATTTATGTTTCCGG+TGG + chr5_1:62929085-62929104 Msa0742890:CDS 35.0%
CTTGTTGAATGTATGAGAGA+TGG - chr5_1:62929227-62929246 None:intergenic 35.0%
CACTAGATTCACTTGTTCAA+CGG + chr5_1:62929411-62929430 Msa0742890:CDS 35.0%
ACTAGATTCACTTGTTCAAC+GGG + chr5_1:62929412-62929431 Msa0742890:CDS 35.0%
AACATCCATGTCAGGAAAAT+CGG - chr5_1:62929500-62929519 None:intergenic 35.0%
TTTCCTGACATGGATGTTAT+TGG + chr5_1:62929502-62929521 Msa0742890:CDS 35.0%
ATACCAATAACATCCATGTC+AGG - chr5_1:62929508-62929527 None:intergenic 35.0%
TTCTCATTGTATGACCATGA+TGG + chr5_1:62929801-62929820 Msa0742890:CDS 35.0%
ATCATTAACAGCTTCCATCA+TGG - chr5_1:62929818-62929837 None:intergenic 35.0%
! ATGATGGAAGCTGTTAATGA+TGG + chr5_1:62929817-62929836 Msa0742890:CDS 35.0%
!! TTTCAAAAGGGCATTAGTTG+AGG + chr5_1:62930186-62930205 Msa0742890:three_prime_UTR 35.0%
!! TTCAAAAGGGCATTAGTTGA+GGG + chr5_1:62930187-62930206 Msa0742890:three_prime_UTR 35.0%
TTGAGATAGATATGATCCCA+TGG - chr5_1:62930265-62930284 None:intergenic 35.0%
!!! GTTCTTCTTTGTTTTGCTGG+AGG - chr5_1:62928414-62928433 None:intergenic 40.0%
!!! ACAGTGAATTCTGCTGCTTT+TGG - chr5_1:62928436-62928455 None:intergenic 40.0%
CATACTTTCTTCTTAACCGG+TGG + chr5_1:62928516-62928535 Msa0742890:CDS 40.0%
GTAGATTAGGCAAGCAATGA+GGG - chr5_1:62928609-62928628 None:intergenic 40.0%
TGCTTGCCTAATCTACCTTA+CGG + chr5_1:62928613-62928632 Msa0742890:CDS 40.0%
AGAAAGCCGTAAGGTAGATT+AGG - chr5_1:62928622-62928641 None:intergenic 40.0%
ATCTACCTTACGGCTTTCTT+CGG + chr5_1:62928623-62928642 Msa0742890:CDS 40.0%
AGTCAATCCAAAGCTACAAC+AGG + chr5_1:62928715-62928734 Msa0742890:CDS 40.0%
AGGATTTCCTGTTGTAGCTT+TGG - chr5_1:62928725-62928744 None:intergenic 40.0%
TTCGATTCAAGCGAGTAAGA+TGG - chr5_1:62928812-62928831 None:intergenic 40.0%
GTCACTTGAAGGTTTACCAA+TGG + chr5_1:62928895-62928914 Msa0742890:CDS 40.0%
CTTGAAGGTTTACCAATGGA+AGG + chr5_1:62928899-62928918 Msa0742890:CDS 40.0%
AATGTTGCGAGATGCCAATA+GGG + chr5_1:62928948-62928967 Msa0742890:CDS 40.0%
GGAATCTGAACAAACCCTAT+TGG - chr5_1:62928965-62928984 None:intergenic 40.0%
TCTTTACCATCGAGCAACAA+AGG - chr5_1:62929004-62929023 None:intergenic 40.0%
TAAAGAATACACCGTGCCAA+TGG + chr5_1:62929018-62929037 Msa0742890:CDS 40.0%
TGCAACTAAACAACCTTCAG+TGG - chr5_1:62929047-62929066 None:intergenic 40.0%
TTAGTTGCAAGTACCAACAG+AGG + chr5_1:62929058-62929077 Msa0742890:CDS 40.0%
! CAACTGAGAAGCTCTTTTAG+CGG - chr5_1:62929170-62929189 None:intergenic 40.0%
GGGATGAACATGGTATCAAA+AGG + chr5_1:62929445-62929464 Msa0742890:CDS 40.0%
!! TCAAACCGATTTTCCTGACA+TGG + chr5_1:62929492-62929511 Msa0742890:CDS 40.0%
CGAGGCTGTAATTAAAGAAG+AGG + chr5_1:62929603-62929622 Msa0742890:CDS 40.0%
GGCTGTAATTAAAGAAGAGG+TGG + chr5_1:62929606-62929625 Msa0742890:CDS 40.0%
!! GAAAGTGTTGAAGACTAGTG+TGG + chr5_1:62929633-62929652 Msa0742890:CDS 40.0%
!! AAATCTTACTGGTTCAGCCA+TGG + chr5_1:62929684-62929703 Msa0742890:CDS 40.0%
! TCTGCTATTTACTTGGCAAC+TGG + chr5_1:62929751-62929770 Msa0742890:CDS 40.0%
! GAACTCTCAACATTTTGAGC+AGG - chr5_1:62929784-62929803 None:intergenic 40.0%
GCATAGTGACTGAGATATGA+AGG - chr5_1:62929849-62929868 None:intergenic 40.0%
CTATTGGCAACTATAGTAGC+TGG + chr5_1:62929985-62930004 Msa0742890:CDS 40.0%
ACCAAAGTTGCTTCATGAGA+TGG + chr5_1:62930105-62930124 Msa0742890:exon 40.0%
TCCATCTCATGAAGCAACTT+TGG - chr5_1:62930109-62930128 None:intergenic 40.0%
!! CATTAGTTGAGGGTATTGGT+GGG + chr5_1:62930197-62930216 Msa0742890:three_prime_UTR 40.0%
ATAGATATGATCCCATGGCA+TGG - chr5_1:62930260-62930279 None:intergenic 40.0%
!!! GTTCTTCTTTGTTTTGCTGG+AGG - chr5_1:62928414-62928433 None:intergenic 40.0%
!!! ACAGTGAATTCTGCTGCTTT+TGG - chr5_1:62928436-62928455 None:intergenic 40.0%
CATACTTTCTTCTTAACCGG+TGG + chr5_1:62928516-62928535 Msa0742890:CDS 40.0%
GTAGATTAGGCAAGCAATGA+GGG - chr5_1:62928609-62928628 None:intergenic 40.0%
TGCTTGCCTAATCTACCTTA+CGG + chr5_1:62928613-62928632 Msa0742890:CDS 40.0%
AGAAAGCCGTAAGGTAGATT+AGG - chr5_1:62928622-62928641 None:intergenic 40.0%
ATCTACCTTACGGCTTTCTT+CGG + chr5_1:62928623-62928642 Msa0742890:CDS 40.0%
AGTCAATCCAAAGCTACAAC+AGG + chr5_1:62928715-62928734 Msa0742890:CDS 40.0%
AGGATTTCCTGTTGTAGCTT+TGG - chr5_1:62928725-62928744 None:intergenic 40.0%
TTCGATTCAAGCGAGTAAGA+TGG - chr5_1:62928812-62928831 None:intergenic 40.0%
GTCACTTGAAGGTTTACCAA+TGG + chr5_1:62928895-62928914 Msa0742890:CDS 40.0%
CTTGAAGGTTTACCAATGGA+AGG + chr5_1:62928899-62928918 Msa0742890:CDS 40.0%
AATGTTGCGAGATGCCAATA+GGG + chr5_1:62928948-62928967 Msa0742890:CDS 40.0%
GGAATCTGAACAAACCCTAT+TGG - chr5_1:62928965-62928984 None:intergenic 40.0%
TCTTTACCATCGAGCAACAA+AGG - chr5_1:62929004-62929023 None:intergenic 40.0%
TAAAGAATACACCGTGCCAA+TGG + chr5_1:62929018-62929037 Msa0742890:CDS 40.0%
TGCAACTAAACAACCTTCAG+TGG - chr5_1:62929047-62929066 None:intergenic 40.0%
TTAGTTGCAAGTACCAACAG+AGG + chr5_1:62929058-62929077 Msa0742890:CDS 40.0%
! CAACTGAGAAGCTCTTTTAG+CGG - chr5_1:62929170-62929189 None:intergenic 40.0%
GGGATGAACATGGTATCAAA+AGG + chr5_1:62929445-62929464 Msa0742890:CDS 40.0%
!! TCAAACCGATTTTCCTGACA+TGG + chr5_1:62929492-62929511 Msa0742890:CDS 40.0%
CGAGGCTGTAATTAAAGAAG+AGG + chr5_1:62929603-62929622 Msa0742890:CDS 40.0%
GGCTGTAATTAAAGAAGAGG+TGG + chr5_1:62929606-62929625 Msa0742890:CDS 40.0%
!! GAAAGTGTTGAAGACTAGTG+TGG + chr5_1:62929633-62929652 Msa0742890:CDS 40.0%
!! AAATCTTACTGGTTCAGCCA+TGG + chr5_1:62929684-62929703 Msa0742890:CDS 40.0%
! TCTGCTATTTACTTGGCAAC+TGG + chr5_1:62929751-62929770 Msa0742890:CDS 40.0%
! GAACTCTCAACATTTTGAGC+AGG - chr5_1:62929784-62929803 None:intergenic 40.0%
GCATAGTGACTGAGATATGA+AGG - chr5_1:62929849-62929868 None:intergenic 40.0%
CTATTGGCAACTATAGTAGC+TGG + chr5_1:62929985-62930004 Msa0742890:CDS 40.0%
ACCAAAGTTGCTTCATGAGA+TGG + chr5_1:62930105-62930124 Msa0742890:exon 40.0%
TCCATCTCATGAAGCAACTT+TGG - chr5_1:62930109-62930128 None:intergenic 40.0%
!! CATTAGTTGAGGGTATTGGT+GGG + chr5_1:62930197-62930216 Msa0742890:three_prime_UTR 40.0%
ATAGATATGATCCCATGGCA+TGG - chr5_1:62930260-62930279 None:intergenic 40.0%
GGAAACTAGAGCGAGAATCT+CGG - chr5_1:62928588-62928607 None:intergenic 45.0%
GGTAGATTAGGCAAGCAATG+AGG - chr5_1:62928610-62928629 None:intergenic 45.0%
!! TAGCTTTGGATTGACTTCGG+TGG - chr5_1:62928711-62928730 None:intergenic 45.0%
!! AGTTTTGTCGATGGAAGACG+AGG + chr5_1:62928754-62928773 Msa0742890:CDS 45.0%
TACTCGCTTGAATCGAAGCT+TGG + chr5_1:62928815-62928834 Msa0742890:CDS 45.0%
TGTGATTAGGAACCAAGCTG+TGG + chr5_1:62928856-62928875 Msa0742890:CDS 45.0%
GTTACTGGAAGGTCACTTGA+AGG + chr5_1:62928884-62928903 Msa0742890:CDS 45.0%
CAATGTTGCGAGATGCCAAT+AGG + chr5_1:62928947-62928966 Msa0742890:CDS 45.0%
AGCGGAGTTGAATCTTACGA+CGG - chr5_1:62929152-62929171 None:intergenic 45.0%
TTGTTCAACGGGTGATGCAA+TGG + chr5_1:62929423-62929442 Msa0742890:CDS 45.0%
TGTTCAACGGGTGATGCAAT+GGG + chr5_1:62929424-62929443 Msa0742890:CDS 45.0%
TGATGCAATGGGGATGAACA+TGG + chr5_1:62929435-62929454 Msa0742890:CDS 45.0%
TTGTTCGGACAAGAAAGCTG+CGG + chr5_1:62929540-62929559 Msa0742890:CDS 45.0%
GTGAATTGGATTGAAGGGAG+AGG + chr5_1:62929565-62929584 Msa0742890:CDS 45.0%
TGAAGGGAGAGGTAAATCAG+TGG + chr5_1:62929576-62929595 Msa0742890:CDS 45.0%
GGAAGCTGTTAATGATGGCA+AGG + chr5_1:62929822-62929841 Msa0742890:CDS 45.0%
AGTCACTATGCCTTCCATTG+AGG + chr5_1:62929858-62929877 Msa0742890:CDS 45.0%
ACTATGCCTTCCATTGAGGT+GGG + chr5_1:62929862-62929881 Msa0742890:CDS 45.0%
! AATAGCCTAGAGTTTGCTCC+TGG - chr5_1:62929970-62929989 None:intergenic 45.0%
AGGAGCAAACTCTAGGCTAT+TGG + chr5_1:62929969-62929988 Msa0742890:CDS 45.0%
TCATGTCTGCAATTGCAGCT+GGG + chr5_1:62930034-62930053 Msa0742890:CDS 45.0%
! AGGGCATTAGTTGAGGGTAT+TGG + chr5_1:62930193-62930212 Msa0742890:three_prime_UTR 45.0%
!! GCATTAGTTGAGGGTATTGG+TGG + chr5_1:62930196-62930215 Msa0742890:three_prime_UTR 45.0%
TCAATGTATGGTCCATGCCA+TGG + chr5_1:62930245-62930264 Msa0742890:three_prime_UTR 45.0%
CAATGTATGGTCCATGCCAT+GGG + chr5_1:62930246-62930265 Msa0742890:three_prime_UTR 45.0%
GGAAACTAGAGCGAGAATCT+CGG - chr5_1:62928588-62928607 None:intergenic 45.0%
GGTAGATTAGGCAAGCAATG+AGG - chr5_1:62928610-62928629 None:intergenic 45.0%
!! TAGCTTTGGATTGACTTCGG+TGG - chr5_1:62928711-62928730 None:intergenic 45.0%
!! AGTTTTGTCGATGGAAGACG+AGG + chr5_1:62928754-62928773 Msa0742890:CDS 45.0%
TACTCGCTTGAATCGAAGCT+TGG + chr5_1:62928815-62928834 Msa0742890:CDS 45.0%
TGTGATTAGGAACCAAGCTG+TGG + chr5_1:62928856-62928875 Msa0742890:CDS 45.0%
GTTACTGGAAGGTCACTTGA+AGG + chr5_1:62928884-62928903 Msa0742890:CDS 45.0%
CAATGTTGCGAGATGCCAAT+AGG + chr5_1:62928947-62928966 Msa0742890:CDS 45.0%
AGCGGAGTTGAATCTTACGA+CGG - chr5_1:62929152-62929171 None:intergenic 45.0%
TTGTTCAACGGGTGATGCAA+TGG + chr5_1:62929423-62929442 Msa0742890:CDS 45.0%
TGTTCAACGGGTGATGCAAT+GGG + chr5_1:62929424-62929443 Msa0742890:CDS 45.0%
TGATGCAATGGGGATGAACA+TGG + chr5_1:62929435-62929454 Msa0742890:CDS 45.0%
TTGTTCGGACAAGAAAGCTG+CGG + chr5_1:62929540-62929559 Msa0742890:CDS 45.0%
GTGAATTGGATTGAAGGGAG+AGG + chr5_1:62929565-62929584 Msa0742890:CDS 45.0%
TGAAGGGAGAGGTAAATCAG+TGG + chr5_1:62929576-62929595 Msa0742890:CDS 45.0%
GGAAGCTGTTAATGATGGCA+AGG + chr5_1:62929822-62929841 Msa0742890:CDS 45.0%
AGTCACTATGCCTTCCATTG+AGG + chr5_1:62929858-62929877 Msa0742890:CDS 45.0%
ACTATGCCTTCCATTGAGGT+GGG + chr5_1:62929862-62929881 Msa0742890:CDS 45.0%
! AATAGCCTAGAGTTTGCTCC+TGG - chr5_1:62929970-62929989 None:intergenic 45.0%
AGGAGCAAACTCTAGGCTAT+TGG + chr5_1:62929969-62929988 Msa0742890:CDS 45.0%
TCATGTCTGCAATTGCAGCT+GGG + chr5_1:62930034-62930053 Msa0742890:CDS 45.0%
! AGGGCATTAGTTGAGGGTAT+TGG + chr5_1:62930193-62930212 Msa0742890:three_prime_UTR 45.0%
!! GCATTAGTTGAGGGTATTGG+TGG + chr5_1:62930196-62930215 Msa0742890:three_prime_UTR 45.0%
TCAATGTATGGTCCATGCCA+TGG + chr5_1:62930245-62930264 Msa0742890:three_prime_UTR 45.0%
CAATGTATGGTCCATGCCAT+GGG + chr5_1:62930246-62930265 Msa0742890:three_prime_UTR 45.0%
! TTCGGATCTTTTCACGCCAC+CGG - chr5_1:62928535-62928554 None:intergenic 50.0%
! CATGGAGAGGTGTAGAGGTT+CGG - chr5_1:62928553-62928572 None:intergenic 50.0%
GAGATTGTGAGGACATGGAG+AGG - chr5_1:62928566-62928585 None:intergenic 50.0%
TCTCGGAGATTGTGAGGACA+TGG - chr5_1:62928571-62928590 None:intergenic 50.0%
CGAGAATCTCGGAGATTGTG+AGG - chr5_1:62928577-62928596 None:intergenic 50.0%
TTTGTCGATGGAAGACGAGG+AGG + chr5_1:62928757-62928776 Msa0742890:CDS 50.0%
ATGGAAGACGAGGAGGTTGT+TGG + chr5_1:62928764-62928783 Msa0742890:CDS 50.0%
TCCTAATCACAGCAGCACGT+CGG - chr5_1:62928847-62928866 None:intergenic 50.0%
CAGTAACTCTCTCCACAGCT+TGG - chr5_1:62928871-62928890 None:intergenic 50.0%
CAAGCTGTGGAGAGAGTTAC+TGG + chr5_1:62928869-62928888 Msa0742890:CDS 50.0%
CTGTGGAGAGAGTTACTGGA+AGG + chr5_1:62928873-62928892 Msa0742890:CDS 50.0%
! AGGGTTTGTTCAGATTCCGG+TGG + chr5_1:62928967-62928986 Msa0742890:CDS 50.0%
! GGGTTTGTTCAGATTCCGGT+GGG + chr5_1:62928968-62928987 Msa0742890:CDS 50.0%
ACCATCGAGCAACAAAGGAC+CGG - chr5_1:62928999-62929018 None:intergenic 50.0%
TTCAGTGGTTGCCATTGGCA+CGG - chr5_1:62929032-62929051 None:intergenic 50.0%
CAACCTTCAGTGGTTGCCAT+TGG - chr5_1:62929037-62929056 None:intergenic 50.0%
TCCATCACGAAGGACAACTG+CGG - chr5_1:62929116-62929135 None:intergenic 50.0%
CTCTGGTCATTCCATCACGA+AGG - chr5_1:62929126-62929145 None:intergenic 50.0%
GGAGTTGAATCTTACGACGG+GGG - chr5_1:62929149-62929168 None:intergenic 50.0%
CGGAGTTGAATCTTACGACG+GGG - chr5_1:62929150-62929169 None:intergenic 50.0%
GCGGAGTTGAATCTTACGAC+GGG - chr5_1:62929151-62929170 None:intergenic 50.0%
GTTCAACGGGTGATGCAATG+GGG + chr5_1:62929425-62929444 Msa0742890:CDS 50.0%
CGGCGGTGAATTGGATTGAA+GGG + chr5_1:62929560-62929579 Msa0742890:CDS 50.0%
AGGTAAATCAGTGGTGTGCG+AGG + chr5_1:62929585-62929604 Msa0742890:CDS 50.0%
GAAGACTAGTGTGGCGTCTT+TGG + chr5_1:62929642-62929661 Msa0742890:CDS 50.0%
CACTATGCCTTCCATTGAGG+TGG + chr5_1:62929861-62929880 Msa0742890:CDS 50.0%
GGAGCTAGTAAAGAGACTCC+AGG + chr5_1:62929949-62929968 Msa0742890:CDS 50.0%
AGACTCCAGGAGCAAACTCT+AGG + chr5_1:62929962-62929981 Msa0742890:CDS 50.0%
CTCATGTCTGCAATTGCAGC+TGG + chr5_1:62930033-62930052 Msa0742890:CDS 50.0%
! TTCGGATCTTTTCACGCCAC+CGG - chr5_1:62928535-62928554 None:intergenic 50.0%
! CATGGAGAGGTGTAGAGGTT+CGG - chr5_1:62928553-62928572 None:intergenic 50.0%
GAGATTGTGAGGACATGGAG+AGG - chr5_1:62928566-62928585 None:intergenic 50.0%
TCTCGGAGATTGTGAGGACA+TGG - chr5_1:62928571-62928590 None:intergenic 50.0%
CGAGAATCTCGGAGATTGTG+AGG - chr5_1:62928577-62928596 None:intergenic 50.0%
TTTGTCGATGGAAGACGAGG+AGG + chr5_1:62928757-62928776 Msa0742890:CDS 50.0%
ATGGAAGACGAGGAGGTTGT+TGG + chr5_1:62928764-62928783 Msa0742890:CDS 50.0%
TCCTAATCACAGCAGCACGT+CGG - chr5_1:62928847-62928866 None:intergenic 50.0%
CAGTAACTCTCTCCACAGCT+TGG - chr5_1:62928871-62928890 None:intergenic 50.0%
CAAGCTGTGGAGAGAGTTAC+TGG + chr5_1:62928869-62928888 Msa0742890:CDS 50.0%
CTGTGGAGAGAGTTACTGGA+AGG + chr5_1:62928873-62928892 Msa0742890:CDS 50.0%
! AGGGTTTGTTCAGATTCCGG+TGG + chr5_1:62928967-62928986 Msa0742890:CDS 50.0%
! GGGTTTGTTCAGATTCCGGT+GGG + chr5_1:62928968-62928987 Msa0742890:CDS 50.0%
ACCATCGAGCAACAAAGGAC+CGG - chr5_1:62928999-62929018 None:intergenic 50.0%
TTCAGTGGTTGCCATTGGCA+CGG - chr5_1:62929032-62929051 None:intergenic 50.0%
CAACCTTCAGTGGTTGCCAT+TGG - chr5_1:62929037-62929056 None:intergenic 50.0%
TCCATCACGAAGGACAACTG+CGG - chr5_1:62929116-62929135 None:intergenic 50.0%
CTCTGGTCATTCCATCACGA+AGG - chr5_1:62929126-62929145 None:intergenic 50.0%
GGAGTTGAATCTTACGACGG+GGG - chr5_1:62929149-62929168 None:intergenic 50.0%
CGGAGTTGAATCTTACGACG+GGG - chr5_1:62929150-62929169 None:intergenic 50.0%
GCGGAGTTGAATCTTACGAC+GGG - chr5_1:62929151-62929170 None:intergenic 50.0%
GTTCAACGGGTGATGCAATG+GGG + chr5_1:62929425-62929444 Msa0742890:CDS 50.0%
CGGCGGTGAATTGGATTGAA+GGG + chr5_1:62929560-62929579 Msa0742890:CDS 50.0%
AGGTAAATCAGTGGTGTGCG+AGG + chr5_1:62929585-62929604 Msa0742890:CDS 50.0%
GAAGACTAGTGTGGCGTCTT+TGG + chr5_1:62929642-62929661 Msa0742890:CDS 50.0%
CACTATGCCTTCCATTGAGG+TGG + chr5_1:62929861-62929880 Msa0742890:CDS 50.0%
GGAGCTAGTAAAGAGACTCC+AGG + chr5_1:62929949-62929968 Msa0742890:CDS 50.0%
AGACTCCAGGAGCAAACTCT+AGG + chr5_1:62929962-62929981 Msa0742890:CDS 50.0%
CTCATGTCTGCAATTGCAGC+TGG + chr5_1:62930033-62930052 Msa0742890:CDS 50.0%
! GAGGACATGGAGAGGTGTAG+AGG - chr5_1:62928558-62928577 None:intergenic 55.0%
CAACGCCGAAGAAAGCCGTA+AGG - chr5_1:62928631-62928650 None:intergenic 55.0%
GTTGTTGGTGCAGTGGTGTC+TGG + chr5_1:62928779-62928798 Msa0742890:CDS 55.0%
GTGCCAATGGCAACCACTGA+AGG + chr5_1:62929031-62929050 Msa0742890:CDS 55.0%
TCCGCAGTTGTCCTTCGTGA+TGG + chr5_1:62929112-62929131 Msa0742890:CDS 55.0%
TTCGGACAAGAAAGCTGCGG+CGG + chr5_1:62929543-62929562 Msa0742890:CDS 55.0%
AGAAAGCTGCGGCGGTGAAT+TGG + chr5_1:62929551-62929570 Msa0742890:CDS 55.0%
GCGGCGGTGAATTGGATTGA+AGG + chr5_1:62929559-62929578 Msa0742890:CDS 55.0%
!! CTTACTGGTTCAGCCATGGC+TGG + chr5_1:62929688-62929707 Msa0742890:CDS 55.0%
ACTGTGCCCACCTCAATGGA+AGG - chr5_1:62929871-62929890 None:intergenic 55.0%
TCCATTGAGGTGGGCACAGT+TGG + chr5_1:62929871-62929890 Msa0742890:CDS 55.0%
TCCAACTGTGCCCACCTCAA+TGG - chr5_1:62929875-62929894 None:intergenic 55.0%
ATTGAGGTGGGCACAGTTGG+AGG + chr5_1:62929874-62929893 Msa0742890:CDS 55.0%
TTGAGGTGGGCACAGTTGGA+GGG + chr5_1:62929875-62929894 Msa0742890:CDS 55.0%
! GTAGCTGGTTCAGTCCTTGC+AGG + chr5_1:62930000-62930019 Msa0742890:CDS 55.0%
TGAGTGAGAGCTCTCCTGCA+AGG - chr5_1:62930017-62930036 None:intergenic 55.0%
! GAGGACATGGAGAGGTGTAG+AGG - chr5_1:62928558-62928577 None:intergenic 55.0%
CAACGCCGAAGAAAGCCGTA+AGG - chr5_1:62928631-62928650 None:intergenic 55.0%
GTTGTTGGTGCAGTGGTGTC+TGG + chr5_1:62928779-62928798 Msa0742890:CDS 55.0%
GTGCCAATGGCAACCACTGA+AGG + chr5_1:62929031-62929050 Msa0742890:CDS 55.0%
TCCGCAGTTGTCCTTCGTGA+TGG + chr5_1:62929112-62929131 Msa0742890:CDS 55.0%
TTCGGACAAGAAAGCTGCGG+CGG + chr5_1:62929543-62929562 Msa0742890:CDS 55.0%
AGAAAGCTGCGGCGGTGAAT+TGG + chr5_1:62929551-62929570 Msa0742890:CDS 55.0%
GCGGCGGTGAATTGGATTGA+AGG + chr5_1:62929559-62929578 Msa0742890:CDS 55.0%
!! CTTACTGGTTCAGCCATGGC+TGG + chr5_1:62929688-62929707 Msa0742890:CDS 55.0%
ACTGTGCCCACCTCAATGGA+AGG - chr5_1:62929871-62929890 None:intergenic 55.0%
TCCATTGAGGTGGGCACAGT+TGG + chr5_1:62929871-62929890 Msa0742890:CDS 55.0%
TCCAACTGTGCCCACCTCAA+TGG - chr5_1:62929875-62929894 None:intergenic 55.0%
ATTGAGGTGGGCACAGTTGG+AGG + chr5_1:62929874-62929893 Msa0742890:CDS 55.0%
TTGAGGTGGGCACAGTTGGA+GGG + chr5_1:62929875-62929894 Msa0742890:CDS 55.0%
! GTAGCTGGTTCAGTCCTTGC+AGG + chr5_1:62930000-62930019 Msa0742890:CDS 55.0%
TGAGTGAGAGCTCTCCTGCA+AGG - chr5_1:62930017-62930036 None:intergenic 55.0%
CGAGGAGGTTGTTGGTGCAG+TGG + chr5_1:62928772-62928791 Msa0742890:CDS 60.0%
! GCCGACGTGCTGCTGTGATT+AGG + chr5_1:62928843-62928862 Msa0742890:CDS 60.0%
! CAGATTCCGGTGGGTGTTGC+CGG + chr5_1:62928977-62928996 Msa0742890:CDS 60.0%
AAAGGACCGGCAACACCCAC+CGG - chr5_1:62928986-62929005 None:intergenic 60.0%
GCCGGTCCTTTGTTGCTCGA+TGG + chr5_1:62928995-62929014 Msa0742890:CDS 60.0%
!! GACAACTGCGGAAGCACCAC+CGG - chr5_1:62929104-62929123 None:intergenic 60.0%
GAATCTTACGACGGGGGCTC+TGG - chr5_1:62929143-62929162 None:intergenic 60.0%
TCAGCCATGGCTGGTGCTCT+TGG + chr5_1:62929697-62929716 Msa0742890:CDS 60.0%
TGAGGTGGGCACAGTTGGAG+GGG + chr5_1:62929876-62929895 Msa0742890:CDS 60.0%
CGAGGAGGTTGTTGGTGCAG+TGG + chr5_1:62928772-62928791 Msa0742890:CDS 60.0%
! GCCGACGTGCTGCTGTGATT+AGG + chr5_1:62928843-62928862 Msa0742890:CDS 60.0%
! CAGATTCCGGTGGGTGTTGC+CGG + chr5_1:62928977-62928996 Msa0742890:CDS 60.0%
AAAGGACCGGCAACACCCAC+CGG - chr5_1:62928986-62929005 None:intergenic 60.0%
GCCGGTCCTTTGTTGCTCGA+TGG + chr5_1:62928995-62929014 Msa0742890:CDS 60.0%
!! GACAACTGCGGAAGCACCAC+CGG - chr5_1:62929104-62929123 None:intergenic 60.0%
GAATCTTACGACGGGGGCTC+TGG - chr5_1:62929143-62929162 None:intergenic 60.0%
TCAGCCATGGCTGGTGCTCT+TGG + chr5_1:62929697-62929716 Msa0742890:CDS 60.0%
TGAGGTGGGCACAGTTGGAG+GGG + chr5_1:62929876-62929895 Msa0742890:CDS 60.0%
GCCATGGCTGGTGCTCTTGG+TGG + chr5_1:62929700-62929719 Msa0742890:CDS 65.0%
!! GCCACCAAGAGCACCAGCCA+TGG - chr5_1:62929704-62929723 None:intergenic 65.0%
GAGGTGGGCACAGTTGGAGG+GGG + chr5_1:62929877-62929896 Msa0742890:CDS 65.0%
GCCATGGCTGGTGCTCTTGG+TGG + chr5_1:62929700-62929719 Msa0742890:CDS 65.0%
!! GCCACCAAGAGCACCAGCCA+TGG - chr5_1:62929704-62929723 None:intergenic 65.0%
GAGGTGGGCACAGTTGGAGG+GGG + chr5_1:62929877-62929896 Msa0742890:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 62928380 62930335 62928380 ID=Msa0742890;Name=Msa0742890
chr5_1 mRNA 62928380 62930335 62928380 ID=Msa0742890-mRNA-1;Parent=Msa0742890;Name=Msa0742890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.5|1|1|1|2|213|545
chr5_1 exon 62928380 62929245 62928380 ID=Msa0742890-mRNA-1:exon:18518;Parent=Msa0742890-mRNA-1
chr5_1 exon 62929351 62930335 62929351 ID=Msa0742890-mRNA-1:exon:18519;Parent=Msa0742890-mRNA-1
chr5_1 CDS 62928380 62929245 62928380 ID=Msa0742890-mRNA-1:cds;Parent=Msa0742890-mRNA-1
chr5_1 CDS 62929351 62930122 62929351 ID=Msa0742890-mRNA-1:cds;Parent=Msa0742890-mRNA-1
chr5_1 three_prime_UTR 62930123 62930335 62930123 ID=Msa0742890-mRNA-1:three_prime_utr;Parent=Msa0742890-mRNA-1
Gene Sequence

>Msa0742890

ATGGAAGTTCAACGCCAAATATATTCTGATCCCTCCAGCAAAACAAAGAAGAACCAAAAGCAGCAGAATTCACTGTCACAGCCTTCTTCACTTTACTTAACAAACACTTTTTTCTTCGGTCTCTTCTTCTCCGTCGCATACTTTCTTCTTAACCGGTGGCGTGAAAAGATCCGAACCTCTACACCTCTCCATGTCCTCACAATCTCCGAGATTCTCGCTCTAGTTTCCCTCATTGCTTGCCTAATCTACCTTACGGCTTTCTTCGGCGTTGCCTTCATCCTTCATTACGATGAAGAAGAAGATGAAGTTGCTGACATTGCTGTGAAAACCACCGAAGTCAATCCAAAGCTACAACAGGAAATCCTTGTTCAAAAAGTTTTGTCGATGGAAGACGAGGAGGTTGTTGGTGCAGTGGTGTCTGGAACAATTCCATCTTACTCGCTTGAATCGAAGCTTGGAGATTGCCGACGTGCTGCTGTGATTAGGAACCAAGCTGTGGAGAGAGTTACTGGAAGGTCACTTGAAGGTTTACCAATGGAAGGTTTTGATTATGATTCTATATTAGGACAATGTTGCGAGATGCCAATAGGGTTTGTTCAGATTCCGGTGGGTGTTGCCGGTCCTTTGTTGCTCGATGGTAAAGAATACACCGTGCCAATGGCAACCACTGAAGGTTGTTTAGTTGCAAGTACCAACAGAGGTTGTAAAGCTATTTATGTTTCCGGTGGTGCTTCCGCAGTTGTCCTTCGTGATGGAATGACCAGAGCCCCCGTCGTAAGATTCAACTCCGCTAAAAGAGCTTCTCAGTTGAAATTCTTTTTGGAAGATCCTCTAAATTTTGATTCCATCTCTCATACATTCAACAAGTCAAGTAGATTTGCGAGATTACAAAGTATTAAAGCTACTATAGCAGGAAAAAATTTATACACTAGATTCACTTGTTCAACGGGTGATGCAATGGGGATGAACATGGTATCAAAAGGCGTACAAAACGTACTTGATTTTCTTCAAACCGATTTTCCTGACATGGATGTTATTGGTATATCTGGAAATTTTTGTTCGGACAAGAAAGCTGCGGCGGTGAATTGGATTGAAGGGAGAGGTAAATCAGTGGTGTGCGAGGCTGTAATTAAAGAAGAGGTGGTGAAGAAAGTGTTGAAGACTAGTGTGGCGTCTTTGGTTGAGCTTAACATGCTTAAAAATCTTACTGGTTCAGCCATGGCTGGTGCTCTTGGTGGCTTCAATGCACATGCTAGTAATATTGTTTCTGCTATTTACTTGGCAACTGGTCAAGATCCTGCTCAAAATGTTGAGAGTTCTCATTGTATGACCATGATGGAAGCTGTTAATGATGGCAAGGACCTTCATATCTCAGTCACTATGCCTTCCATTGAGGTGGGCACAGTTGGAGGGGGCACACAACTTGCATCTCAATCAGCTTGTCTTAATTTACTTGGTGTTAAGGGAGCTAGTAAAGAGACTCCAGGAGCAAACTCTAGGCTATTGGCAACTATAGTAGCTGGTTCAGTCCTTGCAGGAGAGCTCTCACTCATGTCTGCAATTGCAGCTGGGCAGCTTGTTAAAAGCCACATGAAATACAACAGATCTAGTAAAGATGTCACCAAAGTTGCTTCATGA
Protein sequence

>Msa0742890

MEVQRQIYSDPSSKTKKNQKQQNSLSQPSSLYLTNTFFFGLFFSVAYFLLNRWREKIRTSTPLHVLTISEILALVSLIACLIYLTAFFGVAFILHYDEEEDEVADIAVKTTEVNPKLQQEILVQKVLSMEDEEVVGAVVSGTIPSYSLESKLGDCRRAAVIRNQAVERVTGRSLEGLPMEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIYVSGGASAVVLRDGMTRAPVVRFNSAKRASQLKFFLEDPLNFDSISHTFNKSSRFARLQSIKATIAGKNLYTRFTCSTGDAMGMNMVSKGVQNVLDFLQTDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVASLVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYLATGQDPAQNVESSHCMTMMEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKETPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDVTKVAS*