AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0256540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0256540 MtrunA17_Chr2g0317871 96.915 389 12 0 1 389 1 389 0.0 767
Msa0256540 MtrunA17_Chr2g0317881 81.795 390 65 3 1 389 1 385 0.0 608
Msa0256540 MtrunA17_Chr2g0281871 45.636 401 182 8 7 387 9 393 4.71e-112 333
Msa0256540 MtrunA17_Chr7g0249131 28.271 428 226 14 1 379 1 396 5.45e-31 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0256540 AT4G27460.1 51.378 399 171 11 1 387 1 388 1.44e-113 337
Msa0256540 AT5G53750.1 50.120 415 169 12 1 387 1 405 1.11e-109 328
Msa0256540 AT1G65320.1 26.790 433 229 14 1 379 1 399 1.35e-28 116

Find 111 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCATTTCTGTCATGAATA+AGG 0.230254 2_2:-51339230 Msa0256540:three_prime_UTR
AAGGTTGAAGGAAAAGAATT+TGG 0.316598 2_2:-51339751 Msa0256540:CDS
CGATGACCTTGCATACTTTC+CGG 0.330667 2_2:+51339626 None:intergenic
GTGTCCTTCCAAAGCTCTTA+AGG 0.331448 2_2:-51341404 Msa0256540:CDS
GCGAAAGTTTCGTCAGTGTT+TGG 0.340276 2_2:-51341522 Msa0256540:CDS
CACAGCAATCAAAGAGCTCT+TGG 0.367612 2_2:+51339554 None:intergenic
AATTGAAGCCTTAAGAGCTT+TGG 0.367682 2_2:+51341396 None:intergenic
AACTGTGACCACTCTGAATT+CGG 0.379187 2_2:-51341499 Msa0256540:CDS
GCCCTCCAGAGGATCTAGTT+AGG 0.395318 2_2:-51339785 Msa0256540:CDS
CTCTACATTCCTCACATACT+TGG 0.414784 2_2:+51339593 None:intergenic
GAGGATGATTGGAGCTTAGT+TGG 0.417326 2_2:-51339486 Msa0256540:CDS
TGTGGGTTATTGAGGATGAT+TGG 0.421312 2_2:-51339497 Msa0256540:CDS
CATGACAGAAATGCATCAAA+GGG 0.427352 2_2:+51339237 None:intergenic
GCCATCACAACTTTGTCTGC+AGG 0.430978 2_2:-51339837 Msa0256540:CDS
CTTCAACAGCAGAAGACGCC+TGG 0.435308 2_2:+51339976 None:intergenic
AGGTTCTTGCTTGGTTCCAT+TGG 0.451234 2_2:-51340080 Msa0256540:CDS
ATGTGTTGGGAAAATTTGTA+TGG 0.452481 2_2:-51341467 Msa0256540:CDS
TAGTGAAGCATGAAACTTGT+TGG 0.454029 2_2:-51339362 Msa0256540:three_prime_UTR
TAATAGAGTGAATTACTTGT+GGG 0.472091 2_2:-51339514 Msa0256540:CDS
TCGGTCAATGTCAATGTGTT+GGG 0.473950 2_2:-51341480 Msa0256540:CDS
CTCCATTGATTACTCTTCCC+AGG 0.476252 2_2:-51339994 Msa0256540:CDS
GGTTGTAAAGGCAAGGTTGA+AGG 0.477069 2_2:-51339763 Msa0256540:CDS
ATCAACCTTATTCAAAACAT+TGG 0.479230 2_2:+51341372 None:intergenic
GCCATTGATCTCATACTTGA+GGG 0.480304 2_2:-51340239 Msa0256540:CDS
GAATTACTTGTGGGTTATTG+AGG 0.486011 2_2:-51339505 Msa0256540:CDS
AACTTTCGCCGCCGGAGCTA+CGG 0.487382 2_2:+51341536 None:intergenic
GATGTGATCAGGTTCTTGCT+TGG 0.488754 2_2:-51340089 Msa0256540:CDS
ATTGAAGTCCTCCGTAGCTC+CGG 0.495539 2_2:-51341547 Msa0256540:CDS
CCCTCCAGAGGATCTAGTTA+GGG 0.498391 2_2:-51339784 Msa0256540:CDS
GCGAGGAGTTTGACACGGTC+CGG 0.500066 2_2:-51339645 Msa0256540:CDS
GCAAAGATTGAACGCGGCGG+CGG 0.501363 2_2:+51341666 None:intergenic
AACAGAAAGACCACATTCAC+AGG 0.502709 2_2:+51339339 None:intergenic
AGACGATCGATGGATTGTGC+AGG 0.510025 2_2:+51340041 None:intergenic
GACCGTGTCAAACTCCTCGC+TGG 0.518598 2_2:+51339648 None:intergenic
GTTGCAATTGTCGACGGTGA+TGG 0.521762 2_2:-51339921 Msa0256540:CDS
AGGGACAAGAACTATGATAC+AGG 0.522380 2_2:+51339189 None:intergenic
GGATCTAGTTAGGGTTGTAA+AGG 0.524022 2_2:-51339775 Msa0256540:CDS
CCATCACAACTTTGTCTGCA+GGG 0.524200 2_2:-51339836 Msa0256540:CDS
ACAGCAATCAAAGAGCTCTT+GGG 0.525945 2_2:+51339555 None:intergenic
AATAAATGGTACCTAGATGA+AGG 0.528220 2_2:+51341328 None:intergenic
TTGTGTGAGGGACTTTGAGA+TGG 0.531894 2_2:+51339953 None:intergenic
CCCCTCAAGTATGAGATCAA+TGG 0.534194 2_2:+51340238 None:intergenic
CTAATAGAGTGAATTACTTG+TGG 0.535417 2_2:-51339515 Msa0256540:CDS
ACAACCCTAACTAGATCCTC+TGG 0.535562 2_2:+51339780 None:intergenic
TCATGACAGAAATGCATCAA+AGG 0.537397 2_2:+51339236 None:intergenic
TTCATCTAGAACCTTCATCT+AGG 0.539213 2_2:-51341339 Msa0256540:intron
TGCCATTGATCTCATACTTG+AGG 0.539564 2_2:-51340240 Msa0256540:CDS
TTGCAATTGTCGACGGTGAT+GGG 0.542443 2_2:-51339920 Msa0256540:CDS
GACGGTGATGGGACATTCAT+CGG 0.542508 2_2:-51339909 Msa0256540:CDS
TTCGGTCAATGTCAATGTGT+TGG 0.546600 2_2:-51341481 Msa0256540:CDS
CCCTGCAGACAAAGTTGTGA+TGG 0.549793 2_2:+51339836 None:intergenic
CATCACAACTTTGTCTGCAG+GGG 0.550293 2_2:-51339835 Msa0256540:CDS
TAACACAAGAGGATGTGATC+AGG 0.550433 2_2:-51340100 Msa0256540:CDS
GATAATATTGAGACGATCGA+TGG 0.553025 2_2:+51340031 None:intergenic
TGCAGTGTGGCTGATGAGGC+CGG 0.553949 2_2:-51339307 Msa0256540:three_prime_UTR
CGCCGCGTTCAATCTTTGCA+TGG 0.555324 2_2:-51341662 Msa0256540:exon
GAGTGCACTGAAGCGGCCAA+TGG 0.559548 2_2:+51340064 None:intergenic
ACAACGGTGTTGAGTTCTGT+TGG 0.560590 2_2:-51340124 Msa0256540:CDS
CGCCTGGGAAGAGTAATCAA+TGG 0.562410 2_2:+51339992 None:intergenic
ATCACAACATGCAAGTGTGA+AGG 0.567692 2_2:+51339875 None:intergenic
AACTTGTTGGCCTGTGAATG+TGG 0.567954 2_2:-51339349 Msa0256540:three_prime_UTR
TAGTTAGGGTTGTAAAGGCA+AGG 0.569328 2_2:-51339770 Msa0256540:CDS
GAGTTATCTGATCTCTGTCT+CGG 0.571057 2_2:-51341619 Msa0256540:CDS
CAACAGAAGTTTGTTGTGTG+AGG 0.577183 2_2:+51339940 None:intergenic
ATCCTCCTCTTCATCTGATG+AGG 0.578040 2_2:-51339676 Msa0256540:CDS
TGCAAGGTCATCGAGCTACT+CGG 0.582724 2_2:-51339616 Msa0256540:CDS
ATCACAACTTTGTCTGCAGG+GGG 0.584206 2_2:-51339834 Msa0256540:CDS
TTTCGCCGCCGGAGCTACGG+AGG 0.585312 2_2:+51341539 None:intergenic
TCGTCTCAATATTATCAGCT+CGG 0.585428 2_2:-51340024 Msa0256540:CDS
GTTCTGTTGGTTAACACAAG+AGG 0.588395 2_2:-51340111 Msa0256540:CDS
ACTGTCCTCATCAGATGAAG+AGG 0.592088 2_2:+51339671 None:intergenic
TTCAACAGCAGAAGACGCCT+GGG 0.592455 2_2:+51339977 None:intergenic
GTGCAGGGAGTGCACTGAAG+CGG 0.593463 2_2:+51340057 None:intergenic
GACTTCAATTGCCTCAGCGA+CGG 0.595693 2_2:+51341561 None:intergenic
GTCCTCATCAGATGAAGAGG+AGG 0.596841 2_2:+51339674 None:intergenic
TCACAACATGCAAGTGTGAA+GGG 0.596883 2_2:+51339876 None:intergenic
GACGATCGATGGATTGTGCA+GGG 0.604203 2_2:+51340042 None:intergenic
GAAGTCCTCCGTAGCTCCGG+CGG 0.605794 2_2:-51341544 Msa0256540:CDS
TGCAGACAAAGTTGTGATGG+CGG 0.609998 2_2:+51339839 None:intergenic
AACAGAAGTTTGTTGTGTGA+GGG 0.614439 2_2:+51339941 None:intergenic
CACGGTCCGGAAAGTATGCA+AGG 0.614793 2_2:-51339632 Msa0256540:CDS
GTTGAAGTCGCTTTCAACGT+CGG 0.615025 2_2:-51341587 Msa0256540:CDS
AGGGCGACCACAGTCAATGT+AGG 0.615124 2_2:+51339803 None:intergenic
GTTGAAAGCGACTTCAACGG+CGG 0.616613 2_2:+51341592 None:intergenic
GAAGCCTTAAGAGCTTTGGA+AGG 0.616878 2_2:+51341400 None:intergenic
TGACTGTGGTCGCCCTCCAG+AGG 0.619657 2_2:-51339796 Msa0256540:CDS
ATGTTGTGATGAGACGGTTG+CGG 0.621625 2_2:-51339862 Msa0256540:CDS
ACTTCTGTTGCAATTGTCGA+CGG 0.622534 2_2:-51339927 Msa0256540:CDS
ACTGACGAAACTTTCGCCGC+CGG 0.623945 2_2:+51341528 None:intergenic
AACAGAACTCAACACCGTTG+TGG 0.629524 2_2:+51340126 None:intergenic
TAACTGCAGTGTGGCTGATG+AGG 0.632164 2_2:-51339311 Msa0256540:three_prime_UTR
CGGCGGAGAGAATCTCGAAA+CGG 0.635033 2_2:+51341683 None:intergenic
GACGTTGAAAGCGACTTCAA+CGG 0.641361 2_2:+51341589 None:intergenic
ACCCTAACTAGATCCTCTGG+AGG 0.646675 2_2:+51339783 None:intergenic
AGAGGAGGATGACATATCAC+CGG 0.649223 2_2:+51339689 None:intergenic
GCTACTCGGCCAAGTATGTG+AGG 0.650705 2_2:-51339602 Msa0256540:CDS
CATTGATCTCATACTTGAGG+GGG 0.653452 2_2:-51340237 Msa0256540:CDS
CAAGTATGTGAGGAATGTAG+AGG 0.658949 2_2:-51339592 Msa0256540:CDS
ACTTGCATGTTGTGATGAGA+CGG 0.665678 2_2:-51339868 Msa0256540:CDS
GACATTGACCGAATTCAGAG+TGG 0.672174 2_2:+51341491 None:intergenic
AACGTCGGCTACCGTCGCTG+AGG 0.672712 2_2:-51341572 Msa0256540:CDS
CCATTGATCTCATACTTGAG+GGG 0.673886 2_2:-51340238 Msa0256540:CDS
CCCTAACTAGATCCTCTGGA+GGG 0.680964 2_2:+51339784 None:intergenic
TTGATGGCCTACATTGACTG+TGG 0.683351 2_2:-51339810 Msa0256540:CDS
GTCCAGCGAGGAGTTTGACA+CGG 0.692530 2_2:-51339650 Msa0256540:CDS
TTCCATGCAAAGATTGAACG+CGG 0.705700 2_2:+51341660 None:intergenic
CATGCAAAGATTGAACGCGG+CGG 0.705845 2_2:+51341663 None:intergenic
ATGACAGAAATGCATCAAAG+GGG 0.705982 2_2:+51339238 None:intergenic
TTAACAATCAACAGCCACAA+CGG 0.709558 2_2:-51340140 Msa0256540:CDS
TGTTATGAATAACTGCAGTG+TGG 0.714149 2_2:-51339320 Msa0256540:three_prime_UTR
CTGATGAGGACAGTCCAGCG+AGG 0.749311 2_2:-51339662 Msa0256540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATGAATAAACAAATAAA+TGG + chr2_2:51339516-51339535 None:intergenic 10.0%
!!! AACTTGAAATTGTATTTTTT+TGG - chr2_2:51340391-51340410 Msa0256540:intron 15.0%
!!! ACTTGAAATTGTATTTTTTT+GGG - chr2_2:51340392-51340411 Msa0256540:intron 15.0%
!!! AATTTCCAATGTTTTGAATA+AGG - chr2_2:51339450-51339469 Msa0256540:CDS 20.0%
!!! TAAGACATTCTTTTTTTGTT+TGG + chr2_2:51339705-51339724 None:intergenic 20.0%
!!! AATAATGTTTGTCATTGATT+TGG - chr2_2:51339766-51339785 Msa0256540:CDS 20.0%
!! TTGTTTACACTCAAAATTTA+TGG - chr2_2:51339967-51339986 Msa0256540:CDS 20.0%
!!! AATGTAAAATGATTTGTGTT+TGG + chr2_2:51340013-51340032 None:intergenic 20.0%
!!! TATAATGTGTTTGATTTACA+TGG - chr2_2:51340187-51340206 Msa0256540:CDS 20.0%
!! ATGAAAATCCTTAAAAAAAG+AGG - chr2_2:51340311-51340330 Msa0256540:intron 20.0%
!!! TACATATTCCTCTTTTTTTA+AGG + chr2_2:51340322-51340341 None:intergenic 20.0%
!! AAAAAAAGAGGAATATGTAT+CGG - chr2_2:51340323-51340342 Msa0256540:intron 20.0%
!!! CTTGAAATTGTATTTTTTTG+GGG - chr2_2:51340393-51340412 Msa0256540:intron 20.0%
!!! TTGAAATTGTATTTTTTTGG+GGG - chr2_2:51340394-51340413 Msa0256540:intron 20.0%
!!! TACTTTTTCTAATATCTTGA+AGG - chr2_2:51341370-51341389 Msa0256540:CDS 20.0%
!!! TTTTCAAAGAAAACATTTGA+GGG + chr2_2:51341660-51341679 None:intergenic 20.0%
!!! ATTTTCAAAGAAAACATTTG+AGG + chr2_2:51341661-51341680 None:intergenic 20.0%
!! AAAGATTTTGTTCTTTGCAA+AGG + chr2_2:51339402-51339421 None:intergenic 25.0%
! ATCAACCTTATTCAAAACAT+TGG + chr2_2:51339458-51339477 None:intergenic 25.0%
!!! AATGTTTTGAATAAGGTTGA+TGG - chr2_2:51339457-51339476 Msa0256540:CDS 25.0%
! ACAATGCATAAAAATATGCA+AGG - chr2_2:51339654-51339673 Msa0256540:CDS 25.0%
!!! ATTCTTTTTTTGTTTGGTAG+TGG + chr2_2:51339699-51339718 None:intergenic 25.0%
!!! TGTCATTGATTTGGATTAAA+CGG - chr2_2:51339775-51339794 Msa0256540:CDS 25.0%
! ATACACCTCTATAATCAATT+TGG + chr2_2:51339802-51339821 None:intergenic 25.0%
!!! TTTGACTTTGTATCTGATTT+TGG - chr2_2:51339888-51339907 Msa0256540:CDS 25.0%
!! AATTGATTCTATTGAGTGTT+TGG - chr2_2:51339944-51339963 Msa0256540:CDS 25.0%
! TCAACAATTAAGTGTATGTT+TGG + chr2_2:51340071-51340090 None:intergenic 25.0%
!! TGAATTTGAAATTTGCTTTC+AGG - chr2_2:51340133-51340152 Msa0256540:CDS 25.0%
!!! TGATATTTGTTGTAGTTTTG+AGG - chr2_2:51340160-51340179 Msa0256540:CDS 25.0%
!!! GATATTTGTTGTAGTTTTGA+GGG - chr2_2:51340161-51340180 Msa0256540:CDS 25.0%
! AAACTCATACTCAAAATCAA+GGG + chr2_2:51340230-51340249 None:intergenic 25.0%
! AAAACTCATACTCAAAATCA+AGG + chr2_2:51340231-51340250 None:intergenic 25.0%
! CATTTAGAAACATATGATTC+AGG + chr2_2:51340370-51340389 None:intergenic 25.0%
!!! TGAAATTGTATTTTTTTGGG+GGG - chr2_2:51340395-51340414 Msa0256540:intron 25.0%
! TAACATCAAAATAACAAGGA+GGG + chr2_2:51340555-51340574 None:intergenic 25.0%
!!! ATTTTGATGTTACAGCTTAT+TGG - chr2_2:51340563-51340582 Msa0256540:intron 25.0%
! TAATAGAGTGAATTACTTGT+GGG - chr2_2:51341313-51341332 Msa0256540:intron 25.0%
! ATAAAGCAAAAACAAAGATC+CGG + chr2_2:51341542-51341561 None:intergenic 25.0%
ATGTGTTGGGAAAATTTGTA+TGG - chr2_2:51339360-51339379 Msa0256540:three_prime_UTR 30.0%
AATAAATGGTACCTAGATGA+AGG + chr2_2:51339502-51339521 None:intergenic 30.0%
GCATAAAAATATGCAAGGTT+CGG - chr2_2:51339659-51339678 Msa0256540:CDS 30.0%
CATAAAAATATGCAAGGTTC+GGG - chr2_2:51339660-51339679 Msa0256540:CDS 30.0%
ATAAAAATATGCAAGGTTCG+GGG - chr2_2:51339661-51339680 Msa0256540:CDS 30.0%
GTAACATCAAAATAACAAGG+AGG + chr2_2:51340556-51340575 None:intergenic 30.0%
GCTGTAACATCAAAATAACA+AGG + chr2_2:51340559-51340578 None:intergenic 30.0%
!!! CCTTTTTTTGTCTGCAAAAT+TGG + chr2_2:51340633-51340652 None:intergenic 30.0%
! CCAATTTTGCAGACAAAAAA+AGG - chr2_2:51340630-51340649 Msa0256540:intron 30.0%
! ATTTTGCAGACAAAAAAAGG+TGG - chr2_2:51340633-51340652 Msa0256540:intron 30.0%
AAGGTTGAAGGAAAAGAATT+TGG - chr2_2:51341076-51341095 Msa0256540:intron 30.0%
CTAATAGAGTGAATTACTTG+TGG - chr2_2:51341312-51341331 Msa0256540:intron 30.0%
ATGCATTTCTGTCATGAATA+AGG - chr2_2:51341597-51341616 Msa0256540:CDS 30.0%
AATTGAAGCCTTAAGAGCTT+TGG + chr2_2:51339434-51339453 None:intergenic 35.0%
! TTCATCTAGAACCTTCATCT+AGG - chr2_2:51339488-51339507 Msa0256540:CDS 35.0%
TCACAGCACGTAAATAATCT+TGG - chr2_2:51339570-51339589 Msa0256540:CDS 35.0%
!!! TTTTTTTGTTTGGTAGTGGC+CGG + chr2_2:51339695-51339714 None:intergenic 35.0%
ACGGTCCAAATTGATTATAG+AGG - chr2_2:51339794-51339813 Msa0256540:CDS 35.0%
!! TAAGTGTATGTTTGGTTCTG+AGG + chr2_2:51340063-51340082 None:intergenic 35.0%
!!! TTTTTTTGGGGGGTAAGTTT+TGG - chr2_2:51340405-51340424 Msa0256540:intron 35.0%
TGGAATTGATTGACATGGAA+AGG - chr2_2:51340432-51340451 Msa0256540:intron 35.0%
GGAATTGATTGACATGGAAA+GGG - chr2_2:51340433-51340452 Msa0256540:intron 35.0%
GAATTGATTGACATGGAAAG+GGG - chr2_2:51340434-51340453 Msa0256540:intron 35.0%
TTAACAATCAACAGCCACAA+CGG - chr2_2:51340687-51340706 Msa0256540:intron 35.0%
GATAATATTGAGACGATCGA+TGG + chr2_2:51340799-51340818 None:intergenic 35.0%
TCGTCTCAATATTATCAGCT+CGG - chr2_2:51340803-51340822 Msa0256540:intron 35.0%
!! AACAGAAGTTTGTTGTGTGA+GGG + chr2_2:51340889-51340908 None:intergenic 35.0%
! GAATTACTTGTGGGTTATTG+AGG - chr2_2:51341322-51341341 Msa0256540:intron 35.0%
TAGTGAAGCATGAAACTTGT+TGG - chr2_2:51341465-51341484 Msa0256540:CDS 35.0%
TGTTATGAATAACTGCAGTG+TGG - chr2_2:51341507-51341526 Msa0256540:CDS 35.0%
ATGACAGAAATGCATCAAAG+GGG + chr2_2:51341592-51341611 None:intergenic 35.0%
CATGACAGAAATGCATCAAA+GGG + chr2_2:51341593-51341612 None:intergenic 35.0%
TCATGACAGAAATGCATCAA+AGG + chr2_2:51341594-51341613 None:intergenic 35.0%
TTCCATGCAAAGATTGAACG+CGG + chr2_2:51339170-51339189 None:intergenic 40.0%
GAGTTATCTGATCTCTGTCT+CGG - chr2_2:51339208-51339227 Msa0256540:three_prime_UTR 40.0%
AACTGTGACCACTCTGAATT+CGG - chr2_2:51339328-51339347 Msa0256540:three_prime_UTR 40.0%
TTCGGTCAATGTCAATGTGT+TGG - chr2_2:51339346-51339365 Msa0256540:three_prime_UTR 40.0%
TCGGTCAATGTCAATGTGTT+GGG - chr2_2:51339347-51339366 Msa0256540:three_prime_UTR 40.0%
!!! TTTTTTGTTTGGTAGTGGCC+GGG + chr2_2:51339694-51339713 None:intergenic 40.0%
!! TCTGATTTTGGCATGTTGTC+AGG - chr2_2:51339900-51339919 Msa0256540:CDS 40.0%
GAGTGTGGAATTGATTGACA+TGG - chr2_2:51340427-51340446 Msa0256540:intron 40.0%
TGCCATTGATCTCATACTTG+AGG - chr2_2:51340587-51340606 Msa0256540:intron 40.0%
GCCATTGATCTCATACTTGA+GGG - chr2_2:51340588-51340607 Msa0256540:intron 40.0%
CCATTGATCTCATACTTGAG+GGG - chr2_2:51340589-51340608 Msa0256540:intron 40.0%
CATTGATCTCATACTTGAGG+GGG - chr2_2:51340590-51340609 Msa0256540:intron 40.0%
CAAAAAAAGGTGGCCTTTCA+AGG - chr2_2:51340643-51340662 Msa0256540:intron 40.0%
! GTTCTGTTGGTTAACACAAG+AGG - chr2_2:51340716-51340735 Msa0256540:intron 40.0%
TAACACAAGAGGATGTGATC+AGG - chr2_2:51340727-51340746 Msa0256540:intron 40.0%
!! CAACAGAAGTTTGTTGTGTG+AGG + chr2_2:51340890-51340909 None:intergenic 40.0%
ACTTCTGTTGCAATTGTCGA+CGG - chr2_2:51340900-51340919 Msa0256540:intron 40.0%
TCACAACATGCAAGTGTGAA+GGG + chr2_2:51340954-51340973 None:intergenic 40.0%
ATCACAACATGCAAGTGTGA+AGG + chr2_2:51340955-51340974 None:intergenic 40.0%
ACTTGCATGTTGTGATGAGA+CGG - chr2_2:51340959-51340978 Msa0256540:intron 40.0%
GGATCTAGTTAGGGTTGTAA+AGG - chr2_2:51341052-51341071 Msa0256540:intron 40.0%
TAGTTAGGGTTGTAAAGGCA+AGG - chr2_2:51341057-51341076 Msa0256540:intron 40.0%
!!! ACGCTTTTGACTTCTTTGAC+CGG - chr2_2:51341119-51341138 Msa0256540:intron 40.0%
CTCTACATTCCTCACATACT+TGG + chr2_2:51341237-51341256 None:intergenic 40.0%
CAAGTATGTGAGGAATGTAG+AGG - chr2_2:51341235-51341254 Msa0256540:intron 40.0%
ACAGCAATCAAAGAGCTCTT+GGG + chr2_2:51341275-51341294 None:intergenic 40.0%
! TGTGGGTTATTGAGGATGAT+TGG - chr2_2:51341330-51341349 Msa0256540:intron 40.0%
AACAGAAAGACCACATTCAC+AGG + chr2_2:51341491-51341510 None:intergenic 40.0%
AGGGACAAGAACTATGATAC+AGG + chr2_2:51341641-51341660 None:intergenic 40.0%
GACGTTGAAAGCGACTTCAA+CGG + chr2_2:51339241-51339260 None:intergenic 45.0%
! GTTGAAGTCGCTTTCAACGT+CGG - chr2_2:51339240-51339259 Msa0256540:three_prime_UTR 45.0%
GCGAAAGTTTCGTCAGTGTT+TGG - chr2_2:51339305-51339324 Msa0256540:three_prime_UTR 45.0%
GACATTGACCGAATTCAGAG+TGG + chr2_2:51339339-51339358 None:intergenic 45.0%
GTGTCCTTCCAAAGCTCTTA+AGG - chr2_2:51339423-51339442 Msa0256540:exon 45.0%
!! GAAGCCTTAAGAGCTTTGGA+AGG + chr2_2:51339430-51339449 None:intergenic 45.0%
!!! TTTTTGTTTGGTAGTGGCCG+GGG + chr2_2:51339693-51339712 None:intergenic 45.0%
!! GATTTTGGCATGTTGTCAGG+TGG - chr2_2:51339903-51339922 Msa0256540:CDS 45.0%
TTGATTGACATGGAAAGGGG+TGG - chr2_2:51340437-51340456 Msa0256540:intron 45.0%
TGATTGACATGGAAAGGGGT+GGG - chr2_2:51340438-51340457 Msa0256540:intron 45.0%
CCCCTCAAGTATGAGATCAA+TGG + chr2_2:51340592-51340611 None:intergenic 45.0%
! GCTGCAGTTTTCTCCTTGAA+AGG + chr2_2:51340659-51340678 None:intergenic 45.0%
AACAGAACTCAACACCGTTG+TGG + chr2_2:51340704-51340723 None:intergenic 45.0%
! ACAACGGTGTTGAGTTCTGT+TGG - chr2_2:51340703-51340722 Msa0256540:intron 45.0%
GATGTGATCAGGTTCTTGCT+TGG - chr2_2:51340738-51340757 Msa0256540:intron 45.0%
AGGTTCTTGCTTGGTTCCAT+TGG - chr2_2:51340747-51340766 Msa0256540:intron 45.0%
! CTCCATTGATTACTCTTCCC+AGG - chr2_2:51340833-51340852 Msa0256540:intron 45.0%
! TTGTGTGAGGGACTTTGAGA+TGG + chr2_2:51340877-51340896 None:intergenic 45.0%
TTGCAATTGTCGACGGTGAT+GGG - chr2_2:51340907-51340926 Msa0256540:intron 45.0%
ATGTTGTGATGAGACGGTTG+CGG - chr2_2:51340965-51340984 Msa0256540:intron 45.0%
TGCAGACAAAGTTGTGATGG+CGG + chr2_2:51340991-51341010 None:intergenic 45.0%
CCATCACAACTTTGTCTGCA+GGG - chr2_2:51340991-51341010 Msa0256540:intron 45.0%
CATCACAACTTTGTCTGCAG+GGG - chr2_2:51340992-51341011 Msa0256540:intron 45.0%
ATCACAACTTTGTCTGCAGG+GGG - chr2_2:51340993-51341012 Msa0256540:intron 45.0%
! TTGATGGCCTACATTGACTG+TGG - chr2_2:51341017-51341036 Msa0256540:intron 45.0%
ACAACCCTAACTAGATCCTC+TGG + chr2_2:51341050-51341069 None:intergenic 45.0%
GGTTGTAAAGGCAAGGTTGA+AGG - chr2_2:51341064-51341083 Msa0256540:intron 45.0%
AGAGGAGGATGACATATCAC+CGG + chr2_2:51341141-51341160 None:intergenic 45.0%
ATCCTCCTCTTCATCTGATG+AGG - chr2_2:51341151-51341170 Msa0256540:intron 45.0%
ACTGTCCTCATCAGATGAAG+AGG + chr2_2:51341159-51341178 None:intergenic 45.0%
CGATGACCTTGCATACTTTC+CGG + chr2_2:51341204-51341223 None:intergenic 45.0%
CACAGCAATCAAAGAGCTCT+TGG + chr2_2:51341276-51341295 None:intergenic 45.0%
GAGGATGATTGGAGCTTAGT+TGG - chr2_2:51341341-51341360 Msa0256540:CDS 45.0%
!! AACTTGTTGGCCTGTGAATG+TGG - chr2_2:51341478-51341497 Msa0256540:CDS 45.0%
CATGCAAAGATTGAACGCGG+CGG + chr2_2:51339167-51339186 None:intergenic 50.0%
GTTGAAAGCGACTTCAACGG+CGG + chr2_2:51339238-51339257 None:intergenic 50.0%
GACTTCAATTGCCTCAGCGA+CGG + chr2_2:51339269-51339288 None:intergenic 50.0%
ATTGAAGTCCTCCGTAGCTC+CGG - chr2_2:51339280-51339299 Msa0256540:three_prime_UTR 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG - chr2_2:51339631-51339650 Msa0256540:CDS 50.0%
AAGGTTCGGGGTTTAAACCC+CGG - chr2_2:51339673-51339692 Msa0256540:CDS 50.0%
!! GACGATCGATGGATTGTGCA+GGG + chr2_2:51340788-51340807 None:intergenic 50.0%
!! AGACGATCGATGGATTGTGC+AGG + chr2_2:51340789-51340808 None:intergenic 50.0%
CGCCTGGGAAGAGTAATCAA+TGG + chr2_2:51340838-51340857 None:intergenic 50.0%
TTCAACAGCAGAAGACGCCT+GGG + chr2_2:51340853-51340872 None:intergenic 50.0%
GTTGCAATTGTCGACGGTGA+TGG - chr2_2:51340906-51340925 Msa0256540:intron 50.0%
!! GACGGTGATGGGACATTCAT+CGG - chr2_2:51340918-51340937 Msa0256540:intron 50.0%
GCCATCACAACTTTGTCTGC+AGG - chr2_2:51340990-51341009 Msa0256540:intron 50.0%
CCCTGCAGACAAAGTTGTGA+TGG + chr2_2:51340994-51341013 None:intergenic 50.0%
CCCTAACTAGATCCTCTGGA+GGG + chr2_2:51341046-51341065 None:intergenic 50.0%
CCCTCCAGAGGATCTAGTTA+GGG - chr2_2:51341043-51341062 Msa0256540:intron 50.0%
ACCCTAACTAGATCCTCTGG+AGG + chr2_2:51341047-51341066 None:intergenic 50.0%
GTCCTCATCAGATGAAGAGG+AGG + chr2_2:51341156-51341175 None:intergenic 50.0%
TGCAAGGTCATCGAGCTACT+CGG - chr2_2:51341211-51341230 Msa0256540:intron 50.0%
TAACTGCAGTGTGGCTGATG+AGG - chr2_2:51341516-51341535 Msa0256540:CDS 50.0%
CGGCGGAGAGAATCTCGAAA+CGG + chr2_2:51339147-51339166 None:intergenic 55.0%
CGCCGCGTTCAATCTTTGCA+TGG - chr2_2:51339165-51339184 Msa0256540:three_prime_UTR 55.0%
ACTGACGAAACTTTCGCCGC+CGG + chr2_2:51339302-51339321 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr2_2:51339630-51339649 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr2_2:51339627-51339646 Msa0256540:CDS 55.0%
!!! GGGGGGTAAGTTTTGGAGTG+TGG - chr2_2:51340412-51340431 Msa0256540:intron 55.0%
CTTCAACAGCAGAAGACGCC+TGG + chr2_2:51340854-51340873 None:intergenic 55.0%
TTTGTCTGCAGGGGGCTTGA+TGG - chr2_2:51341001-51341020 Msa0256540:intron 55.0%
AGGGCGACCACAGTCAATGT+AGG + chr2_2:51341027-51341046 None:intergenic 55.0%
GCCCTCCAGAGGATCTAGTT+AGG - chr2_2:51341042-51341061 Msa0256540:intron 55.0%
GTCCAGCGAGGAGTTTGACA+CGG - chr2_2:51341177-51341196 Msa0256540:intron 55.0%
! CACGGTCCGGAAAGTATGCA+AGG - chr2_2:51341195-51341214 Msa0256540:intron 55.0%
GCTACTCGGCCAAGTATGTG+AGG - chr2_2:51341225-51341244 Msa0256540:intron 55.0%
GCAAAGATTGAACGCGGCGG+CGG + chr2_2:51339164-51339183 None:intergenic 60.0%
AACTTTCGCCGCCGGAGCTA+CGG + chr2_2:51339294-51339313 None:intergenic 60.0%
! TGAGGGGGCACAGAATCTCG+TGG - chr2_2:51340605-51340624 Msa0256540:intron 60.0%
GAGTGCACTGAAGCGGCCAA+TGG + chr2_2:51340766-51340785 None:intergenic 60.0%
! GTGCAGGGAGTGCACTGAAG+CGG + chr2_2:51340773-51340792 None:intergenic 60.0%
CTGATGAGGACAGTCCAGCG+AGG - chr2_2:51341165-51341184 Msa0256540:intron 60.0%
GACCGTGTCAAACTCCTCGC+TGG + chr2_2:51341182-51341201 None:intergenic 60.0%
GCGAGGAGTTTGACACGGTC+CGG - chr2_2:51341182-51341201 Msa0256540:intron 60.0%
TGCAGTGTGGCTGATGAGGC+CGG - chr2_2:51341520-51341539 Msa0256540:CDS 60.0%
! AACGTCGGCTACCGTCGCTG+AGG - chr2_2:51339255-51339274 Msa0256540:three_prime_UTR 65.0%
GAAGTCCTCCGTAGCTCCGG+CGG - chr2_2:51339283-51339302 Msa0256540:three_prime_UTR 65.0%
TGACTGTGGTCGCCCTCCAG+AGG - chr2_2:51341031-51341050 Msa0256540:intron 65.0%
TTTCGCCGCCGGAGCTACGG+AGG + chr2_2:51339291-51339310 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 51339109 51341740 51339109 ID=Msa0256540;Name=Msa0256540
chr2_2 mRNA 51339109 51341740 51339109 ID=Msa0256540-mRNA-1;Parent=Msa0256540;Name=Msa0256540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=75|1|1|1|1|1|2|319|389
chr2_2 exon 51339109 51340271 51339109 ID=Msa0256540-mRNA-1:exon:15526;Parent=Msa0256540-mRNA-1
chr2_2 exon 51341340 51341740 51341340 ID=Msa0256540-mRNA-1:exon:15525;Parent=Msa0256540-mRNA-1
chr2_2 five_prime_UTR 51341666 51341740 51341666 ID=Msa0256540-mRNA-1:five_prime_utr;Parent=Msa0256540-mRNA-1
chr2_2 CDS 51341340 51341665 51341340 ID=Msa0256540-mRNA-1:cds;Parent=Msa0256540-mRNA-1
chr2_2 CDS 51339428 51340271 51339428 ID=Msa0256540-mRNA-1:cds;Parent=Msa0256540-mRNA-1
chr2_2 three_prime_UTR 51339109 51339427 51339109 ID=Msa0256540-mRNA-1:three_prime_utr;Parent=Msa0256540-mRNA-1
Gene Sequence

>Msa0256540

ATGGAAGTTTTCTTTCTGTCACATGAGTTATCTGATCTCTGTCTCGGTAAGCCGCCGTTGAAGTCGCTTTCAACGTCGGCTACCGTCGCTGAGGCAATTGAAGTCCTCCGTAGCTCCGGCGGCGAAAGTTTCGTCAGTGTTTGGAACTGTGACCACTCTGAATTCGGTCAATGTCAATGTGTTGGGAAAATTTGTATGGTTGATGTAATTGTTTACCTTTGCAAAGAACAAAATCTTTTGTGTCCTTCCAAAGCTCTTAAGGCTTCAATTTCCAATGTTTTGAATAAGGTTGATGGTCTTGTTGTTCATCTAGAACCTTCATCTAGCTTATTGGATGCCATTGATCTCATACTTGAGGGGGCACAGAATCTCGTGGTGCCAATTTTGCAGACAAAAAAAGGTGGCCTTTCAAGGAGAAAACTGCAGCAGAAGTCATTAACAATCAACAGCCACAACGGTGTTGAGTTCTGTTGGTTAACACAAGAGGATGTGATCAGGTTCTTGCTTGGTTCCATTGGCCGCTTCAGTGCACTCCCTGCACAATCCATCGATCGTCTCAATATTATCAGCTCGGATGTGCTCTCCATTGATTACTCTTCCCAGGCGTCTTCTGCTGTTGAAGCCATCTCAAAGTCCCTCACACAACAAACTTCTGTTGCAATTGTCGACGGTGATGGGACATTCATCGGTGAGATATCACCCTTCACACTTGCATGTTGTGATGAGACGGTTGCGGCCGCCATCACAACTTTGTCTGCAGGGGGCTTGATGGCCTACATTGACTGTGGTCGCCCTCCAGAGGATCTAGTTAGGGTTGTAAAGGCAAGGTTGAAGGAAAAGAATTTGGAAAAACTGCTACAAGAGTTTACGCTTTTGACTTCTTTGACCGGTGATATGTCATCCTCCTCTTCATCTGATGAGGACAGTCCAGCGAGGAGTTTGACACGGTCCGGAAAGTATGCAAGGTCATCGAGCTACTCGGCCAAGTATGTGAGGAATGTAGAGGCTATAGTTTGTCATCCCAAGAGCTCTTTGATTGCTGTGATGATGCAAGCAATTGCTAATAGAGTGAATTACTTGTGGGTTATTGAGGATGATTGGAGCTTAGTTGGCATTGTTACTTTTTCTAATATCTTGAAGGTGTTCAAAGAGCGTTTAGAAGTTATTTAG

Protein sequence

>Msa0256540

MEVFFLSHELSDLCLGKPPLKSLSTSATVAEAIEVLRSSGGESFVSVWNCDHSEFGQCQCVGKICMVDVIVYLCKEQNLLCPSKALKASISNVLNKVDGLVVHLEPSSSLLDAIDLILEGAQNLVVPILQTKKGGLSRRKLQQKSLTINSHNGVEFCWLTQEDVIRFLLGSIGRFSALPAQSIDRLNIISSDVLSIDYSSQASSAVEAISKSLTQQTSVAIVDGDGTFIGEISPFTLACCDETVAAAITTLSAGGLMAYIDCGRPPEDLVRVVKARLKEKNLEKLLQEFTLLTSLTGDMSSSSSSDEDSPARSLTRSGKYARSSSYSAKYVRNVEAIVCHPKSSLIAVMMQAIANRVNYLWVIEDDWSLVGIVTFSNILKVFKERLEVI*