Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743360 | XP_003616056.1 | 92.500 | 200 | 3 | 1 | 1 | 188 | 1 | 200 | 1.94e-129 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743360 | sp|Q682S0|RPT2_ARATH | 66.500 | 200 | 54 | 2 | 2 | 188 | 6 | 205 | 1.58e-92 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743360 | G7K0V9 | 92.500 | 200 | 3 | 1 | 1 | 188 | 1 | 200 | 9.26e-130 | 385 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0708460 | Msa0743360 | 0.807219 | 5.623480e-50 | -8.615850e-47 |
| Msa0735650 | Msa0743360 | 0.829231 | 5.777939e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743360 | MtrunA17_Chr5g0432861 | 92.500 | 200 | 3 | 1 | 1 | 188 | 1 | 200 | 1.78e-133 | 385 |
| Msa0743360 | MtrunA17_Chr3g0108331 | 72.449 | 196 | 42 | 1 | 5 | 188 | 4 | 199 | 1.47e-101 | 303 |
| Msa0743360 | MtrunA17_Chr5g0401451 | 42.925 | 212 | 89 | 2 | 9 | 188 | 24 | 235 | 1.25e-55 | 185 |
| Msa0743360 | MtrunA17_Chr4g0053841 | 41.232 | 211 | 89 | 3 | 13 | 188 | 1 | 211 | 7.93e-52 | 174 |
| Msa0743360 | MtrunA17_Chr4g0010091 | 38.028 | 213 | 98 | 5 | 9 | 188 | 16 | 227 | 4.08e-44 | 154 |
| Msa0743360 | MtrunA17_Chr1g0195911 | 40.462 | 173 | 88 | 2 | 31 | 188 | 54 | 226 | 1.12e-42 | 150 |
| Msa0743360 | MtrunA17_Chr2g0279481 | 33.486 | 218 | 103 | 3 | 13 | 188 | 32 | 249 | 1.53e-39 | 142 |
| Msa0743360 | MtrunA17_Chr7g0268781 | 39.205 | 176 | 89 | 2 | 31 | 188 | 54 | 229 | 2.31e-39 | 141 |
| Msa0743360 | MtrunA17_Chr4g0050021 | 35.047 | 214 | 100 | 4 | 14 | 188 | 33 | 246 | 6.13e-39 | 140 |
| Msa0743360 | MtrunA17_Chr1g0206621 | 41.333 | 150 | 82 | 3 | 31 | 178 | 86 | 231 | 5.23e-36 | 125 |
| Msa0743360 | MtrunA17_Chr7g0245201 | 39.080 | 174 | 90 | 3 | 31 | 188 | 79 | 252 | 4.21e-33 | 124 |
| Msa0743360 | MtrunA17_Chr2g0303541 | 33.182 | 220 | 104 | 5 | 12 | 188 | 12 | 231 | 1.24e-32 | 122 |
| Msa0743360 | MtrunA17_Chr8g0374011 | 38.150 | 173 | 74 | 3 | 17 | 156 | 11 | 183 | 4.33e-32 | 121 |
| Msa0743360 | MtrunA17_Chr8g0382231 | 38.415 | 164 | 93 | 3 | 31 | 188 | 70 | 231 | 1.24e-30 | 117 |
| Msa0743360 | MtrunA17_Chr2g0285511 | 31.818 | 220 | 106 | 5 | 12 | 188 | 12 | 230 | 1.64e-29 | 114 |
| Msa0743360 | MtrunA17_Chr1g0191711 | 32.474 | 194 | 114 | 2 | 12 | 188 | 44 | 237 | 1.99e-29 | 113 |
| Msa0743360 | MtrunA17_Chr4g0076521 | 31.122 | 196 | 107 | 2 | 21 | 188 | 22 | 217 | 4.19e-28 | 110 |
| Msa0743360 | MtrunA17_Chr1g0150191 | 28.440 | 218 | 115 | 3 | 12 | 188 | 12 | 229 | 5.69e-28 | 109 |
| Msa0743360 | MtrunA17_Chr1g0181181 | 32.143 | 196 | 111 | 6 | 13 | 188 | 13 | 206 | 5.03e-27 | 106 |
| Msa0743360 | MtrunA17_Chr1g0207461 | 30.435 | 184 | 102 | 2 | 31 | 188 | 46 | 229 | 5.60e-27 | 106 |
| Msa0743360 | MtrunA17_Chr2g0290741 | 32.370 | 173 | 99 | 2 | 33 | 188 | 46 | 217 | 1.31e-26 | 105 |
| Msa0743360 | MtrunA17_Chr1g0199631 | 38.636 | 132 | 79 | 2 | 29 | 159 | 6 | 136 | 2.89e-26 | 104 |
| Msa0743360 | MtrunA17_Chr8g0367891 | 33.140 | 172 | 101 | 3 | 31 | 188 | 44 | 215 | 5.11e-24 | 98.2 |
| Msa0743360 | MtrunA17_Chr2g0320691 | 30.531 | 226 | 113 | 5 | 6 | 188 | 4 | 228 | 7.48e-24 | 97.8 |
| Msa0743360 | MtrunA17_Chr5g0401341 | 30.270 | 185 | 101 | 3 | 31 | 188 | 45 | 228 | 2.88e-23 | 96.3 |
| Msa0743360 | MtrunA17_Chr4g0037661 | 33.028 | 109 | 72 | 1 | 55 | 162 | 49 | 157 | 5.73e-16 | 75.1 |
| Msa0743360 | MtrunA17_Chr1g0163311 | 33.562 | 146 | 89 | 5 | 24 | 163 | 10 | 153 | 1.81e-13 | 67.8 |
| Msa0743360 | MtrunA17_Chr5g0412591 | 28.877 | 187 | 103 | 5 | 21 | 188 | 22 | 197 | 3.70e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743360 | AT2G30520.1 | 66.500 | 200 | 54 | 2 | 2 | 188 | 6 | 205 | 1.60e-93 | 284 |
| Msa0743360 | AT2G30520.2 | 73.885 | 157 | 41 | 0 | 32 | 188 | 1 | 157 | 1.23e-82 | 254 |
| Msa0743360 | AT2G30520.3 | 73.885 | 157 | 41 | 0 | 32 | 188 | 1 | 157 | 1.23e-82 | 254 |
| Msa0743360 | AT5G67385.1 | 41.232 | 211 | 93 | 4 | 9 | 188 | 9 | 219 | 4.94e-49 | 167 |
| Msa0743360 | AT5G48800.1 | 38.710 | 217 | 96 | 5 | 8 | 188 | 22 | 237 | 2.97e-44 | 155 |
| Msa0743360 | AT5G67385.4 | 40.805 | 174 | 84 | 3 | 34 | 188 | 1 | 174 | 4.86e-41 | 145 |
| Msa0743360 | AT5G67385.5 | 40.805 | 174 | 84 | 3 | 34 | 188 | 1 | 174 | 4.86e-41 | 145 |
| Msa0743360 | AT5G67385.2 | 40.805 | 174 | 84 | 3 | 34 | 188 | 1 | 174 | 4.86e-41 | 145 |
| Msa0743360 | AT5G67385.3 | 40.805 | 174 | 84 | 3 | 34 | 188 | 1 | 174 | 4.86e-41 | 145 |
| Msa0743360 | AT5G64330.2 | 34.361 | 227 | 96 | 4 | 15 | 188 | 42 | 268 | 5.54e-38 | 138 |
| Msa0743360 | AT5G64330.1 | 34.361 | 227 | 96 | 4 | 15 | 188 | 42 | 268 | 7.89e-38 | 138 |
| Msa0743360 | AT1G03010.2 | 38.728 | 173 | 88 | 2 | 31 | 188 | 27 | 196 | 2.81e-37 | 135 |
| Msa0743360 | AT1G03010.3 | 38.728 | 173 | 88 | 2 | 31 | 188 | 53 | 222 | 3.89e-37 | 135 |
| Msa0743360 | AT1G03010.1 | 35.096 | 208 | 104 | 4 | 8 | 188 | 20 | 223 | 3.95e-37 | 135 |
| Msa0743360 | AT2G47860.4 | 36.058 | 208 | 102 | 5 | 8 | 188 | 21 | 224 | 6.34e-37 | 133 |
| Msa0743360 | AT3G08570.1 | 38.983 | 177 | 89 | 3 | 31 | 188 | 52 | 228 | 1.53e-36 | 134 |
| Msa0743360 | AT2G47860.1 | 36.058 | 208 | 102 | 5 | 8 | 188 | 21 | 224 | 1.91e-36 | 134 |
| Msa0743360 | AT2G47860.6 | 38.728 | 173 | 88 | 3 | 31 | 188 | 78 | 247 | 2.93e-36 | 131 |
| Msa0743360 | AT5G64330.3 | 36.181 | 199 | 86 | 3 | 31 | 188 | 11 | 209 | 6.47e-36 | 132 |
| Msa0743360 | AT2G47860.3 | 37.173 | 191 | 101 | 4 | 13 | 188 | 61 | 247 | 8.47e-36 | 132 |
| Msa0743360 | AT3G49970.1 | 40.252 | 159 | 91 | 3 | 31 | 188 | 12 | 167 | 6.64e-35 | 128 |
| Msa0743360 | AT3G49970.2 | 40.252 | 159 | 91 | 3 | 31 | 188 | 12 | 167 | 6.64e-35 | 128 |
| Msa0743360 | AT1G30440.1 | 30.942 | 223 | 110 | 4 | 10 | 188 | 10 | 232 | 1.96e-32 | 122 |
| Msa0743360 | AT3G08660.2 | 36.364 | 165 | 96 | 3 | 31 | 188 | 52 | 214 | 7.16e-30 | 114 |
| Msa0743360 | AT3G08660.1 | 36.364 | 165 | 96 | 3 | 31 | 188 | 52 | 214 | 2.00e-29 | 114 |
| Msa0743360 | AT5G03250.1 | 39.024 | 164 | 84 | 4 | 10 | 158 | 10 | 172 | 3.76e-29 | 113 |
| Msa0743360 | AT4G31820.1 | 30.978 | 184 | 101 | 1 | 31 | 188 | 45 | 228 | 7.40e-29 | 112 |
| Msa0743360 | AT5G10250.2 | 34.314 | 204 | 112 | 6 | 6 | 188 | 27 | 229 | 8.76e-29 | 112 |
| Msa0743360 | AT5G10250.1 | 34.314 | 204 | 112 | 6 | 6 | 188 | 27 | 229 | 9.82e-29 | 112 |
| Msa0743360 | AT3G08660.3 | 35.256 | 156 | 92 | 3 | 40 | 188 | 1 | 154 | 8.55e-27 | 106 |
| Msa0743360 | AT5G13600.1 | 42.537 | 134 | 74 | 3 | 31 | 162 | 44 | 176 | 5.27e-26 | 104 |
| Msa0743360 | AT4G31820.2 | 29.714 | 175 | 97 | 1 | 40 | 188 | 1 | 175 | 6.88e-26 | 103 |
| Msa0743360 | AT2G14820.2 | 29.282 | 181 | 105 | 1 | 31 | 188 | 45 | 225 | 1.86e-25 | 102 |
| Msa0743360 | AT2G14820.1 | 29.282 | 181 | 105 | 1 | 31 | 188 | 45 | 225 | 1.86e-25 | 102 |
| Msa0743360 | AT5G47800.3 | 32.558 | 172 | 100 | 1 | 33 | 188 | 46 | 217 | 4.69e-25 | 101 |
| Msa0743360 | AT5G47800.1 | 32.558 | 172 | 100 | 1 | 33 | 188 | 46 | 217 | 4.69e-25 | 101 |
| Msa0743360 | AT5G47800.4 | 32.558 | 172 | 100 | 1 | 33 | 188 | 46 | 217 | 4.69e-25 | 101 |
| Msa0743360 | AT5G47800.2 | 32.558 | 172 | 100 | 1 | 33 | 188 | 159 | 330 | 6.31e-25 | 101 |
| Msa0743360 | AT5G48130.1 | 38.235 | 136 | 78 | 2 | 32 | 166 | 58 | 188 | 1.07e-22 | 94.7 |
| Msa0743360 | AT5G67440.2 | 30.220 | 182 | 100 | 3 | 31 | 188 | 8 | 186 | 2.10e-22 | 94.0 |
| Msa0743360 | AT5G67440.3 | 30.220 | 182 | 100 | 3 | 31 | 188 | 45 | 223 | 2.36e-22 | 94.0 |
| Msa0743360 | AT5G67440.1 | 30.220 | 182 | 100 | 3 | 31 | 188 | 45 | 223 | 2.36e-22 | 94.0 |
| Msa0743360 | AT5G66560.2 | 39.623 | 106 | 64 | 0 | 54 | 159 | 104 | 209 | 3.17e-22 | 93.2 |
| Msa0743360 | AT5G66560.4 | 40.777 | 103 | 61 | 0 | 54 | 156 | 65 | 167 | 3.86e-22 | 93.2 |
| Msa0743360 | AT5G66560.1 | 40.777 | 103 | 61 | 0 | 54 | 156 | 104 | 206 | 4.01e-22 | 93.2 |
| Msa0743360 | AT5G66560.3 | 40.777 | 103 | 61 | 0 | 54 | 156 | 75 | 177 | 4.07e-22 | 93.2 |
| Msa0743360 | AT3G50840.1 | 31.847 | 157 | 93 | 3 | 11 | 153 | 1 | 157 | 6.71e-22 | 92.4 |
| Msa0743360 | AT4G37590.1 | 28.708 | 209 | 107 | 3 | 22 | 188 | 24 | 232 | 6.91e-22 | 92.4 |
| Msa0743360 | AT3G44820.1 | 29.630 | 189 | 102 | 3 | 31 | 188 | 41 | 229 | 4.09e-21 | 90.5 |
| Msa0743360 | AT2G23050.1 | 28.571 | 182 | 105 | 4 | 31 | 188 | 45 | 225 | 8.93e-21 | 89.4 |
| Msa0743360 | AT1G67900.5 | 29.775 | 178 | 102 | 2 | 31 | 188 | 44 | 218 | 9.53e-21 | 89.4 |
| Msa0743360 | AT1G67900.1 | 29.775 | 178 | 102 | 2 | 31 | 188 | 44 | 218 | 9.53e-21 | 89.4 |
| Msa0743360 | AT1G67900.3 | 29.775 | 178 | 102 | 2 | 31 | 188 | 44 | 218 | 9.53e-21 | 89.4 |
| Msa0743360 | AT1G67900.6 | 29.775 | 178 | 102 | 2 | 31 | 188 | 44 | 218 | 9.53e-21 | 89.4 |
| Msa0743360 | AT1G67900.2 | 29.775 | 178 | 102 | 2 | 31 | 188 | 44 | 218 | 9.53e-21 | 89.4 |
| Msa0743360 | AT1G67900.4 | 29.775 | 178 | 102 | 2 | 31 | 188 | 44 | 218 | 9.53e-21 | 89.4 |
| Msa0743360 | AT3G50840.2 | 34.711 | 121 | 78 | 1 | 34 | 153 | 1 | 121 | 1.89e-20 | 88.2 |
| Msa0743360 | AT3G50840.3 | 34.711 | 121 | 78 | 1 | 34 | 153 | 1 | 121 | 1.89e-20 | 88.2 |
| Msa0743360 | AT3G19850.1 | 35.433 | 127 | 76 | 1 | 37 | 157 | 28 | 154 | 3.08e-20 | 87.8 |
| Msa0743360 | AT3G26490.2 | 27.320 | 194 | 104 | 4 | 31 | 188 | 44 | 236 | 2.69e-16 | 76.3 |
| Msa0743360 | AT3G26490.1 | 27.320 | 194 | 104 | 4 | 31 | 188 | 44 | 236 | 3.86e-16 | 75.9 |
| Msa0743360 | AT3G26490.3 | 27.320 | 194 | 104 | 4 | 31 | 188 | 44 | 236 | 3.86e-16 | 75.9 |
| Msa0743360 | AT3G26490.4 | 27.320 | 194 | 104 | 4 | 31 | 188 | 44 | 236 | 3.86e-16 | 75.9 |
| Msa0743360 | AT1G50280.2 | 37.143 | 105 | 63 | 2 | 55 | 157 | 18 | 121 | 7.59e-16 | 75.1 |
| Msa0743360 | AT1G50280.1 | 37.143 | 105 | 63 | 2 | 55 | 157 | 51 | 154 | 7.79e-16 | 75.1 |
| Msa0743360 | AT2G47860.5 | 32.075 | 106 | 57 | 2 | 98 | 188 | 1 | 106 | 9.81e-13 | 66.2 |
| Msa0743360 | AT2G47860.2 | 32.075 | 106 | 57 | 2 | 98 | 188 | 1 | 106 | 9.81e-13 | 66.2 |
Find 69 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTTCTCAAATGCTTCT+TGG | 0.136970 | 5_1:+63662320 | None:intergenic |
| AACAGTAGTACTAGTTTATA+TGG | 0.271753 | 5_1:+63663042 | None:intergenic |
| AGTACTAGTTTATATGGTTA+TGG | 0.354211 | 5_1:+63663048 | None:intergenic |
| CTACATCAGAAAGCTGATAA+TGG | 0.355121 | 5_1:-63662395 | Msa0743360:CDS |
| TTATGGTGGATTGTTGTAAT+AGG | 0.365816 | 5_1:+63663065 | None:intergenic |
| AAGAAAACCTTCAGTTCTTC+CGG | 0.369455 | 5_1:+63662186 | None:intergenic |
| CTCAAATGCTTCTTGGCCGC+CGG | 0.372426 | 5_1:+63662327 | None:intergenic |
| GTCGCCTTAACAACTCTTTC+CGG | 0.380845 | 5_1:-63662157 | Msa0743360:CDS |
| TCTCTTGCCATGGAGAGAAC+AGG | 0.413490 | 5_1:-63662938 | Msa0743360:CDS |
| AGAGAGAGTCTGCTAGGATT+AGG | 0.417337 | 5_1:+63662956 | None:intergenic |
| AACATATCAACTTTGTGTCT+TGG | 0.420123 | 5_1:-63663171 | Msa0743360:five_prime_UTR |
| TCAAATGCTTCTTGGCCGCC+GGG | 0.428728 | 5_1:+63662328 | None:intergenic |
| CAAGGAGGCGACGTTGTTGA+TGG | 0.435380 | 5_1:+63662264 | None:intergenic |
| AAAACAATAACATAAATTCA+TGG | 0.436908 | 5_1:-63662984 | Msa0743360:exon |
| CCATTGCCCTGTTCTCTCCA+TGG | 0.437876 | 5_1:+63662931 | None:intergenic |
| CTAGCCGATCACCGCCGAAT+TGG | 0.439522 | 5_1:-63662018 | Msa0743360:CDS |
| GTTCTTGACGTTGAATCCTT+CGG | 0.454031 | 5_1:-63661977 | Msa0743360:CDS |
| GAGATCTAATCTGGTGAGTT+CGG | 0.460965 | 5_1:+63662360 | None:intergenic |
| GCCGATCACCGCCGAATTGG+TGG | 0.462783 | 5_1:-63662015 | Msa0743360:CDS |
| ACGGCAATTATTAAGTGAAA+AGG | 0.465717 | 5_1:-63663195 | Msa0743360:five_prime_UTR |
| TCCACCAATTCGGCGGTGAT+CGG | 0.469096 | 5_1:+63662014 | None:intergenic |
| TTCTTGGCCGCCGGGGATGT+CGG | 0.469334 | 5_1:+63662336 | None:intergenic |
| AGTTCCTCCGTCCACCAATT+CGG | 0.472156 | 5_1:+63662004 | None:intergenic |
| GATGTCGGAGAGATCTAATC+TGG | 0.483022 | 5_1:+63662351 | None:intergenic |
| TTTGGTCTGAAATTGTTATG+TGG | 0.497692 | 5_1:+63663010 | None:intergenic |
| TAACAATGAAGTTAATCCAC+TGG | 0.499013 | 5_1:-63663100 | Msa0743360:five_prime_UTR |
| ACTAGTTTATATGGTTATGG+TGG | 0.500487 | 5_1:+63663051 | None:intergenic |
| ATGTTTAGCTCGTCGGCGAC+GGG | 0.500648 | 5_1:+63662097 | None:intergenic |
| TATTGCGATGGAAACCTTGC+CGG | 0.505679 | 5_1:-63662205 | Msa0743360:CDS |
| CTTTAGAACGACGGCGGCGC+CGG | 0.516206 | 5_1:+63662138 | None:intergenic |
| GGCGCCGGAAAGAGTTGTTA+AGG | 0.517467 | 5_1:+63662153 | None:intergenic |
| ATTGCAAACCTTTGAGCTGA+CGG | 0.518501 | 5_1:+63662054 | None:intergenic |
| AACCTTCAGTTCTTCCGGCA+AGG | 0.524836 | 5_1:+63662191 | None:intergenic |
| GAACACGGCGGCGCAGTGCA+AGG | 0.529735 | 5_1:+63662246 | None:intergenic |
| CTTTACTACAAGCAAGATAA+CGG | 0.536104 | 5_1:-63663214 | Msa0743360:five_prime_UTR |
| AATTCGGCGGTGATCGGCTA+GGG | 0.539024 | 5_1:+63662020 | None:intergenic |
| AACAATGAAGTTAATCCACT+GGG | 0.542253 | 5_1:-63663099 | Msa0743360:five_prime_UTR |
| CAATTCGGCGGTGATCGGCT+AGG | 0.550046 | 5_1:+63662019 | None:intergenic |
| AACCTTGCCGGAAGAACTGA+AGG | 0.552227 | 5_1:-63662193 | Msa0743360:CDS |
| GATGTTTAGCTCGTCGGCGA+CGG | 0.553961 | 5_1:+63662096 | None:intergenic |
| TGTTGACGCCGTCAGCTCAA+AGG | 0.556236 | 5_1:-63662062 | Msa0743360:CDS |
| GAAGGATTCAACGTCAAGAA+CGG | 0.559469 | 5_1:+63661979 | None:intergenic |
| ATTGTAACTATAACATCACT+TGG | 0.566826 | 5_1:+63662778 | None:intergenic |
| AAAGCAGCAAAATTCTGTTA+CGG | 0.569853 | 5_1:-63662304 | Msa0743360:CDS |
| TTTGACGATGTTTAGCTCGT+CGG | 0.573492 | 5_1:+63662090 | None:intergenic |
| CTCTTGCCATGGAGAGAACA+GGG | 0.575153 | 5_1:-63662937 | Msa0743360:CDS |
| TAGCAGACTCTCTCTTGCCA+TGG | 0.578808 | 5_1:-63662948 | Msa0743360:CDS |
| ATGGCAAGAGAGAGTCTGCT+AGG | 0.588044 | 5_1:+63662950 | None:intergenic |
| TTAGATCTCTCCGACATCCC+CGG | 0.590602 | 5_1:-63662346 | Msa0743360:CDS |
| AATACTCGTCAGTCATCTGA+AGG | 0.606622 | 5_1:+63662224 | None:intergenic |
| TTGTAACTATAACATCACTT+GGG | 0.608092 | 5_1:+63662779 | None:intergenic |
| ATGACTGACGAGTATTGCGA+TGG | 0.617911 | 5_1:-63662217 | Msa0743360:CDS |
| CAACATGTAACAGTTCATGC+TGG | 0.620723 | 5_1:-63662431 | Msa0743360:intron |
| CCATGGAGAGAACAGGGCAA+TGG | 0.627320 | 5_1:-63662931 | Msa0743360:intron |
| TCCTCCGTCCACCAATTCGG+CGG | 0.631139 | 5_1:+63662007 | None:intergenic |
| ATCACCGCCGAATTGGTGGA+CGG | 0.634104 | 5_1:-63662011 | Msa0743360:CDS |
| CATGTAACAGTTCATGCTGG+TGG | 0.652427 | 5_1:-63662428 | Msa0743360:intron |
| CGGCGACGGGAAGAAGCTGA+CGG | 0.652465 | 5_1:+63662110 | None:intergenic |
| GTCAGTCATCTGAAGGAACA+CGG | 0.652946 | 5_1:+63662231 | None:intergenic |
| CACGGCGGCGCAGTGCAAGG+AGG | 0.666148 | 5_1:+63662249 | None:intergenic |
| CAAATGCTTCTTGGCCGCCG+GGG | 0.667843 | 5_1:+63662329 | None:intergenic |
| TAGGTAATGTAGAACCCCAG+TGG | 0.711562 | 5_1:+63663084 | None:intergenic |
| ACGGCATGACTTTAGAACGA+CGG | 0.714547 | 5_1:+63662129 | None:intergenic |
| ACCGCCGAATTGGTGGACGG+AGG | 0.719586 | 5_1:-63662008 | Msa0743360:CDS |
| GCATGACTTTAGAACGACGG+CGG | 0.721632 | 5_1:+63662132 | None:intergenic |
| GACATGTAAGTTTGTCACTG+TGG | 0.753540 | 5_1:+63663147 | None:intergenic |
| GATCTCTCCGACATCCCCGG+CGG | 0.764164 | 5_1:-63662343 | Msa0743360:CDS |
| ACAATGAAGTTAATCCACTG+GGG | 0.781409 | 5_1:-63663098 | Msa0743360:five_prime_UTR |
| AGTCATCTGAAGGAACACGG+CGG | 0.832095 | 5_1:+63662234 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTCTTCAAATTATAAT+TGG | + | chr5_1:63662579-63662598 | None:intergenic | 10.0% |
| !!! | TTTTTTCTTCAAATTATAAT+TGG | + | chr5_1:63662579-63662598 | None:intergenic | 10.0% |
| !!! | TTATGTTATTGTTTTTCTTT+TGG | + | chr5_1:63662211-63662230 | None:intergenic | 15.0% |
| !! | AAAACAATAACATAAATTCA+TGG | - | chr5_1:63662216-63662235 | Msa0743360:CDS | 15.0% |
| !!! | TTATGTTATTGTTTTTCTTT+TGG | + | chr5_1:63662211-63662230 | None:intergenic | 15.0% |
| !! | AAAACAATAACATAAATTCA+TGG | - | chr5_1:63662216-63662235 | Msa0743360:CDS | 15.0% |
| !! | AGTACTAGTTTATATGGTTA+TGG | + | chr5_1:63662155-63662174 | None:intergenic | 25.0% |
| !! | AACAGTAGTACTAGTTTATA+TGG | + | chr5_1:63662161-63662180 | None:intergenic | 25.0% |
| ! | CTTGAAACTAAAACAACTAT+GGG | + | chr5_1:63662340-63662359 | None:intergenic | 25.0% |
| ! | ACTTGAAACTAAAACAACTA+TGG | + | chr5_1:63662341-63662360 | None:intergenic | 25.0% |
| ! | TTGTAACTATAACATCACTT+GGG | + | chr5_1:63662424-63662443 | None:intergenic | 25.0% |
| ! | ATTGTAACTATAACATCACT+TGG | + | chr5_1:63662425-63662444 | None:intergenic | 25.0% |
| !! | AGTACTAGTTTATATGGTTA+TGG | + | chr5_1:63662155-63662174 | None:intergenic | 25.0% |
| !! | AACAGTAGTACTAGTTTATA+TGG | + | chr5_1:63662161-63662180 | None:intergenic | 25.0% |
| ! | CTTGAAACTAAAACAACTAT+GGG | + | chr5_1:63662340-63662359 | None:intergenic | 25.0% |
| ! | ACTTGAAACTAAAACAACTA+TGG | + | chr5_1:63662341-63662360 | None:intergenic | 25.0% |
| ! | TTGTAACTATAACATCACTT+GGG | + | chr5_1:63662424-63662443 | None:intergenic | 25.0% |
| ! | ATTGTAACTATAACATCACT+TGG | + | chr5_1:63662425-63662444 | None:intergenic | 25.0% |
| CTTTACTACAAGCAAGATAA+CGG | - | chr5_1:63661986-63662005 | Msa0743360:CDS | 30.0% | |
| ACGGCAATTATTAAGTGAAA+AGG | - | chr5_1:63662005-63662024 | Msa0743360:CDS | 30.0% | |
| AACATATCAACTTTGTGTCT+TGG | - | chr5_1:63662029-63662048 | Msa0743360:CDS | 30.0% | |
| TAACAATGAAGTTAATCCAC+TGG | - | chr5_1:63662100-63662119 | Msa0743360:CDS | 30.0% | |
| AACAATGAAGTTAATCCACT+GGG | - | chr5_1:63662101-63662120 | Msa0743360:CDS | 30.0% | |
| !! | TTATGGTGGATTGTTGTAAT+AGG | + | chr5_1:63662138-63662157 | None:intergenic | 30.0% |
| ! | ACTAGTTTATATGGTTATGG+TGG | + | chr5_1:63662152-63662171 | None:intergenic | 30.0% |
| ! | TTTGGTCTGAAATTGTTATG+TGG | + | chr5_1:63662193-63662212 | None:intergenic | 30.0% |
| ! | TTTGTTGCTTGCATTATTTC+AGG | - | chr5_1:63662381-63662400 | Msa0743360:CDS | 30.0% |
| ! | TGGTAGTTTTTAATACCTTG+TGG | + | chr5_1:63662469-63662488 | None:intergenic | 30.0% |
| AAAGCAGCAAAATTCTGTTA+CGG | - | chr5_1:63662896-63662915 | Msa0743360:intron | 30.0% | |
| CTTTACTACAAGCAAGATAA+CGG | - | chr5_1:63661986-63662005 | Msa0743360:CDS | 30.0% | |
| ACGGCAATTATTAAGTGAAA+AGG | - | chr5_1:63662005-63662024 | Msa0743360:CDS | 30.0% | |
| AACATATCAACTTTGTGTCT+TGG | - | chr5_1:63662029-63662048 | Msa0743360:CDS | 30.0% | |
| TAACAATGAAGTTAATCCAC+TGG | - | chr5_1:63662100-63662119 | Msa0743360:CDS | 30.0% | |
| AACAATGAAGTTAATCCACT+GGG | - | chr5_1:63662101-63662120 | Msa0743360:CDS | 30.0% | |
| !! | TTATGGTGGATTGTTGTAAT+AGG | + | chr5_1:63662138-63662157 | None:intergenic | 30.0% |
| ! | ACTAGTTTATATGGTTATGG+TGG | + | chr5_1:63662152-63662171 | None:intergenic | 30.0% |
| ! | TTTGGTCTGAAATTGTTATG+TGG | + | chr5_1:63662193-63662212 | None:intergenic | 30.0% |
| ! | TTTGTTGCTTGCATTATTTC+AGG | - | chr5_1:63662381-63662400 | Msa0743360:CDS | 30.0% |
| ! | TGGTAGTTTTTAATACCTTG+TGG | + | chr5_1:63662469-63662488 | None:intergenic | 30.0% |
| AAAGCAGCAAAATTCTGTTA+CGG | - | chr5_1:63662896-63662915 | Msa0743360:intron | 30.0% | |
| ACAATGAAGTTAATCCACTG+GGG | - | chr5_1:63662102-63662121 | Msa0743360:CDS | 35.0% | |
| TGAAAGTGAAAGAGAAGAAG+AGG | + | chr5_1:63662315-63662334 | None:intergenic | 35.0% | |
| !! | GCAACGATTGACTTGAATAA+TGG | + | chr5_1:63662489-63662508 | None:intergenic | 35.0% |
| TCACAAGCACAAAACTATGA+AGG | + | chr5_1:63662712-63662731 | None:intergenic | 35.0% | |
| CTACATCAGAAAGCTGATAA+TGG | - | chr5_1:63662805-63662824 | Msa0743360:intron | 35.0% | |
| AAGAAAACCTTCAGTTCTTC+CGG | + | chr5_1:63663017-63663036 | None:intergenic | 35.0% | |
| ! | AACTGAAGGTTTTCTTTCTC+AGG | - | chr5_1:63663021-63663040 | Msa0743360:five_prime_UTR | 35.0% |
| ACAATGAAGTTAATCCACTG+GGG | - | chr5_1:63662102-63662121 | Msa0743360:CDS | 35.0% | |
| TGAAAGTGAAAGAGAAGAAG+AGG | + | chr5_1:63662315-63662334 | None:intergenic | 35.0% | |
| !! | GCAACGATTGACTTGAATAA+TGG | + | chr5_1:63662489-63662508 | None:intergenic | 35.0% |
| TCACAAGCACAAAACTATGA+AGG | + | chr5_1:63662712-63662731 | None:intergenic | 35.0% | |
| CTACATCAGAAAGCTGATAA+TGG | - | chr5_1:63662805-63662824 | Msa0743360:intron | 35.0% | |
| AAGAAAACCTTCAGTTCTTC+CGG | + | chr5_1:63663017-63663036 | None:intergenic | 35.0% | |
| ! | AACTGAAGGTTTTCTTTCTC+AGG | - | chr5_1:63663021-63663040 | Msa0743360:five_prime_UTR | 35.0% |
| GACATGTAAGTTTGTCACTG+TGG | + | chr5_1:63662056-63662075 | None:intergenic | 40.0% | |
| TACCTTGTGGAGAGAATAAG+TGG | + | chr5_1:63662456-63662475 | None:intergenic | 40.0% | |
| ! | AGAAGTCTAATCAGAAGCGT+CGG | - | chr5_1:63662676-63662695 | Msa0743360:intron | 40.0% |
| AGCACAAAACTATGAAGGTC+TGG | + | chr5_1:63662707-63662726 | None:intergenic | 40.0% | |
| CAACATGTAACAGTTCATGC+TGG | - | chr5_1:63662769-63662788 | Msa0743360:intron | 40.0% | |
| GAGATCTAATCTGGTGAGTT+CGG | + | chr5_1:63662843-63662862 | None:intergenic | 40.0% | |
| CTGCTTTCTCAAATGCTTCT+TGG | + | chr5_1:63662883-63662902 | None:intergenic | 40.0% | |
| AATACTCGTCAGTCATCTGA+AGG | + | chr5_1:63662979-63662998 | None:intergenic | 40.0% | |
| ! | TTTGACGATGTTTAGCTCGT+CGG | + | chr5_1:63663113-63663132 | None:intergenic | 40.0% |
| ATTGCAAACCTTTGAGCTGA+CGG | + | chr5_1:63663149-63663168 | None:intergenic | 40.0% | |
| GAAGGATTCAACGTCAAGAA+CGG | + | chr5_1:63663224-63663243 | None:intergenic | 40.0% | |
| GTTCTTGACGTTGAATCCTT+CGG | - | chr5_1:63663223-63663242 | Msa0743360:five_prime_UTR | 40.0% | |
| GACATGTAAGTTTGTCACTG+TGG | + | chr5_1:63662056-63662075 | None:intergenic | 40.0% | |
| TACCTTGTGGAGAGAATAAG+TGG | + | chr5_1:63662456-63662475 | None:intergenic | 40.0% | |
| ! | AGAAGTCTAATCAGAAGCGT+CGG | - | chr5_1:63662676-63662695 | Msa0743360:intron | 40.0% |
| AGCACAAAACTATGAAGGTC+TGG | + | chr5_1:63662707-63662726 | None:intergenic | 40.0% | |
| CAACATGTAACAGTTCATGC+TGG | - | chr5_1:63662769-63662788 | Msa0743360:intron | 40.0% | |
| GAGATCTAATCTGGTGAGTT+CGG | + | chr5_1:63662843-63662862 | None:intergenic | 40.0% | |
| CTGCTTTCTCAAATGCTTCT+TGG | + | chr5_1:63662883-63662902 | None:intergenic | 40.0% | |
| AATACTCGTCAGTCATCTGA+AGG | + | chr5_1:63662979-63662998 | None:intergenic | 40.0% | |
| ! | TTTGACGATGTTTAGCTCGT+CGG | + | chr5_1:63663113-63663132 | None:intergenic | 40.0% |
| ATTGCAAACCTTTGAGCTGA+CGG | + | chr5_1:63663149-63663168 | None:intergenic | 40.0% | |
| GAAGGATTCAACGTCAAGAA+CGG | + | chr5_1:63663224-63663243 | None:intergenic | 40.0% | |
| GTTCTTGACGTTGAATCCTT+CGG | - | chr5_1:63663223-63663242 | Msa0743360:five_prime_UTR | 40.0% | |
| TAGGTAATGTAGAACCCCAG+TGG | + | chr5_1:63662119-63662138 | None:intergenic | 45.0% | |
| AGAGAGAGTCTGCTAGGATT+AGG | + | chr5_1:63662247-63662266 | None:intergenic | 45.0% | |
| AGCCACTTATTCTCTCCACA+AGG | - | chr5_1:63662451-63662470 | Msa0743360:intron | 45.0% | |
| CATGTAACAGTTCATGCTGG+TGG | - | chr5_1:63662772-63662791 | Msa0743360:intron | 45.0% | |
| GATGTCGGAGAGATCTAATC+TGG | + | chr5_1:63662852-63662871 | None:intergenic | 45.0% | |
| GTCAGTCATCTGAAGGAACA+CGG | + | chr5_1:63662972-63662991 | None:intergenic | 45.0% | |
| ! | ATGACTGACGAGTATTGCGA+TGG | - | chr5_1:63662983-63663002 | Msa0743360:exon | 45.0% |
| TATTGCGATGGAAACCTTGC+CGG | - | chr5_1:63662995-63663014 | Msa0743360:five_prime_UTR | 45.0% | |
| GTCGCCTTAACAACTCTTTC+CGG | - | chr5_1:63663043-63663062 | Msa0743360:five_prime_UTR | 45.0% | |
| !! | ACGGCATGACTTTAGAACGA+CGG | + | chr5_1:63663074-63663093 | None:intergenic | 45.0% |
| TAGGTAATGTAGAACCCCAG+TGG | + | chr5_1:63662119-63662138 | None:intergenic | 45.0% | |
| AGAGAGAGTCTGCTAGGATT+AGG | + | chr5_1:63662247-63662266 | None:intergenic | 45.0% | |
| AGCCACTTATTCTCTCCACA+AGG | - | chr5_1:63662451-63662470 | Msa0743360:intron | 45.0% | |
| CATGTAACAGTTCATGCTGG+TGG | - | chr5_1:63662772-63662791 | Msa0743360:intron | 45.0% | |
| GATGTCGGAGAGATCTAATC+TGG | + | chr5_1:63662852-63662871 | None:intergenic | 45.0% | |
| GTCAGTCATCTGAAGGAACA+CGG | + | chr5_1:63662972-63662991 | None:intergenic | 45.0% | |
| ! | ATGACTGACGAGTATTGCGA+TGG | - | chr5_1:63662983-63663002 | Msa0743360:exon | 45.0% |
| TATTGCGATGGAAACCTTGC+CGG | - | chr5_1:63662995-63663014 | Msa0743360:five_prime_UTR | 45.0% | |
| GTCGCCTTAACAACTCTTTC+CGG | - | chr5_1:63663043-63663062 | Msa0743360:five_prime_UTR | 45.0% | |
| !! | ACGGCATGACTTTAGAACGA+CGG | + | chr5_1:63663074-63663093 | None:intergenic | 45.0% |
| ATGGCAAGAGAGAGTCTGCT+AGG | + | chr5_1:63662253-63662272 | None:intergenic | 50.0% | |
| TAGCAGACTCTCTCTTGCCA+TGG | - | chr5_1:63662252-63662271 | Msa0743360:CDS | 50.0% | |
| TCTCTTGCCATGGAGAGAAC+AGG | - | chr5_1:63662262-63662281 | Msa0743360:CDS | 50.0% | |
| CTCTTGCCATGGAGAGAACA+GGG | - | chr5_1:63662263-63662282 | Msa0743360:CDS | 50.0% | |
| TTAGATCTCTCCGACATCCC+CGG | - | chr5_1:63662854-63662873 | Msa0743360:intron | 50.0% | |
| AGTCATCTGAAGGAACACGG+CGG | + | chr5_1:63662969-63662988 | None:intergenic | 50.0% | |
| AACCTTGCCGGAAGAACTGA+AGG | - | chr5_1:63663007-63663026 | Msa0743360:five_prime_UTR | 50.0% | |
| AACCTTCAGTTCTTCCGGCA+AGG | + | chr5_1:63663012-63663031 | None:intergenic | 50.0% | |
| !! | GCATGACTTTAGAACGACGG+CGG | + | chr5_1:63663071-63663090 | None:intergenic | 50.0% |
| AGTTCCTCCGTCCACCAATT+CGG | + | chr5_1:63663199-63663218 | None:intergenic | 50.0% | |
| ATGGCAAGAGAGAGTCTGCT+AGG | + | chr5_1:63662253-63662272 | None:intergenic | 50.0% | |
| TAGCAGACTCTCTCTTGCCA+TGG | - | chr5_1:63662252-63662271 | Msa0743360:CDS | 50.0% | |
| TCTCTTGCCATGGAGAGAAC+AGG | - | chr5_1:63662262-63662281 | Msa0743360:CDS | 50.0% | |
| CTCTTGCCATGGAGAGAACA+GGG | - | chr5_1:63662263-63662282 | Msa0743360:CDS | 50.0% | |
| TTAGATCTCTCCGACATCCC+CGG | - | chr5_1:63662854-63662873 | Msa0743360:intron | 50.0% | |
| AGTCATCTGAAGGAACACGG+CGG | + | chr5_1:63662969-63662988 | None:intergenic | 50.0% | |
| AACCTTGCCGGAAGAACTGA+AGG | - | chr5_1:63663007-63663026 | Msa0743360:five_prime_UTR | 50.0% | |
| AACCTTCAGTTCTTCCGGCA+AGG | + | chr5_1:63663012-63663031 | None:intergenic | 50.0% | |
| !! | GCATGACTTTAGAACGACGG+CGG | + | chr5_1:63663071-63663090 | None:intergenic | 50.0% |
| AGTTCCTCCGTCCACCAATT+CGG | + | chr5_1:63663199-63663218 | None:intergenic | 50.0% | |
| CCATTGCCCTGTTCTCTCCA+TGG | + | chr5_1:63662272-63662291 | None:intergenic | 55.0% | |
| CCATGGAGAGAACAGGGCAA+TGG | - | chr5_1:63662269-63662288 | Msa0743360:CDS | 55.0% | |
| TCAAATGCTTCTTGGCCGCC+GGG | + | chr5_1:63662875-63662894 | None:intergenic | 55.0% | |
| CTCAAATGCTTCTTGGCCGC+CGG | + | chr5_1:63662876-63662895 | None:intergenic | 55.0% | |
| CAAGGAGGCGACGTTGTTGA+TGG | + | chr5_1:63662939-63662958 | None:intergenic | 55.0% | |
| ! | GGCGCCGGAAAGAGTTGTTA+AGG | + | chr5_1:63663050-63663069 | None:intergenic | 55.0% |
| ! | ATGTTTAGCTCGTCGGCGAC+GGG | + | chr5_1:63663106-63663125 | None:intergenic | 55.0% |
| ! | GATGTTTAGCTCGTCGGCGA+CGG | + | chr5_1:63663107-63663126 | None:intergenic | 55.0% |
| TGTTGACGCCGTCAGCTCAA+AGG | - | chr5_1:63663138-63663157 | Msa0743360:five_prime_UTR | 55.0% | |
| AATTCGGCGGTGATCGGCTA+GGG | + | chr5_1:63663183-63663202 | None:intergenic | 55.0% | |
| TCCACCAATTCGGCGGTGAT+CGG | + | chr5_1:63663189-63663208 | None:intergenic | 55.0% | |
| ATCACCGCCGAATTGGTGGA+CGG | - | chr5_1:63663189-63663208 | Msa0743360:five_prime_UTR | 55.0% | |
| CCATTGCCCTGTTCTCTCCA+TGG | + | chr5_1:63662272-63662291 | None:intergenic | 55.0% | |
| CCATGGAGAGAACAGGGCAA+TGG | - | chr5_1:63662269-63662288 | Msa0743360:CDS | 55.0% | |
| TCAAATGCTTCTTGGCCGCC+GGG | + | chr5_1:63662875-63662894 | None:intergenic | 55.0% | |
| CTCAAATGCTTCTTGGCCGC+CGG | + | chr5_1:63662876-63662895 | None:intergenic | 55.0% | |
| CAAGGAGGCGACGTTGTTGA+TGG | + | chr5_1:63662939-63662958 | None:intergenic | 55.0% | |
| ! | GGCGCCGGAAAGAGTTGTTA+AGG | + | chr5_1:63663050-63663069 | None:intergenic | 55.0% |
| ! | ATGTTTAGCTCGTCGGCGAC+GGG | + | chr5_1:63663106-63663125 | None:intergenic | 55.0% |
| ! | GATGTTTAGCTCGTCGGCGA+CGG | + | chr5_1:63663107-63663126 | None:intergenic | 55.0% |
| TGTTGACGCCGTCAGCTCAA+AGG | - | chr5_1:63663138-63663157 | Msa0743360:five_prime_UTR | 55.0% | |
| AATTCGGCGGTGATCGGCTA+GGG | + | chr5_1:63663183-63663202 | None:intergenic | 55.0% | |
| TCCACCAATTCGGCGGTGAT+CGG | + | chr5_1:63663189-63663208 | None:intergenic | 55.0% | |
| ATCACCGCCGAATTGGTGGA+CGG | - | chr5_1:63663189-63663208 | Msa0743360:five_prime_UTR | 55.0% | |
| CAAATGCTTCTTGGCCGCCG+GGG | + | chr5_1:63662874-63662893 | None:intergenic | 60.0% | |
| CAATTCGGCGGTGATCGGCT+AGG | + | chr5_1:63663184-63663203 | None:intergenic | 60.0% | |
| CTAGCCGATCACCGCCGAAT+TGG | - | chr5_1:63663182-63663201 | Msa0743360:five_prime_UTR | 60.0% | |
| TCCTCCGTCCACCAATTCGG+CGG | + | chr5_1:63663196-63663215 | None:intergenic | 60.0% | |
| CAAATGCTTCTTGGCCGCCG+GGG | + | chr5_1:63662874-63662893 | None:intergenic | 60.0% | |
| CAATTCGGCGGTGATCGGCT+AGG | + | chr5_1:63663184-63663203 | None:intergenic | 60.0% | |
| CTAGCCGATCACCGCCGAAT+TGG | - | chr5_1:63663182-63663201 | Msa0743360:five_prime_UTR | 60.0% | |
| TCCTCCGTCCACCAATTCGG+CGG | + | chr5_1:63663196-63663215 | None:intergenic | 60.0% | |
| GATCTCTCCGACATCCCCGG+CGG | - | chr5_1:63662857-63662876 | Msa0743360:intron | 65.0% | |
| TTCTTGGCCGCCGGGGATGT+CGG | + | chr5_1:63662867-63662886 | None:intergenic | 65.0% | |
| !! | CTTTAGAACGACGGCGGCGC+CGG | + | chr5_1:63663065-63663084 | None:intergenic | 65.0% |
| CGGCGACGGGAAGAAGCTGA+CGG | + | chr5_1:63663093-63663112 | None:intergenic | 65.0% | |
| GCCGATCACCGCCGAATTGG+TGG | - | chr5_1:63663185-63663204 | Msa0743360:five_prime_UTR | 65.0% | |
| ! | ACCGCCGAATTGGTGGACGG+AGG | - | chr5_1:63663192-63663211 | Msa0743360:five_prime_UTR | 65.0% |
| GATCTCTCCGACATCCCCGG+CGG | - | chr5_1:63662857-63662876 | Msa0743360:intron | 65.0% | |
| TTCTTGGCCGCCGGGGATGT+CGG | + | chr5_1:63662867-63662886 | None:intergenic | 65.0% | |
| !! | CTTTAGAACGACGGCGGCGC+CGG | + | chr5_1:63663065-63663084 | None:intergenic | 65.0% |
| CGGCGACGGGAAGAAGCTGA+CGG | + | chr5_1:63663093-63663112 | None:intergenic | 65.0% | |
| GCCGATCACCGCCGAATTGG+TGG | - | chr5_1:63663185-63663204 | Msa0743360:five_prime_UTR | 65.0% | |
| ! | ACCGCCGAATTGGTGGACGG+AGG | - | chr5_1:63663192-63663211 | Msa0743360:five_prime_UTR | 65.0% |
| GAACACGGCGGCGCAGTGCA+AGG | + | chr5_1:63662957-63662976 | None:intergenic | 70.0% | |
| GAACACGGCGGCGCAGTGCA+AGG | + | chr5_1:63662957-63662976 | None:intergenic | 70.0% | |
| CACGGCGGCGCAGTGCAAGG+AGG | + | chr5_1:63662954-63662973 | None:intergenic | 75.0% | |
| CACGGCGGCGCAGTGCAAGG+AGG | + | chr5_1:63662954-63662973 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 63661967 | 63663255 | 63661967 | ID=Msa0743360;Name=Msa0743360 |
| chr5_1 | mRNA | 63661967 | 63663255 | 63661967 | ID=Msa0743360-mRNA-1;Parent=Msa0743360;Name=Msa0743360-mRNA-1;_AED=0.02;_eAED=0.02;_QI=268|0.5|0.66|1|0.5|0.66|3|0|188 |
| chr5_1 | exon | 63661967 | 63662440 | 63661967 | ID=Msa0743360-mRNA-1:exon:18783;Parent=Msa0743360-mRNA-1 |
| chr5_1 | exon | 63662786 | 63662819 | 63662786 | ID=Msa0743360-mRNA-1:exon:18782;Parent=Msa0743360-mRNA-1 |
| chr5_1 | exon | 63662932 | 63663255 | 63662932 | ID=Msa0743360-mRNA-1:exon:18781;Parent=Msa0743360-mRNA-1 |
| chr5_1 | five_prime_UTR | 63662988 | 63663255 | 63662988 | ID=Msa0743360-mRNA-1:five_prime_utr;Parent=Msa0743360-mRNA-1 |
| chr5_1 | CDS | 63662932 | 63662987 | 63662932 | ID=Msa0743360-mRNA-1:cds;Parent=Msa0743360-mRNA-1 |
| chr5_1 | CDS | 63662786 | 63662819 | 63662786 | ID=Msa0743360-mRNA-1:cds;Parent=Msa0743360-mRNA-1 |
| chr5_1 | CDS | 63661967 | 63662440 | 63661967 | ID=Msa0743360-mRNA-1:cds;Parent=Msa0743360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
