Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708460 | KEH28209.1 | 83.624 | 458 | 17 | 2 | 51 | 450 | 79 | 536 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708460 | sp|Q682S0|RPT2_ARATH | 56.376 | 447 | 124 | 6 | 69 | 450 | 153 | 593 | 1.29e-164 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708460 | A0A072UEL2 | 83.624 | 458 | 17 | 2 | 51 | 450 | 79 | 536 | 0.0 | 716 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077940 | Msa0708460 | 0.803855 | 2.856160e-49 | -8.615850e-47 |
| Msa0609090 | Msa0708460 | 0.802306 | 5.972638e-49 | -8.615850e-47 |
| Msa0649800 | Msa0708460 | 0.810007 | 1.427486e-50 | -8.615850e-47 |
| Msa0691860 | Msa0708460 | 0.811904 | 5.542430e-51 | -8.615850e-47 |
| Msa0708460 | Msa0735650 | 0.896073 | 5.231510e-76 | -8.615850e-47 |
| Msa0708460 | Msa0743360 | 0.807219 | 5.623480e-50 | -8.615850e-47 |
| Msa0708460 | Msa0777590 | 0.824492 | 7.839670e-54 | -8.615850e-47 |
| Msa0708460 | Msa0814650 | 0.813300 | 2.744111e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708460 | MtrunA17_Chr5g0432861 | 83.624 | 458 | 17 | 2 | 51 | 450 | 122 | 579 | 0.0 | 715 |
| Msa0708460 | MtrunA17_Chr3g0108331 | 61.327 | 437 | 101 | 9 | 68 | 450 | 146 | 568 | 1.52e-175 | 503 |
| Msa0708460 | MtrunA17_Chr5g0401451 | 29.759 | 457 | 205 | 9 | 69 | 422 | 163 | 606 | 6.01e-58 | 201 |
| Msa0708460 | MtrunA17_Chr4g0010091 | 27.938 | 451 | 220 | 7 | 62 | 422 | 150 | 585 | 1.85e-52 | 186 |
| Msa0708460 | MtrunA17_Chr4g0053841 | 28.247 | 485 | 234 | 13 | 61 | 450 | 130 | 595 | 1.12e-49 | 178 |
| Msa0708460 | MtrunA17_Chr7g0245201 | 26.186 | 485 | 258 | 12 | 54 | 450 | 168 | 640 | 6.50e-42 | 157 |
| Msa0708460 | MtrunA17_Chr2g0320691 | 28.702 | 439 | 202 | 12 | 69 | 407 | 148 | 575 | 2.51e-36 | 141 |
| Msa0708460 | MtrunA17_Chr8g0382231 | 25.323 | 387 | 221 | 7 | 69 | 388 | 176 | 561 | 5.70e-34 | 134 |
| Msa0708460 | MtrunA17_Chr2g0279481 | 23.952 | 501 | 240 | 13 | 68 | 434 | 166 | 659 | 2.62e-29 | 121 |
| Msa0708460 | MtrunA17_Chr2g0303541 | 24.722 | 449 | 234 | 11 | 69 | 417 | 150 | 594 | 4.49e-29 | 120 |
| Msa0708460 | MtrunA17_Chr1g0181181 | 30.769 | 234 | 143 | 5 | 53 | 279 | 132 | 353 | 3.07e-28 | 117 |
| Msa0708460 | MtrunA17_Chr4g0050021 | 25.000 | 380 | 177 | 11 | 68 | 342 | 166 | 542 | 2.75e-27 | 115 |
| Msa0708460 | MtrunA17_Chr7g0268781 | 29.646 | 226 | 120 | 5 | 62 | 265 | 152 | 360 | 6.60e-26 | 110 |
| Msa0708460 | MtrunA17_Chr1g0199631 | 24.451 | 364 | 176 | 7 | 69 | 346 | 113 | 463 | 3.13e-25 | 108 |
| Msa0708460 | MtrunA17_Chr1g0195911 | 29.832 | 238 | 126 | 7 | 51 | 265 | 139 | 358 | 1.45e-24 | 106 |
| Msa0708460 | MtrunA17_Chr1g0195911 | 31.443 | 194 | 85 | 6 | 290 | 450 | 443 | 621 | 2.59e-16 | 81.3 |
| Msa0708460 | MtrunA17_Chr2g0285511 | 24.762 | 315 | 189 | 6 | 53 | 334 | 132 | 431 | 1.94e-24 | 106 |
| Msa0708460 | MtrunA17_Chr4g0076521 | 23.724 | 333 | 180 | 5 | 73 | 341 | 153 | 475 | 4.26e-23 | 102 |
| Msa0708460 | MtrunA17_Chr4g0003891 | 25.085 | 295 | 166 | 7 | 93 | 342 | 30 | 314 | 7.60e-23 | 100 |
| Msa0708460 | MtrunA17_Chr5g0412591 | 31.651 | 218 | 122 | 4 | 73 | 265 | 125 | 340 | 3.94e-22 | 99.4 |
| Msa0708460 | MtrunA17_Chr2g0332281 | 25.448 | 279 | 159 | 5 | 105 | 342 | 24 | 294 | 7.71e-21 | 94.4 |
| Msa0708460 | MtrunA17_Chr2g0290741 | 25.434 | 346 | 186 | 11 | 55 | 341 | 133 | 465 | 6.89e-19 | 89.4 |
| Msa0708460 | MtrunA17_Chr8g0374011 | 28.821 | 229 | 121 | 4 | 68 | 265 | 162 | 379 | 5.67e-18 | 86.7 |
| Msa0708460 | MtrunA17_Chr8g0367891 | 31.401 | 207 | 102 | 6 | 73 | 265 | 154 | 334 | 1.48e-16 | 82.0 |
| Msa0708460 | MtrunA17_Chr1g0207461 | 25.106 | 235 | 128 | 6 | 67 | 273 | 149 | 363 | 2.95e-16 | 81.3 |
| Msa0708460 | MtrunA17_Chr5g0401341 | 25.217 | 230 | 124 | 6 | 67 | 268 | 147 | 356 | 9.95e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0708460 | AT2G30520.2 | 56.376 | 447 | 124 | 6 | 69 | 450 | 105 | 545 | 4.18e-166 | 479 |
| Msa0708460 | AT2G30520.3 | 56.376 | 447 | 124 | 6 | 69 | 450 | 105 | 545 | 4.18e-166 | 479 |
| Msa0708460 | AT2G30520.1 | 56.376 | 447 | 124 | 6 | 69 | 450 | 153 | 593 | 1.31e-165 | 479 |
| Msa0708460 | AT5G67385.4 | 30.204 | 490 | 216 | 12 | 61 | 450 | 96 | 559 | 2.62e-57 | 198 |
| Msa0708460 | AT5G67385.5 | 30.204 | 490 | 216 | 12 | 61 | 450 | 96 | 559 | 2.62e-57 | 198 |
| Msa0708460 | AT5G67385.2 | 30.204 | 490 | 216 | 12 | 61 | 450 | 96 | 559 | 2.62e-57 | 198 |
| Msa0708460 | AT5G67385.3 | 30.204 | 490 | 216 | 12 | 61 | 450 | 96 | 559 | 2.62e-57 | 198 |
| Msa0708460 | AT5G67385.1 | 30.204 | 490 | 216 | 12 | 61 | 450 | 141 | 604 | 4.73e-57 | 198 |
| Msa0708460 | AT3G49970.1 | 29.680 | 438 | 228 | 12 | 62 | 450 | 109 | 515 | 4.88e-49 | 175 |
| Msa0708460 | AT3G49970.2 | 29.680 | 438 | 228 | 12 | 62 | 450 | 109 | 515 | 4.88e-49 | 175 |
| Msa0708460 | AT5G48800.1 | 27.753 | 454 | 193 | 8 | 69 | 422 | 164 | 582 | 2.49e-46 | 169 |
| Msa0708460 | AT5G13600.1 | 25.114 | 438 | 247 | 8 | 68 | 428 | 149 | 582 | 1.81e-33 | 133 |
| Msa0708460 | AT3G08660.3 | 25.290 | 431 | 211 | 12 | 72 | 422 | 98 | 497 | 3.92e-32 | 128 |
| Msa0708460 | AT3G08660.1 | 25.290 | 431 | 211 | 12 | 72 | 422 | 158 | 557 | 7.29e-32 | 128 |
| Msa0708460 | AT5G10250.1 | 28.061 | 392 | 224 | 11 | 69 | 406 | 174 | 561 | 9.21e-29 | 119 |
| Msa0708460 | AT5G10250.2 | 27.518 | 407 | 222 | 11 | 69 | 406 | 174 | 576 | 2.06e-28 | 118 |
| Msa0708460 | AT5G66560.4 | 26.404 | 356 | 168 | 8 | 71 | 343 | 149 | 493 | 6.82e-28 | 117 |
| Msa0708460 | AT5G66560.3 | 26.404 | 356 | 168 | 8 | 71 | 343 | 159 | 503 | 7.87e-28 | 117 |
| Msa0708460 | AT5G66560.1 | 26.404 | 356 | 168 | 8 | 71 | 343 | 188 | 532 | 1.11e-27 | 116 |
| Msa0708460 | AT3G08570.1 | 29.457 | 258 | 137 | 8 | 30 | 267 | 126 | 358 | 3.64e-26 | 112 |
| Msa0708460 | AT3G08570.1 | 29.814 | 161 | 72 | 4 | 292 | 425 | 441 | 587 | 1.36e-11 | 67.0 |
| Msa0708460 | AT3G50840.2 | 31.288 | 326 | 170 | 8 | 105 | 387 | 160 | 474 | 5.66e-26 | 110 |
| Msa0708460 | AT3G50840.3 | 31.288 | 326 | 170 | 8 | 105 | 387 | 160 | 474 | 5.66e-26 | 110 |
| Msa0708460 | AT3G50840.1 | 31.288 | 326 | 170 | 8 | 105 | 387 | 196 | 510 | 5.70e-26 | 111 |
| Msa0708460 | AT2G47860.5 | 29.565 | 230 | 125 | 7 | 55 | 265 | 23 | 234 | 8.32e-26 | 110 |
| Msa0708460 | AT2G47860.5 | 28.289 | 152 | 88 | 1 | 290 | 420 | 325 | 476 | 4.22e-12 | 68.6 |
| Msa0708460 | AT2G47860.2 | 29.565 | 230 | 125 | 7 | 55 | 265 | 23 | 234 | 8.32e-26 | 110 |
| Msa0708460 | AT2G47860.2 | 28.289 | 152 | 88 | 1 | 290 | 420 | 325 | 476 | 4.22e-12 | 68.6 |
| Msa0708460 | AT2G47860.1 | 29.565 | 230 | 125 | 7 | 55 | 265 | 141 | 352 | 1.04e-25 | 110 |
| Msa0708460 | AT2G47860.1 | 28.289 | 152 | 88 | 1 | 290 | 420 | 443 | 594 | 4.91e-12 | 68.6 |
| Msa0708460 | AT2G47860.6 | 29.060 | 234 | 129 | 7 | 51 | 265 | 160 | 375 | 1.18e-25 | 109 |
| Msa0708460 | AT2G47860.4 | 29.060 | 234 | 129 | 7 | 51 | 265 | 137 | 352 | 1.21e-25 | 108 |
| Msa0708460 | AT2G47860.3 | 29.565 | 230 | 125 | 7 | 55 | 265 | 164 | 375 | 1.28e-25 | 110 |
| Msa0708460 | AT2G47860.3 | 28.289 | 152 | 88 | 1 | 290 | 420 | 466 | 617 | 4.73e-12 | 68.6 |
| Msa0708460 | AT1G30440.1 | 30.396 | 227 | 126 | 4 | 68 | 265 | 150 | 373 | 2.32e-25 | 109 |
| Msa0708460 | AT1G30440.1 | 29.293 | 198 | 92 | 4 | 292 | 446 | 459 | 651 | 4.82e-13 | 71.6 |
| Msa0708460 | AT1G03010.2 | 29.752 | 242 | 135 | 7 | 48 | 265 | 106 | 336 | 2.83e-24 | 106 |
| Msa0708460 | AT1G03010.1 | 29.752 | 242 | 135 | 7 | 48 | 265 | 133 | 363 | 2.91e-24 | 106 |
| Msa0708460 | AT1G03010.3 | 29.752 | 242 | 135 | 7 | 48 | 265 | 132 | 362 | 3.24e-24 | 106 |
| Msa0708460 | AT2G23050.2 | 25.352 | 284 | 143 | 6 | 101 | 347 | 89 | 340 | 3.90e-22 | 97.8 |
| Msa0708460 | AT2G23050.1 | 25.352 | 284 | 143 | 6 | 101 | 347 | 205 | 456 | 1.57e-21 | 97.4 |
| Msa0708460 | AT4G31820.1 | 25.220 | 341 | 169 | 8 | 67 | 341 | 148 | 468 | 2.92e-21 | 97.1 |
| Msa0708460 | AT4G31820.2 | 25.220 | 341 | 169 | 8 | 67 | 341 | 95 | 415 | 3.18e-21 | 96.7 |
| Msa0708460 | AT3G44820.1 | 27.826 | 230 | 132 | 5 | 69 | 265 | 149 | 377 | 4.22e-21 | 96.7 |
| Msa0708460 | AT3G44820.1 | 31.858 | 113 | 60 | 2 | 292 | 387 | 460 | 572 | 6.72e-11 | 65.1 |
| Msa0708460 | AT5G64330.1 | 23.630 | 292 | 132 | 6 | 68 | 270 | 174 | 463 | 2.96e-20 | 94.4 |
| Msa0708460 | AT1G52770.1 | 23.022 | 278 | 173 | 3 | 105 | 342 | 28 | 304 | 4.87e-20 | 92.8 |
| Msa0708460 | AT5G64330.2 | 23.630 | 292 | 132 | 6 | 68 | 270 | 174 | 463 | 5.33e-20 | 93.2 |
| Msa0708460 | AT5G64330.3 | 23.630 | 292 | 132 | 6 | 68 | 270 | 115 | 404 | 5.97e-20 | 93.2 |
| Msa0708460 | AT5G67440.2 | 23.768 | 345 | 174 | 9 | 67 | 341 | 114 | 439 | 9.83e-20 | 92.0 |
| Msa0708460 | AT3G15570.1 | 24.567 | 289 | 159 | 5 | 105 | 342 | 29 | 309 | 1.02e-19 | 91.7 |
| Msa0708460 | AT5G67440.3 | 23.768 | 345 | 174 | 9 | 67 | 341 | 151 | 476 | 1.16e-19 | 92.0 |
| Msa0708460 | AT5G67440.1 | 23.768 | 345 | 174 | 9 | 67 | 341 | 151 | 476 | 1.16e-19 | 92.0 |
| Msa0708460 | AT5G03250.2 | 25.806 | 248 | 138 | 5 | 53 | 265 | 20 | 256 | 3.91e-19 | 90.1 |
| Msa0708460 | AT5G47800.3 | 23.611 | 360 | 197 | 7 | 62 | 354 | 141 | 489 | 5.47e-19 | 90.1 |
| Msa0708460 | AT5G47800.1 | 23.611 | 360 | 197 | 7 | 62 | 354 | 141 | 489 | 5.47e-19 | 90.1 |
| Msa0708460 | AT5G47800.4 | 23.611 | 360 | 197 | 7 | 62 | 354 | 141 | 489 | 5.47e-19 | 90.1 |
| Msa0708460 | AT5G47800.2 | 23.611 | 360 | 197 | 7 | 62 | 354 | 254 | 602 | 5.79e-19 | 90.1 |
| Msa0708460 | AT5G03250.1 | 25.806 | 248 | 138 | 5 | 53 | 265 | 132 | 368 | 5.92e-19 | 90.1 |
| Msa0708460 | AT4G37590.1 | 23.636 | 330 | 174 | 9 | 67 | 341 | 159 | 465 | 8.82e-19 | 89.4 |
| Msa0708460 | AT5G66560.2 | 27.386 | 241 | 127 | 6 | 71 | 274 | 188 | 417 | 3.52e-17 | 84.0 |
| Msa0708460 | AT3G08660.2 | 25.359 | 209 | 119 | 6 | 72 | 267 | 158 | 342 | 4.00e-16 | 80.5 |
| Msa0708460 | AT1G67900.5 | 31.416 | 226 | 127 | 4 | 62 | 265 | 138 | 357 | 4.15e-15 | 78.2 |
| Msa0708460 | AT1G67900.1 | 31.416 | 226 | 127 | 4 | 62 | 265 | 138 | 357 | 4.15e-15 | 78.2 |
| Msa0708460 | AT1G67900.3 | 31.416 | 226 | 127 | 4 | 62 | 265 | 138 | 357 | 4.15e-15 | 78.2 |
| Msa0708460 | AT1G67900.6 | 31.416 | 226 | 127 | 4 | 62 | 265 | 138 | 357 | 4.15e-15 | 78.2 |
| Msa0708460 | AT1G67900.2 | 31.416 | 226 | 127 | 4 | 62 | 265 | 138 | 357 | 4.15e-15 | 78.2 |
| Msa0708460 | AT1G67900.4 | 31.416 | 226 | 127 | 4 | 62 | 265 | 138 | 357 | 4.15e-15 | 78.2 |
| Msa0708460 | AT3G03510.1 | 25.952 | 289 | 160 | 9 | 173 | 417 | 153 | 431 | 1.99e-11 | 66.2 |
Find 132 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCATTGTAATGAATTTA+TGG | 0.095941 | 4_4:-82048520 | None:intergenic |
| TCGTCTGTGTCAAAGAAATT+AGG | 0.238870 | 4_4:+82050901 | Msa0708460:CDS |
| ATGGAGAACCTTCTCCTTCT+AGG | 0.245811 | 4_4:-82050997 | None:intergenic |
| CTATAAAATGCAATTTGTTT+GGG | 0.268314 | 4_4:+82051136 | Msa0708460:three_prime_UTR |
| ACTATAAAATGCAATTTGTT+TGG | 0.275295 | 4_4:+82051135 | Msa0708460:three_prime_UTR |
| AACAGTAGTACTAGTTTATA+TGG | 0.280811 | 4_4:-82048589 | None:intergenic |
| GTATGGCGGGTTTGTTGATT+AGG | 0.296396 | 4_4:+82051181 | Msa0708460:three_prime_UTR |
| CTACGACGGCGAGAGGCTTC+TGG | 0.304375 | 4_4:+82050050 | Msa0708460:CDS |
| AGTTGAGAACGGAATTGATT+AGG | 0.327697 | 4_4:+82050782 | Msa0708460:CDS |
| AGTACTAGTTTATATGGTTA+TGG | 0.354211 | 4_4:-82048583 | None:intergenic |
| CTCAAATGCTTCTTGCCGCC+GGG | 0.355707 | 4_4:-82049298 | None:intergenic |
| ACCGGCGGCGGCAGTGGTGG+TGG | 0.361938 | 4_4:+82049775 | Msa0708460:CDS |
| TTATGGTGGATTGTTGTAAT+AGG | 0.365816 | 4_4:-82048566 | None:intergenic |
| CTCTCTTGCCATGGAGAGAC+AGG | 0.367834 | 4_4:+82048690 | Msa0708460:CDS |
| TCAACGCTCCGGCGAGTGTT+AGG | 0.376695 | 4_4:-82049708 | None:intergenic |
| TTCTGGATCTTGACAGCATT+CGG | 0.378888 | 4_4:+82050067 | Msa0708460:CDS |
| TTGTAGAATCTCACGTTGTT+CGG | 0.393991 | 4_4:-82049848 | None:intergenic |
| TCTCAAATGCTTCTTGCCGC+CGG | 0.401135 | 4_4:-82049299 | None:intergenic |
| AAACAAAATAATCTATGAAA+TGG | 0.401564 | 4_4:-82051016 | None:intergenic |
| GTCTCAGAACAAACGATTAC+CGG | 0.410250 | 4_4:+82050633 | Msa0708460:CDS |
| TGCACTTAAACTTTCATATG+AGG | 0.412052 | 4_4:+82050597 | Msa0708460:CDS |
| AACATCATCATAGTTTAGTA+TGG | 0.413333 | 4_4:+82051164 | Msa0708460:three_prime_UTR |
| AGAGAGAGTCTGCTAGGATT+AGG | 0.417337 | 4_4:-82048673 | None:intergenic |
| AACATATCAACTTTGTGTCT+TGG | 0.420123 | 4_4:+82048266 | Msa0708460:five_prime_UTR |
| CTCTTCCGCGTCACGTTCCA+CGG | 0.431169 | 4_4:-82050713 | None:intergenic |
| TGGATTTGACAAAGCCTAGA+AGG | 0.433974 | 4_4:+82050983 | Msa0708460:CDS |
| AAAACAATAACATAAATTCA+TGG | 0.436908 | 4_4:+82048645 | Msa0708460:exon |
| CTAGCCGATCACCGCCGAAT+TGG | 0.439522 | 4_4:+82049605 | Msa0708460:CDS |
| AGCTCCTCCGTCCACCAATT+CGG | 0.447590 | 4_4:-82049619 | None:intergenic |
| TTCAACGCCGGTAGCACGTT+CGG | 0.451318 | 4_4:+82050135 | Msa0708460:CDS |
| GTTCTTGACGTTGAATCCTT+CGG | 0.454031 | 4_4:+82049646 | Msa0708460:CDS |
| CTTCTCTAACTCATCAAGAT+TGG | 0.455111 | 4_4:-82050551 | None:intergenic |
| GAGATCTAATCTGGTGAGTT+CGG | 0.460965 | 4_4:-82049266 | None:intergenic |
| ACGGCAATTATTATGTGAAA+AGG | 0.462066 | 4_4:+82048242 | Msa0708460:five_prime_UTR |
| GCCGATCACCGCCGAATTGG+TGG | 0.462783 | 4_4:+82049608 | Msa0708460:CDS |
| TTCACGCTTGCACGCGCTTG+AGG | 0.467803 | 4_4:-82049959 | None:intergenic |
| TCCACCAATTCGGCGGTGAT+CGG | 0.469096 | 4_4:-82049609 | None:intergenic |
| GATCAAACCGGCGGCGGCAG+TGG | 0.470094 | 4_4:+82049769 | Msa0708460:CDS |
| TGTGTACGTATATATACGTT+TGG | 0.476284 | 4_4:+82051276 | Msa0708460:three_prime_UTR |
| CATTTCTGCATTCGTCGAAA+AGG | 0.476321 | 4_4:+82050095 | Msa0708460:CDS |
| GATGTCGGAGAGATCTAATC+TGG | 0.483022 | 4_4:-82049275 | None:intergenic |
| CATACACAGAACGGACGCTC+CGG | 0.484102 | 4_4:+82049734 | Msa0708460:CDS |
| GGCGGCGGCAGTGGTGGTGG+AGG | 0.487753 | 4_4:+82049778 | Msa0708460:CDS |
| TCCACCACCACTGCCGCCGC+CGG | 0.488230 | 4_4:-82049776 | None:intergenic |
| CTTCTTGCCGCCGGGGATGT+CGG | 0.492090 | 4_4:-82049290 | None:intergenic |
| GTTACAAACAGACGTAACTT+TGG | 0.492774 | 4_4:+82050744 | Msa0708460:CDS |
| ACCATTGCCCTGTCTCTCCA+TGG | 0.493379 | 4_4:-82048698 | None:intergenic |
| TTTGGTCTGAAATTGTTATG+TGG | 0.497692 | 4_4:-82048620 | None:intergenic |
| ACAATGCATGTAGTACAATC+TGG | 0.498695 | 4_4:-82050657 | None:intergenic |
| CAAACCGGCGGCGGCAGTGG+TGG | 0.499108 | 4_4:+82049772 | Msa0708460:CDS |
| TCATCATAGTTTAGTATGGC+GGG | 0.499235 | 4_4:+82051168 | Msa0708460:three_prime_UTR |
| ACTAGTTTATATGGTTATGG+TGG | 0.500487 | 4_4:-82048580 | None:intergenic |
| ATGTTTAGCTCGTCGGCGAC+GGG | 0.500648 | 4_4:-82049526 | None:intergenic |
| TTACAATGAAGTTAATCCAC+TGG | 0.501979 | 4_4:+82048531 | Msa0708460:five_prime_UTR |
| GGAGAAAGTGTGCAGTGTGA+TGG | 0.507183 | 4_4:+82050573 | Msa0708460:CDS |
| GTCTTTGTATCAAAGAAGAA+AGG | 0.507825 | 4_4:+82051252 | Msa0708460:three_prime_UTR |
| TAAAGATACGTCTCATATTG+AGG | 0.512243 | 4_4:+82050951 | Msa0708460:CDS |
| GTGGTGGTGGAGGAAAATTC+CGG | 0.514703 | 4_4:+82049788 | Msa0708460:CDS |
| ATTGCAAACCTTTGAGCTGA+CGG | 0.518501 | 4_4:-82049569 | None:intergenic |
| ATCAATTAAAGATAAGAAGT+GGG | 0.518668 | 4_4:+82050686 | Msa0708460:CDS |
| AAATGCAATTTGTTTGGGGT+AGG | 0.531408 | 4_4:+82051141 | Msa0708460:three_prime_UTR |
| TACAATGAAGTTAATCCACT+GGG | 0.535560 | 4_4:+82048532 | Msa0708460:five_prime_UTR |
| CTTTACTACAAGCAAGATAA+CGG | 0.536104 | 4_4:+82048223 | Msa0708460:five_prime_UTR |
| AATTCGGCGGTGATCGGCTA+GGG | 0.539024 | 4_4:-82049603 | None:intergenic |
| GATCAATTAAAGATAAGAAG+TGG | 0.542427 | 4_4:+82050685 | Msa0708460:CDS |
| GTTTCAGATTTGCAAAAGAA+CGG | 0.543872 | 4_4:+82050817 | Msa0708460:CDS |
| ATACACAGAACGGACGCTCC+GGG | 0.545952 | 4_4:+82049735 | Msa0708460:CDS |
| ACAACTTCATCGTCTAGAGT+TGG | 0.546724 | 4_4:+82050850 | Msa0708460:CDS |
| CAATTCGGCGGTGATCGGCT+AGG | 0.550046 | 4_4:-82049604 | None:intergenic |
| AAGCTGAATCCGTTCAAGAA+TGG | 0.550799 | 4_4:+82050925 | Msa0708460:CDS |
| GAGCTTGTACGTGATCAAAC+CGG | 0.552883 | 4_4:+82049757 | Msa0708460:CDS |
| GATGTTTAGCTCGTCGGCGA+CGG | 0.553961 | 4_4:-82049527 | None:intergenic |
| GAAGCAGCAAAATTCTGTTA+CGG | 0.556076 | 4_4:+82049320 | Msa0708460:CDS |
| TGTTGACGCCGTCAGCTCAA+AGG | 0.556236 | 4_4:+82049561 | Msa0708460:CDS |
| GAAGGATTCAACGTCAAGAA+CGG | 0.559469 | 4_4:-82049644 | None:intergenic |
| TTTGATCACGTACAAGCTCC+CGG | 0.560599 | 4_4:-82049753 | None:intergenic |
| TCTTTAGAACCATTCTTGAA+CGG | 0.565852 | 4_4:-82050934 | None:intergenic |
| AGACAGCAGAGGAAGTTGAT+CGG | 0.571060 | 4_4:-82049910 | None:intergenic |
| CGCGCCACGTTGTTTCATTG+CGG | 0.572972 | 4_4:-82049680 | None:intergenic |
| TTTGACGATGTTTAGCTCGT+CGG | 0.573492 | 4_4:-82049533 | None:intergenic |
| TGTGTATGTAATCAACGCTC+CGG | 0.576129 | 4_4:-82049719 | None:intergenic |
| TCAAATGCTTCTTGCCGCCG+GGG | 0.577634 | 4_4:-82049297 | None:intergenic |
| TAGCAGACTCTCTCTTGCCA+TGG | 0.578808 | 4_4:+82048681 | Msa0708460:CDS |
| TTCATCGTCTAGAGTTGGAA+AGG | 0.579264 | 4_4:+82050855 | Msa0708460:CDS |
| GATAAGAAGTGGGGCAACCG+TGG | 0.581969 | 4_4:+82050696 | Msa0708460:CDS |
| GTACGTGATCAAACCGGCGG+CGG | 0.583254 | 4_4:+82049763 | Msa0708460:CDS |
| TGACAAAGCCTAGAAGGAGA+AGG | 0.583766 | 4_4:+82050989 | Msa0708460:CDS |
| CAGAAGCCTCTCGCCGTCGT+AGG | 0.585100 | 4_4:-82050049 | None:intergenic |
| ATGGCAAGAGAGAGTCTGCT+AGG | 0.588044 | 4_4:-82048679 | None:intergenic |
| TATAAAATGCAATTTGTTTG+GGG | 0.589000 | 4_4:+82051137 | Msa0708460:three_prime_UTR |
| TTAGATCTCTCCGACATCCC+CGG | 0.590602 | 4_4:+82049280 | Msa0708460:CDS |
| ACGTCTCATATTGAGGATGT+TGG | 0.590809 | 4_4:+82050958 | Msa0708460:CDS |
| GGCAACCGTGGAACGTGACG+CGG | 0.590939 | 4_4:+82050708 | Msa0708460:CDS |
| GCATGTAGTACAATCTGGAC+CGG | 0.592690 | 4_4:-82050652 | None:intergenic |
| GTACGTATATATACGTTTGG+AGG | 0.599614 | 4_4:+82051279 | Msa0708460:three_prime_UTR |
| CATCGTCTCTCTCTTTCCGT+CGG | 0.601369 | 4_4:+82049873 | Msa0708460:CDS |
| GATTTGCAAAAGAACGGTCA+CGG | 0.603295 | 4_4:+82050823 | Msa0708460:CDS |
| AATCGGTTGAATCAGATGAC+CGG | 0.603643 | 4_4:-82049807 | None:intergenic |
| TGGAACGTGACGCGGAAGAG+AGG | 0.607120 | 4_4:+82050716 | Msa0708460:CDS |
| ATCATCATAGTTTAGTATGG+CGG | 0.608805 | 4_4:+82051167 | Msa0708460:three_prime_UTR |
| AGAGAACGAGGAGTTGAGAA+CGG | 0.616083 | 4_4:+82050771 | Msa0708460:CDS |
| TCCTCCGTCCACCAATTCGG+CGG | 0.617815 | 4_4:-82049616 | None:intergenic |
| CAACATGTAACAGTTCATGC+TGG | 0.620723 | 4_4:+82049195 | Msa0708460:intron |
| GCGAAATACCTAACACTCGC+CGG | 0.622909 | 4_4:+82049700 | Msa0708460:CDS |
| CAATCTTGATGAGTTAGAGA+AGG | 0.623085 | 4_4:+82050552 | Msa0708460:CDS |
| GCCATGGAGAGACAGGGCAA+TGG | 0.628893 | 4_4:+82048697 | Msa0708460:CDS |
| GGAAAAGCAGCTTTCTCCGA+CGG | 0.630312 | 4_4:-82049889 | None:intergenic |
| CGACGGAAAGAGAGAGACGA+TGG | 0.633783 | 4_4:-82049872 | None:intergenic |
| ATCACCGCCGAATTGGTGGA+CGG | 0.634104 | 4_4:+82049612 | Msa0708460:CDS |
| AAGTCTTTCTCTTGTCACTG+TGG | 0.639149 | 4_4:-82048290 | None:intergenic |
| TTTGGCCACGCGTTGCATGG+CGG | 0.640820 | 4_4:-82050172 | None:intergenic |
| TCATATTGAGGATGTTGGTG+TGG | 0.644673 | 4_4:+82050963 | Msa0708460:CDS |
| CATGTAACAGTTCATGCTGG+TGG | 0.652427 | 4_4:+82049198 | Msa0708460:intron |
| CGGCGACGGGAAGAAGCTGA+CGG | 0.657692 | 4_4:-82049513 | None:intergenic |
| TCTCTTGCCATGGAGAGACA+GGG | 0.666535 | 4_4:+82048691 | Msa0708460:CDS |
| CATTCACCTACGACGGCGAG+AGG | 0.670090 | 4_4:+82050043 | Msa0708460:CDS |
| TGACACAGACGAAAAGAATG+TGG | 0.672368 | 4_4:-82050890 | None:intergenic |
| TCAATTAAAGATAAGAAGTG+GGG | 0.672615 | 4_4:+82050687 | Msa0708460:CDS |
| AACTTTGGTGAGAGAGAACG+AGG | 0.672959 | 4_4:+82050759 | Msa0708460:CDS |
| AGCACCACAGTGTTCAACGC+CGG | 0.685789 | 4_4:+82050123 | Msa0708460:CDS |
| GTTCTGTCATTCACCTACGA+CGG | 0.685821 | 4_4:+82050036 | Msa0708460:CDS |
| ACCGCCGAATTGGTGGACGG+AGG | 0.689811 | 4_4:+82049615 | Msa0708460:CDS |
| TTGCAAAAGAACGGTCACGG+CGG | 0.698644 | 4_4:+82050826 | Msa0708460:CDS |
| CGTTGATTACATACACAGAA+CGG | 0.699306 | 4_4:+82049725 | Msa0708460:CDS |
| CACAACGGAGAAGACAGCAG+AGG | 0.702792 | 4_4:-82049921 | None:intergenic |
| CTTGTACGTGATCAAACCGG+CGG | 0.709540 | 4_4:+82049760 | Msa0708460:CDS |
| TAGGTAATGTAGAACCCCAG+TGG | 0.711562 | 4_4:-82048547 | None:intergenic |
| CGCGTAAGTAGATAGCACAA+CGG | 0.750439 | 4_4:-82049936 | None:intergenic |
| GATCTCTCCGACATCCCCGG+CGG | 0.762477 | 4_4:+82049283 | Msa0708460:CDS |
| ACAATGAAGTTAATCCACTG+GGG | 0.765630 | 4_4:+82048533 | Msa0708460:five_prime_UTR |
| GCTACCGGCGTTGAACACTG+TGG | 0.775866 | 4_4:-82050127 | None:intergenic |
| ATCACCGCAATGAAACAACG+TGG | 0.797430 | 4_4:+82049676 | Msa0708460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTTCAAATTATAATT+GGG | - | chr4_4:82049005-82049024 | None:intergenic | 10.0% |
| !!! | TTTTTTCTTCAAATTATAAT+TGG | - | chr4_4:82049006-82049025 | None:intergenic | 10.0% |
| !!! | TTTTATATATAAGATAAAGT+TGG | - | chr4_4:82050457-82050476 | None:intergenic | 10.0% |
| !!! | TTTATGTTATTGTTTTCTTT+TGG | - | chr4_4:82048641-82048660 | None:intergenic | 15.0% |
| !! | AAAACAATAACATAAATTCA+TGG | + | chr4_4:82048645-82048664 | Msa0708460:exon | 15.0% |
| !! | AAACAAAATAATCTATGAAA+TGG | - | chr4_4:82051019-82051038 | None:intergenic | 15.0% |
| !! | ACTTCATTGTAATGAATTTA+TGG | - | chr4_4:82048523-82048542 | None:intergenic | 20.0% |
| !! | AAATGATTAATCATATTACG+AGG | + | chr4_4:82050480-82050499 | Msa0708460:intron | 20.0% |
| !! | ATCAATTAAAGATAAGAAGT+GGG | + | chr4_4:82050686-82050705 | Msa0708460:CDS | 20.0% |
| !!! | ACTATAAAATGCAATTTGTT+TGG | + | chr4_4:82051135-82051154 | Msa0708460:three_prime_UTR | 20.0% |
| !!! | CTATAAAATGCAATTTGTTT+GGG | + | chr4_4:82051136-82051155 | Msa0708460:three_prime_UTR | 20.0% |
| !!! | TATAAAATGCAATTTGTTTG+GGG | + | chr4_4:82051137-82051156 | Msa0708460:three_prime_UTR | 20.0% |
| !! | AGTACTAGTTTATATGGTTA+TGG | - | chr4_4:82048586-82048605 | None:intergenic | 25.0% |
| !! | AACAGTAGTACTAGTTTATA+TGG | - | chr4_4:82048592-82048611 | None:intergenic | 25.0% |
| ! | CTTGAAACTAAAACAACTAT+GGG | - | chr4_4:82048768-82048787 | None:intergenic | 25.0% |
| ! | ACTTGAAACTAAAACAACTA+TGG | - | chr4_4:82048769-82048788 | None:intergenic | 25.0% |
| ! | TTGTAACTATAACATCACTT+GGG | - | chr4_4:82048852-82048871 | None:intergenic | 25.0% |
| ! | ATTGTAACTATAACATCACT+TGG | - | chr4_4:82048853-82048872 | None:intergenic | 25.0% |
| !! | ATAGCTTTTAACATAACATG+TGG | + | chr4_4:82050503-82050522 | Msa0708460:intron | 25.0% |
| !! | TAGCTTTTAACATAACATGT+GGG | + | chr4_4:82050504-82050523 | Msa0708460:intron | 25.0% |
| ! | GATCAATTAAAGATAAGAAG+TGG | + | chr4_4:82050685-82050704 | Msa0708460:CDS | 25.0% |
| ! | TCAATTAAAGATAAGAAGTG+GGG | + | chr4_4:82050687-82050706 | Msa0708460:CDS | 25.0% |
| ! | AACATCATCATAGTTTAGTA+TGG | + | chr4_4:82051164-82051183 | Msa0708460:three_prime_UTR | 25.0% |
| CTTTACTACAAGCAAGATAA+CGG | + | chr4_4:82048223-82048242 | Msa0708460:five_prime_UTR | 30.0% | |
| ACGGCAATTATTATGTGAAA+AGG | + | chr4_4:82048242-82048261 | Msa0708460:five_prime_UTR | 30.0% | |
| AACATATCAACTTTGTGTCT+TGG | + | chr4_4:82048266-82048285 | Msa0708460:five_prime_UTR | 30.0% | |
| TTACAATGAAGTTAATCCAC+TGG | + | chr4_4:82048531-82048550 | Msa0708460:five_prime_UTR | 30.0% | |
| TACAATGAAGTTAATCCACT+GGG | + | chr4_4:82048532-82048551 | Msa0708460:five_prime_UTR | 30.0% | |
| !! | TTATGGTGGATTGTTGTAAT+AGG | - | chr4_4:82048569-82048588 | None:intergenic | 30.0% |
| ! | ACTAGTTTATATGGTTATGG+TGG | - | chr4_4:82048583-82048602 | None:intergenic | 30.0% |
| ! | TTTGGTCTGAAATTGTTATG+TGG | - | chr4_4:82048623-82048642 | None:intergenic | 30.0% |
| ! | TTTGTTGCTTGCATTATTTC+AGG | + | chr4_4:82048809-82048828 | Msa0708460:intron | 30.0% |
| ! | TGGTAGTTTTTAATACCTTG+TGG | - | chr4_4:82048897-82048916 | None:intergenic | 30.0% |
| !!! | TTTTGTTTCTGAATCGGAAT+CGG | - | chr4_4:82049827-82049846 | None:intergenic | 30.0% |
| !!! | TTCGGATTTTGTTTCTGAAT+CGG | - | chr4_4:82049833-82049852 | None:intergenic | 30.0% |
| TAAGATAAATATCGACAGCA+CGG | - | chr4_4:82050314-82050333 | None:intergenic | 30.0% | |
| TGCTGTCGATATTTATCTTA+AGG | + | chr4_4:82050314-82050333 | Msa0708460:intron | 30.0% | |
| CTCACTTCAGTCTTAAATAT+AGG | + | chr4_4:82050360-82050379 | Msa0708460:intron | 30.0% | |
| TGCACTTAAACTTTCATATG+AGG | + | chr4_4:82050597-82050616 | Msa0708460:CDS | 30.0% | |
| GTTTCAGATTTGCAAAAGAA+CGG | + | chr4_4:82050817-82050836 | Msa0708460:CDS | 30.0% | |
| !! | TCTTTAGAACCATTCTTGAA+CGG | - | chr4_4:82050937-82050956 | None:intergenic | 30.0% |
| TAAAGATACGTCTCATATTG+AGG | + | chr4_4:82050951-82050970 | Msa0708460:CDS | 30.0% | |
| ATCATCATAGTTTAGTATGG+CGG | + | chr4_4:82051167-82051186 | Msa0708460:three_prime_UTR | 30.0% | |
| GTCTTTGTATCAAAGAAGAA+AGG | + | chr4_4:82051252-82051271 | Msa0708460:three_prime_UTR | 30.0% | |
| TGTGTACGTATATATACGTT+TGG | + | chr4_4:82051276-82051295 | Msa0708460:three_prime_UTR | 30.0% | |
| AAGAGAGAAGAGAGAGAAAA+TGG | - | chr4_4:82048392-82048411 | None:intergenic | 35.0% | |
| TTGGTCACAACCAAAGAAAT+GGG | - | chr4_4:82048428-82048447 | None:intergenic | 35.0% | |
| TTTGGTTGTGACCAAGAAAT+TGG | + | chr4_4:82048433-82048452 | Msa0708460:intron | 35.0% | |
| TTGGTTGTGACCAAGAAATT+GGG | + | chr4_4:82048434-82048453 | Msa0708460:intron | 35.0% | |
| TGACATGTAAGTTTGTCACT+GGG | - | chr4_4:82048488-82048507 | None:intergenic | 35.0% | |
| ATGACATGTAAGTTTGTCAC+TGG | - | chr4_4:82048489-82048508 | None:intergenic | 35.0% | |
| ACAATGAAGTTAATCCACTG+GGG | + | chr4_4:82048533-82048552 | Msa0708460:five_prime_UTR | 35.0% | |
| TGAAAGTGAAAGAGAAGAAG+AGG | - | chr4_4:82048743-82048762 | None:intergenic | 35.0% | |
| !! | GCAACGATTGACTTGAATAA+TGG | - | chr4_4:82048917-82048936 | None:intergenic | 35.0% |
| TCACAAGCACAAAACTATGA+AGG | - | chr4_4:82049138-82049157 | None:intergenic | 35.0% | |
| GAAGCAGCAAAATTCTGTTA+CGG | + | chr4_4:82049320-82049339 | Msa0708460:CDS | 35.0% | |
| AAGAAAACCTTCAGTTCTTC+CGG | - | chr4_4:82049441-82049460 | None:intergenic | 35.0% | |
| ! | AACTGAAGGTTTTCTTTCTC+AGG | + | chr4_4:82049445-82049464 | Msa0708460:intron | 35.0% |
| ! | CGTTGATTACATACACAGAA+CGG | + | chr4_4:82049725-82049744 | Msa0708460:CDS | 35.0% |
| TTGTAGAATCTCACGTTGTT+CGG | - | chr4_4:82049851-82049870 | None:intergenic | 35.0% | |
| AATACCGTTGAACTTCGAAA+TGG | - | chr4_4:82050244-82050263 | None:intergenic | 35.0% | |
| ATTGCCATTCTCATTCCAAA+AGG | + | chr4_4:82050261-82050280 | Msa0708460:intron | 35.0% | |
| ! | TTAAGACTGAAGTGAGTTGA+AGG | - | chr4_4:82050356-82050375 | None:intergenic | 35.0% |
| CTTCTCTAACTCATCAAGAT+TGG | - | chr4_4:82050554-82050573 | None:intergenic | 35.0% | |
| CAATCTTGATGAGTTAGAGA+AGG | + | chr4_4:82050552-82050571 | Msa0708460:CDS | 35.0% | |
| ACAATGCATGTAGTACAATC+TGG | - | chr4_4:82050660-82050679 | None:intergenic | 35.0% | |
| GTTACAAACAGACGTAACTT+TGG | + | chr4_4:82050744-82050763 | Msa0708460:CDS | 35.0% | |
| AGTTGAGAACGGAATTGATT+AGG | + | chr4_4:82050782-82050801 | Msa0708460:CDS | 35.0% | |
| TCGTCTGTGTCAAAGAAATT+AGG | + | chr4_4:82050901-82050920 | Msa0708460:CDS | 35.0% | |
| ! | AAATGCAATTTGTTTGGGGT+AGG | + | chr4_4:82051141-82051160 | Msa0708460:three_prime_UTR | 35.0% |
| TCATCATAGTTTAGTATGGC+GGG | + | chr4_4:82051168-82051187 | Msa0708460:three_prime_UTR | 35.0% | |
| GTACGTATATATACGTTTGG+AGG | + | chr4_4:82051279-82051298 | Msa0708460:three_prime_UTR | 35.0% | |
| AAGTCTTTCTCTTGTCACTG+TGG | - | chr4_4:82048293-82048312 | None:intergenic | 40.0% | |
| TGACAAGAGAAAGACTTGTG+TGG | + | chr4_4:82048296-82048315 | Msa0708460:intron | 40.0% | |
| TGTGACCAAACTCAATTGTG+TGG | - | chr4_4:82048329-82048348 | None:intergenic | 40.0% | |
| TCTCTTCTCTCCCATTTCTT+TGG | + | chr4_4:82048415-82048434 | Msa0708460:intron | 40.0% | |
| CTTGGTCACAACCAAAGAAA+TGG | - | chr4_4:82048429-82048448 | None:intergenic | 40.0% | |
| TGTGACCAAGAAATTGGGTT+TGG | + | chr4_4:82048439-82048458 | Msa0708460:intron | 40.0% | |
| GAAAATACTTGTGTGGACCA+GGG | - | chr4_4:82048466-82048485 | None:intergenic | 40.0% | |
| TCACTGGGAAAATACTTGTG+TGG | - | chr4_4:82048473-82048492 | None:intergenic | 40.0% | |
| TACCTTGTGGAGAGAATAAG+TGG | - | chr4_4:82048884-82048903 | None:intergenic | 40.0% | |
| ! | AGAAGTCTAATCAGAAGCGT+CGG | + | chr4_4:82049102-82049121 | Msa0708460:intron | 40.0% |
| AGCACAAAACTATGAAGGTC+TGG | - | chr4_4:82049133-82049152 | None:intergenic | 40.0% | |
| CAACATGTAACAGTTCATGC+TGG | + | chr4_4:82049195-82049214 | Msa0708460:intron | 40.0% | |
| GAGATCTAATCTGGTGAGTT+CGG | - | chr4_4:82049269-82049288 | None:intergenic | 40.0% | |
| AATACTCGTCAGTCATCTGA+AGG | - | chr4_4:82049403-82049422 | None:intergenic | 40.0% | |
| ! | TTTGACGATGTTTAGCTCGT+CGG | - | chr4_4:82049536-82049555 | None:intergenic | 40.0% |
| ATTGCAAACCTTTGAGCTGA+CGG | - | chr4_4:82049572-82049591 | None:intergenic | 40.0% | |
| GAAGGATTCAACGTCAAGAA+CGG | - | chr4_4:82049647-82049666 | None:intergenic | 40.0% | |
| GTTCTTGACGTTGAATCCTT+CGG | + | chr4_4:82049646-82049665 | Msa0708460:CDS | 40.0% | |
| TGTGTATGTAATCAACGCTC+CGG | - | chr4_4:82049722-82049741 | None:intergenic | 40.0% | |
| AATCGGTTGAATCAGATGAC+CGG | - | chr4_4:82049810-82049829 | None:intergenic | 40.0% | |
| TTCTGGATCTTGACAGCATT+CGG | + | chr4_4:82050067-82050086 | Msa0708460:CDS | 40.0% | |
| CATTTCTGCATTCGTCGAAA+AGG | + | chr4_4:82050095-82050114 | Msa0708460:CDS | 40.0% | |
| CTCACCATTTCGAAGTTCAA+CGG | + | chr4_4:82050237-82050256 | Msa0708460:intron | 40.0% | |
| GTCTCAGAACAAACGATTAC+CGG | + | chr4_4:82050633-82050652 | Msa0708460:CDS | 40.0% | |
| GATTTGCAAAAGAACGGTCA+CGG | + | chr4_4:82050823-82050842 | Msa0708460:CDS | 40.0% | |
| ! | ACAACTTCATCGTCTAGAGT+TGG | + | chr4_4:82050850-82050869 | Msa0708460:CDS | 40.0% |
| ! | TTCATCGTCTAGAGTTGGAA+AGG | + | chr4_4:82050855-82050874 | Msa0708460:CDS | 40.0% |
| TGACACAGACGAAAAGAATG+TGG | - | chr4_4:82050893-82050912 | None:intergenic | 40.0% | |
| AAGCTGAATCCGTTCAAGAA+TGG | + | chr4_4:82050925-82050944 | Msa0708460:CDS | 40.0% | |
| ACGTCTCATATTGAGGATGT+TGG | + | chr4_4:82050958-82050977 | Msa0708460:CDS | 40.0% | |
| TCATATTGAGGATGTTGGTG+TGG | + | chr4_4:82050963-82050982 | Msa0708460:CDS | 40.0% | |
| TGGATTTGACAAAGCCTAGA+AGG | + | chr4_4:82050983-82051002 | Msa0708460:CDS | 40.0% | |
| CAAACTCAATTGTGTGGTCC+TGG | - | chr4_4:82048323-82048342 | None:intergenic | 45.0% | |
| CAGGACCACACAATTGAGTT+TGG | + | chr4_4:82048321-82048340 | Msa0708460:intron | 45.0% | |
| AGGGACCAAACCCAATTTCT+TGG | - | chr4_4:82048447-82048466 | None:intergenic | 45.0% | |
| ! | AAGAAATTGGGTTTGGTCCC+TGG | + | chr4_4:82048446-82048465 | Msa0708460:intron | 45.0% |
| GGAAAATACTTGTGTGGACC+AGG | - | chr4_4:82048467-82048486 | None:intergenic | 45.0% | |
| TAGGTAATGTAGAACCCCAG+TGG | - | chr4_4:82048550-82048569 | None:intergenic | 45.0% | |
| AGAGAGAGTCTGCTAGGATT+AGG | - | chr4_4:82048676-82048695 | None:intergenic | 45.0% | |
| AGCCACTTATTCTCTCCACA+AGG | + | chr4_4:82048879-82048898 | Msa0708460:intron | 45.0% | |
| CATGTAACAGTTCATGCTGG+TGG | + | chr4_4:82049198-82049217 | Msa0708460:intron | 45.0% | |
| GATGTCGGAGAGATCTAATC+TGG | - | chr4_4:82049278-82049297 | None:intergenic | 45.0% | |
| GTCAGTCATCTGAAGGAACA+CGG | - | chr4_4:82049396-82049415 | None:intergenic | 45.0% | |
| ! | ATGACTGACGAGTATTGCGA+TGG | + | chr4_4:82049407-82049426 | Msa0708460:intron | 45.0% |
| TATTGCGATGGAAACCTTGC+CGG | + | chr4_4:82049419-82049438 | Msa0708460:intron | 45.0% | |
| ATCACCGCAATGAAACAACG+TGG | + | chr4_4:82049676-82049695 | Msa0708460:CDS | 45.0% | |
| TTTGATCACGTACAAGCTCC+CGG | - | chr4_4:82049756-82049775 | None:intergenic | 45.0% | |
| GAGCTTGTACGTGATCAAAC+CGG | + | chr4_4:82049757-82049776 | Msa0708460:CDS | 45.0% | |
| ! | AGACAGCAGAGGAAGTTGAT+CGG | - | chr4_4:82049913-82049932 | None:intergenic | 45.0% |
| CGCGTAAGTAGATAGCACAA+CGG | - | chr4_4:82049939-82049958 | None:intergenic | 45.0% | |
| GTTCTGTCATTCACCTACGA+CGG | + | chr4_4:82050036-82050055 | Msa0708460:CDS | 45.0% | |
| ! | ATTTTCTCCGAACGTGCTAC+CGG | - | chr4_4:82050145-82050164 | None:intergenic | 45.0% |
| ! | TAGGTAAGCGTCCACAGTTT+TGG | - | chr4_4:82050193-82050212 | None:intergenic | 45.0% |
| CTAGCTGAGATTGCTTCCTA+CGG | + | chr4_4:82050210-82050229 | Msa0708460:intron | 45.0% | |
| !!! | TGCGCCTTTTGGAATGAGAA+TGG | - | chr4_4:82050268-82050287 | None:intergenic | 45.0% |
| ! | TCAAGTTTTCGTGCGCCTTT+TGG | - | chr4_4:82050279-82050298 | None:intergenic | 45.0% |
| GCATGTAGTACAATCTGGAC+CGG | - | chr4_4:82050655-82050674 | None:intergenic | 45.0% | |
| AACTTTGGTGAGAGAGAACG+AGG | + | chr4_4:82050759-82050778 | Msa0708460:CDS | 45.0% | |
| AGAGAACGAGGAGTTGAGAA+CGG | + | chr4_4:82050771-82050790 | Msa0708460:CDS | 45.0% | |
| TGACAAAGCCTAGAAGGAGA+AGG | + | chr4_4:82050989-82051008 | Msa0708460:CDS | 45.0% | |
| ATGGAGAACCTTCTCCTTCT+AGG | - | chr4_4:82051000-82051019 | None:intergenic | 45.0% | |
| !! | GTATGGCGGGTTTGTTGATT+AGG | + | chr4_4:82051181-82051200 | Msa0708460:three_prime_UTR | 45.0% |
| GAGAAAGACTTGTGTGGACC+AGG | + | chr4_4:82048302-82048321 | Msa0708460:intron | 50.0% | |
| ATGGCAAGAGAGAGTCTGCT+AGG | - | chr4_4:82048682-82048701 | None:intergenic | 50.0% | |
| TAGCAGACTCTCTCTTGCCA+TGG | + | chr4_4:82048681-82048700 | Msa0708460:CDS | 50.0% | |
| TCTCTTGCCATGGAGAGACA+GGG | + | chr4_4:82048691-82048710 | Msa0708460:CDS | 50.0% | |
| TTAGATCTCTCCGACATCCC+CGG | + | chr4_4:82049280-82049299 | Msa0708460:CDS | 50.0% | |
| TCTCAAATGCTTCTTGCCGC+CGG | - | chr4_4:82049302-82049321 | None:intergenic | 50.0% | |
| AGTCATCTGAAGGAACACGG+CGG | - | chr4_4:82049393-82049412 | None:intergenic | 50.0% | |
| AACCTTGCCGGAAGAACTGA+AGG | + | chr4_4:82049431-82049450 | Msa0708460:intron | 50.0% | |
| AACCTTCAGTTCTTCCGGCA+AGG | - | chr4_4:82049436-82049455 | None:intergenic | 50.0% | |
| !! | CCATGACTTTAGAACGACGG+CGG | - | chr4_4:82049493-82049512 | None:intergenic | 50.0% |
| !! | CGGCCATGACTTTAGAACGA+CGG | - | chr4_4:82049496-82049515 | None:intergenic | 50.0% |
| !! | TGCGGTGATCACTTTTCCGA+AGG | - | chr4_4:82049665-82049684 | None:intergenic | 50.0% |
| GCGAAATACCTAACACTCGC+CGG | + | chr4_4:82049700-82049719 | Msa0708460:CDS | 50.0% | |
| CTTGTACGTGATCAAACCGG+CGG | + | chr4_4:82049760-82049779 | Msa0708460:CDS | 50.0% | |
| !! | GTGGTGGTGGAGGAAAATTC+CGG | + | chr4_4:82049788-82049807 | Msa0708460:CDS | 50.0% |
| CATCGTCTCTCTCTTTCCGT+CGG | + | chr4_4:82049873-82049892 | Msa0708460:CDS | 50.0% | |
| GGAAAAGCAGCTTTCTCCGA+CGG | - | chr4_4:82049892-82049911 | None:intergenic | 50.0% | |
| CGTAGGAAGCAATCTCAGCT+AGG | - | chr4_4:82050212-82050231 | None:intergenic | 50.0% | |
| CGAAATGGTGAGTTCTCCGT+AGG | - | chr4_4:82050229-82050248 | None:intergenic | 50.0% | |
| ! | GGAGAAAGTGTGCAGTGTGA+TGG | + | chr4_4:82050573-82050592 | Msa0708460:CDS | 50.0% |
| TTGCAAAAGAACGGTCACGG+CGG | + | chr4_4:82050826-82050845 | Msa0708460:CDS | 50.0% | |
| CTCTCTTGCCATGGAGAGAC+AGG | + | chr4_4:82048690-82048709 | Msa0708460:CDS | 55.0% | |
| ACCATTGCCCTGTCTCTCCA+TGG | - | chr4_4:82048701-82048720 | None:intergenic | 55.0% | |
| TCAAATGCTTCTTGCCGCCG+GGG | - | chr4_4:82049300-82049319 | None:intergenic | 55.0% | |
| CTCAAATGCTTCTTGCCGCC+GGG | - | chr4_4:82049301-82049320 | None:intergenic | 55.0% | |
| CAAGGAGGCGACGTTGTTGA+TGG | - | chr4_4:82049363-82049382 | None:intergenic | 55.0% | |
| !! | CCGCCGTCGTTCTAAAGTCA+TGG | + | chr4_4:82049490-82049509 | Msa0708460:intron | 55.0% |
| ! | ATGTTTAGCTCGTCGGCGAC+GGG | - | chr4_4:82049529-82049548 | None:intergenic | 55.0% |
| ! | GATGTTTAGCTCGTCGGCGA+CGG | - | chr4_4:82049530-82049549 | None:intergenic | 55.0% |
| TGTTGACGCCGTCAGCTCAA+AGG | + | chr4_4:82049561-82049580 | Msa0708460:CDS | 55.0% | |
| AATTCGGCGGTGATCGGCTA+GGG | - | chr4_4:82049606-82049625 | None:intergenic | 55.0% | |
| TCCACCAATTCGGCGGTGAT+CGG | - | chr4_4:82049612-82049631 | None:intergenic | 55.0% | |
| ATCACCGCCGAATTGGTGGA+CGG | + | chr4_4:82049612-82049631 | Msa0708460:CDS | 55.0% | |
| AGCTCCTCCGTCCACCAATT+CGG | - | chr4_4:82049622-82049641 | None:intergenic | 55.0% | |
| ! | CGCGCCACGTTGTTTCATTG+CGG | - | chr4_4:82049683-82049702 | None:intergenic | 55.0% |
| CATACACAGAACGGACGCTC+CGG | + | chr4_4:82049734-82049753 | Msa0708460:CDS | 55.0% | |
| ATACACAGAACGGACGCTCC+GGG | + | chr4_4:82049735-82049754 | Msa0708460:CDS | 55.0% | |
| CGACGGAAAGAGAGAGACGA+TGG | - | chr4_4:82049875-82049894 | None:intergenic | 55.0% | |
| CACAACGGAGAAGACAGCAG+AGG | - | chr4_4:82049924-82049943 | None:intergenic | 55.0% | |
| AGCACCACAGTGTTCAACGC+CGG | + | chr4_4:82050123-82050142 | Msa0708460:CDS | 55.0% | |
| TTCAACGCCGGTAGCACGTT+CGG | + | chr4_4:82050135-82050154 | Msa0708460:CDS | 55.0% | |
| !! | AGTTTTGGCCACGCGTTGCA+TGG | - | chr4_4:82050178-82050197 | None:intergenic | 55.0% |
| GTGGGCATGTGTGATGTTGC+AGG | + | chr4_4:82050522-82050541 | Msa0708460:intron | 55.0% | |
| GATAAGAAGTGGGGCAACCG+TGG | + | chr4_4:82050696-82050715 | Msa0708460:CDS | 55.0% | |
| GCCATGGAGAGACAGGGCAA+TGG | + | chr4_4:82048697-82048716 | Msa0708460:CDS | 60.0% | |
| !! | GCGGCGCGGAAAGAGTGTTA+AGG | - | chr4_4:82049474-82049493 | None:intergenic | 60.0% |
| !! | ACTTTAGAACGACGGCGGCG+CGG | - | chr4_4:82049488-82049507 | None:intergenic | 60.0% |
| CAATTCGGCGGTGATCGGCT+AGG | - | chr4_4:82049607-82049626 | None:intergenic | 60.0% | |
| CTAGCCGATCACCGCCGAAT+TGG | + | chr4_4:82049605-82049624 | Msa0708460:CDS | 60.0% | |
| TCCTCCGTCCACCAATTCGG+CGG | - | chr4_4:82049619-82049638 | None:intergenic | 60.0% | |
| TCAACGCTCCGGCGAGTGTT+AGG | - | chr4_4:82049711-82049730 | None:intergenic | 60.0% | |
| GTACGTGATCAAACCGGCGG+CGG | + | chr4_4:82049763-82049782 | Msa0708460:CDS | 60.0% | |
| TTCACGCTTGCACGCGCTTG+AGG | - | chr4_4:82049962-82049981 | None:intergenic | 60.0% | |
| CATTCACCTACGACGGCGAG+AGG | + | chr4_4:82050043-82050062 | Msa0708460:CDS | 60.0% | |
| ! | GCTACCGGCGTTGAACACTG+TGG | - | chr4_4:82050130-82050149 | None:intergenic | 60.0% |
| TTTGGCCACGCGTTGCATGG+CGG | - | chr4_4:82050175-82050194 | None:intergenic | 60.0% | |
| GCAACGCGTGGCCAAAACTG+TGG | + | chr4_4:82050179-82050198 | Msa0708460:intron | 60.0% | |
| CTCTTCCGCGTCACGTTCCA+CGG | - | chr4_4:82050716-82050735 | None:intergenic | 60.0% | |
| TGGAACGTGACGCGGAAGAG+AGG | + | chr4_4:82050716-82050735 | Msa0708460:CDS | 60.0% | |
| GATCTCTCCGACATCCCCGG+CGG | + | chr4_4:82049283-82049302 | Msa0708460:CDS | 65.0% | |
| CTTCTTGCCGCCGGGGATGT+CGG | - | chr4_4:82049293-82049312 | None:intergenic | 65.0% | |
| CGGCGACGGGAAGAAGCTGA+CGG | - | chr4_4:82049516-82049535 | None:intergenic | 65.0% | |
| GCCGATCACCGCCGAATTGG+TGG | + | chr4_4:82049608-82049627 | Msa0708460:CDS | 65.0% | |
| ! | ACCGCCGAATTGGTGGACGG+AGG | + | chr4_4:82049615-82049634 | Msa0708460:CDS | 65.0% |
| CAGAAGCCTCTCGCCGTCGT+AGG | - | chr4_4:82050052-82050071 | None:intergenic | 65.0% | |
| CTACGACGGCGAGAGGCTTC+TGG | + | chr4_4:82050050-82050069 | Msa0708460:CDS | 65.0% | |
| GGCAACCGTGGAACGTGACG+CGG | + | chr4_4:82050708-82050727 | Msa0708460:CDS | 65.0% | |
| GAACACGGCGGCGCAGTGCA+AGG | - | chr4_4:82049381-82049400 | None:intergenic | 70.0% | |
| GATCAAACCGGCGGCGGCAG+TGG | + | chr4_4:82049769-82049788 | Msa0708460:CDS | 70.0% | |
| CTCTGCCGCCATGCAACGCG+TGG | + | chr4_4:82050167-82050186 | Msa0708460:intron | 70.0% | |
| CACGGCGGCGCAGTGCAAGG+AGG | - | chr4_4:82049378-82049397 | None:intergenic | 75.0% | |
| CAAACCGGCGGCGGCAGTGG+TGG | + | chr4_4:82049772-82049791 | Msa0708460:CDS | 75.0% | |
| TCCACCACCACTGCCGCCGC+CGG | - | chr4_4:82049779-82049798 | None:intergenic | 75.0% | |
| ! | ACCGGCGGCGGCAGTGGTGG+TGG | + | chr4_4:82049775-82049794 | Msa0708460:CDS | 80.0% |
| !!! | GGCGGCGGCAGTGGTGGTGG+AGG | + | chr4_4:82049778-82049797 | Msa0708460:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 82048204 | 82051404 | 82048204 | ID=Msa0708460;Name=Msa0708460 |
| chr4_4 | mRNA | 82048204 | 82051404 | 82048204 | ID=Msa0708460-mRNA-1;Parent=Msa0708460;Name=Msa0708460-mRNA-1;_AED=0.10;_eAED=0.10;_QI=266|0.25|0.6|1|0.5|0.4|5|378|450 |
| chr4_4 | exon | 82048204 | 82048301 | 82048204 | ID=Msa0708460-mRNA-1:exon:26979;Parent=Msa0708460-mRNA-1 |
| chr4_4 | exon | 82048496 | 82048718 | 82048496 | ID=Msa0708460-mRNA-1:exon:26980;Parent=Msa0708460-mRNA-1 |
| chr4_4 | exon | 82049208 | 82049343 | 82049208 | ID=Msa0708460-mRNA-1:exon:26981;Parent=Msa0708460-mRNA-1 |
| chr4_4 | exon | 82049507 | 82050185 | 82049507 | ID=Msa0708460-mRNA-1:exon:26982;Parent=Msa0708460-mRNA-1 |
| chr4_4 | exon | 82050544 | 82051404 | 82050544 | ID=Msa0708460-mRNA-1:exon:26983;Parent=Msa0708460-mRNA-1 |
| chr4_4 | five_prime_UTR | 82048204 | 82048301 | 82048204 | ID=Msa0708460-mRNA-1:five_prime_utr;Parent=Msa0708460-mRNA-1 |
| chr4_4 | five_prime_UTR | 82048496 | 82048663 | 82048496 | ID=Msa0708460-mRNA-1:five_prime_utr;Parent=Msa0708460-mRNA-1 |
| chr4_4 | CDS | 82048664 | 82048718 | 82048664 | ID=Msa0708460-mRNA-1:cds;Parent=Msa0708460-mRNA-1 |
| chr4_4 | CDS | 82049208 | 82049343 | 82049208 | ID=Msa0708460-mRNA-1:cds;Parent=Msa0708460-mRNA-1 |
| chr4_4 | CDS | 82049507 | 82050185 | 82049507 | ID=Msa0708460-mRNA-1:cds;Parent=Msa0708460-mRNA-1 |
| chr4_4 | CDS | 82050544 | 82051026 | 82050544 | ID=Msa0708460-mRNA-1:cds;Parent=Msa0708460-mRNA-1 |
| chr4_4 | three_prime_UTR | 82051027 | 82051404 | 82051027 | ID=Msa0708460-mRNA-1:three_prime_utr;Parent=Msa0708460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
