Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735650 | XP_003616056.1 | 98.408 | 377 | 6 | 0 | 1 | 377 | 203 | 579 | 0.0 | 761 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735650 | sp|Q682S0|RPT2_ARATH | 65.306 | 392 | 115 | 5 | 1 | 377 | 208 | 593 | 1.61e-173 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735650 | G7K0V9 | 98.408 | 377 | 6 | 0 | 1 | 377 | 203 | 579 | 0.0 | 761 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0708460 | Msa0735650 | 0.896073 | 5.231510e-76 | -8.615850e-47 |
| Msa0735650 | Msa0743360 | 0.829231 | 5.777939e-55 | -8.615850e-47 |
| Msa0735650 | Msa0777590 | 0.814361 | 1.602026e-51 | -8.615850e-47 |
| Msa0735650 | Msa0814650 | 0.812107 | 5.005791e-51 | -8.615850e-47 |
| Msa0735650 | Msa1178160 | 0.800608 | 1.330511e-48 | -8.615850e-47 |
| Msa0735650 | Msa1385620 | 0.806881 | 6.632905e-50 | -8.615850e-47 |
| Msa0182640 | Msa0735650 | 0.800781 | 1.227008e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735650 | MtrunA17_Chr5g0432861 | 98.408 | 377 | 6 | 0 | 1 | 377 | 203 | 579 | 0.0 | 761 |
| Msa0735650 | MtrunA17_Chr3g0108331 | 70.942 | 382 | 91 | 7 | 1 | 377 | 202 | 568 | 0.0 | 523 |
| Msa0735650 | MtrunA17_Chr5g0401451 | 35.079 | 382 | 202 | 6 | 1 | 349 | 238 | 606 | 3.05e-68 | 226 |
| Msa0735650 | MtrunA17_Chr4g0053841 | 32.836 | 402 | 225 | 9 | 1 | 377 | 214 | 595 | 5.11e-61 | 206 |
| Msa0735650 | MtrunA17_Chr4g0010091 | 33.423 | 371 | 210 | 4 | 1 | 349 | 230 | 585 | 2.09e-60 | 205 |
| Msa0735650 | MtrunA17_Chr7g0245201 | 32.161 | 398 | 237 | 8 | 1 | 377 | 255 | 640 | 7.86e-58 | 199 |
| Msa0735650 | MtrunA17_Chr2g0303541 | 33.699 | 365 | 217 | 5 | 1 | 344 | 234 | 594 | 1.01e-55 | 193 |
| Msa0735650 | MtrunA17_Chr2g0285511 | 36.331 | 278 | 161 | 3 | 1 | 271 | 233 | 501 | 9.06e-53 | 184 |
| Msa0735650 | MtrunA17_Chr2g0320691 | 36.012 | 336 | 189 | 6 | 1 | 314 | 231 | 562 | 9.39e-53 | 185 |
| Msa0735650 | MtrunA17_Chr8g0374011 | 35.925 | 373 | 176 | 13 | 54 | 372 | 288 | 651 | 4.10e-50 | 178 |
| Msa0735650 | MtrunA17_Chr1g0181181 | 35.439 | 285 | 159 | 3 | 1 | 271 | 209 | 482 | 8.40e-50 | 176 |
| Msa0735650 | MtrunA17_Chr1g0195911 | 33.598 | 378 | 185 | 10 | 50 | 377 | 260 | 621 | 2.76e-49 | 175 |
| Msa0735650 | MtrunA17_Chr1g0199631 | 35.971 | 278 | 156 | 4 | 4 | 272 | 198 | 462 | 3.66e-48 | 171 |
| Msa0735650 | MtrunA17_Chr7g0268781 | 33.623 | 345 | 168 | 7 | 50 | 347 | 264 | 594 | 1.03e-45 | 166 |
| Msa0735650 | MtrunA17_Chr5g0412591 | 35.789 | 285 | 158 | 4 | 11 | 272 | 211 | 493 | 6.48e-45 | 163 |
| Msa0735650 | MtrunA17_Chr2g0279481 | 31.653 | 357 | 208 | 7 | 56 | 377 | 330 | 685 | 4.86e-42 | 156 |
| Msa0735650 | MtrunA17_Chr8g0382231 | 29.377 | 337 | 207 | 5 | 1 | 315 | 234 | 561 | 7.61e-42 | 155 |
| Msa0735650 | MtrunA17_Chr4g0003891 | 35.556 | 225 | 135 | 2 | 45 | 269 | 100 | 314 | 3.20e-39 | 145 |
| Msa0735650 | MtrunA17_Chr2g0332281 | 34.579 | 214 | 130 | 1 | 56 | 269 | 91 | 294 | 2.20e-38 | 142 |
| Msa0735650 | MtrunA17_Chr4g0050021 | 35.000 | 240 | 147 | 4 | 37 | 269 | 305 | 542 | 3.82e-38 | 145 |
| Msa0735650 | MtrunA17_Chr1g0207461 | 34.667 | 225 | 137 | 3 | 52 | 268 | 266 | 488 | 7.25e-35 | 135 |
| Msa0735650 | MtrunA17_Chr5g0401341 | 33.077 | 260 | 148 | 5 | 14 | 268 | 245 | 483 | 5.28e-34 | 132 |
| Msa0735650 | MtrunA17_Chr4g0076521 | 32.456 | 228 | 150 | 2 | 42 | 268 | 251 | 475 | 7.54e-33 | 129 |
| Msa0735650 | MtrunA17_Chr8g0367891 | 32.660 | 297 | 149 | 7 | 1 | 272 | 218 | 488 | 2.12e-32 | 128 |
| Msa0735650 | MtrunA17_Chr1g0191711 | 28.996 | 269 | 162 | 5 | 62 | 315 | 288 | 542 | 2.53e-31 | 124 |
| Msa0735650 | MtrunA17_Chr2g0290741 | 33.945 | 218 | 130 | 4 | 52 | 268 | 261 | 465 | 4.86e-30 | 121 |
| Msa0735650 | MtrunA17_Chr1g0150191 | 32.759 | 232 | 147 | 5 | 43 | 267 | 258 | 487 | 5.11e-29 | 118 |
| Msa0735650 | MtrunA17_Chr4g0037661 | 32.599 | 227 | 130 | 6 | 70 | 285 | 270 | 484 | 2.54e-24 | 104 |
| Msa0735650 | MtrunA17_Chr4g0023801 | 30.909 | 220 | 139 | 4 | 53 | 271 | 238 | 445 | 3.01e-22 | 98.2 |
| Msa0735650 | MtrunA17_Chr1g0163311 | 28.629 | 248 | 150 | 5 | 78 | 314 | 280 | 511 | 3.11e-20 | 92.0 |
| Msa0735650 | MtrunA17_Chr2g0280541 | 30.000 | 170 | 108 | 3 | 85 | 254 | 200 | 358 | 3.17e-18 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735650 | AT2G30520.2 | 65.306 | 392 | 115 | 5 | 1 | 377 | 160 | 545 | 7.25e-175 | 498 |
| Msa0735650 | AT2G30520.3 | 65.306 | 392 | 115 | 5 | 1 | 377 | 160 | 545 | 7.25e-175 | 498 |
| Msa0735650 | AT2G30520.1 | 65.306 | 392 | 115 | 5 | 1 | 377 | 208 | 593 | 1.63e-174 | 499 |
| Msa0735650 | AT5G67385.4 | 35.452 | 409 | 206 | 9 | 1 | 377 | 177 | 559 | 3.44e-66 | 219 |
| Msa0735650 | AT5G67385.5 | 35.452 | 409 | 206 | 9 | 1 | 377 | 177 | 559 | 3.44e-66 | 219 |
| Msa0735650 | AT5G67385.2 | 35.452 | 409 | 206 | 9 | 1 | 377 | 177 | 559 | 3.44e-66 | 219 |
| Msa0735650 | AT5G67385.3 | 35.452 | 409 | 206 | 9 | 1 | 377 | 177 | 559 | 3.44e-66 | 219 |
| Msa0735650 | AT5G67385.1 | 35.452 | 409 | 206 | 9 | 1 | 377 | 222 | 604 | 7.10e-66 | 219 |
| Msa0735650 | AT1G30440.1 | 33.176 | 425 | 224 | 8 | 1 | 373 | 235 | 651 | 6.23e-57 | 197 |
| Msa0735650 | AT5G48800.1 | 34.031 | 382 | 180 | 7 | 1 | 349 | 240 | 582 | 1.22e-56 | 195 |
| Msa0735650 | AT3G08570.1 | 34.524 | 336 | 185 | 9 | 47 | 355 | 263 | 590 | 1.19e-51 | 182 |
| Msa0735650 | AT5G13600.1 | 31.092 | 357 | 240 | 2 | 1 | 355 | 230 | 582 | 1.70e-49 | 176 |
| Msa0735650 | AT3G08660.3 | 35.000 | 320 | 171 | 10 | 56 | 349 | 189 | 497 | 1.60e-48 | 172 |
| Msa0735650 | AT3G08660.1 | 35.000 | 320 | 171 | 10 | 56 | 349 | 249 | 557 | 3.56e-48 | 172 |
| Msa0735650 | AT3G49970.1 | 32.398 | 392 | 204 | 11 | 1 | 377 | 170 | 515 | 4.42e-48 | 171 |
| Msa0735650 | AT3G49970.2 | 32.398 | 392 | 204 | 11 | 1 | 377 | 170 | 515 | 4.42e-48 | 171 |
| Msa0735650 | AT5G66560.4 | 38.023 | 263 | 145 | 4 | 11 | 270 | 246 | 493 | 8.55e-48 | 172 |
| Msa0735650 | AT5G66560.3 | 37.405 | 262 | 148 | 3 | 11 | 270 | 256 | 503 | 9.81e-48 | 171 |
| Msa0735650 | AT5G66560.1 | 38.023 | 263 | 145 | 4 | 11 | 270 | 285 | 532 | 9.85e-48 | 172 |
| Msa0735650 | AT3G44820.1 | 31.871 | 342 | 204 | 6 | 1 | 314 | 232 | 572 | 2.39e-47 | 171 |
| Msa0735650 | AT1G03010.2 | 31.762 | 403 | 192 | 11 | 1 | 347 | 199 | 574 | 3.20e-47 | 170 |
| Msa0735650 | AT1G03010.1 | 31.762 | 403 | 192 | 11 | 1 | 347 | 226 | 601 | 4.85e-47 | 169 |
| Msa0735650 | AT1G03010.3 | 31.762 | 403 | 192 | 11 | 1 | 347 | 225 | 600 | 6.11e-47 | 169 |
| Msa0735650 | AT2G47860.5 | 29.016 | 386 | 217 | 5 | 1 | 347 | 109 | 476 | 2.35e-45 | 163 |
| Msa0735650 | AT2G47860.2 | 29.016 | 386 | 217 | 5 | 1 | 347 | 109 | 476 | 2.35e-45 | 163 |
| Msa0735650 | AT3G50840.2 | 38.577 | 267 | 142 | 5 | 54 | 314 | 224 | 474 | 4.18e-45 | 163 |
| Msa0735650 | AT3G50840.3 | 38.577 | 267 | 142 | 5 | 54 | 314 | 224 | 474 | 4.18e-45 | 163 |
| Msa0735650 | AT2G47860.1 | 30.226 | 354 | 190 | 5 | 1 | 315 | 227 | 562 | 4.69e-45 | 164 |
| Msa0735650 | AT2G47860.3 | 30.226 | 354 | 190 | 5 | 1 | 315 | 250 | 585 | 6.26e-45 | 164 |
| Msa0735650 | AT3G50840.1 | 38.577 | 267 | 142 | 5 | 54 | 314 | 260 | 510 | 8.93e-45 | 162 |
| Msa0735650 | AT5G03250.2 | 31.915 | 282 | 173 | 3 | 1 | 274 | 126 | 396 | 1.84e-44 | 160 |
| Msa0735650 | AT5G03250.1 | 31.915 | 282 | 173 | 3 | 1 | 274 | 238 | 508 | 1.47e-43 | 159 |
| Msa0735650 | AT1G52770.1 | 37.220 | 223 | 128 | 3 | 56 | 276 | 101 | 313 | 1.94e-41 | 151 |
| Msa0735650 | AT3G15570.1 | 35.683 | 227 | 134 | 2 | 45 | 269 | 93 | 309 | 7.22e-40 | 147 |
| Msa0735650 | AT5G64330.1 | 35.714 | 238 | 132 | 1 | 53 | 269 | 369 | 606 | 1.62e-39 | 149 |
| Msa0735650 | AT5G64330.2 | 35.714 | 238 | 132 | 1 | 53 | 269 | 369 | 606 | 2.53e-39 | 148 |
| Msa0735650 | AT5G64330.3 | 35.714 | 238 | 132 | 1 | 53 | 269 | 310 | 547 | 3.25e-39 | 147 |
| Msa0735650 | AT1G67900.5 | 35.628 | 247 | 131 | 3 | 69 | 289 | 284 | 528 | 3.89e-37 | 142 |
| Msa0735650 | AT1G67900.1 | 35.628 | 247 | 131 | 3 | 69 | 289 | 284 | 528 | 3.89e-37 | 142 |
| Msa0735650 | AT1G67900.3 | 35.628 | 247 | 131 | 3 | 69 | 289 | 284 | 528 | 3.89e-37 | 142 |
| Msa0735650 | AT1G67900.6 | 35.628 | 247 | 131 | 3 | 69 | 289 | 284 | 528 | 3.89e-37 | 142 |
| Msa0735650 | AT1G67900.2 | 35.628 | 247 | 131 | 3 | 69 | 289 | 284 | 528 | 3.89e-37 | 142 |
| Msa0735650 | AT1G67900.4 | 35.628 | 247 | 131 | 3 | 69 | 289 | 284 | 528 | 3.89e-37 | 142 |
| Msa0735650 | AT5G10250.2 | 29.706 | 340 | 201 | 6 | 1 | 315 | 232 | 558 | 5.03e-35 | 136 |
| Msa0735650 | AT5G10250.1 | 30.723 | 332 | 193 | 7 | 1 | 315 | 232 | 543 | 1.65e-33 | 131 |
| Msa0735650 | AT2G23050.2 | 32.719 | 217 | 122 | 2 | 58 | 274 | 148 | 340 | 1.87e-32 | 125 |
| Msa0735650 | AT2G23050.1 | 32.719 | 217 | 122 | 2 | 58 | 274 | 264 | 456 | 9.65e-32 | 125 |
| Msa0735650 | AT3G26490.1 | 30.605 | 281 | 163 | 5 | 36 | 292 | 252 | 524 | 4.01e-31 | 124 |
| Msa0735650 | AT3G26490.3 | 30.605 | 281 | 163 | 5 | 36 | 292 | 252 | 524 | 4.01e-31 | 124 |
| Msa0735650 | AT3G26490.4 | 30.605 | 281 | 163 | 5 | 36 | 292 | 252 | 524 | 4.01e-31 | 124 |
| Msa0735650 | AT2G14820.2 | 32.609 | 230 | 141 | 4 | 56 | 274 | 266 | 492 | 5.46e-31 | 124 |
| Msa0735650 | AT2G14820.1 | 32.609 | 230 | 141 | 4 | 56 | 274 | 266 | 492 | 5.46e-31 | 124 |
| Msa0735650 | AT5G47800.3 | 29.956 | 227 | 154 | 2 | 57 | 281 | 266 | 489 | 1.32e-30 | 123 |
| Msa0735650 | AT5G47800.1 | 29.956 | 227 | 154 | 2 | 57 | 281 | 266 | 489 | 1.32e-30 | 123 |
| Msa0735650 | AT5G47800.4 | 29.956 | 227 | 154 | 2 | 57 | 281 | 266 | 489 | 1.32e-30 | 123 |
| Msa0735650 | AT5G47800.2 | 29.956 | 227 | 154 | 2 | 57 | 281 | 379 | 602 | 1.95e-30 | 123 |
| Msa0735650 | AT5G67440.2 | 34.112 | 214 | 136 | 3 | 56 | 268 | 230 | 439 | 2.68e-30 | 122 |
| Msa0735650 | AT5G67440.3 | 34.112 | 214 | 136 | 3 | 56 | 268 | 267 | 476 | 4.20e-30 | 121 |
| Msa0735650 | AT5G67440.1 | 34.112 | 214 | 136 | 3 | 56 | 268 | 267 | 476 | 4.20e-30 | 121 |
| Msa0735650 | AT5G66560.2 | 35.238 | 210 | 120 | 3 | 11 | 218 | 285 | 480 | 2.30e-28 | 115 |
| Msa0735650 | AT4G31820.2 | 28.082 | 292 | 183 | 6 | 45 | 333 | 203 | 470 | 4.31e-28 | 115 |
| Msa0735650 | AT4G31820.1 | 28.082 | 292 | 183 | 6 | 45 | 333 | 256 | 523 | 5.04e-28 | 115 |
| Msa0735650 | AT4G37590.1 | 33.028 | 218 | 123 | 5 | 58 | 274 | 276 | 471 | 1.52e-25 | 108 |
| Msa0735650 | AT3G08660.2 | 34.857 | 175 | 101 | 6 | 56 | 221 | 249 | 419 | 5.03e-24 | 103 |
| Msa0735650 | AT2G47860.4 | 29.661 | 236 | 130 | 4 | 1 | 218 | 227 | 444 | 2.78e-23 | 101 |
| Msa0735650 | AT2G47860.6 | 29.661 | 236 | 130 | 4 | 1 | 218 | 250 | 467 | 3.66e-23 | 100 |
| Msa0735650 | AT3G03510.1 | 27.667 | 300 | 191 | 7 | 50 | 344 | 153 | 431 | 8.40e-22 | 97.1 |
| Msa0735650 | AT3G19850.1 | 28.837 | 215 | 141 | 2 | 72 | 286 | 278 | 480 | 1.46e-19 | 90.9 |
| Msa0735650 | AT5G17580.2 | 28.270 | 237 | 150 | 4 | 48 | 276 | 241 | 465 | 3.10e-19 | 89.7 |
| Msa0735650 | AT5G17580.1 | 28.571 | 231 | 145 | 4 | 48 | 270 | 226 | 444 | 4.27e-19 | 89.4 |
| Msa0735650 | AT3G22104.1 | 30.392 | 204 | 126 | 3 | 51 | 253 | 232 | 420 | 1.05e-18 | 87.8 |
| Msa0735650 | AT3G22104.4 | 30.392 | 204 | 126 | 3 | 51 | 253 | 157 | 345 | 1.85e-18 | 87.0 |
| Msa0735650 | AT3G22104.2 | 30.392 | 204 | 126 | 3 | 51 | 253 | 157 | 345 | 1.85e-18 | 87.0 |
| Msa0735650 | AT3G22104.3 | 30.392 | 204 | 126 | 3 | 51 | 253 | 157 | 345 | 1.85e-18 | 87.0 |
| Msa0735650 | AT1G50280.1 | 30.319 | 188 | 119 | 2 | 79 | 262 | 281 | 460 | 2.05e-18 | 87.0 |
| Msa0735650 | AT1G50280.2 | 30.319 | 188 | 119 | 2 | 79 | 262 | 248 | 427 | 2.51e-18 | 86.7 |
| Msa0735650 | AT5G48130.1 | 33.962 | 106 | 70 | 0 | 162 | 267 | 363 | 468 | 1.76e-14 | 75.5 |
Find 96 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAGAACCTTCTCCTTCT+AGG | 0.245811 | 5_1:+51112746 | None:intergenic |
| TCAAGTTTACGCGCGCCTTT+TGG | 0.249001 | 5_1:+51113457 | None:intergenic |
| CTATAAAATGCAATTTGTTT+GGG | 0.268314 | 5_1:-51112607 | Msa0735650:three_prime_UTR |
| TCGTCCGTGTCAAAGAAATT+AGG | 0.274325 | 5_1:-51112842 | Msa0735650:CDS |
| ACTATAAAATGCAATTTGTT+TGG | 0.275295 | 5_1:-51112608 | Msa0735650:three_prime_UTR |
| GTATGGCGGGTTTGTTGATT+AGG | 0.296396 | 5_1:-51112562 | Msa0735650:three_prime_UTR |
| CTACGACGGCGAGAGGCTTC+TGG | 0.304375 | 5_1:-51113683 | Msa0735650:CDS |
| TGCTGTGGATATTTATCTTA+AGG | 0.339403 | 5_1:-51113419 | Msa0735650:intron |
| AGTTGAGAACGGAGTTGATT+AGG | 0.340136 | 5_1:-51112961 | Msa0735650:CDS |
| TCAACGCTCCGGCGAGAGTT+AGG | 0.356655 | 5_1:+51114025 | None:intergenic |
| TTCTGGATCTTGACAGCATT+CGG | 0.378888 | 5_1:-51113666 | Msa0735650:CDS |
| TAGGTATGCGTCGACAGTTT+TGG | 0.391061 | 5_1:+51113543 | None:intergenic |
| TTGTAGAATCTCACGTTGTT+CGG | 0.393991 | 5_1:+51113885 | None:intergenic |
| ACCGGTGGCGGAAGTGGCGG+TGG | 0.399155 | 5_1:-51113958 | Msa0735650:CDS |
| AAACAAAATAATCTATGAAA+TGG | 0.401564 | 5_1:+51112727 | None:intergenic |
| GTCTCAGAACAAACGATTAC+CGG | 0.410250 | 5_1:-51113110 | Msa0735650:CDS |
| AACATCATCATAGTTTAGTA+TGG | 0.413333 | 5_1:-51112579 | Msa0735650:three_prime_UTR |
| CTCTTCCGCGTCACGTTCCA+CGG | 0.431169 | 5_1:+51113030 | None:intergenic |
| TGGATTTGACAAAGCCTAGA+AGG | 0.433974 | 5_1:-51112760 | Msa0735650:CDS |
| TTCAACGCCGGTAGCACGTT+CGG | 0.437915 | 5_1:-51113598 | Msa0735650:CDS |
| GGTGGCGGAAGTGGCGGTGG+AGG | 0.442807 | 5_1:-51113955 | Msa0735650:CDS |
| TAAAGATACTTCTCATATTG+AGG | 0.447979 | 5_1:-51112792 | Msa0735650:CDS |
| CTTCTCTAACTCATCAAGAT+TGG | 0.455111 | 5_1:+51113192 | None:intergenic |
| TCCACCGCCACTTCCGCCAC+CGG | 0.455350 | 5_1:+51113957 | None:intergenic |
| GATCAAACCGGTGGCGGAAG+TGG | 0.457278 | 5_1:-51113964 | Msa0735650:CDS |
| GTGGCGGTGGAGGAAAATTC+CGG | 0.459010 | 5_1:-51113945 | Msa0735650:CDS |
| CGACGGAAAGAGAGGGATGA+TGG | 0.472856 | 5_1:+51113861 | None:intergenic |
| GGCGGAACAACTTCATCGTC+TGG | 0.474475 | 5_1:-51112899 | Msa0735650:CDS |
| TGTGTACGTATATATACGTT+TGG | 0.476284 | 5_1:-51112467 | Msa0735650:three_prime_UTR |
| CATCTCTGCATTCGTCGAAA+AGG | 0.477142 | 5_1:-51113638 | Msa0735650:CDS |
| GTTACAAACAGACGTAACTT+TGG | 0.492774 | 5_1:-51112999 | Msa0735650:CDS |
| TCATCATAGTTTAGTATGGC+GGG | 0.499235 | 5_1:-51112575 | Msa0735650:three_prime_UTR |
| GGAGAAAGTGTGCAGTGTGA+TGG | 0.507183 | 5_1:-51113170 | Msa0735650:CDS |
| GTCTTTGTATCAAAGAAGAA+AGG | 0.507825 | 5_1:-51112491 | Msa0735650:three_prime_UTR |
| ACAACTTCATCGTCTGGAGT+TGG | 0.509583 | 5_1:-51112893 | Msa0735650:CDS |
| CATACACAGAACGCACGCTC+CGG | 0.509693 | 5_1:-51113999 | Msa0735650:CDS |
| ATCAATTAAAGATAAGAAGT+GGG | 0.518668 | 5_1:-51113057 | Msa0735650:CDS |
| ATACACAGAACGCACGCTCC+GGG | 0.523598 | 5_1:-51113998 | Msa0735650:CDS |
| TTCTCCGTAGGAAGCAATCT+CGG | 0.531084 | 5_1:+51113519 | None:intergenic |
| AAATGCAATTTGTTTGGGGT+AGG | 0.531408 | 5_1:-51112602 | Msa0735650:three_prime_UTR |
| ACTTCTCATATTGAGGATGT+TGG | 0.531911 | 5_1:-51112785 | Msa0735650:CDS |
| ATTGCCATTCTCATTCCAAA+AGG | 0.536892 | 5_1:-51113472 | Msa0735650:CDS |
| GATCAATTAAAGATAAGAAG+TGG | 0.542427 | 5_1:-51113058 | Msa0735650:CDS |
| AATACCGTTGAACTTCGAAA+TGG | 0.548610 | 5_1:+51113492 | None:intergenic |
| AAGCTGAATCCGTTCAAGAA+TGG | 0.550799 | 5_1:-51112818 | Msa0735650:CDS |
| TTTGATCACGTACAAGCTCC+CGG | 0.560599 | 5_1:+51113980 | None:intergenic |
| TCATATTGAGGATGTTGGTG+TGG | 0.562911 | 5_1:-51112780 | Msa0735650:CDS |
| GCATGTAGCACGATCTGCAC+CGG | 0.563781 | 5_1:+51113091 | None:intergenic |
| GAGCTTGTACGTGATCAAAC+CGG | 0.567341 | 5_1:-51113976 | Msa0735650:CDS |
| TCTTTAGAACCATTCTTGAA+CGG | 0.569503 | 5_1:+51112809 | None:intergenic |
| CAAACCGGTGGCGGAAGTGG+CGG | 0.570080 | 5_1:-51113961 | Msa0735650:CDS |
| CGTAGGAAGCAATCTCGGCT+AGG | 0.574423 | 5_1:+51113524 | None:intergenic |
| TGTGTATGCAATCAACGCTC+CGG | 0.576129 | 5_1:+51114014 | None:intergenic |
| GATAAGAAGTGGGGCAACCG+TGG | 0.581969 | 5_1:-51113047 | Msa0735650:CDS |
| TGACAAAGCCTAGAAGGAGA+AGG | 0.583766 | 5_1:-51112754 | Msa0735650:CDS |
| AATCTGTTGAATCAGATGAC+CGG | 0.584338 | 5_1:+51113926 | None:intergenic |
| CAGAAGCCTCTCGCCGTCGT+AGG | 0.585100 | 5_1:+51113684 | None:intergenic |
| CTTACCTAATTTCTTTGACA+CGG | 0.586200 | 5_1:+51112838 | None:intergenic |
| TATAAAATGCAATTTGTTTG+GGG | 0.589000 | 5_1:-51112606 | Msa0735650:three_prime_UTR |
| GGCAACCGTGGAACGTGACG+CGG | 0.590939 | 5_1:-51113035 | Msa0735650:CDS |
| GCGAAATACCTAACTCTCGC+CGG | 0.591461 | 5_1:-51114033 | Msa0735650:CDS |
| CGAAATGGTGAGTTCTCCGT+AGG | 0.593883 | 5_1:+51113507 | None:intergenic |
| TTCATCGTCTGGAGTTGGAA+AGG | 0.594216 | 5_1:-51112888 | Msa0735650:CDS |
| GCTTTCTCCGACGGAAAGAG+AGG | 0.594388 | 5_1:+51113853 | None:intergenic |
| TTCACGCTTGCACGAGCTAG+AGG | 0.595491 | 5_1:+51113774 | None:intergenic |
| GTACGTATATATACGTTTGG+AGG | 0.599614 | 5_1:-51112464 | Msa0735650:three_prime_UTR |
| GTACGTGATCAAACCGGTGG+CGG | 0.600315 | 5_1:-51113970 | Msa0735650:CDS |
| GTTTCCGATTTGCAAAAGAA+CGG | 0.601100 | 5_1:-51112926 | Msa0735650:CDS |
| AGACAACAGAGGAAGTTGAT+CGG | 0.601162 | 5_1:+51113823 | None:intergenic |
| CATCATCCCTCTCTTTCCGT+CGG | 0.601315 | 5_1:-51113860 | Msa0735650:CDS |
| TGGAACGTGACGCGGAAGAG+AGG | 0.607120 | 5_1:-51113027 | Msa0735650:CDS |
| CTCACCATTTCGAAGTTCAA+CGG | 0.607753 | 5_1:-51113496 | Msa0735650:CDS |
| CGATGATCTTTACCGTGCTG+TGG | 0.608339 | 5_1:-51113434 | Msa0735650:CDS |
| ATCATCATAGTTTAGTATGG+CGG | 0.608805 | 5_1:-51112576 | Msa0735650:three_prime_UTR |
| AGAGAACGAGGAGTTGAGAA+CGG | 0.616083 | 5_1:-51112972 | Msa0735650:CDS |
| GATTTGCAAAAGAACGGTCA+CGG | 0.617357 | 5_1:-51112920 | Msa0735650:CDS |
| CTAGCCGAGATTGCTTCCTA+CGG | 0.619708 | 5_1:-51113523 | Msa0735650:CDS |
| CAATCTTGATGAGTTAGAGA+AGG | 0.623085 | 5_1:-51113191 | Msa0735650:CDS |
| CTTTCTCCGACGGAAAGAGA+GGG | 0.629923 | 5_1:+51113854 | None:intergenic |
| GGAAAAGCAGCTTTCTCCGA+CGG | 0.630312 | 5_1:+51113844 | None:intergenic |
| AGCACCACGGTATTCAACGC+CGG | 0.658363 | 5_1:-51113610 | Msa0735650:CDS |
| TTTGGCTACGCGTTGCATGG+CGG | 0.662557 | 5_1:+51113561 | None:intergenic |
| TGCGCTTAAACTTTCATACG+AGG | 0.664827 | 5_1:-51113146 | Msa0735650:CDS |
| CATTCACCTACGACGGCGAG+AGG | 0.670090 | 5_1:-51113690 | Msa0735650:CDS |
| TCAATTAAAGATAAGAAGTG+GGG | 0.672615 | 5_1:-51113056 | Msa0735650:CDS |
| AACTTTGGTGAGAGAGAACG+AGG | 0.672959 | 5_1:-51112984 | Msa0735650:CDS |
| CACGTAGGTAAATAGCGCAA+CGG | 0.677467 | 5_1:+51113797 | None:intergenic |
| TGACACGGACGAAAAGAATG+TGG | 0.683709 | 5_1:+51112853 | None:intergenic |
| TAAGATAAATATCCACAGCA+CGG | 0.685103 | 5_1:+51113422 | None:intergenic |
| GTTCTGTCATTCACCTACGA+CGG | 0.685821 | 5_1:-51113697 | Msa0735650:CDS |
| CTTGTACGTGATCAAACCGG+TGG | 0.702310 | 5_1:-51113973 | Msa0735650:CDS |
| GCTACCGGCGTTGAATACCG+TGG | 0.719357 | 5_1:+51113606 | None:intergenic |
| CGCAACGGAGAAGACAACAG+AGG | 0.726480 | 5_1:+51113812 | None:intergenic |
| TTGCAAAAGAACGGTCACGG+CGG | 0.740959 | 5_1:-51112917 | Msa0735650:CDS |
| TGCACGAGCTAGAGGCACGT+AGG | 0.757887 | 5_1:+51113782 | None:intergenic |
| CGAAAAGGAGAAAAGCACCA+CGG | 0.762999 | 5_1:-51113623 | Msa0735650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATATAAGTTAAAGC+TGG | + | chr5_1:51113140-51113159 | None:intergenic | 15.0% |
| !! | AAACAAAATAATCTATGAAA+TGG | + | chr5_1:51113687-51113706 | None:intergenic | 15.0% |
| !!! | TTTTATATATAAGTTAAAGC+TGG | + | chr5_1:51113140-51113159 | None:intergenic | 15.0% |
| !! | AAACAAAATAATCTATGAAA+TGG | + | chr5_1:51113687-51113706 | None:intergenic | 15.0% |
| !! | ATCAATTAAAGATAAGAAGT+GGG | - | chr5_1:51113354-51113373 | Msa0735650:intron | 20.0% |
| !!! | ACTATAAAATGCAATTTGTT+TGG | - | chr5_1:51113803-51113822 | Msa0735650:CDS | 20.0% |
| !!! | CTATAAAATGCAATTTGTTT+GGG | - | chr5_1:51113804-51113823 | Msa0735650:CDS | 20.0% |
| !!! | TATAAAATGCAATTTGTTTG+GGG | - | chr5_1:51113805-51113824 | Msa0735650:CDS | 20.0% |
| !! | ATCAATTAAAGATAAGAAGT+GGG | - | chr5_1:51113354-51113373 | Msa0735650:intron | 20.0% |
| !!! | ACTATAAAATGCAATTTGTT+TGG | - | chr5_1:51113803-51113822 | Msa0735650:CDS | 20.0% |
| !!! | CTATAAAATGCAATTTGTTT+GGG | - | chr5_1:51113804-51113823 | Msa0735650:CDS | 20.0% |
| !!! | TATAAAATGCAATTTGTTTG+GGG | - | chr5_1:51113805-51113824 | Msa0735650:CDS | 20.0% |
| ! | GATCAATTAAAGATAAGAAG+TGG | - | chr5_1:51113353-51113372 | Msa0735650:intron | 25.0% |
| ! | TCAATTAAAGATAAGAAGTG+GGG | - | chr5_1:51113355-51113374 | Msa0735650:intron | 25.0% |
| ! | TAAAGATACTTCTCATATTG+AGG | - | chr5_1:51113619-51113638 | Msa0735650:CDS | 25.0% |
| ! | AACATCATCATAGTTTAGTA+TGG | - | chr5_1:51113832-51113851 | Msa0735650:CDS | 25.0% |
| ! | GATCAATTAAAGATAAGAAG+TGG | - | chr5_1:51113353-51113372 | Msa0735650:intron | 25.0% |
| ! | TCAATTAAAGATAAGAAGTG+GGG | - | chr5_1:51113355-51113374 | Msa0735650:intron | 25.0% |
| ! | TAAAGATACTTCTCATATTG+AGG | - | chr5_1:51113619-51113638 | Msa0735650:CDS | 25.0% |
| ! | AACATCATCATAGTTTAGTA+TGG | - | chr5_1:51113832-51113851 | Msa0735650:CDS | 25.0% |
| !!! | TTCGGATTTTGTTTCTGAAT+CGG | + | chr5_1:51112511-51112530 | None:intergenic | 30.0% |
| TAAGATAAATATCCACAGCA+CGG | + | chr5_1:51112992-51113011 | None:intergenic | 30.0% | |
| TGCTGTGGATATTTATCTTA+AGG | - | chr5_1:51112992-51113011 | Msa0735650:CDS | 30.0% | |
| CTTACCTAATTTCTTTGACA+CGG | + | chr5_1:51113576-51113595 | None:intergenic | 30.0% | |
| !! | TCTTTAGAACCATTCTTGAA+CGG | + | chr5_1:51113605-51113624 | None:intergenic | 30.0% |
| ATCATCATAGTTTAGTATGG+CGG | - | chr5_1:51113835-51113854 | Msa0735650:CDS | 30.0% | |
| GTCTTTGTATCAAAGAAGAA+AGG | - | chr5_1:51113920-51113939 | Msa0735650:CDS | 30.0% | |
| TGTGTACGTATATATACGTT+TGG | - | chr5_1:51113944-51113963 | Msa0735650:CDS | 30.0% | |
| !!! | TTCGGATTTTGTTTCTGAAT+CGG | + | chr5_1:51112511-51112530 | None:intergenic | 30.0% |
| TAAGATAAATATCCACAGCA+CGG | + | chr5_1:51112992-51113011 | None:intergenic | 30.0% | |
| TGCTGTGGATATTTATCTTA+AGG | - | chr5_1:51112992-51113011 | Msa0735650:CDS | 30.0% | |
| CTTACCTAATTTCTTTGACA+CGG | + | chr5_1:51113576-51113595 | None:intergenic | 30.0% | |
| !! | TCTTTAGAACCATTCTTGAA+CGG | + | chr5_1:51113605-51113624 | None:intergenic | 30.0% |
| ATCATCATAGTTTAGTATGG+CGG | - | chr5_1:51113835-51113854 | Msa0735650:CDS | 30.0% | |
| GTCTTTGTATCAAAGAAGAA+AGG | - | chr5_1:51113920-51113939 | Msa0735650:CDS | 30.0% | |
| TGTGTACGTATATATACGTT+TGG | - | chr5_1:51113944-51113963 | Msa0735650:CDS | 30.0% | |
| AATCTGTTGAATCAGATGAC+CGG | + | chr5_1:51112488-51112507 | None:intergenic | 35.0% | |
| TTGTAGAATCTCACGTTGTT+CGG | + | chr5_1:51112529-51112548 | None:intergenic | 35.0% | |
| AATACCGTTGAACTTCGAAA+TGG | + | chr5_1:51112922-51112941 | None:intergenic | 35.0% | |
| ATTGCCATTCTCATTCCAAA+AGG | - | chr5_1:51112939-51112958 | Msa0735650:CDS | 35.0% | |
| CTTCTCTAACTCATCAAGAT+TGG | + | chr5_1:51113222-51113241 | None:intergenic | 35.0% | |
| CAATCTTGATGAGTTAGAGA+AGG | - | chr5_1:51113220-51113239 | Msa0735650:intron | 35.0% | |
| GTTACAAACAGACGTAACTT+TGG | - | chr5_1:51113412-51113431 | Msa0735650:intron | 35.0% | |
| ! | GTTTCCGATTTGCAAAAGAA+CGG | - | chr5_1:51113485-51113504 | Msa0735650:CDS | 35.0% |
| ACTTCTCATATTGAGGATGT+TGG | - | chr5_1:51113626-51113645 | Msa0735650:CDS | 35.0% | |
| ! | AAATGCAATTTGTTTGGGGT+AGG | - | chr5_1:51113809-51113828 | Msa0735650:CDS | 35.0% |
| TCATCATAGTTTAGTATGGC+GGG | - | chr5_1:51113836-51113855 | Msa0735650:CDS | 35.0% | |
| GTACGTATATATACGTTTGG+AGG | - | chr5_1:51113947-51113966 | Msa0735650:CDS | 35.0% | |
| AATCTGTTGAATCAGATGAC+CGG | + | chr5_1:51112488-51112507 | None:intergenic | 35.0% | |
| TTGTAGAATCTCACGTTGTT+CGG | + | chr5_1:51112529-51112548 | None:intergenic | 35.0% | |
| AATACCGTTGAACTTCGAAA+TGG | + | chr5_1:51112922-51112941 | None:intergenic | 35.0% | |
| ATTGCCATTCTCATTCCAAA+AGG | - | chr5_1:51112939-51112958 | Msa0735650:CDS | 35.0% | |
| CTTCTCTAACTCATCAAGAT+TGG | + | chr5_1:51113222-51113241 | None:intergenic | 35.0% | |
| CAATCTTGATGAGTTAGAGA+AGG | - | chr5_1:51113220-51113239 | Msa0735650:intron | 35.0% | |
| GTTACAAACAGACGTAACTT+TGG | - | chr5_1:51113412-51113431 | Msa0735650:intron | 35.0% | |
| ! | GTTTCCGATTTGCAAAAGAA+CGG | - | chr5_1:51113485-51113504 | Msa0735650:CDS | 35.0% |
| ACTTCTCATATTGAGGATGT+TGG | - | chr5_1:51113626-51113645 | Msa0735650:CDS | 35.0% | |
| ! | AAATGCAATTTGTTTGGGGT+AGG | - | chr5_1:51113809-51113828 | Msa0735650:CDS | 35.0% |
| TCATCATAGTTTAGTATGGC+GGG | - | chr5_1:51113836-51113855 | Msa0735650:CDS | 35.0% | |
| GTACGTATATATACGTTTGG+AGG | - | chr5_1:51113947-51113966 | Msa0735650:CDS | 35.0% | |
| ! | AGACAACAGAGGAAGTTGAT+CGG | + | chr5_1:51112591-51112610 | None:intergenic | 40.0% |
| TTCTGGATCTTGACAGCATT+CGG | - | chr5_1:51112745-51112764 | Msa0735650:CDS | 40.0% | |
| CTCACCATTTCGAAGTTCAA+CGG | - | chr5_1:51112915-51112934 | Msa0735650:CDS | 40.0% | |
| CATAACATGTGTGATGTTGC+AGG | - | chr5_1:51113190-51113209 | Msa0735650:CDS | 40.0% | |
| TGCGCTTAAACTTTCATACG+AGG | - | chr5_1:51113265-51113284 | Msa0735650:intron | 40.0% | |
| GTCTCAGAACAAACGATTAC+CGG | - | chr5_1:51113301-51113320 | Msa0735650:intron | 40.0% | |
| ! | AGTTGAGAACGGAGTTGATT+AGG | - | chr5_1:51113450-51113469 | Msa0735650:CDS | 40.0% |
| ! | GTGACCGTTCTTTTGCAAAT+CGG | + | chr5_1:51113492-51113511 | None:intergenic | 40.0% |
| GATTTGCAAAAGAACGGTCA+CGG | - | chr5_1:51113491-51113510 | Msa0735650:CDS | 40.0% | |
| TCGTCCGTGTCAAAGAAATT+AGG | - | chr5_1:51113569-51113588 | Msa0735650:CDS | 40.0% | |
| AAGCTGAATCCGTTCAAGAA+TGG | - | chr5_1:51113593-51113612 | Msa0735650:CDS | 40.0% | |
| TCATATTGAGGATGTTGGTG+TGG | - | chr5_1:51113631-51113650 | Msa0735650:CDS | 40.0% | |
| TGGATTTGACAAAGCCTAGA+AGG | - | chr5_1:51113651-51113670 | Msa0735650:CDS | 40.0% | |
| ! | AGACAACAGAGGAAGTTGAT+CGG | + | chr5_1:51112591-51112610 | None:intergenic | 40.0% |
| TTCTGGATCTTGACAGCATT+CGG | - | chr5_1:51112745-51112764 | Msa0735650:CDS | 40.0% | |
| CTCACCATTTCGAAGTTCAA+CGG | - | chr5_1:51112915-51112934 | Msa0735650:CDS | 40.0% | |
| CATAACATGTGTGATGTTGC+AGG | - | chr5_1:51113190-51113209 | Msa0735650:CDS | 40.0% | |
| TGCGCTTAAACTTTCATACG+AGG | - | chr5_1:51113265-51113284 | Msa0735650:intron | 40.0% | |
| GTCTCAGAACAAACGATTAC+CGG | - | chr5_1:51113301-51113320 | Msa0735650:intron | 40.0% | |
| ! | AGTTGAGAACGGAGTTGATT+AGG | - | chr5_1:51113450-51113469 | Msa0735650:CDS | 40.0% |
| ! | GTGACCGTTCTTTTGCAAAT+CGG | + | chr5_1:51113492-51113511 | None:intergenic | 40.0% |
| GATTTGCAAAAGAACGGTCA+CGG | - | chr5_1:51113491-51113510 | Msa0735650:CDS | 40.0% | |
| TCGTCCGTGTCAAAGAAATT+AGG | - | chr5_1:51113569-51113588 | Msa0735650:CDS | 40.0% | |
| AAGCTGAATCCGTTCAAGAA+TGG | - | chr5_1:51113593-51113612 | Msa0735650:CDS | 40.0% | |
| TCATATTGAGGATGTTGGTG+TGG | - | chr5_1:51113631-51113650 | Msa0735650:CDS | 40.0% | |
| TGGATTTGACAAAGCCTAGA+AGG | - | chr5_1:51113651-51113670 | Msa0735650:CDS | 40.0% | |
| TGTGTATGCAATCAACGCTC+CGG | + | chr5_1:51112400-51112419 | None:intergenic | 45.0% | |
| TTTGATCACGTACAAGCTCC+CGG | + | chr5_1:51112434-51112453 | None:intergenic | 45.0% | |
| GAGCTTGTACGTGATCAAAC+CGG | - | chr5_1:51112435-51112454 | Msa0735650:three_prime_UTR | 45.0% | |
| CACGTAGGTAAATAGCGCAA+CGG | + | chr5_1:51112617-51112636 | None:intergenic | 45.0% | |
| GTTCTGTCATTCACCTACGA+CGG | - | chr5_1:51112714-51112733 | Msa0735650:three_prime_UTR | 45.0% | |
| CATCTCTGCATTCGTCGAAA+AGG | - | chr5_1:51112773-51112792 | Msa0735650:CDS | 45.0% | |
| !! | CGAAAAGGAGAAAAGCACCA+CGG | - | chr5_1:51112788-51112807 | Msa0735650:CDS | 45.0% |
| ! | ATTTTCTCCGAACGTGCTAC+CGG | + | chr5_1:51112823-51112842 | None:intergenic | 45.0% |
| !! | TAGGTATGCGTCGACAGTTT+TGG | + | chr5_1:51112871-51112890 | None:intergenic | 45.0% |
| TTCTCCGTAGGAAGCAATCT+CGG | + | chr5_1:51112895-51112914 | None:intergenic | 45.0% | |
| AACTTTGGTGAGAGAGAACG+AGG | - | chr5_1:51113427-51113446 | Msa0735650:CDS | 45.0% | |
| AGAGAACGAGGAGTTGAGAA+CGG | - | chr5_1:51113439-51113458 | Msa0735650:CDS | 45.0% | |
| ! | ACAACTTCATCGTCTGGAGT+TGG | - | chr5_1:51113518-51113537 | Msa0735650:CDS | 45.0% |
| ! | TTCATCGTCTGGAGTTGGAA+AGG | - | chr5_1:51113523-51113542 | Msa0735650:CDS | 45.0% |
| TGACACGGACGAAAAGAATG+TGG | + | chr5_1:51113561-51113580 | None:intergenic | 45.0% | |
| TGACAAAGCCTAGAAGGAGA+AGG | - | chr5_1:51113657-51113676 | Msa0735650:CDS | 45.0% | |
| ATGGAGAACCTTCTCCTTCT+AGG | + | chr5_1:51113668-51113687 | None:intergenic | 45.0% | |
| !! | GTATGGCGGGTTTGTTGATT+AGG | - | chr5_1:51113849-51113868 | Msa0735650:CDS | 45.0% |
| TGTGTATGCAATCAACGCTC+CGG | + | chr5_1:51112400-51112419 | None:intergenic | 45.0% | |
| TTTGATCACGTACAAGCTCC+CGG | + | chr5_1:51112434-51112453 | None:intergenic | 45.0% | |
| GAGCTTGTACGTGATCAAAC+CGG | - | chr5_1:51112435-51112454 | Msa0735650:three_prime_UTR | 45.0% | |
| CACGTAGGTAAATAGCGCAA+CGG | + | chr5_1:51112617-51112636 | None:intergenic | 45.0% | |
| GTTCTGTCATTCACCTACGA+CGG | - | chr5_1:51112714-51112733 | Msa0735650:three_prime_UTR | 45.0% | |
| CATCTCTGCATTCGTCGAAA+AGG | - | chr5_1:51112773-51112792 | Msa0735650:CDS | 45.0% | |
| !! | CGAAAAGGAGAAAAGCACCA+CGG | - | chr5_1:51112788-51112807 | Msa0735650:CDS | 45.0% |
| ! | ATTTTCTCCGAACGTGCTAC+CGG | + | chr5_1:51112823-51112842 | None:intergenic | 45.0% |
| !! | TAGGTATGCGTCGACAGTTT+TGG | + | chr5_1:51112871-51112890 | None:intergenic | 45.0% |
| TTCTCCGTAGGAAGCAATCT+CGG | + | chr5_1:51112895-51112914 | None:intergenic | 45.0% | |
| AACTTTGGTGAGAGAGAACG+AGG | - | chr5_1:51113427-51113446 | Msa0735650:CDS | 45.0% | |
| AGAGAACGAGGAGTTGAGAA+CGG | - | chr5_1:51113439-51113458 | Msa0735650:CDS | 45.0% | |
| ! | ACAACTTCATCGTCTGGAGT+TGG | - | chr5_1:51113518-51113537 | Msa0735650:CDS | 45.0% |
| ! | TTCATCGTCTGGAGTTGGAA+AGG | - | chr5_1:51113523-51113542 | Msa0735650:CDS | 45.0% |
| TGACACGGACGAAAAGAATG+TGG | + | chr5_1:51113561-51113580 | None:intergenic | 45.0% | |
| TGACAAAGCCTAGAAGGAGA+AGG | - | chr5_1:51113657-51113676 | Msa0735650:CDS | 45.0% | |
| ATGGAGAACCTTCTCCTTCT+AGG | + | chr5_1:51113668-51113687 | None:intergenic | 45.0% | |
| !! | GTATGGCGGGTTTGTTGATT+AGG | - | chr5_1:51113849-51113868 | Msa0735650:CDS | 45.0% |
| GCGAAATACCTAACTCTCGC+CGG | - | chr5_1:51112378-51112397 | Msa0735650:three_prime_UTR | 50.0% | |
| CTTGTACGTGATCAAACCGG+TGG | - | chr5_1:51112438-51112457 | Msa0735650:three_prime_UTR | 50.0% | |
| CATCATCCCTCTCTTTCCGT+CGG | - | chr5_1:51112551-51112570 | Msa0735650:three_prime_UTR | 50.0% | |
| CTTTCTCCGACGGAAAGAGA+GGG | + | chr5_1:51112560-51112579 | None:intergenic | 50.0% | |
| GGAAAAGCAGCTTTCTCCGA+CGG | + | chr5_1:51112570-51112589 | None:intergenic | 50.0% | |
| !!! | AGTTTTGGCTACGCGTTGCA+TGG | + | chr5_1:51112856-51112875 | None:intergenic | 50.0% |
| CTAGCCGAGATTGCTTCCTA+CGG | - | chr5_1:51112888-51112907 | Msa0735650:CDS | 50.0% | |
| CGAAATGGTGAGTTCTCCGT+AGG | + | chr5_1:51112907-51112926 | None:intergenic | 50.0% | |
| !!! | CGCGCCTTTTGGAATGAGAA+TGG | + | chr5_1:51112946-51112965 | None:intergenic | 50.0% |
| ! | TCAAGTTTACGCGCGCCTTT+TGG | + | chr5_1:51112957-51112976 | None:intergenic | 50.0% |
| CGATGATCTTTACCGTGCTG+TGG | - | chr5_1:51112977-51112996 | Msa0735650:CDS | 50.0% | |
| ! | GGAGAAAGTGTGCAGTGTGA+TGG | - | chr5_1:51113241-51113260 | Msa0735650:intron | 50.0% |
| TTGCAAAAGAACGGTCACGG+CGG | - | chr5_1:51113494-51113513 | Msa0735650:CDS | 50.0% | |
| GCGAAATACCTAACTCTCGC+CGG | - | chr5_1:51112378-51112397 | Msa0735650:three_prime_UTR | 50.0% | |
| CTTGTACGTGATCAAACCGG+TGG | - | chr5_1:51112438-51112457 | Msa0735650:three_prime_UTR | 50.0% | |
| CATCATCCCTCTCTTTCCGT+CGG | - | chr5_1:51112551-51112570 | Msa0735650:three_prime_UTR | 50.0% | |
| CTTTCTCCGACGGAAAGAGA+GGG | + | chr5_1:51112560-51112579 | None:intergenic | 50.0% | |
| GGAAAAGCAGCTTTCTCCGA+CGG | + | chr5_1:51112570-51112589 | None:intergenic | 50.0% | |
| !!! | AGTTTTGGCTACGCGTTGCA+TGG | + | chr5_1:51112856-51112875 | None:intergenic | 50.0% |
| CTAGCCGAGATTGCTTCCTA+CGG | - | chr5_1:51112888-51112907 | Msa0735650:CDS | 50.0% | |
| CGAAATGGTGAGTTCTCCGT+AGG | + | chr5_1:51112907-51112926 | None:intergenic | 50.0% | |
| !!! | CGCGCCTTTTGGAATGAGAA+TGG | + | chr5_1:51112946-51112965 | None:intergenic | 50.0% |
| ! | TCAAGTTTACGCGCGCCTTT+TGG | + | chr5_1:51112957-51112976 | None:intergenic | 50.0% |
| CGATGATCTTTACCGTGCTG+TGG | - | chr5_1:51112977-51112996 | Msa0735650:CDS | 50.0% | |
| ! | GGAGAAAGTGTGCAGTGTGA+TGG | - | chr5_1:51113241-51113260 | Msa0735650:intron | 50.0% |
| TTGCAAAAGAACGGTCACGG+CGG | - | chr5_1:51113494-51113513 | Msa0735650:CDS | 50.0% | |
| ! | CGCGCCACGTTGTTTCATTG+CGG | + | chr5_1:51112361-51112380 | None:intergenic | 55.0% |
| CATACACAGAACGCACGCTC+CGG | - | chr5_1:51112412-51112431 | Msa0735650:three_prime_UTR | 55.0% | |
| ATACACAGAACGCACGCTCC+GGG | - | chr5_1:51112413-51112432 | Msa0735650:three_prime_UTR | 55.0% | |
| GTACGTGATCAAACCGGTGG+CGG | - | chr5_1:51112441-51112460 | Msa0735650:three_prime_UTR | 55.0% | |
| GTGGCGGTGGAGGAAAATTC+CGG | - | chr5_1:51112466-51112485 | Msa0735650:three_prime_UTR | 55.0% | |
| CGACGGAAAGAGAGGGATGA+TGG | + | chr5_1:51112553-51112572 | None:intergenic | 55.0% | |
| GCTTTCTCCGACGGAAAGAG+AGG | + | chr5_1:51112561-51112580 | None:intergenic | 55.0% | |
| CGCAACGGAGAAGACAACAG+AGG | + | chr5_1:51112602-51112621 | None:intergenic | 55.0% | |
| TTCACGCTTGCACGAGCTAG+AGG | + | chr5_1:51112640-51112659 | None:intergenic | 55.0% | |
| AGCACCACGGTATTCAACGC+CGG | - | chr5_1:51112801-51112820 | Msa0735650:CDS | 55.0% | |
| TTCAACGCCGGTAGCACGTT+CGG | - | chr5_1:51112813-51112832 | Msa0735650:CDS | 55.0% | |
| TTTGGCTACGCGTTGCATGG+CGG | + | chr5_1:51112853-51112872 | None:intergenic | 55.0% | |
| CGTAGGAAGCAATCTCGGCT+AGG | + | chr5_1:51112890-51112909 | None:intergenic | 55.0% | |
| GCATGTAGCACGATCTGCAC+CGG | + | chr5_1:51113323-51113342 | None:intergenic | 55.0% | |
| GATAAGAAGTGGGGCAACCG+TGG | - | chr5_1:51113364-51113383 | Msa0735650:intron | 55.0% | |
| GGCGGAACAACTTCATCGTC+TGG | - | chr5_1:51113512-51113531 | Msa0735650:CDS | 55.0% | |
| ! | CGCGCCACGTTGTTTCATTG+CGG | + | chr5_1:51112361-51112380 | None:intergenic | 55.0% |
| CATACACAGAACGCACGCTC+CGG | - | chr5_1:51112412-51112431 | Msa0735650:three_prime_UTR | 55.0% | |
| ATACACAGAACGCACGCTCC+GGG | - | chr5_1:51112413-51112432 | Msa0735650:three_prime_UTR | 55.0% | |
| GTACGTGATCAAACCGGTGG+CGG | - | chr5_1:51112441-51112460 | Msa0735650:three_prime_UTR | 55.0% | |
| GTGGCGGTGGAGGAAAATTC+CGG | - | chr5_1:51112466-51112485 | Msa0735650:three_prime_UTR | 55.0% | |
| CGACGGAAAGAGAGGGATGA+TGG | + | chr5_1:51112553-51112572 | None:intergenic | 55.0% | |
| GCTTTCTCCGACGGAAAGAG+AGG | + | chr5_1:51112561-51112580 | None:intergenic | 55.0% | |
| CGCAACGGAGAAGACAACAG+AGG | + | chr5_1:51112602-51112621 | None:intergenic | 55.0% | |
| TTCACGCTTGCACGAGCTAG+AGG | + | chr5_1:51112640-51112659 | None:intergenic | 55.0% | |
| AGCACCACGGTATTCAACGC+CGG | - | chr5_1:51112801-51112820 | Msa0735650:CDS | 55.0% | |
| TTCAACGCCGGTAGCACGTT+CGG | - | chr5_1:51112813-51112832 | Msa0735650:CDS | 55.0% | |
| TTTGGCTACGCGTTGCATGG+CGG | + | chr5_1:51112853-51112872 | None:intergenic | 55.0% | |
| CGTAGGAAGCAATCTCGGCT+AGG | + | chr5_1:51112890-51112909 | None:intergenic | 55.0% | |
| GCATGTAGCACGATCTGCAC+CGG | + | chr5_1:51113323-51113342 | None:intergenic | 55.0% | |
| GATAAGAAGTGGGGCAACCG+TGG | - | chr5_1:51113364-51113383 | Msa0735650:intron | 55.0% | |
| GGCGGAACAACTTCATCGTC+TGG | - | chr5_1:51113512-51113531 | Msa0735650:CDS | 55.0% | |
| TCAACGCTCCGGCGAGAGTT+AGG | + | chr5_1:51112389-51112408 | None:intergenic | 60.0% | |
| !! | GATCAAACCGGTGGCGGAAG+TGG | - | chr5_1:51112447-51112466 | Msa0735650:three_prime_UTR | 60.0% |
| ! | TGCACGAGCTAGAGGCACGT+AGG | + | chr5_1:51112632-51112651 | None:intergenic | 60.0% |
| CATTCACCTACGACGGCGAG+AGG | - | chr5_1:51112721-51112740 | Msa0735650:exon | 60.0% | |
| ! | GCTACCGGCGTTGAATACCG+TGG | + | chr5_1:51112808-51112827 | None:intergenic | 60.0% |
| CTCTTCCGCGTCACGTTCCA+CGG | + | chr5_1:51113384-51113403 | None:intergenic | 60.0% | |
| TGGAACGTGACGCGGAAGAG+AGG | - | chr5_1:51113384-51113403 | Msa0735650:intron | 60.0% | |
| TCAACGCTCCGGCGAGAGTT+AGG | + | chr5_1:51112389-51112408 | None:intergenic | 60.0% | |
| !! | GATCAAACCGGTGGCGGAAG+TGG | - | chr5_1:51112447-51112466 | Msa0735650:three_prime_UTR | 60.0% |
| ! | TGCACGAGCTAGAGGCACGT+AGG | + | chr5_1:51112632-51112651 | None:intergenic | 60.0% |
| CATTCACCTACGACGGCGAG+AGG | - | chr5_1:51112721-51112740 | Msa0735650:exon | 60.0% | |
| ! | GCTACCGGCGTTGAATACCG+TGG | + | chr5_1:51112808-51112827 | None:intergenic | 60.0% |
| CTCTTCCGCGTCACGTTCCA+CGG | + | chr5_1:51113384-51113403 | None:intergenic | 60.0% | |
| TGGAACGTGACGCGGAAGAG+AGG | - | chr5_1:51113384-51113403 | Msa0735650:intron | 60.0% | |
| !! | CAAACCGGTGGCGGAAGTGG+CGG | - | chr5_1:51112450-51112469 | Msa0735650:three_prime_UTR | 65.0% |
| CAGAAGCCTCTCGCCGTCGT+AGG | + | chr5_1:51112730-51112749 | None:intergenic | 65.0% | |
| CTACGACGGCGAGAGGCTTC+TGG | - | chr5_1:51112728-51112747 | Msa0735650:exon | 65.0% | |
| GGCAACCGTGGAACGTGACG+CGG | - | chr5_1:51113376-51113395 | Msa0735650:intron | 65.0% | |
| !! | CAAACCGGTGGCGGAAGTGG+CGG | - | chr5_1:51112450-51112469 | Msa0735650:three_prime_UTR | 65.0% |
| CAGAAGCCTCTCGCCGTCGT+AGG | + | chr5_1:51112730-51112749 | None:intergenic | 65.0% | |
| CTACGACGGCGAGAGGCTTC+TGG | - | chr5_1:51112728-51112747 | Msa0735650:exon | 65.0% | |
| GGCAACCGTGGAACGTGACG+CGG | - | chr5_1:51113376-51113395 | Msa0735650:intron | 65.0% | |
| TCCACCGCCACTTCCGCCAC+CGG | + | chr5_1:51112457-51112476 | None:intergenic | 70.0% | |
| TCCACCGCCACTTCCGCCAC+CGG | + | chr5_1:51112457-51112476 | None:intergenic | 70.0% | |
| !! | ACCGGTGGCGGAAGTGGCGG+TGG | - | chr5_1:51112453-51112472 | Msa0735650:three_prime_UTR | 75.0% |
| !! | GGTGGCGGAAGTGGCGGTGG+AGG | - | chr5_1:51112456-51112475 | Msa0735650:three_prime_UTR | 75.0% |
| !! | ACCGGTGGCGGAAGTGGCGG+TGG | - | chr5_1:51112453-51112472 | Msa0735650:three_prime_UTR | 75.0% |
| !! | GGTGGCGGAAGTGGCGGTGG+AGG | - | chr5_1:51112456-51112475 | Msa0735650:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 51112357 | 51114076 | 51112357 | ID=Msa0735650;Name=Msa0735650 |
| chr5_1 | mRNA | 51112357 | 51114076 | 51112357 | ID=Msa0735650-mRNA-1;Parent=Msa0735650;Name=Msa0735650-mRNA-1;_AED=0.00;_eAED=0.00;_QI=6|1|1|1|1|1|2|382|377 |
| chr5_1 | exon | 51112357 | 51113221 | 51112357 | ID=Msa0735650-mRNA-1:exon:14417;Parent=Msa0735650-mRNA-1 |
| chr5_1 | exon | 51113420 | 51114076 | 51113420 | ID=Msa0735650-mRNA-1:exon:14416;Parent=Msa0735650-mRNA-1 |
| chr5_1 | five_prime_UTR | 51114071 | 51114076 | 51114071 | ID=Msa0735650-mRNA-1:five_prime_utr;Parent=Msa0735650-mRNA-1 |
| chr5_1 | CDS | 51113420 | 51114070 | 51113420 | ID=Msa0735650-mRNA-1:cds;Parent=Msa0735650-mRNA-1 |
| chr5_1 | CDS | 51112739 | 51113221 | 51112739 | ID=Msa0735650-mRNA-1:cds;Parent=Msa0735650-mRNA-1 |
| chr5_1 | three_prime_UTR | 51112357 | 51112738 | 51112357 | ID=Msa0735650-mRNA-1:three_prime_utr;Parent=Msa0735650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
