AlfalfaGEDB | Msa0744670

M. sativa cultivar zhongmu-4 / Msa0744670

KEGG: K21752
GO: -
PFAM: PF00808.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0744670	XP_013454332.1	89.003	291	26	3	1	286	1	290	9.98e-160	457

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0744670	sp\|Q14919\|NC2A_HUMAN	41.463	164	70	3	2	165	5	142	5.96e-32	120

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0744670	A0A072UGZ0	89.003	291	26	3	1	286	1	290	4.77e-160	457

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TFs/TRs:

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Gene ID	Type	Classification
Msa0744670	TF	NF-YC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0744670	Msa0744700	0.870758	1.145194e-66	-8.615850e-47
Msa0744670	Msa0821010	0.812713	3.691127e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0744670	MtrunA17_Chr5g0441241	88.321	274	26	3	18	286	1	273	1.65e-150	423
Msa0744670	MtrunA17_Chr3g0081161	48.993	298	123	9	1	287	1	280	3.62e-77	237
Msa0744670	MtrunA17_Chr8g0354151	44.337	309	135	6	1	287	1	294	4.13e-74	229

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0744670	AT5G19490.1	44.333	300	123	8	1	297	1	259	3.53e-59	190
Msa0744670	AT3G12480.1	69.925	133	34	1	1	127	1	133	5.38e-59	191

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Find 79 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATGCGCATACCAGTGGA+AGG	0.579451	5_1:-65550497	Msa0744670:CDS
AACTAGCCAACTTAAGTAAA+AGG	0.295471	5_1:-65550041	Msa0744670:CDS
AATTTCAGAAGAGAAGATTG+AGG	0.553548	5_1:-65550118	Msa0744670:CDS
ACAAATCCTTATTGGTTAGG+AGG	0.487491	5_1:-65549870	Msa0744670:three_prime_UTR
ACACCAACTCCTATCCCATC+CGG	0.568917	5_1:-65550180	Msa0744670:CDS
ACATGCGCATACCAGTGGAA+GGG	0.649450	5_1:-65550496	Msa0744670:CDS
ACCAAGCTGTCACTAAGAGG+AGG	0.677608	5_1:-65551164	Msa0744670:intron
ACCAGTGGAAGGGGCGGTAG+GGG	0.488619	5_1:-65550486	Msa0744670:CDS
ACCCCTACCGCCCCTTCCAC+TGG	0.506809	5_1:+65550485	None:intergenic
ACCTCCTCTTAGTGACAGCT+TGG	0.548550	5_1:+65551163	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GACAAGAAAAAAAACCGAAA+GGG	+	chr5_1:65549987-65550006	None:intergenic	30.0%
TACTTGCTTAATATTGATGC+CGG	-	chr5_1:65550195-65550214	Msa0744670:CDS	30.0%
GAGATAAAATAACTCTGTTG+TGG	-	chr5_1:65550217-65550236	Msa0744670:CDS	30.0%
GATAAAATAACTCTGTTGTG+GGG	-	chr5_1:65550219-65550238	Msa0744670:CDS	30.0%
ATAAAATAACTCTGTTGTGG+GGG	-	chr5_1:65550220-65550239	Msa0744670:CDS	30.0%
AACATTAGGGTACATAGTAA+GGG	+	chr5_1:65550424-65550443	None:intergenic	30.0%
TAACATTAGGGTACATAGTA+AGG	+	chr5_1:65550425-65550444	None:intergenic	30.0%
AACTGTACTACACAATTTGT+CGG	+	chr5_1:65550591-65550610	None:intergenic	30.0%
CAAATTGTGTAGTACAGTTA+CGG	-	chr5_1:65550592-65550611	Msa0744670:intron	30.0%
GGTAAAGAAGATTTCATGAT+TGG	+	chr5_1:65550641-65550660	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	65549778	65554027	65549778	ID=Msa0744670;Name=Msa0744670
chr5_1	mRNA	65549778	65554027	65549778	ID=Msa0744670-mRNA-1;Parent=Msa0744670;Name=Msa0744670-mRNA-1;_AED=0.05;_eAED=0.05;_QI=149\|1\|1\|1\|1\|1\|6\|224\|298
chr5_1	exon	65549778	65550523	65549778	ID=Msa0744670-mRNA-1:exon:19513;Parent=Msa0744670-mRNA-1
chr5_1	exon	65551026	65551083	65551026	ID=Msa0744670-mRNA-1:exon:19512;Parent=Msa0744670-mRNA-1
chr5_1	exon	65551165	65551281	65551165	ID=Msa0744670-mRNA-1:exon:19511;Parent=Msa0744670-mRNA-1
chr5_1	exon	65552221	65552314	65552221	ID=Msa0744670-mRNA-1:exon:19510;Parent=Msa0744670-mRNA-1
chr5_1	exon	65552441	65552513	65552441	ID=Msa0744670-mRNA-1:exon:19509;Parent=Msa0744670-mRNA-1
chr5_1	exon	65553846	65554027	65553846	ID=Msa0744670-mRNA-1:exon:19508;Parent=Msa0744670-mRNA-1
chr5_1	five_prime_UTR	65553879	65554027	65553879	ID=Msa0744670-mRNA-1:five_prime_utr;Parent=Msa0744670-mRNA-1
chr5_1	CDS	65553846	65553878	65553846	ID=Msa0744670-mRNA-1:cds;Parent=Msa0744670-mRNA-1
chr5_1	CDS	65552441	65552513	65552441	ID=Msa0744670-mRNA-1:cds;Parent=Msa0744670-mRNA-1
chr5_1	CDS	65552221	65552314	65552221	ID=Msa0744670-mRNA-1:cds;Parent=Msa0744670-mRNA-1
chr5_1	CDS	65551165	65551281	65551165	ID=Msa0744670-mRNA-1:cds;Parent=Msa0744670-mRNA-1
chr5_1	CDS	65551026	65551083	65551026	ID=Msa0744670-mRNA-1:cds;Parent=Msa0744670-mRNA-1
chr5_1	CDS	65550002	65550523	65550002	ID=Msa0744670-mRNA-1:cds;Parent=Msa0744670-mRNA-1
chr5_1	three_prime_UTR	65549778	65550001	65549778	ID=Msa0744670-mRNA-1:three_prime_utr;Parent=Msa0744670-mRNA-1

Gene Sequence

>Msa0744670

ATGAGGAAGAAACTAGATACTCGTTTCCCTGCTGCTAGGATTAAGAAAATTATGCAAGCTGATGAAGATATAGGGAAGATTGCATTGGCCGTGCCTCTTCTAGTTTCAAAAGCACTAGAGCTATTTCTGCAAGATTTGTGTGATAGAACATACGAGATAACACTTAGGAGGGGAGCAAAGACCGTGAATGCTTTTCATTTAAAACAGTGCATACAAACTTGTAATGTCTTTGATTTTCTGAAAGATACTGTGAGCAAAGTTCCTGATTTAGGCGGTTCTGCTGCAACTGGTGACGACCAAGCTGTCACTAAGAGGAGGAAAGTTTCTGAAGATGACGATGATGACAGCGATGAGGAGACCAAGAGAAGTAAAATGCGAGAACATGCGCATACCAGTGGAAGGGGCGGTAGGGGTAGAGGCAGGGGACGTGGCTGCGGCCAAGGAAGTAAAACTGTAGATCAAGAGATCAATTCACATGTCAAGTTTGAAGAAGATTGTGAAGCATTGAAGCAAAACGGCAACCACACTCAAAATAATGTAAGCCCAGAAATCGAGGAAGTTAAGCTGAGTTCACCAGTCAAAGAACCTGAGGAAGTTAAGCATTGTTCACCGGTAAGAAAACCAGCTGAAGTGGTAGTTCGAAATTTCGATTTAAATCTGAATCCGGATCCGGATGACGACATGGATGAAATATCCACACCAACTCCTATCCCATCCGGTTCATCTTCAAAATCAGTTTCAGAAGAGAAGATAAAATCAATTTCAGAAGAGAAGATTGAGGAATACCCTGGATGGTCCTTTTCTGATATGGAAAAAATGGCTATTGATCCCTCACAACTAGCCAACTTAAGTAAAAGGATTGATGAAGATATGGAAGATTATGATGAAGAAGTGTAG

Protein sequence

>Msa0744670

MRKKLDTRFPAARIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEITLRRGAKTVNAFHLKQCIQTCNVFDFLKDTVSKVPDLGGSAATGDDQAVTKRRKVSEDDDDDSDEETKRSKMREHAHTSGRGGRGRGRGRGCGQGSKTVDQEINSHVKFEEDCEALKQNGNHTQNNVSPEIEEVKLSSPVKEPEEVKHCSPVRKPAEVVVRNFDLNLNPDPDDDMDEISTPTPIPSGSSSKSVSEEKIKSISEEKIEEYPGWSFSDMEKMAIDPSQLANLSKRIDEDMEDYDEEV*