Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744670 | XP_013454332.1 | 89.003 | 291 | 26 | 3 | 1 | 286 | 1 | 290 | 9.98e-160 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744670 | sp|Q14919|NC2A_HUMAN | 41.463 | 164 | 70 | 3 | 2 | 165 | 5 | 142 | 5.96e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744670 | A0A072UGZ0 | 89.003 | 291 | 26 | 3 | 1 | 286 | 1 | 290 | 4.77e-160 | 457 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0744670 | TF | NF-YC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0744670 | Msa0744700 | 0.870758 | 1.145194e-66 | -8.615850e-47 |
| Msa0744670 | Msa0821010 | 0.812713 | 3.691127e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744670 | MtrunA17_Chr5g0441241 | 88.321 | 274 | 26 | 3 | 18 | 286 | 1 | 273 | 1.65e-150 | 423 |
| Msa0744670 | MtrunA17_Chr3g0081161 | 48.993 | 298 | 123 | 9 | 1 | 287 | 1 | 280 | 3.62e-77 | 237 |
| Msa0744670 | MtrunA17_Chr8g0354151 | 44.337 | 309 | 135 | 6 | 1 | 287 | 1 | 294 | 4.13e-74 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744670 | AT5G19490.1 | 44.333 | 300 | 123 | 8 | 1 | 297 | 1 | 259 | 3.53e-59 | 190 |
| Msa0744670 | AT3G12480.1 | 69.925 | 133 | 34 | 1 | 1 | 127 | 1 | 133 | 5.38e-59 | 191 |
Find 79 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTAACTTCCTCGATTTC+TGG | 0.151578 | 5_1:+65550333 | None:intergenic |
| CTTCTTGTTGTTTAGGAGTT+TGG | 0.239094 | 5_1:+65554005 | None:intergenic |
| GGTTTAACTTCTTGTTGTTT+AGG | 0.280960 | 5_1:+65553998 | None:intergenic |
| AACTAGCCAACTTAAGTAAA+AGG | 0.295471 | 5_1:-65550041 | Msa0744670:CDS |
| GTGAGCAAAGTTCCTGATTT+AGG | 0.300821 | 5_1:-65551210 | Msa0744670:CDS |
| TAGTCAGTACCTTCATTTAG+AGG | 0.303078 | 5_1:-65549835 | Msa0744670:three_prime_UTR |
| GGAAGGGGCGGTAGGGGTAG+AGG | 0.322327 | 5_1:-65550480 | Msa0744670:CDS |
| AGTGTTAGACAAATCCTTAT+TGG | 0.327540 | 5_1:-65549878 | Msa0744670:three_prime_UTR |
| ATGCAAGCTGATGAAGATAT+AGG | 0.348420 | 5_1:-65552473 | Msa0744670:CDS |
| TTATGACTTCTCACATATAT+AGG | 0.351806 | 5_1:-65549959 | Msa0744670:three_prime_UTR |
| AGGGGTAGAGGCAGGGGACG+TGG | 0.363783 | 5_1:-65550468 | Msa0744670:CDS |
| GCTTAACTTCCTCGATTTCT+GGG | 0.371274 | 5_1:+65550334 | None:intergenic |
| GGAGACCAAGAGAAGTAAAA+TGG | 0.382690 | 5_1:-65551025 | Msa0744670:intron |
| TAGACAAATCCTTATTGGTT+AGG | 0.392591 | 5_1:-65549873 | Msa0744670:three_prime_UTR |
| TCAATGCCTCCTAACCAATA+AGG | 0.394814 | 5_1:+65549864 | None:intergenic |
| TAAAAGGATTGATGAAGATA+TGG | 0.395167 | 5_1:-65550025 | Msa0744670:CDS |
| TTTCGATTTAAATCTGAATC+CGG | 0.397431 | 5_1:-65550232 | Msa0744670:CDS |
| GGGGCGGTAGGGGTAGAGGC+AGG | 0.398203 | 5_1:-65550476 | Msa0744670:CDS |
| GGCGGTAGGGGTAGAGGCAG+GGG | 0.408013 | 5_1:-65550474 | Msa0744670:CDS |
| TGCAAGCTGATGAAGATATA+GGG | 0.408049 | 5_1:-65552472 | Msa0744670:CDS |
| AGAGGCAGGGGACGTGGCTG+CGG | 0.413574 | 5_1:-65550462 | Msa0744670:CDS |
| AGGGGACGTGGCTGCGGCCA+AGG | 0.416986 | 5_1:-65550456 | Msa0744670:CDS |
| GCAGCAGAACCGCCTAAATC+AGG | 0.433277 | 5_1:+65551198 | None:intergenic |
| GAACAATGCTTAACTTCCTC+AGG | 0.444484 | 5_1:+65550291 | None:intergenic |
| TCCATGTCGTCATCCGGATC+CGG | 0.447116 | 5_1:+65550213 | None:intergenic |
| ACTTCCTCAGGTTCTTTGAC+TGG | 0.454445 | 5_1:+65550303 | None:intergenic |
| TTTCGAACTACCACTTCAGC+TGG | 0.460443 | 5_1:+65550255 | None:intergenic |
| TTAGGCGGTTCTGCTGCAAC+TGG | 0.479475 | 5_1:-65551192 | Msa0744670:CDS |
| ATTTCATCCATGTCGTCATC+CGG | 0.486479 | 5_1:+65550207 | None:intergenic |
| ACAAATCCTTATTGGTTAGG+AGG | 0.487491 | 5_1:-65549870 | Msa0744670:three_prime_UTR |
| ACCAGTGGAAGGGGCGGTAG+GGG | 0.488619 | 5_1:-65550486 | Msa0744670:CDS |
| CTTAAGTTGGCTAGTTGTGA+GGG | 0.489184 | 5_1:+65550048 | None:intergenic |
| TTACAAATGAAAAGCATTCA+CGG | 0.491312 | 5_1:+65552217 | None:intergenic |
| ATACCAGTGGAAGGGGCGGT+AGG | 0.493238 | 5_1:-65550488 | Msa0744670:CDS |
| TACCAGTGGAAGGGGCGGTA+GGG | 0.494206 | 5_1:-65550487 | Msa0744670:CDS |
| GAAGATGAACCGGATGGGAT+AGG | 0.503037 | 5_1:+65550171 | None:intergenic |
| ACCCCTACCGCCCCTTCCAC+TGG | 0.506809 | 5_1:+65550485 | None:intergenic |
| TTTAAATCTGAATCCGGATC+CGG | 0.510680 | 5_1:-65550226 | Msa0744670:CDS |
| GGGCGGTAGGGGTAGAGGCA+GGG | 0.517634 | 5_1:-65550475 | Msa0744670:CDS |
| CATGCGCATACCAGTGGAAG+GGG | 0.522977 | 5_1:-65550495 | Msa0744670:CDS |
| TCCGGATCCGGATGACGACA+TGG | 0.537250 | 5_1:-65550214 | Msa0744670:CDS |
| GACTACTTACAAACTAGAAG+AGG | 0.544073 | 5_1:+65552431 | None:intergenic |
| TGTGAAGCATTGAAGCAAAA+CGG | 0.548283 | 5_1:-65550381 | Msa0744670:CDS |
| ACCTCCTCTTAGTGACAGCT+TGG | 0.548550 | 5_1:+65551163 | None:intergenic |
| ACTTAAGTTGGCTAGTTGTG+AGG | 0.550618 | 5_1:+65550047 | None:intergenic |
| AATTTCAGAAGAGAAGATTG+AGG | 0.553548 | 5_1:-65550118 | Msa0744670:CDS |
| CATACGAGATAACACTTAGG+AGG | 0.553719 | 5_1:-65552250 | Msa0744670:CDS |
| TAATCATTAGAAAGTTCTGA+TGG | 0.554324 | 5_1:-65549935 | Msa0744670:three_prime_UTR |
| GAACCGGATGGGATAGGAGT+TGG | 0.555156 | 5_1:+65550177 | None:intergenic |
| GAGAAGATTGAGGAATACCC+TGG | 0.559641 | 5_1:-65550108 | Msa0744670:CDS |
| TCTACTGAGCCTCTAAATGA+AGG | 0.562344 | 5_1:+65549826 | None:intergenic |
| ATATCAGAAAAGGACCATCC+AGG | 0.563775 | 5_1:+65550090 | None:intergenic |
| GGAAGTTAAGCATTGTTCAC+CGG | 0.563902 | 5_1:-65550286 | Msa0744670:CDS |
| ACACCAACTCCTATCCCATC+CGG | 0.568917 | 5_1:-65550180 | Msa0744670:CDS |
| TTCTTCACAACAACAACATG+AGG | 0.578374 | 5_1:-65553873 | Msa0744670:exon |
| AACATGCGCATACCAGTGGA+AGG | 0.579451 | 5_1:-65550497 | Msa0744670:CDS |
| ACGACCAAGCTGTCACTAAG+AGG | 0.580960 | 5_1:-65551167 | Msa0744670:CDS |
| GGTAAGAAAACCAGCTGAAG+TGG | 0.584865 | 5_1:-65550265 | Msa0744670:CDS |
| TATCAGAAAAGGACCATCCA+GGG | 0.585690 | 5_1:+65550091 | None:intergenic |
| TTGAAGAAGACGAAGAGGGA+AGG | 0.589461 | 5_1:+65553949 | None:intergenic |
| ATACGAGATAACACTTAGGA+GGG | 0.600468 | 5_1:-65552249 | Msa0744670:CDS |
| AGATATAGGGAAGATTGCAT+TGG | 0.616410 | 5_1:-65552459 | Msa0744670:CDS |
| TAATGTAAGCCCAGAAATCG+AGG | 0.616586 | 5_1:-65550343 | Msa0744670:CDS |
| TGTTGTTGTGAAGAAGAAGA+TGG | 0.620292 | 5_1:+65553881 | None:intergenic |
| AGCAAAGTTCCTGATTTAGG+CGG | 0.623500 | 5_1:-65551207 | Msa0744670:CDS |
| ACGCGTTGAAGAAGACGAAG+AGG | 0.626457 | 5_1:+65553944 | None:intergenic |
| CGAGAACATGCGCATACCAG+TGG | 0.633781 | 5_1:-65550501 | Msa0744670:CDS |
| GGATGGGATAGGAGTTGGTG+TGG | 0.637023 | 5_1:+65550182 | None:intergenic |
| GCGCATACCAGTGGAAGGGG+CGG | 0.637896 | 5_1:-65550492 | Msa0744670:CDS |
| GAACATACGAGATAACACTT+AGG | 0.637954 | 5_1:-65552253 | Msa0744670:CDS |
| ACATGCGCATACCAGTGGAA+GGG | 0.649450 | 5_1:-65550496 | Msa0744670:CDS |
| CGCGTTGAAGAAGACGAAGA+GGG | 0.650949 | 5_1:+65553945 | None:intergenic |
| AGATTGAGGAATACCCTGGA+TGG | 0.653139 | 5_1:-65550104 | Msa0744670:CDS |
| TTCACCAGTCAAAGAACCTG+AGG | 0.656260 | 5_1:-65550307 | Msa0744670:CDS |
| CTTACAAACTAGAAGAGGCA+CGG | 0.671946 | 5_1:+65552436 | None:intergenic |
| TACGAGATAACACTTAGGAG+GGG | 0.675136 | 5_1:-65552248 | Msa0744670:CDS |
| ACCAAGCTGTCACTAAGAGG+AGG | 0.677608 | 5_1:-65551164 | Msa0744670:intron |
| TGACGATGATGACAGCGATG+AGG | 0.685240 | 5_1:-65551046 | Msa0744670:CDS |
| ATGGTGAAGACAAAACCATG+TGG | 0.751791 | 5_1:+65553900 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTAAAAAAAAATGTTAAA+AGG | + | chr5_1:65550995-65551014 | None:intergenic | 10.0% |
| !!! | AAATTTTTTTTCTTTATAGT+TGG | + | chr5_1:65551675-65551694 | None:intergenic | 10.0% |
| !! | TATCTTTAAATTTAATATGT+TGG | + | chr5_1:65551702-65551721 | None:intergenic | 10.0% |
| !! | ATTTCACAAAAAAAAAAAAT+CGG | - | chr5_1:65551804-65551823 | Msa0744670:intron | 10.0% |
| !! | AAATTTAACAAAATTAAACA+AGG | - | chr5_1:65551828-65551847 | Msa0744670:intron | 10.0% |
| !! | ATTGATATATTTATTTATGT+TGG | + | chr5_1:65552259-65552278 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAATCAGT+TGG | + | chr5_1:65553192-65553211 | None:intergenic | 10.0% |
| !!! | TTTAGATTTTGTAAAGATTT+TGG | + | chr5_1:65549814-65549833 | None:intergenic | 15.0% |
| !!! | TTTTTCTGTTTTTGTTTTAT+TGG | - | chr5_1:65550047-65550066 | Msa0744670:CDS | 15.0% |
| !!! | TTTTCTGTTTTTGTTTTATT+GGG | - | chr5_1:65550048-65550067 | Msa0744670:CDS | 15.0% |
| !! | TAAACCTAATGATAATAATA+AGG | + | chr5_1:65550085-65550104 | None:intergenic | 15.0% |
| !! | TCCTTTATTAAAATTTGATA+TGG | - | chr5_1:65550538-65550557 | Msa0744670:intron | 15.0% |
| !!! | ACCATATCAAATTTTAATAA+AGG | + | chr5_1:65550542-65550561 | None:intergenic | 15.0% |
| !!! | TATATTGTAATTTGTAAACA+GGG | - | chr5_1:65550823-65550842 | Msa0744670:intron | 15.0% |
| !!! | TTACAGATTAAATTTCTTTT+CGG | + | chr5_1:65551929-65551948 | None:intergenic | 15.0% |
| !!! | ATTTTTCAATGTAAACTAAT+AGG | - | chr5_1:65552120-65552139 | Msa0744670:intron | 15.0% |
| !! | ATAGTCATAAACAAATTAAA+TGG | + | chr5_1:65552171-65552190 | None:intergenic | 15.0% |
| !! | AAGAAAAAATATTCTTCAAT+CGG | + | chr5_1:65552392-65552411 | None:intergenic | 15.0% |
| !!! | TTGAAGAATATTTTTTCTTT+TGG | - | chr5_1:65552393-65552412 | Msa0744670:intron | 15.0% |
| !!! | TGAAGAATATTTTTTCTTTT+GGG | - | chr5_1:65552394-65552413 | Msa0744670:intron | 15.0% |
| !!! | TGATTTGTATTTTGTATATT+AGG | - | chr5_1:65552700-65552719 | Msa0744670:intron | 15.0% |
| !!! | AATCACTTAAATCAATTTTT+TGG | + | chr5_1:65553103-65553122 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTAAGTGATTA+TGG | - | chr5_1:65553104-65553123 | Msa0744670:intron | 15.0% |
| !!! | ACAATTAGAAAAGATTTTTT+AGG | - | chr5_1:65553871-65553890 | Msa0744670:exon | 15.0% |
| !!! | ATTTTGTAAAGATTTTGGTT+TGG | + | chr5_1:65549809-65549828 | None:intergenic | 20.0% |
| !! | GAATCCTTATTATTATCATT+AGG | - | chr5_1:65550078-65550097 | Msa0744670:CDS | 20.0% |
| !!! | ATCATTAGGTTTATTTTTGT+TGG | - | chr5_1:65550092-65550111 | Msa0744670:CDS | 20.0% |
| !!! | TCATTAGGTTTATTTTTGTT+GGG | - | chr5_1:65550093-65550112 | Msa0744670:CDS | 20.0% |
| !!! | TATTTTGATTATATGGATGA+TGG | - | chr5_1:65550122-65550141 | Msa0744670:CDS | 20.0% |
| !!! | ATTTTGATTATATGGATGAT+GGG | - | chr5_1:65550123-65550142 | Msa0744670:CDS | 20.0% |
| !! | AAATCTTCTTTACCATAAAT+GGG | - | chr5_1:65550647-65550666 | Msa0744670:intron | 20.0% |
| !!! | CTATATTGTAATTTGTAAAC+AGG | - | chr5_1:65550822-65550841 | Msa0744670:intron | 20.0% |
| !! | GCTTCAAAAAACAAAAAATA+GGG | + | chr5_1:65551389-65551408 | None:intergenic | 20.0% |
| !! | TGCTTCAAAAAACAAAAAAT+AGG | + | chr5_1:65551390-65551409 | None:intergenic | 20.0% |
| !! | ATTTAGTAAACACTCAATTA+TGG | + | chr5_1:65552087-65552106 | None:intergenic | 20.0% |
| !! | TAGCTCAATGTTTATTATTT+GGG | - | chr5_1:65552341-65552360 | Msa0744670:intron | 20.0% |
| !!! | GAAGAATATTTTTTCTTTTG+GGG | - | chr5_1:65552395-65552414 | Msa0744670:intron | 20.0% |
| !! | ATATAGAACAAATATAACCA+GGG | + | chr5_1:65552457-65552476 | None:intergenic | 20.0% |
| !! | TTGTACAAAATGTTGTTAAA+TGG | + | chr5_1:65552957-65552976 | None:intergenic | 20.0% |
| !!! | AAACCATGTGGTTTTTTAAA+GGG | + | chr5_1:65549874-65549893 | None:intergenic | 25.0% |
| !!! | AAAACCATGTGGTTTTTTAA+AGG | + | chr5_1:65549875-65549894 | None:intergenic | 25.0% |
| !!! | CATTAGGTTTATTTTTGTTG+GGG | - | chr5_1:65550094-65550113 | Msa0744670:CDS | 25.0% |
| !!! | GGTTGGTTATTTTGATTATA+TGG | - | chr5_1:65550115-65550134 | Msa0744670:CDS | 25.0% |
| ! | AGATAAAATAACTCTGTTGT+GGG | - | chr5_1:65550218-65550237 | Msa0744670:CDS | 25.0% |
| ! | TCAGCAAAACAATAACATTA+GGG | + | chr5_1:65550437-65550456 | None:intergenic | 25.0% |
| ! | ATCAGCAAAACAATAACATT+AGG | + | chr5_1:65550438-65550457 | None:intergenic | 25.0% |
| !!! | GGTGAAATAAGATTTGTTTT+TGG | - | chr5_1:65550501-65550520 | Msa0744670:CDS | 25.0% |
| ! | GAAATCTTCTTTACCATAAA+TGG | - | chr5_1:65550646-65550665 | Msa0744670:intron | 25.0% |
| ! | ATGATCAATGATATCAATAG+TGG | - | chr5_1:65550879-65550898 | Msa0744670:intron | 25.0% |
| !! | TATTTCACATAGCGTATTTT+TGG | + | chr5_1:65550926-65550945 | None:intergenic | 25.0% |
| ! | AAATGTTAAAAGGACAAAAC+TGG | + | chr5_1:65550985-65551004 | None:intergenic | 25.0% |
| !!! | TCTTTTCACCATTCATTTTT+TGG | - | chr5_1:65551030-65551049 | Msa0744670:CDS | 25.0% |
| ! | AATGAGTGAGAATTCAATAA+TGG | + | chr5_1:65551162-65551181 | None:intergenic | 25.0% |
| ! | TTGCATAATTGATTATTGAC+AGG | - | chr5_1:65551270-65551289 | Msa0744670:intron | 25.0% |
| !!! | ATTTTTTTGTACTGTGCTTT+TGG | - | chr5_1:65551412-65551431 | Msa0744670:intron | 25.0% |
| !!! | TTACAAATGAAAAGCATTCA+CGG | + | chr5_1:65551569-65551588 | None:intergenic | 25.0% |
| !! | TAGTTTATCTGTATTGCTTT+TGG | - | chr5_1:65551602-65551621 | Msa0744670:intron | 25.0% |
| ! | AATTGCATAAAATGTCTGTA+AGG | + | chr5_1:65551766-65551785 | None:intergenic | 25.0% |
| !! | TTGTGATTTTTGTCTTGTAT+TGG | + | chr5_1:65551957-65551976 | None:intergenic | 25.0% |
| ! | GTAAATTAAAGCAACAACAA+AGG | - | chr5_1:65551998-65552017 | Msa0744670:intron | 25.0% |
| ! | CACTCAATTATGGATAAAAT+TGG | + | chr5_1:65552077-65552096 | None:intergenic | 25.0% |
| ! | TCTATATAATTGTTAGAGAC+TGG | - | chr5_1:65552223-65552242 | Msa0744670:CDS | 25.0% |
| ! | GTAGCTCAATGTTTATTATT+TGG | - | chr5_1:65552340-65552359 | Msa0744670:intron | 25.0% |
| ! | AGCTCAATGTTTATTATTTG+GGG | - | chr5_1:65552342-65552361 | Msa0744670:intron | 25.0% |
| ! | AAAAATATTCTTCAATCGGT+CGG | + | chr5_1:65552388-65552407 | None:intergenic | 25.0% |
| ! | TATAGAACAAATATAACCAG+GGG | + | chr5_1:65552456-65552475 | None:intergenic | 25.0% |
| ! | GATATAGAACAAATATAACC+AGG | + | chr5_1:65552458-65552477 | None:intergenic | 25.0% |
| !! | AATTACCATTTTACTTCTCT+TGG | + | chr5_1:65552766-65552785 | None:intergenic | 25.0% |
| ! | CAAAAAACAAATATGCAAAG+TGG | + | chr5_1:65552845-65552864 | None:intergenic | 25.0% |
| ! | CGGATTGAAAAAGAAAATAA+CGG | - | chr5_1:65552882-65552901 | Msa0744670:intron | 25.0% |
| !! | TTGTACAAAATCATGTTTTG+CGG | - | chr5_1:65552969-65552988 | Msa0744670:intron | 25.0% |
| ! | ATAAAAATACTGTCAGATAG+CGG | + | chr5_1:65553069-65553088 | None:intergenic | 25.0% |
| ! | TTTCGATTTAAATCTGAATC+CGG | - | chr5_1:65553551-65553570 | Msa0744670:intron | 25.0% |
| !!! | CATTTTTTCCATATCAGAAA+AGG | + | chr5_1:65553706-65553725 | None:intergenic | 25.0% |
| !! | CTTTTCTGATATGGAAAAAA+TGG | - | chr5_1:65553704-65553723 | Msa0744670:intron | 25.0% |
| !! | ATCAATCCTTTTACTTAAGT+TGG | + | chr5_1:65553751-65553770 | None:intergenic | 25.0% |
| ! | TAAAAGGATTGATGAAGATA+TGG | - | chr5_1:65553758-65553777 | Msa0744670:intron | 25.0% |
| ! | TTATGACTTCTCACATATAT+AGG | - | chr5_1:65553824-65553843 | Msa0744670:intron | 25.0% |
| !! | TAATCATTAGAAAGTTCTGA+TGG | - | chr5_1:65553848-65553867 | Msa0744670:CDS | 25.0% |
| !! | GGTTTAACTTCTTGTTGTTT+AGG | + | chr5_1:65549788-65549807 | None:intergenic | 30.0% |
| !!! | AACCATGTGGTTTTTTAAAG+GGG | + | chr5_1:65549873-65549892 | None:intergenic | 30.0% |
| GACAAGAAAAAAAACCGAAA+GGG | + | chr5_1:65549987-65550006 | None:intergenic | 30.0% | |
| ! | AAAAACAACCTTTTCAACGA+GGG | + | chr5_1:65550009-65550028 | None:intergenic | 30.0% |
| ! | AAAAAACAACCTTTTCAACG+AGG | + | chr5_1:65550010-65550029 | None:intergenic | 30.0% |
| TACTTGCTTAATATTGATGC+CGG | - | chr5_1:65550195-65550214 | Msa0744670:CDS | 30.0% | |
| !! | CAACAGAGTTATTTTATCTC+CGG | + | chr5_1:65550217-65550236 | None:intergenic | 30.0% |
| GAGATAAAATAACTCTGTTG+TGG | - | chr5_1:65550217-65550236 | Msa0744670:CDS | 30.0% | |
| GATAAAATAACTCTGTTGTG+GGG | - | chr5_1:65550219-65550238 | Msa0744670:CDS | 30.0% | |
| ATAAAATAACTCTGTTGTGG+GGG | - | chr5_1:65550220-65550239 | Msa0744670:CDS | 30.0% | |
| AACATTAGGGTACATAGTAA+GGG | + | chr5_1:65550424-65550443 | None:intergenic | 30.0% | |
| TAACATTAGGGTACATAGTA+AGG | + | chr5_1:65550425-65550444 | None:intergenic | 30.0% | |
| ! | ATGCTCATAGATATCGTTTT+GGG | - | chr5_1:65550480-65550499 | Msa0744670:CDS | 30.0% |
| AACTGTACTACACAATTTGT+CGG | + | chr5_1:65550591-65550610 | None:intergenic | 30.0% | |
| CAAATTGTGTAGTACAGTTA+CGG | - | chr5_1:65550592-65550611 | Msa0744670:intron | 30.0% | |
| GGTAAAGAAGATTTCATGAT+TGG | + | chr5_1:65550641-65550660 | None:intergenic | 30.0% | |
| TGCATTTACATGTCTTTGTT+TGG | - | chr5_1:65550693-65550712 | Msa0744670:intron | 30.0% | |
| AAGCATATAGGTACTTCATA+AGG | + | chr5_1:65550732-65550751 | None:intergenic | 30.0% | |
| ! | ATGAAGTACCTATATGCTTT+CGG | - | chr5_1:65550733-65550752 | Msa0744670:intron | 30.0% |
| ! | AATTGAAACCGAAAGCATAT+AGG | + | chr5_1:65550744-65550763 | None:intergenic | 30.0% |
| ATAGAAAACATGACCAAAAG+CGG | + | chr5_1:65550806-65550825 | None:intergenic | 30.0% | |
| AACAGATGCCAAAAAATGAA+TGG | + | chr5_1:65551041-65551060 | None:intergenic | 30.0% | |
| CATCTGTTAGAAATCTGTTT+GGG | - | chr5_1:65551053-65551072 | Msa0744670:CDS | 30.0% | |
| CAAGAAGATAAACAGTCATT+TGG | + | chr5_1:65551193-65551212 | None:intergenic | 30.0% | |
| TAATTGATTATTGACAGGCT+AGG | - | chr5_1:65551275-65551294 | Msa0744670:intron | 30.0% | |
| AAACAAGGACTAATTTCACA+AGG | - | chr5_1:65551843-65551862 | Msa0744670:intron | 30.0% | |
| AAGTTCAGTTGTCGAAAATT+AGG | + | chr5_1:65552313-65552332 | None:intergenic | 30.0% | |
| TTGTTCTATATCCTCTTTCT+TGG | - | chr5_1:65552466-65552485 | Msa0744670:CDS | 30.0% | |
| AAAAGCTTTACATGTCTTCT+TGG | - | chr5_1:65552493-65552512 | Msa0744670:CDS | 30.0% | |
| !!! | TTTCTTTTTCAATCCGTGAT+AGG | + | chr5_1:65552878-65552897 | None:intergenic | 30.0% |
| ! | TCCACTATATTATAGCTCTA+TGG | - | chr5_1:65553014-65553033 | Msa0744670:intron | 30.0% |
| ! | AGCTATAACATAGTGGAAAA+TGG | + | chr5_1:65553040-65553059 | None:intergenic | 30.0% |
| ! | AATGGCTTTTCTGCAATTTA+TGG | - | chr5_1:65553153-65553172 | Msa0744670:intron | 30.0% |
| !!! | CAGTTGATAGCTATTTTACT+CGG | + | chr5_1:65553215-65553234 | None:intergenic | 30.0% |
| !! | AACTGATTTTGAAGATGAAC+CGG | + | chr5_1:65553625-65553644 | None:intergenic | 30.0% |
| AATTTCAGAAGAGAAGATTG+AGG | - | chr5_1:65553665-65553684 | Msa0744670:intron | 30.0% | |
| AACTAGCCAACTTAAGTAAA+AGG | - | chr5_1:65553742-65553761 | Msa0744670:intron | 30.0% | |
| AGTGTTAGACAAATCCTTAT+TGG | - | chr5_1:65553905-65553924 | Msa0744670:five_prime_UTR | 30.0% | |
| ! | TAGACAAATCCTTATTGGTT+AGG | - | chr5_1:65553910-65553929 | Msa0744670:five_prime_UTR | 30.0% |
| !! | CTTCTTGTTGTTTAGGAGTT+TGG | + | chr5_1:65549781-65549800 | None:intergenic | 35.0% |
| ! | TTCCCCTTTAAAAAACCACA+TGG | - | chr5_1:65549868-65549887 | Msa0744670:three_prime_UTR | 35.0% |
| TGTTGTTGTGAAGAAGAAGA+TGG | + | chr5_1:65549905-65549924 | None:intergenic | 35.0% | |
| TTCTTCACAACAACAACATG+AGG | - | chr5_1:65549910-65549929 | Msa0744670:three_prime_UTR | 35.0% | |
| AAAAACCGAAAGGGTAAACA+AGG | + | chr5_1:65549978-65549997 | None:intergenic | 35.0% | |
| GGACAAGAAAAAAAACCGAA+AGG | + | chr5_1:65549988-65550007 | None:intergenic | 35.0% | |
| !!! | AGGTTTATTTTTGTTGGGGT+TGG | - | chr5_1:65550098-65550117 | Msa0744670:CDS | 35.0% |
| TAAAATAACTCTGTTGTGGG+GGG | - | chr5_1:65550221-65550240 | Msa0744670:CDS | 35.0% | |
| !! | CTATTTCGTACAAAGTGTTG+AGG | - | chr5_1:65550348-65550367 | Msa0744670:CDS | 35.0% |
| TGTATGCAACTTGGGTTTAA+GGG | - | chr5_1:65550378-65550397 | Msa0744670:CDS | 35.0% | |
| ! | GTTTAAGGGGTAGTAGTTTT+TGG | - | chr5_1:65550392-65550411 | Msa0744670:CDS | 35.0% |
| ! | CATGCTCATAGATATCGTTT+TGG | - | chr5_1:65550479-65550498 | Msa0744670:CDS | 35.0% |
| ACTAAGCAAATGCCCATTTA+TGG | + | chr5_1:65550662-65550681 | None:intergenic | 35.0% | |
| TCGGTTTCAATTACCAATAG+CGG | - | chr5_1:65550752-65550771 | Msa0744670:intron | 35.0% | |
| ATGATACGTTGTCATAGGTT+TGG | - | chr5_1:65550778-65550797 | Msa0744670:intron | 35.0% | |
| !! | TAGTGGATTGCAGAAAATAG+CGG | - | chr5_1:65550896-65550915 | Msa0744670:intron | 35.0% |
| GCATCTGTTAGAAATCTGTT+TGG | - | chr5_1:65551052-65551071 | Msa0744670:CDS | 35.0% | |
| TAGAAATCTGTTTGGGAACA+TGG | - | chr5_1:65551060-65551079 | Msa0744670:CDS | 35.0% | |
| GACACAATCAAATTGCTAGT+TGG | + | chr5_1:65551119-65551138 | None:intergenic | 35.0% | |
| ATTGAATTCTCACTCATTGC+AGG | - | chr5_1:65551164-65551183 | Msa0744670:intron | 35.0% | |
| ATGCAAGCTGATGAAGATAT+AGG | - | chr5_1:65551310-65551329 | Msa0744670:intron | 35.0% | |
| TGCAAGCTGATGAAGATATA+GGG | - | chr5_1:65551311-65551330 | Msa0744670:intron | 35.0% | |
| AGATATAGGGAAGATTGCAT+TGG | - | chr5_1:65551324-65551343 | Msa0744670:intron | 35.0% | |
| GACTACTTACAAACTAGAAG+AGG | + | chr5_1:65551355-65551374 | None:intergenic | 35.0% | |
| GAACATACGAGATAACACTT+AGG | - | chr5_1:65551530-65551549 | Msa0744670:intron | 35.0% | |
| ATACGAGATAACACTTAGGA+GGG | - | chr5_1:65551534-65551553 | Msa0744670:intron | 35.0% | |
| TTGGACCATGTTATATTCAG+CGG | - | chr5_1:65551621-65551640 | Msa0744670:intron | 35.0% | |
| ! | AGCTAGCAAAATTTTTACGC+AGG | - | chr5_1:65551647-65551666 | Msa0744670:intron | 35.0% |
| ! | GCTAGCAAAATTTTTACGCA+GGG | - | chr5_1:65551648-65551667 | Msa0744670:intron | 35.0% |
| ! | CTAGCAAAATTTTTACGCAG+GGG | - | chr5_1:65551649-65551668 | Msa0744670:intron | 35.0% |
| ! | TTTCGACAACTGAACTTGTT+TGG | - | chr5_1:65552316-65552335 | Msa0744670:intron | 35.0% |
| ! | TTCGACAACTGAACTTGTTT+GGG | - | chr5_1:65552317-65552336 | Msa0744670:intron | 35.0% |
| ! | TGTTTATTATTTGGGGTAGC+CGG | - | chr5_1:65552349-65552368 | Msa0744670:intron | 35.0% |
| !! | GGTCGGTATGTATTTTTATC+CGG | + | chr5_1:65552371-65552390 | None:intergenic | 35.0% |
| !!! | AGCTTTTAGAACCAAGAAAG+AGG | + | chr5_1:65552480-65552499 | None:intergenic | 35.0% |
| CAGGAATATTACTCAGCAAA+AGG | + | chr5_1:65552812-65552831 | None:intergenic | 35.0% | |
| GCCATAGAGCTATAATATAG+TGG | + | chr5_1:65553018-65553037 | None:intergenic | 35.0% | |
| GCTATAGAGCTATAACATAG+TGG | + | chr5_1:65553047-65553066 | None:intergenic | 35.0% | |
| TGATTATGGAAGTTCACTAC+TGG | - | chr5_1:65553118-65553137 | Msa0744670:intron | 35.0% | |
| ! | GATCTACAGTTTTACTTCCT+TGG | + | chr5_1:65553347-65553366 | None:intergenic | 35.0% |
| !! | TGTGAAGCATTGAAGCAAAA+CGG | - | chr5_1:65553402-65553421 | Msa0744670:intron | 35.0% |
| !!! | GGCTTACATTATTTTGAGTG+TGG | + | chr5_1:65553431-65553450 | None:intergenic | 35.0% |
| TTTAAATCTGAATCCGGATC+CGG | - | chr5_1:65553557-65553576 | Msa0744670:intron | 35.0% | |
| !! | ATTTTGAAGATGAACCGGAT+GGG | + | chr5_1:65553620-65553639 | None:intergenic | 35.0% |
| ! | ACAAATCCTTATTGGTTAGG+AGG | - | chr5_1:65553913-65553932 | Msa0744670:five_prime_UTR | 35.0% |
| TAGTCAGTACCTTCATTTAG+AGG | - | chr5_1:65553948-65553967 | Msa0744670:five_prime_UTR | 35.0% | |
| ATGGTGAAGACAAAACCATG+TGG | + | chr5_1:65549886-65549905 | None:intergenic | 40.0% | |
| AAAGGGTAAACAAGGAAAGG+AGG | + | chr5_1:65549970-65549989 | None:intergenic | 40.0% | |
| ! | CCTTTCCTTGTTTACCCTTT+CGG | - | chr5_1:65549970-65549989 | Msa0744670:three_prime_UTR | 40.0% |
| TTTCTTGTCCCTCGTTGAAA+AGG | - | chr5_1:65549998-65550017 | Msa0744670:exon | 40.0% | |
| !! | TATGGATGATGGGTTTCTCT+TGG | - | chr5_1:65550133-65550152 | Msa0744670:CDS | 40.0% |
| !! | TTTCGTACAAAGTGTTGAGG+AGG | - | chr5_1:65550351-65550370 | Msa0744670:CDS | 40.0% |
| GTGTATGCAACTTGGGTTTA+AGG | - | chr5_1:65550377-65550396 | Msa0744670:CDS | 40.0% | |
| GTATGCAACTTGGGTTTAAG+GGG | - | chr5_1:65550379-65550398 | Msa0744670:CDS | 40.0% | |
| AACGTATCATATGCCGCTAT+TGG | + | chr5_1:65550768-65550787 | None:intergenic | 40.0% | |
| GGCATATGATACGTTGTCAT+AGG | - | chr5_1:65550773-65550792 | Msa0744670:intron | 40.0% | |
| TGAAATAGCAGACAGTTTCG+CGG | - | chr5_1:65550939-65550958 | Msa0744670:intron | 40.0% | |
| CTTACAAACTAGAAGAGGCA+CGG | + | chr5_1:65551350-65551369 | None:intergenic | 40.0% | |
| CATACGAGATAACACTTAGG+AGG | - | chr5_1:65551533-65551552 | Msa0744670:intron | 40.0% | |
| TACGAGATAACACTTAGGAG+GGG | - | chr5_1:65551535-65551554 | Msa0744670:intron | 40.0% | |
| ! | TCGACAACTGAACTTGTTTG+GGG | - | chr5_1:65552318-65552337 | Msa0744670:intron | 40.0% |
| !!! | TTTTTCTTTTGGGGTAGCCA+AGG | - | chr5_1:65552404-65552423 | Msa0744670:intron | 40.0% |
| AGAACAAATATAACCAGGGG+CGG | + | chr5_1:65552453-65552472 | None:intergenic | 40.0% | |
| GTGAGCAAAGTTCCTGATTT+AGG | - | chr5_1:65552573-65552592 | Msa0744670:intron | 40.0% | |
| AGCAAAGTTCCTGATTTAGG+CGG | - | chr5_1:65552576-65552595 | Msa0744670:intron | 40.0% | |
| GGAGACCAAGAGAAGTAAAA+TGG | - | chr5_1:65552758-65552777 | Msa0744670:intron | 40.0% | |
| !! | TACTGGCTTGTGAATGCAAA+TGG | - | chr5_1:65553135-65553154 | Msa0744670:intron | 40.0% |
| TAATGTAAGCCCAGAAATCG+AGG | - | chr5_1:65553440-65553459 | Msa0744670:intron | 40.0% | |
| GCTTAACTTCCTCGATTTCT+GGG | + | chr5_1:65553452-65553471 | None:intergenic | 40.0% | |
| AGCTTAACTTCCTCGATTTC+TGG | + | chr5_1:65553453-65553472 | None:intergenic | 40.0% | |
| GAACAATGCTTAACTTCCTC+AGG | + | chr5_1:65553495-65553514 | None:intergenic | 40.0% | |
| ! | GGAAGTTAAGCATTGTTCAC+CGG | - | chr5_1:65553497-65553516 | Msa0744670:intron | 40.0% |
| !!! | ACTTCAGCTGGTTTTCTTAC+CGG | + | chr5_1:65553519-65553538 | None:intergenic | 40.0% |
| ATTTCATCCATGTCGTCATC+CGG | + | chr5_1:65553579-65553598 | None:intergenic | 40.0% | |
| !! | GATTTTGAAGATGAACCGGA+TGG | + | chr5_1:65553621-65553640 | None:intergenic | 40.0% |
| TATCAGAAAAGGACCATCCA+GGG | + | chr5_1:65553695-65553714 | None:intergenic | 40.0% | |
| ATATCAGAAAAGGACCATCC+AGG | + | chr5_1:65553696-65553715 | None:intergenic | 40.0% | |
| ! | TGGATGGTCCTTTTCTGATA+TGG | - | chr5_1:65553695-65553714 | Msa0744670:intron | 40.0% |
| !! | CTTAAGTTGGCTAGTTGTGA+GGG | + | chr5_1:65553738-65553757 | None:intergenic | 40.0% |
| !! | ACTTAAGTTGGCTAGTTGTG+AGG | + | chr5_1:65553739-65553758 | None:intergenic | 40.0% |
| TCAATGCCTCCTAACCAATA+AGG | + | chr5_1:65553922-65553941 | None:intergenic | 40.0% | |
| TCTACTGAGCCTCTAAATGA+AGG | + | chr5_1:65553960-65553979 | None:intergenic | 40.0% | |
| TTGAAGAAGACGAAGAGGGA+AGG | + | chr5_1:65549837-65549856 | None:intergenic | 45.0% | |
| GAAAGGAGGAACTTACAGCA+GGG | + | chr5_1:65549956-65549975 | None:intergenic | 45.0% | |
| CCGAAAGGGTAAACAAGGAA+AGG | + | chr5_1:65549973-65549992 | None:intergenic | 45.0% | |
| GTACAGTTACGGTTCCTGAT+CGG | - | chr5_1:65550603-65550622 | Msa0744670:intron | 45.0% | |
| GAAATAGCAGACAGTTTCGC+GGG | - | chr5_1:65550940-65550959 | Msa0744670:intron | 45.0% | |
| CTTCGCCGCTGAATATAACA+TGG | + | chr5_1:65551629-65551648 | None:intergenic | 45.0% | |
| ACAGAACTCGCGCAAGAAAT+AGG | + | chr5_1:65552669-65552688 | None:intergenic | 45.0% | |
| ATATGCAAAGTGGTGTGCAG+TGG | + | chr5_1:65552835-65552854 | None:intergenic | 45.0% | |
| TTGTGCAGTGTTGCCTATCA+CGG | - | chr5_1:65552862-65552881 | Msa0744670:intron | 45.0% | |
| TTCACCAGTCAAAGAACCTG+AGG | - | chr5_1:65553476-65553495 | Msa0744670:intron | 45.0% | |
| ACTTCCTCAGGTTCTTTGAC+TGG | + | chr5_1:65553483-65553502 | None:intergenic | 45.0% | |
| GGTAAGAAAACCAGCTGAAG+TGG | - | chr5_1:65553518-65553537 | Msa0744670:intron | 45.0% | |
| TTTCGAACTACCACTTCAGC+TGG | + | chr5_1:65553531-65553550 | None:intergenic | 45.0% | |
| GAGAAGATTGAGGAATACCC+TGG | - | chr5_1:65553675-65553694 | Msa0744670:intron | 45.0% | |
| AGATTGAGGAATACCCTGGA+TGG | - | chr5_1:65553679-65553698 | Msa0744670:intron | 45.0% | |
| CGCGTTGAAGAAGACGAAGA+GGG | + | chr5_1:65549841-65549860 | None:intergenic | 50.0% | |
| ACGCGTTGAAGAAGACGAAG+AGG | + | chr5_1:65549842-65549861 | None:intergenic | 50.0% | |
| GGAAAGGAGGAACTTACAGC+AGG | + | chr5_1:65549957-65549976 | None:intergenic | 50.0% | |
| ! | ACTCTGTTGTGGGGGGTTTT+TGG | - | chr5_1:65550228-65550247 | Msa0744670:CDS | 50.0% |
| GAGGTGCGTGTATGCAACTT+GGG | - | chr5_1:65550370-65550389 | Msa0744670:CDS | 50.0% | |
| ! | CATAGGTTTGGCACCGCTTT+TGG | - | chr5_1:65550790-65550809 | Msa0744670:intron | 50.0% |
| GGCTGTCATGCTGTGTACTA+CGG | - | chr5_1:65550844-65550863 | Msa0744670:intron | 50.0% | |
| ATGCTGTGTACTACGGTACG+AGG | - | chr5_1:65550851-65550870 | Msa0744670:intron | 50.0% | |
| TGCTGTGTACTACGGTACGA+GGG | - | chr5_1:65550852-65550871 | Msa0744670:intron | 50.0% | |
| AGTTTCGCGGGCAATTGTGT+CGG | - | chr5_1:65550952-65550971 | Msa0744670:intron | 50.0% | |
| CGGTTCCTTTCATGTAGGAG+GGG | + | chr5_1:65552433-65552452 | None:intergenic | 50.0% | |
| GCGGTTCCTTTCATGTAGGA+GGG | + | chr5_1:65552434-65552453 | None:intergenic | 50.0% | |
| ACGACCAAGCTGTCACTAAG+AGG | - | chr5_1:65552616-65552635 | Msa0744670:intron | 50.0% | |
| ACCAAGCTGTCACTAAGAGG+AGG | - | chr5_1:65552619-65552638 | Msa0744670:intron | 50.0% | |
| ACCTCCTCTTAGTGACAGCT+TGG | + | chr5_1:65552623-65552642 | None:intergenic | 50.0% | |
| TGACGATGATGACAGCGATG+AGG | - | chr5_1:65552737-65552756 | Msa0744670:intron | 50.0% | |
| AACATGCGCATACCAGTGGA+AGG | - | chr5_1:65553286-65553305 | Msa0744670:intron | 50.0% | |
| ACATGCGCATACCAGTGGAA+GGG | - | chr5_1:65553287-65553306 | Msa0744670:intron | 50.0% | |
| ACACCAACTCCTATCCCATC+CGG | - | chr5_1:65553603-65553622 | Msa0744670:intron | 50.0% | |
| GAAGATGAACCGGATGGGAT+AGG | + | chr5_1:65553615-65553634 | None:intergenic | 50.0% | |
| ! | GGAGGTGCGTGTATGCAACT+TGG | - | chr5_1:65550369-65550388 | Msa0744670:CDS | 55.0% |
| TCATGTAGGAGGGGTAGCCT+TGG | + | chr5_1:65552424-65552443 | None:intergenic | 55.0% | |
| GGCTACCCCTCCTACATGAA+AGG | - | chr5_1:65552425-65552444 | Msa0744670:intron | 55.0% | |
| GGCGGTTCCTTTCATGTAGG+AGG | + | chr5_1:65552435-65552454 | None:intergenic | 55.0% | |
| AGGGGCGGTTCCTTTCATGT+AGG | + | chr5_1:65552438-65552457 | None:intergenic | 55.0% | |
| TACATGAAAGGAACCGCCCC+TGG | - | chr5_1:65552437-65552456 | Msa0744670:intron | 55.0% | |
| GCAGCAGAACCGCCTAAATC+AGG | + | chr5_1:65552588-65552607 | None:intergenic | 55.0% | |
| TTAGGCGGTTCTGCTGCAAC+TGG | - | chr5_1:65552591-65552610 | Msa0744670:intron | 55.0% | |
| CTCGCGCAAGAAATAGGAGC+AGG | + | chr5_1:65552663-65552682 | None:intergenic | 55.0% | |
| CGAGAACATGCGCATACCAG+TGG | - | chr5_1:65553282-65553301 | Msa0744670:intron | 55.0% | |
| CATGCGCATACCAGTGGAAG+GGG | - | chr5_1:65553288-65553307 | Msa0744670:intron | 55.0% | |
| TCCATGTCGTCATCCGGATC+CGG | + | chr5_1:65553573-65553592 | None:intergenic | 55.0% | |
| !! | GGATGGGATAGGAGTTGGTG+TGG | + | chr5_1:65553604-65553623 | None:intergenic | 55.0% |
| GAACCGGATGGGATAGGAGT+TGG | + | chr5_1:65553609-65553628 | None:intergenic | 55.0% | |
| ! | GGATACGCAACGCACCGATC+AGG | + | chr5_1:65550620-65550639 | None:intergenic | 60.0% |
| GCAAAGTGGTGTGCAGTGGC+AGG | + | chr5_1:65552831-65552850 | None:intergenic | 60.0% | |
| CGCATGTTCTCGCTGTGCGA+AGG | + | chr5_1:65553274-65553293 | None:intergenic | 60.0% | |
| ATACCAGTGGAAGGGGCGGT+AGG | - | chr5_1:65553295-65553314 | Msa0744670:intron | 60.0% | |
| TACCAGTGGAAGGGGCGGTA+GGG | - | chr5_1:65553296-65553315 | Msa0744670:intron | 60.0% | |
| TCCGGATCCGGATGACGACA+TGG | - | chr5_1:65553569-65553588 | Msa0744670:intron | 60.0% | |
| GCGCATACCAGTGGAAGGGG+CGG | - | chr5_1:65553291-65553310 | Msa0744670:intron | 65.0% | |
| ACCAGTGGAAGGGGCGGTAG+GGG | - | chr5_1:65553297-65553316 | Msa0744670:intron | 65.0% | |
| ACCCCTACCGCCCCTTCCAC+TGG | + | chr5_1:65553301-65553320 | None:intergenic | 70.0% | |
| GGAAGGGGCGGTAGGGGTAG+AGG | - | chr5_1:65553303-65553322 | Msa0744670:intron | 70.0% | |
| GGGCGGTAGGGGTAGAGGCA+GGG | - | chr5_1:65553308-65553327 | Msa0744670:intron | 70.0% | |
| GGCGGTAGGGGTAGAGGCAG+GGG | - | chr5_1:65553309-65553328 | Msa0744670:intron | 70.0% | |
| AGGGGTAGAGGCAGGGGACG+TGG | - | chr5_1:65553315-65553334 | Msa0744670:intron | 70.0% | |
| AGAGGCAGGGGACGTGGCTG+CGG | - | chr5_1:65553321-65553340 | Msa0744670:intron | 70.0% | |
| GGGGCGGTAGGGGTAGAGGC+AGG | - | chr5_1:65553307-65553326 | Msa0744670:intron | 75.0% | |
| AGGGGACGTGGCTGCGGCCA+AGG | - | chr5_1:65553327-65553346 | Msa0744670:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 65549778 | 65554027 | 65549778 | ID=Msa0744670;Name=Msa0744670 |
| chr5_1 | mRNA | 65549778 | 65554027 | 65549778 | ID=Msa0744670-mRNA-1;Parent=Msa0744670;Name=Msa0744670-mRNA-1;_AED=0.05;_eAED=0.05;_QI=149|1|1|1|1|1|6|224|298 |
| chr5_1 | exon | 65549778 | 65550523 | 65549778 | ID=Msa0744670-mRNA-1:exon:19513;Parent=Msa0744670-mRNA-1 |
| chr5_1 | exon | 65551026 | 65551083 | 65551026 | ID=Msa0744670-mRNA-1:exon:19512;Parent=Msa0744670-mRNA-1 |
| chr5_1 | exon | 65551165 | 65551281 | 65551165 | ID=Msa0744670-mRNA-1:exon:19511;Parent=Msa0744670-mRNA-1 |
| chr5_1 | exon | 65552221 | 65552314 | 65552221 | ID=Msa0744670-mRNA-1:exon:19510;Parent=Msa0744670-mRNA-1 |
| chr5_1 | exon | 65552441 | 65552513 | 65552441 | ID=Msa0744670-mRNA-1:exon:19509;Parent=Msa0744670-mRNA-1 |
| chr5_1 | exon | 65553846 | 65554027 | 65553846 | ID=Msa0744670-mRNA-1:exon:19508;Parent=Msa0744670-mRNA-1 |
| chr5_1 | five_prime_UTR | 65553879 | 65554027 | 65553879 | ID=Msa0744670-mRNA-1:five_prime_utr;Parent=Msa0744670-mRNA-1 |
| chr5_1 | CDS | 65553846 | 65553878 | 65553846 | ID=Msa0744670-mRNA-1:cds;Parent=Msa0744670-mRNA-1 |
| chr5_1 | CDS | 65552441 | 65552513 | 65552441 | ID=Msa0744670-mRNA-1:cds;Parent=Msa0744670-mRNA-1 |
| chr5_1 | CDS | 65552221 | 65552314 | 65552221 | ID=Msa0744670-mRNA-1:cds;Parent=Msa0744670-mRNA-1 |
| chr5_1 | CDS | 65551165 | 65551281 | 65551165 | ID=Msa0744670-mRNA-1:cds;Parent=Msa0744670-mRNA-1 |
| chr5_1 | CDS | 65551026 | 65551083 | 65551026 | ID=Msa0744670-mRNA-1:cds;Parent=Msa0744670-mRNA-1 |
| chr5_1 | CDS | 65550002 | 65550523 | 65550002 | ID=Msa0744670-mRNA-1:cds;Parent=Msa0744670-mRNA-1 |
| chr5_1 | three_prime_UTR | 65549778 | 65550001 | 65549778 | ID=Msa0744670-mRNA-1:three_prime_utr;Parent=Msa0744670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
