Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821010 | XP_013454332.1 | 73.196 | 291 | 26 | 4 | 1 | 240 | 1 | 290 | 2.90e-114 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821010 | A0A072UGZ0 | 73.196 | 291 | 26 | 4 | 1 | 240 | 1 | 290 | 1.38e-114 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052860 | Msa0821010 | 0.800935 | 1.140922e-48 | -8.615850e-47 |
| Msa0083280 | Msa0821010 | 0.801934 | 7.122588e-49 | -8.615850e-47 |
| Msa0086420 | Msa0821010 | 0.824961 | 6.076767e-54 | -8.615850e-47 |
| Msa0608710 | Msa0821010 | 0.821694 | 3.523666e-53 | -8.615850e-47 |
| Msa0610130 | Msa0821010 | 0.816419 | 5.584302e-52 | -8.615850e-47 |
| Msa0654620 | Msa0821010 | 0.802331 | 5.902395e-49 | -8.615850e-47 |
| Msa0679550 | Msa0821010 | 0.813951 | 1.973369e-51 | -8.615850e-47 |
| Msa0703910 | Msa0821010 | 0.804393 | 2.207062e-49 | -8.615850e-47 |
| Msa0716960 | Msa0821010 | 0.815091 | 1.103866e-51 | -8.615850e-47 |
| Msa0717010 | Msa0821010 | 0.810438 | 1.152445e-50 | -8.615850e-47 |
| Msa0744670 | Msa0821010 | 0.812713 | 3.691127e-51 | -8.615850e-47 |
| Msa0744700 | Msa0821010 | 0.923530 | 2.353133e-89 | -8.615850e-47 |
| Msa0821010 | Msa0994370 | 0.804769 | 1.842696e-49 | -8.615850e-47 |
| Msa0821010 | Msa1034150 | 0.809959 | 1.462275e-50 | -8.615850e-47 |
| Msa0821010 | Msa1207310 | 0.822748 | 2.006371e-53 | -8.615850e-47 |
| Msa0821010 | Msa1270660 | 0.831269 | 1.836801e-55 | -8.615850e-47 |
| Msa0821010 | Msa1270730 | 0.814464 | 1.520146e-51 | -8.615850e-47 |
| Msa0821010 | Msa1295330 | 0.801845 | 7.430307e-49 | -8.615850e-47 |
| Msa0821010 | Msa1307180 | 0.803876 | 2.827231e-49 | -8.615850e-47 |
| Msa0821010 | Msa1316360 | 0.805558 | 1.259804e-49 | -8.615850e-47 |
| Msa0821010 | Msa1331320 | 0.807889 | 4.053569e-50 | -8.615850e-47 |
| Msa0821010 | Msa1331350 | 0.821424 | 4.066958e-53 | -8.615850e-47 |
| Msa0821010 | Msa1335230 | 0.812297 | 4.551076e-51 | -8.615850e-47 |
| Msa0821010 | Msa1371940 | 0.800333 | 1.513747e-48 | -8.615850e-47 |
| Msa0821010 | Msa1397120 | 0.801278 | 9.707484e-49 | -8.615850e-47 |
| Msa0821010 | Msa1403890 | 0.806919 | 6.511200e-50 | -8.615850e-47 |
| Msa0821010 | Msa1407470 | 0.805044 | 1.614195e-49 | -8.615850e-47 |
| Msa0821010 | Msa1423820 | 0.807853 | 4.126969e-50 | -8.615850e-47 |
| Msa0821010 | Msa1444260 | 0.808268 | 3.366030e-50 | -8.615850e-47 |
| Msa0821010 | Msa1444740 | 0.822728 | 2.028158e-53 | -8.615850e-47 |
| Msa0124550 | Msa0821010 | 0.801132 | 1.040173e-48 | -8.615850e-47 |
| Msa0137710 | Msa0821010 | -0.812454 | 4.205794e-51 | -8.615850e-47 |
| Msa0138020 | Msa0821010 | 0.817064 | 4.002900e-52 | -8.615850e-47 |
| Msa0175540 | Msa0821010 | 0.810797 | 9.639733e-51 | -8.615850e-47 |
| Msa0187490 | Msa0821010 | 0.810546 | 1.092563e-50 | -8.615850e-47 |
| Msa0376910 | Msa0821010 | 0.809329 | 1.996899e-50 | -8.615850e-47 |
| Msa0392270 | Msa0821010 | 0.804389 | 2.211548e-49 | -8.615850e-47 |
| Msa0471900 | Msa0821010 | 0.803954 | 2.723493e-49 | -8.615850e-47 |
| Msa0262370 | Msa0821010 | 0.818213 | 2.204697e-52 | -8.615850e-47 |
| Msa0485490 | Msa0821010 | 0.811398 | 7.141023e-51 | -8.615850e-47 |
| Msa0518170 | Msa0821010 | 0.804140 | 2.492453e-49 | -8.615850e-47 |
| Msa0549780 | Msa0821010 | 0.806090 | 9.739579e-50 | -8.615850e-47 |
| Msa0587190 | Msa0821010 | 0.803572 | 3.269843e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821010 | MtrunA17_Chr5g0441241 | 70.803 | 274 | 28 | 4 | 18 | 240 | 1 | 273 | 7.33e-105 | 305 |
| Msa0821010 | MtrunA17_Chr3g0081161 | 36.242 | 298 | 115 | 10 | 1 | 241 | 1 | 280 | 8.73e-36 | 129 |
| Msa0821010 | MtrunA17_Chr8g0354151 | 32.268 | 313 | 129 | 7 | 1 | 245 | 1 | 298 | 1.58e-31 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821010 | AT3G12480.1 | 35.548 | 301 | 115 | 10 | 1 | 241 | 1 | 282 | 1.82e-21 | 91.3 |
| Msa0821010 | AT5G19490.1 | 31.333 | 300 | 116 | 9 | 1 | 251 | 1 | 259 | 7.50e-18 | 80.9 |
Find 74 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTAACTTCCTCGATTTC+TGG | 0.151578 | 5_3:+58734406 | None:intergenic |
| CTTCTTGTTGTTTAGGAGTT+TGG | 0.239094 | 5_3:+58738081 | None:intergenic |
| AACTAGCCAACTTAAGTAAA+AGG | 0.241392 | 5_3:-58734114 | Msa0821010:CDS |
| GGTTTAACTTCTTGTTGTTT+AGG | 0.280960 | 5_3:+58738074 | None:intergenic |
| GTGAGCAAAGTTCCTGATTT+AGG | 0.300821 | 5_3:-58735285 | Msa0821010:CDS |
| TAGTCAGTACCTTCATTTAG+AGG | 0.303078 | 5_3:-58733908 | Msa0821010:three_prime_UTR |
| GGAAGGGGCGGTAGGGGTAG+AGG | 0.322327 | 5_3:-58734553 | Msa0821010:CDS |
| AGTGTTAGACAAATCCTTAT+TGG | 0.327540 | 5_3:-58733951 | Msa0821010:three_prime_UTR |
| ATGCAAGCTGATGAAGATAT+AGG | 0.348420 | 5_3:-58736548 | Msa0821010:CDS |
| TTATGACTTCTCACATATAT+AGG | 0.351806 | 5_3:-58734032 | Msa0821010:three_prime_UTR |
| GCTTAACTTCCTCGATTTCT+GGG | 0.371274 | 5_3:+58734407 | None:intergenic |
| ACTTAAGTTGGCTAGTTGTA+AGG | 0.372538 | 5_3:+58734120 | None:intergenic |
| GGAGACCAAGAGAAGTAAAA+TGG | 0.382690 | 5_3:-58735100 | Msa0821010:intron |
| AGGGGTAGAGGCAGGGGACG+TGG | 0.387631 | 5_3:-58734541 | Msa0821010:CDS |
| TAGACAAATCCTTATTGGTT+AGG | 0.392591 | 5_3:-58733946 | Msa0821010:three_prime_UTR |
| TCAATGCCTCCTAACCAATA+AGG | 0.394814 | 5_3:+58733937 | None:intergenic |
| TAAAAGGATTGATGAAGATA+TGG | 0.395167 | 5_3:-58734098 | Msa0821010:CDS |
| TTTCGATTTAAATCTGAATC+CGG | 0.397431 | 5_3:-58734305 | Msa0821010:CDS |
| GGGGCGGTAGGGGTAGAGGC+AGG | 0.398203 | 5_3:-58734549 | Msa0821010:CDS |
| GGCGGTAGGGGTAGAGGCAG+GGG | 0.408013 | 5_3:-58734547 | Msa0821010:CDS |
| TGCAAGCTGATGAAGATATA+GGG | 0.408049 | 5_3:-58736547 | Msa0821010:CDS |
| AGGGGACGTGGCCGCGGCCA+AGG | 0.424123 | 5_3:-58734529 | Msa0821010:CDS |
| AGAGGCAGGGGACGTGGCCG+CGG | 0.424913 | 5_3:-58734535 | Msa0821010:CDS |
| GCAGCAGAACCGCCTAAATC+AGG | 0.433277 | 5_3:+58735273 | None:intergenic |
| GAACAATGCTTAACTTCCTC+AGG | 0.444484 | 5_3:+58734364 | None:intergenic |
| TCCATGTCGTCATCCGGATC+CGG | 0.447116 | 5_3:+58734286 | None:intergenic |
| ACTTCCTCAGGTTCTTTGAC+TGG | 0.454445 | 5_3:+58734376 | None:intergenic |
| TTTCGAACTACCACTTCAGC+TGG | 0.460443 | 5_3:+58734328 | None:intergenic |
| TTAGGCGGTTCTGCTGCAAC+TGG | 0.479475 | 5_3:-58735267 | Msa0821010:CDS |
| CTTAAGTTGGCTAGTTGTAA+GGG | 0.481167 | 5_3:+58734121 | None:intergenic |
| ATTTCATCCATGTCGTCATC+CGG | 0.486479 | 5_3:+58734280 | None:intergenic |
| ACAAATCCTTATTGGTTAGG+AGG | 0.487491 | 5_3:-58733943 | Msa0821010:three_prime_UTR |
| ACCAGTGGAAGGGGCGGTAG+GGG | 0.488619 | 5_3:-58734559 | Msa0821010:CDS |
| ATACCAGTGGAAGGGGCGGT+AGG | 0.493238 | 5_3:-58734561 | Msa0821010:CDS |
| TACCAGTGGAAGGGGCGGTA+GGG | 0.494206 | 5_3:-58734560 | Msa0821010:CDS |
| GAAGATGAACCGGATGGGAT+AGG | 0.503037 | 5_3:+58734244 | None:intergenic |
| ACCCCTACCGCCCCTTCCAC+TGG | 0.506809 | 5_3:+58734558 | None:intergenic |
| TTTAAATCTGAATCCGGATC+CGG | 0.510680 | 5_3:-58734299 | Msa0821010:CDS |
| GGGCGGTAGGGGTAGAGGCA+GGG | 0.517634 | 5_3:-58734548 | Msa0821010:CDS |
| CATGCGCATACCAGTGGAAG+GGG | 0.522977 | 5_3:-58734568 | Msa0821010:CDS |
| TCCGGATCCGGATGACGACA+TGG | 0.537250 | 5_3:-58734287 | Msa0821010:CDS |
| GACTACTTACAAACTAGAAG+AGG | 0.544073 | 5_3:+58736506 | None:intergenic |
| TGTGAAGCATTGAAGCAAAA+CGG | 0.548283 | 5_3:-58734454 | Msa0821010:CDS |
| ACCTCCTCTTAGTGACAGCT+TGG | 0.548550 | 5_3:+58735238 | None:intergenic |
| AATTTCAGAAGAGAAGATTG+AGG | 0.553548 | 5_3:-58734191 | Msa0821010:CDS |
| TAATCATTAGAAAGTTCTGA+TGG | 0.554324 | 5_3:-58734008 | Msa0821010:three_prime_UTR |
| GAACCGGATGGGATAGGAGT+TGG | 0.555156 | 5_3:+58734250 | None:intergenic |
| GAGAAGATTGAGGAATACCC+TGG | 0.559641 | 5_3:-58734181 | Msa0821010:CDS |
| TCTACTGAGCCTCTAAATGA+AGG | 0.562344 | 5_3:+58733899 | None:intergenic |
| ATATCAGAAAAGGACCATCC+AGG | 0.563775 | 5_3:+58734163 | None:intergenic |
| GGAAGTTAAGCATTGTTCAC+CGG | 0.563902 | 5_3:-58734359 | Msa0821010:CDS |
| ACACCAACTCCTATCCCATC+CGG | 0.568917 | 5_3:-58734253 | Msa0821010:CDS |
| TTCTTCACAACAACAACATG+AGG | 0.578374 | 5_3:-58737949 | Msa0821010:exon |
| AACATGCGCATACCAGTGGA+AGG | 0.579451 | 5_3:-58734570 | Msa0821010:CDS |
| ACGACCAAGCTGTCACTAAG+AGG | 0.580960 | 5_3:-58735242 | Msa0821010:CDS |
| GGTAAGAAAACCAGCTGAAG+TGG | 0.584865 | 5_3:-58734338 | Msa0821010:CDS |
| TATCAGAAAAGGACCATCCA+GGG | 0.585690 | 5_3:+58734164 | None:intergenic |
| TTGAAGAAGACGAAGAGGGA+AGG | 0.589461 | 5_3:+58738025 | None:intergenic |
| AGATATAGGGAAGATTGCAT+TGG | 0.616410 | 5_3:-58736534 | Msa0821010:CDS |
| TAATGTAAGCCCAGAAATCG+AGG | 0.616586 | 5_3:-58734416 | Msa0821010:CDS |
| TGTTGTTGTGAAGAAGAAGA+TGG | 0.620292 | 5_3:+58737957 | None:intergenic |
| AGCAAAGTTCCTGATTTAGG+CGG | 0.623500 | 5_3:-58735282 | Msa0821010:CDS |
| ACGCGTTGAAGAAGACGAAG+AGG | 0.626457 | 5_3:+58738020 | None:intergenic |
| CGAGAACATGCGCATACCAG+TGG | 0.633781 | 5_3:-58734574 | Msa0821010:CDS |
| GGATGGGATAGGAGTTGGTG+TGG | 0.637023 | 5_3:+58734255 | None:intergenic |
| GCGCATACCAGTGGAAGGGG+CGG | 0.637896 | 5_3:-58734565 | Msa0821010:CDS |
| ACATGCGCATACCAGTGGAA+GGG | 0.649450 | 5_3:-58734569 | Msa0821010:CDS |
| CGCGTTGAAGAAGACGAAGA+GGG | 0.650949 | 5_3:+58738021 | None:intergenic |
| AGATTGAGGAATACCCTGGA+TGG | 0.653139 | 5_3:-58734177 | Msa0821010:CDS |
| TTCACCAGTCAAAGAACCTG+AGG | 0.656260 | 5_3:-58734380 | Msa0821010:CDS |
| CTTACAAACTAGAAGAGGCA+CGG | 0.671946 | 5_3:+58736511 | None:intergenic |
| ACCAAGCTGTCACTAAGAGG+AGG | 0.677608 | 5_3:-58735239 | Msa0821010:intron |
| TGACGATGATGACAGCGATG+AGG | 0.685240 | 5_3:-58735121 | Msa0821010:CDS |
| ATGGTGAAGACAAAACCTTG+TGG | 0.755545 | 5_3:+58737976 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTAAAAAAAAATGTTAAA+AGG | + | chr5_3:58735069-58735088 | None:intergenic | 10.0% |
| !!! | TAAATTTTTTTCTTTATAGT+TGG | + | chr5_3:58735749-58735768 | None:intergenic | 10.0% |
| !! | TATCTTTAAATTTAATATGT+TGG | + | chr5_3:58735775-58735794 | None:intergenic | 10.0% |
| !! | TTTCACAAAAAAAAAAAAAT+CGG | - | chr5_3:58735878-58735897 | Msa0821010:intron | 10.0% |
| !! | AAATTTAACAAAATTAAACA+AGG | - | chr5_3:58735902-58735921 | Msa0821010:intron | 10.0% |
| !! | ATTGATATATTTATTTATGT+TGG | + | chr5_3:58736333-58736352 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAATCAGT+TGG | + | chr5_3:58737266-58737285 | None:intergenic | 10.0% |
| !!! | TTTAGATTTTGTAAAGATTT+TGG | + | chr5_3:58733887-58733906 | None:intergenic | 15.0% |
| !!! | TTTTTCTGTTTTTGTTTTAT+TGG | - | chr5_3:58734120-58734139 | Msa0821010:CDS | 15.0% |
| !!! | TTTTCTGTTTTTGTTTTATT+GGG | - | chr5_3:58734121-58734140 | Msa0821010:CDS | 15.0% |
| !! | TAAACCTAATGATAATAATA+AGG | + | chr5_3:58734158-58734177 | None:intergenic | 15.0% |
| !! | TCCTTTATTAAAATTTGATA+TGG | - | chr5_3:58734612-58734631 | Msa0821010:intron | 15.0% |
| !!! | ACCATATCAAATTTTAATAA+AGG | + | chr5_3:58734616-58734635 | None:intergenic | 15.0% |
| !!! | TATATTGTAATTTGTAAACA+GGG | - | chr5_3:58734897-58734916 | Msa0821010:intron | 15.0% |
| !! | GTTTCAAAAAACAAAAAATA+GGG | + | chr5_3:58735463-58735482 | None:intergenic | 15.0% |
| !! | TGTTTCAAAAAACAAAAAAT+AGG | + | chr5_3:58735464-58735483 | None:intergenic | 15.0% |
| !!! | TTACAGATTAAATTTCTTTT+CGG | + | chr5_3:58736003-58736022 | None:intergenic | 15.0% |
| !!! | ATTTTTCAATGTAAACTAAT+AGG | - | chr5_3:58736194-58736213 | Msa0821010:intron | 15.0% |
| !! | ATAGTCATAAACAAATTAAA+TGG | + | chr5_3:58736245-58736264 | None:intergenic | 15.0% |
| !! | AAGAAAAAATATTCTTCAAT+CGG | + | chr5_3:58736466-58736485 | None:intergenic | 15.0% |
| !!! | TTGAAGAATATTTTTTCTTT+TGG | - | chr5_3:58736467-58736486 | Msa0821010:intron | 15.0% |
| !!! | TGAAGAATATTTTTTCTTTT+GGG | - | chr5_3:58736468-58736487 | Msa0821010:intron | 15.0% |
| !!! | TGATTTGTATTTTGTATATT+AGG | - | chr5_3:58736774-58736793 | Msa0821010:intron | 15.0% |
| !!! | AATCACTTAAATCAATTTTT+TGG | + | chr5_3:58737177-58737196 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTAAGTGATTA+TGG | - | chr5_3:58737178-58737197 | Msa0821010:intron | 15.0% |
| !!! | ACAATTAGAAAAGATTTTTT+AGG | - | chr5_3:58737947-58737966 | Msa0821010:exon | 15.0% |
| !!! | ATTTTGTAAAGATTTTGGTT+TGG | + | chr5_3:58733882-58733901 | None:intergenic | 20.0% |
| !! | GAATCCTTATTATTATCATT+AGG | - | chr5_3:58734151-58734170 | Msa0821010:CDS | 20.0% |
| !!! | ATCATTAGGTTTATTTTTGT+TGG | - | chr5_3:58734165-58734184 | Msa0821010:CDS | 20.0% |
| !!! | TCATTAGGTTTATTTTTGTT+GGG | - | chr5_3:58734166-58734185 | Msa0821010:CDS | 20.0% |
| !!! | TATTTTGATTATATGGATGA+TGG | - | chr5_3:58734195-58734214 | Msa0821010:CDS | 20.0% |
| !!! | ATTTTGATTATATGGATGAT+GGG | - | chr5_3:58734196-58734215 | Msa0821010:CDS | 20.0% |
| !! | AAATCTTCTTTACCATAAAT+GGG | - | chr5_3:58734721-58734740 | Msa0821010:intron | 20.0% |
| !!! | CTATATTGTAATTTGTAAAC+AGG | - | chr5_3:58734896-58734915 | Msa0821010:intron | 20.0% |
| !! | ATTTAGTAAACACTCAATTA+TGG | + | chr5_3:58736161-58736180 | None:intergenic | 20.0% |
| !! | TAGCTCAATGTTTATTATTT+GGG | - | chr5_3:58736415-58736434 | Msa0821010:intron | 20.0% |
| !!! | GAAGAATATTTTTTCTTTTG+GGG | - | chr5_3:58736469-58736488 | Msa0821010:intron | 20.0% |
| !! | ATATAGAACAAATATAACCA+GGG | + | chr5_3:58736531-58736550 | None:intergenic | 20.0% |
| !! | TTGTACAAAATGTTGTTAAA+TGG | + | chr5_3:58737031-58737050 | None:intergenic | 20.0% |
| !!! | AAACCTTGTGGTTTTTTAAA+GGG | + | chr5_3:58733947-58733966 | None:intergenic | 25.0% |
| !!! | AAAACCTTGTGGTTTTTTAA+AGG | + | chr5_3:58733948-58733967 | None:intergenic | 25.0% |
| !!! | CATTAGGTTTATTTTTGTTG+GGG | - | chr5_3:58734167-58734186 | Msa0821010:CDS | 25.0% |
| !!! | GGTTGGTTATTTTGATTATA+TGG | - | chr5_3:58734188-58734207 | Msa0821010:CDS | 25.0% |
| ! | AGATAAAATAACTCTGTTGT+GGG | - | chr5_3:58734291-58734310 | Msa0821010:CDS | 25.0% |
| ! | TCAGCAAAACAATAACATTA+GGG | + | chr5_3:58734511-58734530 | None:intergenic | 25.0% |
| ! | ATCAGCAAAACAATAACATT+AGG | + | chr5_3:58734512-58734531 | None:intergenic | 25.0% |
| !!! | GGTGAAATAAGATTTGTTTT+TGG | - | chr5_3:58734575-58734594 | Msa0821010:CDS | 25.0% |
| ! | GAAATCTTCTTTACCATAAA+TGG | - | chr5_3:58734720-58734739 | Msa0821010:intron | 25.0% |
| ! | ATGATCAATGATATCAATAG+TGG | - | chr5_3:58734953-58734972 | Msa0821010:intron | 25.0% |
| !! | TATTTCACATAGCGTATTTT+TGG | + | chr5_3:58735000-58735019 | None:intergenic | 25.0% |
| ! | AAATGTTAAAAGGACAAAAC+TGG | + | chr5_3:58735059-58735078 | None:intergenic | 25.0% |
| !!! | TCTTTTCACCATTCATTTTT+TGG | - | chr5_3:58735104-58735123 | Msa0821010:CDS | 25.0% |
| ! | AATGAGTGAGAATTCAATAA+TGG | + | chr5_3:58735236-58735255 | None:intergenic | 25.0% |
| ! | TTGCATAATTGATTATTGAC+AGG | - | chr5_3:58735344-58735363 | Msa0821010:intron | 25.0% |
| !!! | ATTTTTTTGTACTGTGCTTT+TGG | - | chr5_3:58735486-58735505 | Msa0821010:intron | 25.0% |
| !!! | TTACAAATGAAAAGCATTCA+CGG | + | chr5_3:58735643-58735662 | None:intergenic | 25.0% |
| !! | TAGTTTATCTGTATTGCTTT+TGG | - | chr5_3:58735676-58735695 | Msa0821010:intron | 25.0% |
| ! | AATTGCATAAAATGTCTGTA+AGG | + | chr5_3:58735839-58735858 | None:intergenic | 25.0% |
| !! | TTGTGATTTTTGTCTTGTAT+TGG | + | chr5_3:58736031-58736050 | None:intergenic | 25.0% |
| ! | GTAAATTAAAGCAACAACAA+AGG | - | chr5_3:58736072-58736091 | Msa0821010:intron | 25.0% |
| ! | CACTCAATTATGGATAAAAT+TGG | + | chr5_3:58736151-58736170 | None:intergenic | 25.0% |
| ! | TCTATATAATTGTTAGAGAC+TGG | - | chr5_3:58736297-58736316 | Msa0821010:intron | 25.0% |
| ! | GTAGCTCAATGTTTATTATT+TGG | - | chr5_3:58736414-58736433 | Msa0821010:intron | 25.0% |
| ! | AGCTCAATGTTTATTATTTG+GGG | - | chr5_3:58736416-58736435 | Msa0821010:intron | 25.0% |
| ! | AAAAATATTCTTCAATCGGT+CGG | + | chr5_3:58736462-58736481 | None:intergenic | 25.0% |
| ! | TATAGAACAAATATAACCAG+GGG | + | chr5_3:58736530-58736549 | None:intergenic | 25.0% |
| ! | GATATAGAACAAATATAACC+AGG | + | chr5_3:58736532-58736551 | None:intergenic | 25.0% |
| !! | AATTACCATTTTACTTCTCT+TGG | + | chr5_3:58736840-58736859 | None:intergenic | 25.0% |
| ! | CAAAAAACAAATATGCAAAG+TGG | + | chr5_3:58736919-58736938 | None:intergenic | 25.0% |
| ! | CGGATTGAAAAAGAAAATAA+CGG | - | chr5_3:58736956-58736975 | Msa0821010:intron | 25.0% |
| !! | TTGTACAAAATCATGTTTTG+CGG | - | chr5_3:58737043-58737062 | Msa0821010:intron | 25.0% |
| ! | ATAAAAATACTGTCAGATAG+CGG | + | chr5_3:58737143-58737162 | None:intergenic | 25.0% |
| ! | TTTCGATTTAAATCTGAATC+CGG | - | chr5_3:58737627-58737646 | Msa0821010:intron | 25.0% |
| !!! | CATTTTTTCCATATCAGAAA+AGG | + | chr5_3:58737782-58737801 | None:intergenic | 25.0% |
| !! | CTTTTCTGATATGGAAAAAA+TGG | - | chr5_3:58737780-58737799 | Msa0821010:intron | 25.0% |
| !! | ATCAATCCTTTTACTTAAGT+TGG | + | chr5_3:58737827-58737846 | None:intergenic | 25.0% |
| ! | TAAAAGGATTGATGAAGATA+TGG | - | chr5_3:58737834-58737853 | Msa0821010:intron | 25.0% |
| ! | TTATGACTTCTCACATATAT+AGG | - | chr5_3:58737900-58737919 | Msa0821010:intron | 25.0% |
| !! | TAATCATTAGAAAGTTCTGA+TGG | - | chr5_3:58737924-58737943 | Msa0821010:CDS | 25.0% |
| !! | GGTTTAACTTCTTGTTGTTT+AGG | + | chr5_3:58733861-58733880 | None:intergenic | 30.0% |
| !!! | AACCTTGTGGTTTTTTAAAG+GGG | + | chr5_3:58733946-58733965 | None:intergenic | 30.0% |
| GACAAGAAAAAAAACCGAAA+GGG | + | chr5_3:58734060-58734079 | None:intergenic | 30.0% | |
| ! | AAAAACAACCTTTTCAACGA+GGG | + | chr5_3:58734082-58734101 | None:intergenic | 30.0% |
| ! | AAAAAACAACCTTTTCAACG+AGG | + | chr5_3:58734083-58734102 | None:intergenic | 30.0% |
| TACTTGCTTAATATTGATGC+CGG | - | chr5_3:58734268-58734287 | Msa0821010:CDS | 30.0% | |
| !! | CAACAGAGTTATTTTATCTC+CGG | + | chr5_3:58734290-58734309 | None:intergenic | 30.0% |
| GAGATAAAATAACTCTGTTG+TGG | - | chr5_3:58734290-58734309 | Msa0821010:CDS | 30.0% | |
| GATAAAATAACTCTGTTGTG+GGG | - | chr5_3:58734292-58734311 | Msa0821010:CDS | 30.0% | |
| ATAAAATAACTCTGTTGTGG+GGG | - | chr5_3:58734293-58734312 | Msa0821010:CDS | 30.0% | |
| AACATTAGGGTACATAGTAA+GGG | + | chr5_3:58734498-58734517 | None:intergenic | 30.0% | |
| TAACATTAGGGTACATAGTA+AGG | + | chr5_3:58734499-58734518 | None:intergenic | 30.0% | |
| ! | ATGCTCATAGATATCGTTTT+GGG | - | chr5_3:58734554-58734573 | Msa0821010:CDS | 30.0% |
| AACTGTACTACACAATTTGT+CGG | + | chr5_3:58734665-58734684 | None:intergenic | 30.0% | |
| CAAATTGTGTAGTACAGTTA+CGG | - | chr5_3:58734666-58734685 | Msa0821010:intron | 30.0% | |
| GGTAAAGAAGATTTCATGAT+TGG | + | chr5_3:58734715-58734734 | None:intergenic | 30.0% | |
| TGCATTTACATGTCTTTGTT+TGG | - | chr5_3:58734767-58734786 | Msa0821010:intron | 30.0% | |
| AAGCATATAGGTACTTCATA+AGG | + | chr5_3:58734806-58734825 | None:intergenic | 30.0% | |
| ! | ATGAAGTACCTATATGCTTT+CGG | - | chr5_3:58734807-58734826 | Msa0821010:intron | 30.0% |
| ! | AATTGAAACCGAAAGCATAT+AGG | + | chr5_3:58734818-58734837 | None:intergenic | 30.0% |
| ATAGAAAACATGACCAAAAG+CGG | + | chr5_3:58734880-58734899 | None:intergenic | 30.0% | |
| AACAGATGCCAAAAAATGAA+TGG | + | chr5_3:58735115-58735134 | None:intergenic | 30.0% | |
| CATCTGTTAGAAATCTGTTT+GGG | - | chr5_3:58735127-58735146 | Msa0821010:CDS | 30.0% | |
| CAAGAAGATAAACAGTCATT+TGG | + | chr5_3:58735267-58735286 | None:intergenic | 30.0% | |
| TAATTGATTATTGACAGGCT+AGG | - | chr5_3:58735349-58735368 | Msa0821010:intron | 30.0% | |
| AAACAAGGACTAATTTCACA+AGG | - | chr5_3:58735917-58735936 | Msa0821010:intron | 30.0% | |
| AAGTTCAGTTGTCGAAAATT+AGG | + | chr5_3:58736387-58736406 | None:intergenic | 30.0% | |
| TTGTTCTATATCCTCTTTCT+TGG | - | chr5_3:58736540-58736559 | Msa0821010:CDS | 30.0% | |
| AAAAGCTTTACATGTCTTCT+TGG | - | chr5_3:58736567-58736586 | Msa0821010:CDS | 30.0% | |
| !!! | TTTCTTTTTCAATCCGTGAT+AGG | + | chr5_3:58736952-58736971 | None:intergenic | 30.0% |
| ! | TCCACTATATTATAGCTCTA+TGG | - | chr5_3:58737088-58737107 | Msa0821010:intron | 30.0% |
| ! | AGCTATAACATAGTGGAATA+TGG | + | chr5_3:58737114-58737133 | None:intergenic | 30.0% |
| ! | AATGGCTTTTCTGCAATTTA+TGG | - | chr5_3:58737227-58737246 | Msa0821010:intron | 30.0% |
| !!! | CAGTTGATAGCTATTTTACT+CGG | + | chr5_3:58737291-58737310 | None:intergenic | 30.0% |
| !! | AACTGATTTTGAAGATGAAC+CGG | + | chr5_3:58737701-58737720 | None:intergenic | 30.0% |
| AATTTCAGAAGAGAAGATTG+AGG | - | chr5_3:58737741-58737760 | Msa0821010:intron | 30.0% | |
| AACTAGCCAACTTAAGTAAA+AGG | - | chr5_3:58737818-58737837 | Msa0821010:intron | 30.0% | |
| AGTGTTAGACAAATCCTTAT+TGG | - | chr5_3:58737981-58738000 | Msa0821010:five_prime_UTR | 30.0% | |
| ! | TAGACAAATCCTTATTGGTT+AGG | - | chr5_3:58737986-58738005 | Msa0821010:five_prime_UTR | 30.0% |
| !! | CTTCTTGTTGTTTAGGAGTT+TGG | + | chr5_3:58733854-58733873 | None:intergenic | 35.0% |
| ! | TTCCCCTTTAAAAAACCACA+AGG | - | chr5_3:58733941-58733960 | Msa0821010:three_prime_UTR | 35.0% |
| TGTTGTTGTGAAGAAGAAGA+TGG | + | chr5_3:58733978-58733997 | None:intergenic | 35.0% | |
| TTCTTCACAACAACAACATG+AGG | - | chr5_3:58733983-58734002 | Msa0821010:three_prime_UTR | 35.0% | |
| AAAAACCGAAAGGGTAAACA+AGG | + | chr5_3:58734051-58734070 | None:intergenic | 35.0% | |
| GGACAAGAAAAAAAACCGAA+AGG | + | chr5_3:58734061-58734080 | None:intergenic | 35.0% | |
| !!! | AGGTTTATTTTTGTTGGGGT+TGG | - | chr5_3:58734171-58734190 | Msa0821010:CDS | 35.0% |
| TAAAATAACTCTGTTGTGGG+GGG | - | chr5_3:58734294-58734313 | Msa0821010:CDS | 35.0% | |
| !! | CTATTTCGTACAAAGTGTTG+AGG | - | chr5_3:58734422-58734441 | Msa0821010:CDS | 35.0% |
| TGTATGCAACTTGGGTTTAA+GGG | - | chr5_3:58734452-58734471 | Msa0821010:CDS | 35.0% | |
| ! | GTTTAAGGGGTAGTAGTTTT+TGG | - | chr5_3:58734466-58734485 | Msa0821010:CDS | 35.0% |
| ! | CATGCTCATAGATATCGTTT+TGG | - | chr5_3:58734553-58734572 | Msa0821010:CDS | 35.0% |
| ACTAAGCAAATGCCCATTTA+TGG | + | chr5_3:58734736-58734755 | None:intergenic | 35.0% | |
| TCGGTTTCAATTACCAATAG+CGG | - | chr5_3:58734826-58734845 | Msa0821010:intron | 35.0% | |
| ATGATACGTTGTCATAGCTT+TGG | - | chr5_3:58734852-58734871 | Msa0821010:intron | 35.0% | |
| !! | TAGTGGATTGCAGAAAATAG+CGG | - | chr5_3:58734970-58734989 | Msa0821010:intron | 35.0% |
| GCATCTGTTAGAAATCTGTT+TGG | - | chr5_3:58735126-58735145 | Msa0821010:CDS | 35.0% | |
| TAGAAATCTGTTTGGGAACA+TGG | - | chr5_3:58735134-58735153 | Msa0821010:CDS | 35.0% | |
| GACACAATCAAATTGCTAGT+TGG | + | chr5_3:58735193-58735212 | None:intergenic | 35.0% | |
| ATTGAATTCTCACTCATTGC+AGG | - | chr5_3:58735238-58735257 | Msa0821010:intron | 35.0% | |
| ATGCAAGCTGATGAAGATAT+AGG | - | chr5_3:58735384-58735403 | Msa0821010:intron | 35.0% | |
| TGCAAGCTGATGAAGATATA+GGG | - | chr5_3:58735385-58735404 | Msa0821010:intron | 35.0% | |
| AGATATAGGGAAGATTGCAT+TGG | - | chr5_3:58735398-58735417 | Msa0821010:intron | 35.0% | |
| GACTACTTACAAACTAGAAG+AGG | + | chr5_3:58735429-58735448 | None:intergenic | 35.0% | |
| GAACATACGAGATAACACTT+AGG | - | chr5_3:58735604-58735623 | Msa0821010:intron | 35.0% | |
| ATACGAGATAACACTTAGGA+GGG | - | chr5_3:58735608-58735627 | Msa0821010:intron | 35.0% | |
| TTGGACCATGTTATATTCAG+CGG | - | chr5_3:58735695-58735714 | Msa0821010:intron | 35.0% | |
| ! | AGCTAGCAAAATTTTTACGC+AGG | - | chr5_3:58735721-58735740 | Msa0821010:intron | 35.0% |
| ! | GCTAGCAAAATTTTTACGCA+GGG | - | chr5_3:58735722-58735741 | Msa0821010:intron | 35.0% |
| ! | CTAGCAAAATTTTTACGCAG+GGG | - | chr5_3:58735723-58735742 | Msa0821010:intron | 35.0% |
| ! | TTTCGACAACTGAACTTGTT+TGG | - | chr5_3:58736390-58736409 | Msa0821010:intron | 35.0% |
| ! | TTCGACAACTGAACTTGTTT+GGG | - | chr5_3:58736391-58736410 | Msa0821010:intron | 35.0% |
| ! | TGTTTATTATTTGGGGTAGC+CGG | - | chr5_3:58736423-58736442 | Msa0821010:intron | 35.0% |
| !! | GGTCGGTATGTATTTTTATC+CGG | + | chr5_3:58736445-58736464 | None:intergenic | 35.0% |
| !!! | AGCTTTTAGAACCAAGAAAG+AGG | + | chr5_3:58736554-58736573 | None:intergenic | 35.0% |
| CAGGAATATTACTCAGCAAA+AGG | + | chr5_3:58736886-58736905 | None:intergenic | 35.0% | |
| GCCATAGAGCTATAATATAG+TGG | + | chr5_3:58737092-58737111 | None:intergenic | 35.0% | |
| GCTATAGAGCTATAACATAG+TGG | + | chr5_3:58737121-58737140 | None:intergenic | 35.0% | |
| TGATTATGGAAGTTCACTAC+TGG | - | chr5_3:58737192-58737211 | Msa0821010:intron | 35.0% | |
| ! | GATCTACAGTTTTACTTCCT+TGG | + | chr5_3:58737423-58737442 | None:intergenic | 35.0% |
| !! | TGTGAAGCATTGAAGCAAAA+CGG | - | chr5_3:58737478-58737497 | Msa0821010:intron | 35.0% |
| !!! | GGCTTACATTATTTTGAGTG+TGG | + | chr5_3:58737507-58737526 | None:intergenic | 35.0% |
| TTTAAATCTGAATCCGGATC+CGG | - | chr5_3:58737633-58737652 | Msa0821010:intron | 35.0% | |
| !! | ATTTTGAAGATGAACCGGAT+GGG | + | chr5_3:58737696-58737715 | None:intergenic | 35.0% |
| !! | CTTAAGTTGGCTAGTTGTAA+GGG | + | chr5_3:58737814-58737833 | None:intergenic | 35.0% |
| !! | ACTTAAGTTGGCTAGTTGTA+AGG | + | chr5_3:58737815-58737834 | None:intergenic | 35.0% |
| ! | ACAAATCCTTATTGGTTAGG+AGG | - | chr5_3:58737989-58738008 | Msa0821010:five_prime_UTR | 35.0% |
| TAGTCAGTACCTTCATTTAG+AGG | - | chr5_3:58738024-58738043 | Msa0821010:five_prime_UTR | 35.0% | |
| ATGGTGAAGACAAAACCTTG+TGG | + | chr5_3:58733959-58733978 | None:intergenic | 40.0% | |
| AAAGGGTAAACAAGGAAAGG+AGG | + | chr5_3:58734043-58734062 | None:intergenic | 40.0% | |
| ! | CCTTTCCTTGTTTACCCTTT+CGG | - | chr5_3:58734043-58734062 | Msa0821010:three_prime_UTR | 40.0% |
| TTTCTTGTCCCTCGTTGAAA+AGG | - | chr5_3:58734071-58734090 | Msa0821010:exon | 40.0% | |
| !! | TATGGATGATGGGTTTCTCT+TGG | - | chr5_3:58734206-58734225 | Msa0821010:CDS | 40.0% |
| AAAATAACTCTGTTGTGGGG+GGG | - | chr5_3:58734295-58734314 | Msa0821010:CDS | 40.0% | |
| !! | TTTCGTACAAAGTGTTGAGG+AGG | - | chr5_3:58734425-58734444 | Msa0821010:CDS | 40.0% |
| GTGTATGCAACTTGGGTTTA+AGG | - | chr5_3:58734451-58734470 | Msa0821010:CDS | 40.0% | |
| GTATGCAACTTGGGTTTAAG+GGG | - | chr5_3:58734453-58734472 | Msa0821010:CDS | 40.0% | |
| AACGTATCATATGCCGCTAT+TGG | + | chr5_3:58734842-58734861 | None:intergenic | 40.0% | |
| TGAAATAGCAGACAGTTTCG+CGG | - | chr5_3:58735013-58735032 | Msa0821010:intron | 40.0% | |
| CTTACAAACTAGAAGAGGCA+CGG | + | chr5_3:58735424-58735443 | None:intergenic | 40.0% | |
| CATACGAGATAACACTTAGG+AGG | - | chr5_3:58735607-58735626 | Msa0821010:intron | 40.0% | |
| TACGAGATAACACTTAGGAG+GGG | - | chr5_3:58735609-58735628 | Msa0821010:intron | 40.0% | |
| ! | TCGACAACTGAACTTGTTTG+GGG | - | chr5_3:58736392-58736411 | Msa0821010:intron | 40.0% |
| !!! | TTTTTCTTTTGGGGTAGCCA+AGG | - | chr5_3:58736478-58736497 | Msa0821010:intron | 40.0% |
| AGAACAAATATAACCAGGGG+CGG | + | chr5_3:58736527-58736546 | None:intergenic | 40.0% | |
| GTGAGCAAAGTTCCTGATTT+AGG | - | chr5_3:58736647-58736666 | Msa0821010:intron | 40.0% | |
| AGCAAAGTTCCTGATTTAGG+CGG | - | chr5_3:58736650-58736669 | Msa0821010:intron | 40.0% | |
| GGAGACCAAGAGAAGTAAAA+TGG | - | chr5_3:58736832-58736851 | Msa0821010:intron | 40.0% | |
| !! | TACTGGCTTGTGAATGCAAA+TGG | - | chr5_3:58737209-58737228 | Msa0821010:intron | 40.0% |
| TAATGTAAGCCCAGAAATCG+AGG | - | chr5_3:58737516-58737535 | Msa0821010:intron | 40.0% | |
| GCTTAACTTCCTCGATTTCT+GGG | + | chr5_3:58737528-58737547 | None:intergenic | 40.0% | |
| AGCTTAACTTCCTCGATTTC+TGG | + | chr5_3:58737529-58737548 | None:intergenic | 40.0% | |
| GAACAATGCTTAACTTCCTC+AGG | + | chr5_3:58737571-58737590 | None:intergenic | 40.0% | |
| ! | GGAAGTTAAGCATTGTTCAC+CGG | - | chr5_3:58737573-58737592 | Msa0821010:intron | 40.0% |
| !!! | ACTTCAGCTGGTTTTCTTAC+CGG | + | chr5_3:58737595-58737614 | None:intergenic | 40.0% |
| ATTTCATCCATGTCGTCATC+CGG | + | chr5_3:58737655-58737674 | None:intergenic | 40.0% | |
| !! | GATTTTGAAGATGAACCGGA+TGG | + | chr5_3:58737697-58737716 | None:intergenic | 40.0% |
| TATCAGAAAAGGACCATCCA+GGG | + | chr5_3:58737771-58737790 | None:intergenic | 40.0% | |
| ATATCAGAAAAGGACCATCC+AGG | + | chr5_3:58737772-58737791 | None:intergenic | 40.0% | |
| ! | TGGATGGTCCTTTTCTGATA+TGG | - | chr5_3:58737771-58737790 | Msa0821010:intron | 40.0% |
| TCAATGCCTCCTAACCAATA+AGG | + | chr5_3:58737998-58738017 | None:intergenic | 40.0% | |
| TCTACTGAGCCTCTAAATGA+AGG | + | chr5_3:58738036-58738055 | None:intergenic | 40.0% | |
| TTGAAGAAGACGAAGAGGGA+AGG | + | chr5_3:58733910-58733929 | None:intergenic | 45.0% | |
| GAAAGGAGGAACTTACAGCA+GGG | + | chr5_3:58734029-58734048 | None:intergenic | 45.0% | |
| CCGAAAGGGTAAACAAGGAA+AGG | + | chr5_3:58734046-58734065 | None:intergenic | 45.0% | |
| GTACAGTTACGGTTCCTGAT+CGG | - | chr5_3:58734677-58734696 | Msa0821010:intron | 45.0% | |
| GAAATAGCAGACAGTTTCGC+GGG | - | chr5_3:58735014-58735033 | Msa0821010:intron | 45.0% | |
| CTTCGCCGCTGAATATAACA+TGG | + | chr5_3:58735703-58735722 | None:intergenic | 45.0% | |
| ACAGAACTCGCGCAAGAAAT+AGG | + | chr5_3:58736743-58736762 | None:intergenic | 45.0% | |
| ATATGCAAAGTGGTGTGCAG+TGG | + | chr5_3:58736909-58736928 | None:intergenic | 45.0% | |
| TTGTGCAGTGTTGCCTATCA+CGG | - | chr5_3:58736936-58736955 | Msa0821010:intron | 45.0% | |
| TTCACCAGTCAAAGAACCTG+AGG | - | chr5_3:58737552-58737571 | Msa0821010:intron | 45.0% | |
| ACTTCCTCAGGTTCTTTGAC+TGG | + | chr5_3:58737559-58737578 | None:intergenic | 45.0% | |
| GGTAAGAAAACCAGCTGAAG+TGG | - | chr5_3:58737594-58737613 | Msa0821010:intron | 45.0% | |
| TTTCGAACTACCACTTCAGC+TGG | + | chr5_3:58737607-58737626 | None:intergenic | 45.0% | |
| GAGAAGATTGAGGAATACCC+TGG | - | chr5_3:58737751-58737770 | Msa0821010:intron | 45.0% | |
| AGATTGAGGAATACCCTGGA+TGG | - | chr5_3:58737755-58737774 | Msa0821010:intron | 45.0% | |
| CGCGTTGAAGAAGACGAAGA+GGG | + | chr5_3:58733914-58733933 | None:intergenic | 50.0% | |
| ACGCGTTGAAGAAGACGAAG+AGG | + | chr5_3:58733915-58733934 | None:intergenic | 50.0% | |
| GGAAAGGAGGAACTTACAGC+AGG | + | chr5_3:58734030-58734049 | None:intergenic | 50.0% | |
| GAGGTGCGTGTATGCAACTT+GGG | - | chr5_3:58734444-58734463 | Msa0821010:CDS | 50.0% | |
| !!! | CATAGCTTTGGCACCGCTTT+TGG | - | chr5_3:58734864-58734883 | Msa0821010:intron | 50.0% |
| GGCTGTCATGCTGTGTACTA+CGG | - | chr5_3:58734918-58734937 | Msa0821010:intron | 50.0% | |
| ATGCTGTGTACTACGGTACG+AGG | - | chr5_3:58734925-58734944 | Msa0821010:intron | 50.0% | |
| TGCTGTGTACTACGGTACGA+GGG | - | chr5_3:58734926-58734945 | Msa0821010:intron | 50.0% | |
| AGTTTCGCGGGCAATTGTGT+CGG | - | chr5_3:58735026-58735045 | Msa0821010:intron | 50.0% | |
| CGGTTCCTTTCATGTAGGAG+GGG | + | chr5_3:58736507-58736526 | None:intergenic | 50.0% | |
| GCGGTTCCTTTCATGTAGGA+GGG | + | chr5_3:58736508-58736527 | None:intergenic | 50.0% | |
| ACGACCAAGCTGTCACTAAG+AGG | - | chr5_3:58736690-58736709 | Msa0821010:intron | 50.0% | |
| ACCAAGCTGTCACTAAGAGG+AGG | - | chr5_3:58736693-58736712 | Msa0821010:intron | 50.0% | |
| ACCTCCTCTTAGTGACAGCT+TGG | + | chr5_3:58736697-58736716 | None:intergenic | 50.0% | |
| TGACGATGATGACAGCGATG+AGG | - | chr5_3:58736811-58736830 | Msa0821010:intron | 50.0% | |
| AACATGCGCATACCAGTGGA+AGG | - | chr5_3:58737362-58737381 | Msa0821010:intron | 50.0% | |
| ACATGCGCATACCAGTGGAA+GGG | - | chr5_3:58737363-58737382 | Msa0821010:intron | 50.0% | |
| ! | CAGTTTTACTTCCTTGGCCG+CGG | + | chr5_3:58737417-58737436 | None:intergenic | 50.0% |
| ACACCAACTCCTATCCCATC+CGG | - | chr5_3:58737679-58737698 | Msa0821010:intron | 50.0% | |
| GAAGATGAACCGGATGGGAT+AGG | + | chr5_3:58737691-58737710 | None:intergenic | 50.0% | |
| ! | CTCTGTTGTGGGGGGGTTTT+TGG | - | chr5_3:58734302-58734321 | Msa0821010:CDS | 55.0% |
| ! | GGAGGTGCGTGTATGCAACT+TGG | - | chr5_3:58734443-58734462 | Msa0821010:CDS | 55.0% |
| TCATGTAGGAGGGGTAGCCT+TGG | + | chr5_3:58736498-58736517 | None:intergenic | 55.0% | |
| GGCTACCCCTCCTACATGAA+AGG | - | chr5_3:58736499-58736518 | Msa0821010:intron | 55.0% | |
| GGCGGTTCCTTTCATGTAGG+AGG | + | chr5_3:58736509-58736528 | None:intergenic | 55.0% | |
| AGGGGCGGTTCCTTTCATGT+AGG | + | chr5_3:58736512-58736531 | None:intergenic | 55.0% | |
| TACATGAAAGGAACCGCCCC+TGG | - | chr5_3:58736511-58736530 | Msa0821010:intron | 55.0% | |
| GCAGCAGAACCGCCTAAATC+AGG | + | chr5_3:58736662-58736681 | None:intergenic | 55.0% | |
| TTAGGCGGTTCTGCTGCAAC+TGG | - | chr5_3:58736665-58736684 | Msa0821010:intron | 55.0% | |
| CTCGCGCAAGAAATAGGAGC+AGG | + | chr5_3:58736737-58736756 | None:intergenic | 55.0% | |
| CGAGAACATGCGCATACCAG+TGG | - | chr5_3:58737358-58737377 | Msa0821010:intron | 55.0% | |
| CATGCGCATACCAGTGGAAG+GGG | - | chr5_3:58737364-58737383 | Msa0821010:intron | 55.0% | |
| TCCATGTCGTCATCCGGATC+CGG | + | chr5_3:58737649-58737668 | None:intergenic | 55.0% | |
| !! | GGATGGGATAGGAGTTGGTG+TGG | + | chr5_3:58737680-58737699 | None:intergenic | 55.0% |
| GAACCGGATGGGATAGGAGT+TGG | + | chr5_3:58737685-58737704 | None:intergenic | 55.0% | |
| ! | GGATACGCAACGCACCGATC+AGG | + | chr5_3:58734694-58734713 | None:intergenic | 60.0% |
| GCAAAGTGGTGTGCAGTGGC+AGG | + | chr5_3:58736905-58736924 | None:intergenic | 60.0% | |
| CGCATGTTCTCGCTGTGCGA+AGG | + | chr5_3:58737350-58737369 | None:intergenic | 60.0% | |
| ATACCAGTGGAAGGGGCGGT+AGG | - | chr5_3:58737371-58737390 | Msa0821010:intron | 60.0% | |
| TACCAGTGGAAGGGGCGGTA+GGG | - | chr5_3:58737372-58737391 | Msa0821010:intron | 60.0% | |
| TCCGGATCCGGATGACGACA+TGG | - | chr5_3:58737645-58737664 | Msa0821010:intron | 60.0% | |
| GCGCATACCAGTGGAAGGGG+CGG | - | chr5_3:58737367-58737386 | Msa0821010:intron | 65.0% | |
| ACCAGTGGAAGGGGCGGTAG+GGG | - | chr5_3:58737373-58737392 | Msa0821010:intron | 65.0% | |
| ACCCCTACCGCCCCTTCCAC+TGG | + | chr5_3:58737377-58737396 | None:intergenic | 70.0% | |
| GGAAGGGGCGGTAGGGGTAG+AGG | - | chr5_3:58737379-58737398 | Msa0821010:intron | 70.0% | |
| GGGCGGTAGGGGTAGAGGCA+GGG | - | chr5_3:58737384-58737403 | Msa0821010:intron | 70.0% | |
| GGCGGTAGGGGTAGAGGCAG+GGG | - | chr5_3:58737385-58737404 | Msa0821010:intron | 70.0% | |
| AGGGGTAGAGGCAGGGGACG+TGG | - | chr5_3:58737391-58737410 | Msa0821010:intron | 70.0% | |
| GGGGCGGTAGGGGTAGAGGC+AGG | - | chr5_3:58737383-58737402 | Msa0821010:intron | 75.0% | |
| AGAGGCAGGGGACGTGGCCG+CGG | - | chr5_3:58737397-58737416 | Msa0821010:intron | 75.0% | |
| ! | AGGGGACGTGGCCGCGGCCA+AGG | - | chr5_3:58737403-58737422 | Msa0821010:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 58733851 | 58738103 | 58733851 | ID=Msa0821010;Name=Msa0821010 |
| chr5_3 | mRNA | 58733851 | 58738103 | 58733851 | ID=Msa0821010-mRNA-1;Parent=Msa0821010;Name=Msa0821010-mRNA-1;_AED=0.12;_eAED=0.12;_QI=149|0.75|0.8|1|0.75|0.8|5|224|252 |
| chr5_3 | exon | 58733851 | 58734596 | 58733851 | ID=Msa0821010-mRNA-1:exon:17887;Parent=Msa0821010-mRNA-1 |
| chr5_3 | exon | 58735101 | 58735158 | 58735101 | ID=Msa0821010-mRNA-1:exon:17886;Parent=Msa0821010-mRNA-1 |
| chr5_3 | exon | 58735240 | 58735312 | 58735240 | ID=Msa0821010-mRNA-1:exon:17885;Parent=Msa0821010-mRNA-1 |
| chr5_3 | exon | 58736516 | 58736588 | 58736516 | ID=Msa0821010-mRNA-1:exon:17884;Parent=Msa0821010-mRNA-1 |
| chr5_3 | exon | 58737922 | 58738103 | 58737922 | ID=Msa0821010-mRNA-1:exon:17883;Parent=Msa0821010-mRNA-1 |
| chr5_3 | five_prime_UTR | 58737955 | 58738103 | 58737955 | ID=Msa0821010-mRNA-1:five_prime_utr;Parent=Msa0821010-mRNA-1 |
| chr5_3 | CDS | 58737922 | 58737954 | 58737922 | ID=Msa0821010-mRNA-1:cds;Parent=Msa0821010-mRNA-1 |
| chr5_3 | CDS | 58736516 | 58736588 | 58736516 | ID=Msa0821010-mRNA-1:cds;Parent=Msa0821010-mRNA-1 |
| chr5_3 | CDS | 58735240 | 58735312 | 58735240 | ID=Msa0821010-mRNA-1:cds;Parent=Msa0821010-mRNA-1 |
| chr5_3 | CDS | 58735101 | 58735158 | 58735101 | ID=Msa0821010-mRNA-1:cds;Parent=Msa0821010-mRNA-1 |
| chr5_3 | CDS | 58734075 | 58734596 | 58734075 | ID=Msa0821010-mRNA-1:cds;Parent=Msa0821010-mRNA-1 |
| chr5_3 | three_prime_UTR | 58733851 | 58734074 | 58733851 | ID=Msa0821010-mRNA-1:three_prime_utr;Parent=Msa0821010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
