Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744700 | XP_013454332.1 | 91.753 | 291 | 18 | 3 | 1 | 286 | 1 | 290 | 5.54e-161 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744700 | sp|Q14919|NC2A_HUMAN | 41.463 | 164 | 70 | 3 | 2 | 165 | 5 | 142 | 7.29e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744700 | A0A072UGZ0 | 91.753 | 291 | 18 | 3 | 1 | 286 | 1 | 290 | 2.64e-161 | 460 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0744700 | TF | NF-YC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0744670 | Msa0744700 | 0.870758 | 1.145194e-66 | -8.615850e-47 |
| Msa0744700 | Msa0821010 | 0.923530 | 2.353133e-89 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744700 | MtrunA17_Chr5g0441241 | 91.241 | 274 | 18 | 3 | 18 | 286 | 1 | 273 | 8.85e-152 | 426 |
| Msa0744700 | MtrunA17_Chr3g0081161 | 49.329 | 298 | 122 | 9 | 1 | 287 | 1 | 280 | 2.09e-78 | 240 |
| Msa0744700 | MtrunA17_Chr8g0354151 | 44.337 | 309 | 135 | 6 | 1 | 287 | 1 | 294 | 9.97e-75 | 231 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0744700 | AT5G19490.1 | 44.000 | 300 | 124 | 8 | 1 | 297 | 1 | 259 | 4.62e-59 | 190 |
| Msa0744700 | AT3G12480.1 | 69.925 | 133 | 34 | 1 | 1 | 127 | 1 | 133 | 6.75e-59 | 190 |
Find 79 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTAACTTCCTCGATTTC+TGG | 0.151578 | 5_1:+65605801 | None:intergenic |
| CTTCTTGTTGTTTAGGAGTT+TGG | 0.239094 | 5_1:+65609475 | None:intergenic |
| AACTAGCCAACTTAAGTAAA+AGG | 0.241392 | 5_1:-65605509 | Msa0744700:CDS |
| GGTTTAACTTCTTGTTGTTT+AGG | 0.280960 | 5_1:+65609468 | None:intergenic |
| GTGAGCAAAGTTCCTGATTT+AGG | 0.300821 | 5_1:-65606681 | Msa0744700:CDS |
| TAGTCAGTACCTTCATTTAG+AGG | 0.303078 | 5_1:-65605303 | Msa0744700:three_prime_UTR |
| GGAAGGGGCGGTAGGGGTAG+AGG | 0.322327 | 5_1:-65605948 | Msa0744700:CDS |
| AGTGTTAGACAAATCCTTAT+TGG | 0.327540 | 5_1:-65605346 | Msa0744700:three_prime_UTR |
| ATGCAAGCTGATGAAGATAT+AGG | 0.348420 | 5_1:-65607943 | Msa0744700:CDS |
| TTATGACTTCTCACATATAT+AGG | 0.351806 | 5_1:-65605427 | Msa0744700:three_prime_UTR |
| GCTTAACTTCCTCGATTTCT+GGG | 0.371274 | 5_1:+65605802 | None:intergenic |
| ACTTAAGTTGGCTAGTTGTA+AGG | 0.372538 | 5_1:+65605515 | None:intergenic |
| GGAGACCAAGAGAAGTAAAA+TGG | 0.382690 | 5_1:-65606496 | Msa0744700:intron |
| AGGGGTAGAGGCAGGGGACG+TGG | 0.387631 | 5_1:-65605936 | Msa0744700:CDS |
| TAGACAAATCCTTATTGGTT+AGG | 0.392591 | 5_1:-65605341 | Msa0744700:three_prime_UTR |
| TCAATGCCTCCTAACCAATA+AGG | 0.394814 | 5_1:+65605332 | None:intergenic |
| TAAAAGGATTGATGAAGATA+TGG | 0.395167 | 5_1:-65605493 | Msa0744700:CDS |
| TTTCGATTTAAATCTGAATC+CGG | 0.397431 | 5_1:-65605700 | Msa0744700:CDS |
| GGGGCGGTAGGGGTAGAGGC+AGG | 0.398203 | 5_1:-65605944 | Msa0744700:CDS |
| GGCGGTAGGGGTAGAGGCAG+GGG | 0.408013 | 5_1:-65605942 | Msa0744700:CDS |
| TGCAAGCTGATGAAGATATA+GGG | 0.408049 | 5_1:-65607942 | Msa0744700:CDS |
| AGGGGACGTGGCCGCGGCCA+AGG | 0.424123 | 5_1:-65605924 | Msa0744700:CDS |
| AGAGGCAGGGGACGTGGCCG+CGG | 0.424913 | 5_1:-65605930 | Msa0744700:CDS |
| GCAGCAGAACCGCCTAAATC+AGG | 0.433277 | 5_1:+65606669 | None:intergenic |
| GAACAATGCTTAACTTCCTC+AGG | 0.444484 | 5_1:+65605759 | None:intergenic |
| TCCATGTCGTCATCCGGATC+CGG | 0.447116 | 5_1:+65605681 | None:intergenic |
| ACTTCCTCAGGTTCTTTGAC+TGG | 0.454445 | 5_1:+65605771 | None:intergenic |
| TTTCGAACTACCACTTCAGC+TGG | 0.460443 | 5_1:+65605723 | None:intergenic |
| TTAGGCGGTTCTGCTGCAAC+TGG | 0.479475 | 5_1:-65606663 | Msa0744700:CDS |
| CTTAAGTTGGCTAGTTGTAA+GGG | 0.481167 | 5_1:+65605516 | None:intergenic |
| ATTTCATCCATGTCGTCATC+CGG | 0.486479 | 5_1:+65605675 | None:intergenic |
| ACAAATCCTTATTGGTTAGG+AGG | 0.487491 | 5_1:-65605338 | Msa0744700:three_prime_UTR |
| ACCAGTGGAAGGGGCGGTAG+GGG | 0.488619 | 5_1:-65605954 | Msa0744700:CDS |
| TTACAAATGAAAAGCATTCA+CGG | 0.491312 | 5_1:+65607687 | None:intergenic |
| ATACCAGTGGAAGGGGCGGT+AGG | 0.493238 | 5_1:-65605956 | Msa0744700:CDS |
| TACCAGTGGAAGGGGCGGTA+GGG | 0.494206 | 5_1:-65605955 | Msa0744700:CDS |
| GAAGATGAACCGGATGGGAT+AGG | 0.503037 | 5_1:+65605639 | None:intergenic |
| ACCCCTACCGCCCCTTCCAC+TGG | 0.506809 | 5_1:+65605953 | None:intergenic |
| TTTAAATCTGAATCCGGATC+CGG | 0.510680 | 5_1:-65605694 | Msa0744700:CDS |
| GGGCGGTAGGGGTAGAGGCA+GGG | 0.517634 | 5_1:-65605943 | Msa0744700:CDS |
| CATGCGCATACCAGTGGAAG+GGG | 0.522977 | 5_1:-65605963 | Msa0744700:CDS |
| TCCGGATCCGGATGACGACA+TGG | 0.537250 | 5_1:-65605682 | Msa0744700:CDS |
| GACTACTTACAAACTAGAAG+AGG | 0.544073 | 5_1:+65607901 | None:intergenic |
| TGTGAAGCATTGAAGCAAAA+CGG | 0.548283 | 5_1:-65605849 | Msa0744700:CDS |
| ACCTCCTCTTAGTGACAGCT+TGG | 0.548550 | 5_1:+65606634 | None:intergenic |
| AATTTCAGAAGAGAAGATTG+AGG | 0.553548 | 5_1:-65605586 | Msa0744700:CDS |
| CATACGAGATAACACTTAGG+AGG | 0.553719 | 5_1:-65607720 | Msa0744700:CDS |
| TAATCATTAGAAAGTTCTGA+TGG | 0.554324 | 5_1:-65605403 | Msa0744700:three_prime_UTR |
| GAACCGGATGGGATAGGAGT+TGG | 0.555156 | 5_1:+65605645 | None:intergenic |
| GAGAAGATTGAGGAATACCC+TGG | 0.559641 | 5_1:-65605576 | Msa0744700:CDS |
| TCTACTGAGCCTCTAAATGA+AGG | 0.562344 | 5_1:+65605294 | None:intergenic |
| ATATCAGAAAAGGACCATCC+AGG | 0.563775 | 5_1:+65605558 | None:intergenic |
| GGAAGTTAAGCATTGTTCAC+CGG | 0.563902 | 5_1:-65605754 | Msa0744700:CDS |
| ACACCAACTCCTATCCCATC+CGG | 0.568917 | 5_1:-65605648 | Msa0744700:CDS |
| TTCTTCACAACAACAACATG+AGG | 0.578374 | 5_1:-65609343 | Msa0744700:exon |
| AACATGCGCATACCAGTGGA+AGG | 0.579451 | 5_1:-65605965 | Msa0744700:CDS |
| ACGACCAAGCTGTCACTAAG+AGG | 0.580960 | 5_1:-65606638 | Msa0744700:CDS |
| GGTAAGAAAACCAGCTGAAG+TGG | 0.584865 | 5_1:-65605733 | Msa0744700:CDS |
| TATCAGAAAAGGACCATCCA+GGG | 0.585690 | 5_1:+65605559 | None:intergenic |
| TTGAAGAAGACGAAGAGGGA+AGG | 0.589461 | 5_1:+65609419 | None:intergenic |
| ATACGAGATAACACTTAGGA+GGG | 0.600468 | 5_1:-65607719 | Msa0744700:CDS |
| AGATATAGGGAAGATTGCAT+TGG | 0.616410 | 5_1:-65607929 | Msa0744700:CDS |
| TAATGTAAGCCCAGAAATCG+AGG | 0.616586 | 5_1:-65605811 | Msa0744700:CDS |
| TGTTGTTGTGAAGAAGAAGA+TGG | 0.620292 | 5_1:+65609351 | None:intergenic |
| AGCAAAGTTCCTGATTTAGG+CGG | 0.623500 | 5_1:-65606678 | Msa0744700:CDS |
| ACGCGTTGAAGAAGACGAAG+AGG | 0.626457 | 5_1:+65609414 | None:intergenic |
| CGAGAACATGCGCATACCAG+TGG | 0.633781 | 5_1:-65605969 | Msa0744700:CDS |
| GGATGGGATAGGAGTTGGTG+TGG | 0.637023 | 5_1:+65605650 | None:intergenic |
| GCGCATACCAGTGGAAGGGG+CGG | 0.637896 | 5_1:-65605960 | Msa0744700:CDS |
| GAACATACGAGATAACACTT+AGG | 0.637954 | 5_1:-65607723 | Msa0744700:CDS |
| ACATGCGCATACCAGTGGAA+GGG | 0.649450 | 5_1:-65605964 | Msa0744700:CDS |
| CGCGTTGAAGAAGACGAAGA+GGG | 0.650949 | 5_1:+65609415 | None:intergenic |
| AGATTGAGGAATACCCTGGA+TGG | 0.653139 | 5_1:-65605572 | Msa0744700:CDS |
| TTCACCAGTCAAAGAACCTG+AGG | 0.656260 | 5_1:-65605775 | Msa0744700:CDS |
| CTTACAAACTAGAAGAGGCA+CGG | 0.671946 | 5_1:+65607906 | None:intergenic |
| TACGAGATAACACTTAGGAG+GGG | 0.675136 | 5_1:-65607718 | Msa0744700:CDS |
| ACCAAGCTGTCACTAAGAGG+AGG | 0.677608 | 5_1:-65606635 | Msa0744700:intron |
| TGACGATGATGACAGCGATG+AGG | 0.685240 | 5_1:-65606517 | Msa0744700:CDS |
| ATGGTGAAGACAAAACCTTG+TGG | 0.755545 | 5_1:+65609370 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTAAAAAAAAATGTTAAA+AGG | + | chr5_1:65606463-65606482 | None:intergenic | 10.0% |
| !!! | TAAATTTTTTTCTTTATAGT+TGG | + | chr5_1:65607143-65607162 | None:intergenic | 10.0% |
| !! | TATCTTTAAATTTAATATGT+TGG | + | chr5_1:65607169-65607188 | None:intergenic | 10.0% |
| !! | ATTTCACAAAAAAAAAAAAT+CGG | - | chr5_1:65607271-65607290 | Msa0744700:intron | 10.0% |
| !! | AAATTTAACAAAATTAAACA+AGG | - | chr5_1:65607295-65607314 | Msa0744700:intron | 10.0% |
| !! | ATTGATATATTTATTTATGT+TGG | + | chr5_1:65607726-65607745 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAATCAGT+TGG | + | chr5_1:65608659-65608678 | None:intergenic | 10.0% |
| !!! | TTTAGATTTTGTAAAGATTT+TGG | + | chr5_1:65605282-65605301 | None:intergenic | 15.0% |
| !!! | TTTTTCTGTTTTTGTTTTAT+TGG | - | chr5_1:65605515-65605534 | Msa0744700:CDS | 15.0% |
| !!! | TTTTCTGTTTTTGTTTTATT+GGG | - | chr5_1:65605516-65605535 | Msa0744700:CDS | 15.0% |
| !! | TAAACCTAATGATAATAATA+AGG | + | chr5_1:65605553-65605572 | None:intergenic | 15.0% |
| !! | TCCTTTATTAAAATTTGATA+TGG | - | chr5_1:65606006-65606025 | Msa0744700:intron | 15.0% |
| !!! | ACCATATCAAATTTTAATAA+AGG | + | chr5_1:65606010-65606029 | None:intergenic | 15.0% |
| !!! | TATATTGTAATTTGTAAACA+GGG | - | chr5_1:65606291-65606310 | Msa0744700:intron | 15.0% |
| !! | GTTTCAAAAAACAAAAAATA+GGG | + | chr5_1:65606857-65606876 | None:intergenic | 15.0% |
| !! | TGTTTCAAAAAACAAAAAAT+AGG | + | chr5_1:65606858-65606877 | None:intergenic | 15.0% |
| !!! | TTACAGATTAAATTTCTTTT+CGG | + | chr5_1:65607396-65607415 | None:intergenic | 15.0% |
| !! | ATAGTCATAAACAAATTAAA+TGG | + | chr5_1:65607638-65607657 | None:intergenic | 15.0% |
| !! | AAGAAAAAATATTCTTCAAT+CGG | + | chr5_1:65607859-65607878 | None:intergenic | 15.0% |
| !!! | TTGAAGAATATTTTTTCTTT+TGG | - | chr5_1:65607860-65607879 | Msa0744700:intron | 15.0% |
| !!! | TGAAGAATATTTTTTCTTTT+GGG | - | chr5_1:65607861-65607880 | Msa0744700:intron | 15.0% |
| !!! | TGATTTGTATTTTGTATATT+AGG | - | chr5_1:65608167-65608186 | Msa0744700:intron | 15.0% |
| !!! | AATCACTTAAATCAATTTTT+TGG | + | chr5_1:65608570-65608589 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTAAGTGATTA+TGG | - | chr5_1:65608571-65608590 | Msa0744700:intron | 15.0% |
| !!! | ACAATTAGAAAAGATTTTTT+AGG | - | chr5_1:65609341-65609360 | Msa0744700:exon | 15.0% |
| !!! | ATTTTGTAAAGATTTTGGTT+TGG | + | chr5_1:65605277-65605296 | None:intergenic | 20.0% |
| !! | GAATCCTTATTATTATCATT+AGG | - | chr5_1:65605546-65605565 | Msa0744700:CDS | 20.0% |
| !!! | ATCATTAGGTTTATTTTTGT+TGG | - | chr5_1:65605560-65605579 | Msa0744700:CDS | 20.0% |
| !!! | TCATTAGGTTTATTTTTGTT+GGG | - | chr5_1:65605561-65605580 | Msa0744700:CDS | 20.0% |
| !!! | TATTTTGATTATATGGATGA+TGG | - | chr5_1:65605590-65605609 | Msa0744700:CDS | 20.0% |
| !!! | ATTTTGATTATATGGATGAT+GGG | - | chr5_1:65605591-65605610 | Msa0744700:CDS | 20.0% |
| !! | AAATCTTCTTTACCATAAAT+GGG | - | chr5_1:65606115-65606134 | Msa0744700:intron | 20.0% |
| !!! | CTATATTGTAATTTGTAAAC+AGG | - | chr5_1:65606290-65606309 | Msa0744700:intron | 20.0% |
| !! | ATTTAGTAAACACTCAATTA+TGG | + | chr5_1:65607554-65607573 | None:intergenic | 20.0% |
| !!! | ATTTTTCAATGTCAACTAAT+AGG | - | chr5_1:65607587-65607606 | Msa0744700:intron | 20.0% |
| !! | TAGCTCAATGTTTATTATTT+GGG | - | chr5_1:65607808-65607827 | Msa0744700:intron | 20.0% |
| !!! | GAAGAATATTTTTTCTTTTG+GGG | - | chr5_1:65607862-65607881 | Msa0744700:intron | 20.0% |
| !! | ATATAGAACAAATATAACCA+GGG | + | chr5_1:65607924-65607943 | None:intergenic | 20.0% |
| !! | TTGTACAAAATGTTGTTAAA+TGG | + | chr5_1:65608424-65608443 | None:intergenic | 20.0% |
| !!! | AAACCTTGTGGTTTTTTAAA+GGG | + | chr5_1:65605342-65605361 | None:intergenic | 25.0% |
| !!! | AAAACCTTGTGGTTTTTTAA+AGG | + | chr5_1:65605343-65605362 | None:intergenic | 25.0% |
| !!! | CATTAGGTTTATTTTTGTTG+GGG | - | chr5_1:65605562-65605581 | Msa0744700:CDS | 25.0% |
| !!! | GGTTGGTTATTTTGATTATA+TGG | - | chr5_1:65605583-65605602 | Msa0744700:CDS | 25.0% |
| ! | AGATAAAATAACTCTGTTGT+GGG | - | chr5_1:65605686-65605705 | Msa0744700:CDS | 25.0% |
| ! | TCAGCAAAACAATAACATTA+GGG | + | chr5_1:65605905-65605924 | None:intergenic | 25.0% |
| ! | ATCAGCAAAACAATAACATT+AGG | + | chr5_1:65605906-65605925 | None:intergenic | 25.0% |
| !!! | GGTGAAATAAGATTTGTTTT+TGG | - | chr5_1:65605969-65605988 | Msa0744700:CDS | 25.0% |
| ! | GAAATCTTCTTTACCATAAA+TGG | - | chr5_1:65606114-65606133 | Msa0744700:intron | 25.0% |
| ! | ATGATCAATGATATCAATAG+TGG | - | chr5_1:65606347-65606366 | Msa0744700:intron | 25.0% |
| !! | TATTTCACATAGCGTATTTT+TGG | + | chr5_1:65606394-65606413 | None:intergenic | 25.0% |
| ! | AAATGTTAAAAGGACAAAAC+TGG | + | chr5_1:65606453-65606472 | None:intergenic | 25.0% |
| !!! | TCTTTTCACCATTCATTTTT+TGG | - | chr5_1:65606498-65606517 | Msa0744700:CDS | 25.0% |
| ! | AATGAGTGAGAATTCAATAA+TGG | + | chr5_1:65606630-65606649 | None:intergenic | 25.0% |
| ! | TTGCATAATTGATTATTGAC+AGG | - | chr5_1:65606738-65606757 | Msa0744700:intron | 25.0% |
| !!! | ATTTTTTTGTACTGTGCTTT+TGG | - | chr5_1:65606880-65606899 | Msa0744700:intron | 25.0% |
| !!! | TTACAAATGAAAAGCATTCA+CGG | + | chr5_1:65607037-65607056 | None:intergenic | 25.0% |
| !! | TAGTTTATCTGTATTGCTTT+TGG | - | chr5_1:65607070-65607089 | Msa0744700:intron | 25.0% |
| ! | AATTGCATAAAATGTCTGTA+AGG | + | chr5_1:65607233-65607252 | None:intergenic | 25.0% |
| !! | TTGTGATTTTTGTCTTGTAT+TGG | + | chr5_1:65607424-65607443 | None:intergenic | 25.0% |
| ! | GTAAATTAAAGCAACAACAA+AGG | - | chr5_1:65607465-65607484 | Msa0744700:intron | 25.0% |
| ! | CACTCAATTATGGATAAAAT+TGG | + | chr5_1:65607544-65607563 | None:intergenic | 25.0% |
| ! | TCTATATAATTGTTAGAGAC+TGG | - | chr5_1:65607690-65607709 | Msa0744700:intron | 25.0% |
| ! | GTAGCTCAATGTTTATTATT+TGG | - | chr5_1:65607807-65607826 | Msa0744700:intron | 25.0% |
| ! | AGCTCAATGTTTATTATTTG+GGG | - | chr5_1:65607809-65607828 | Msa0744700:intron | 25.0% |
| ! | AAAAATATTCTTCAATCGGT+CGG | + | chr5_1:65607855-65607874 | None:intergenic | 25.0% |
| ! | TATAGAACAAATATAACCAG+GGG | + | chr5_1:65607923-65607942 | None:intergenic | 25.0% |
| ! | GATATAGAACAAATATAACC+AGG | + | chr5_1:65607925-65607944 | None:intergenic | 25.0% |
| !! | AATTACCATTTTACTTCTCT+TGG | + | chr5_1:65608233-65608252 | None:intergenic | 25.0% |
| ! | CAAAAAACAAATATGCAAAG+TGG | + | chr5_1:65608312-65608331 | None:intergenic | 25.0% |
| ! | CGGATTGAAAAAGAAAATAA+CGG | - | chr5_1:65608349-65608368 | Msa0744700:intron | 25.0% |
| !! | TTGTACAAAATCATGTTTTG+CGG | - | chr5_1:65608436-65608455 | Msa0744700:intron | 25.0% |
| ! | ATAAAAATACTGTCAGATAG+CGG | + | chr5_1:65608536-65608555 | None:intergenic | 25.0% |
| ! | TTTCGATTTAAATCTGAATC+CGG | - | chr5_1:65609021-65609040 | Msa0744700:intron | 25.0% |
| !!! | CATTTTTTCCATATCAGAAA+AGG | + | chr5_1:65609176-65609195 | None:intergenic | 25.0% |
| !! | CTTTTCTGATATGGAAAAAA+TGG | - | chr5_1:65609174-65609193 | Msa0744700:intron | 25.0% |
| !! | ATCAATCCTTTTACTTAAGT+TGG | + | chr5_1:65609221-65609240 | None:intergenic | 25.0% |
| ! | TAAAAGGATTGATGAAGATA+TGG | - | chr5_1:65609228-65609247 | Msa0744700:intron | 25.0% |
| ! | TTATGACTTCTCACATATAT+AGG | - | chr5_1:65609294-65609313 | Msa0744700:intron | 25.0% |
| !! | TAATCATTAGAAAGTTCTGA+TGG | - | chr5_1:65609318-65609337 | Msa0744700:CDS | 25.0% |
| !! | GGTTTAACTTCTTGTTGTTT+AGG | + | chr5_1:65605256-65605275 | None:intergenic | 30.0% |
| !!! | AACCTTGTGGTTTTTTAAAG+GGG | + | chr5_1:65605341-65605360 | None:intergenic | 30.0% |
| GACAAGAAAAAAAACCGAAA+GGG | + | chr5_1:65605455-65605474 | None:intergenic | 30.0% | |
| ! | AAAAACAACCTTTTCAACGA+GGG | + | chr5_1:65605477-65605496 | None:intergenic | 30.0% |
| ! | AAAAAACAACCTTTTCAACG+AGG | + | chr5_1:65605478-65605497 | None:intergenic | 30.0% |
| TACTTGCTTAATATTGATGC+CGG | - | chr5_1:65605663-65605682 | Msa0744700:CDS | 30.0% | |
| !! | CAACAGAGTTATTTTATCTC+CGG | + | chr5_1:65605685-65605704 | None:intergenic | 30.0% |
| GAGATAAAATAACTCTGTTG+TGG | - | chr5_1:65605685-65605704 | Msa0744700:CDS | 30.0% | |
| GATAAAATAACTCTGTTGTG+GGG | - | chr5_1:65605687-65605706 | Msa0744700:CDS | 30.0% | |
| ATAAAATAACTCTGTTGTGG+GGG | - | chr5_1:65605688-65605707 | Msa0744700:CDS | 30.0% | |
| AACATTAGGGTACATAGTAA+GGG | + | chr5_1:65605892-65605911 | None:intergenic | 30.0% | |
| TAACATTAGGGTACATAGTA+AGG | + | chr5_1:65605893-65605912 | None:intergenic | 30.0% | |
| ! | ATGCTCATAGATATCGTTTT+GGG | - | chr5_1:65605948-65605967 | Msa0744700:CDS | 30.0% |
| AACTGTACTACACAATTTGT+CGG | + | chr5_1:65606059-65606078 | None:intergenic | 30.0% | |
| CAAATTGTGTAGTACAGTTA+CGG | - | chr5_1:65606060-65606079 | Msa0744700:intron | 30.0% | |
| GGTAAAGAAGATTTCATGAT+TGG | + | chr5_1:65606109-65606128 | None:intergenic | 30.0% | |
| TGCATTTACATGTCTTTGTT+TGG | - | chr5_1:65606161-65606180 | Msa0744700:intron | 30.0% | |
| AAGCATATAGGTACTTCATA+AGG | + | chr5_1:65606200-65606219 | None:intergenic | 30.0% | |
| ! | ATGAAGTACCTATATGCTTT+CGG | - | chr5_1:65606201-65606220 | Msa0744700:intron | 30.0% |
| ! | AATTGAAACCGAAAGCATAT+AGG | + | chr5_1:65606212-65606231 | None:intergenic | 30.0% |
| ATAGAAAACATGACCAAAAG+CGG | + | chr5_1:65606274-65606293 | None:intergenic | 30.0% | |
| AACAGATGCCAAAAAATGAA+TGG | + | chr5_1:65606509-65606528 | None:intergenic | 30.0% | |
| CATCTGTTAGAAATCTGTTT+GGG | - | chr5_1:65606521-65606540 | Msa0744700:CDS | 30.0% | |
| CAAGAAGATAAACAGTCATT+TGG | + | chr5_1:65606661-65606680 | None:intergenic | 30.0% | |
| TAATTGATTATTGACAGGCT+AGG | - | chr5_1:65606743-65606762 | Msa0744700:intron | 30.0% | |
| AAACAAGGACTAATTTCACA+AGG | - | chr5_1:65607310-65607329 | Msa0744700:intron | 30.0% | |
| AAGTTCAGTTGTCGAAAATT+AGG | + | chr5_1:65607780-65607799 | None:intergenic | 30.0% | |
| TTGTTCTATATCCTCTTTCT+TGG | - | chr5_1:65607933-65607952 | Msa0744700:CDS | 30.0% | |
| AAAAGCTTTACATGTCTTCT+TGG | - | chr5_1:65607960-65607979 | Msa0744700:CDS | 30.0% | |
| !!! | TTTCTTTTTCAATCCGTGAT+AGG | + | chr5_1:65608345-65608364 | None:intergenic | 30.0% |
| ! | TCCACTATATTATAGCTCTA+TGG | - | chr5_1:65608481-65608500 | Msa0744700:intron | 30.0% |
| ! | AGCTATAACATAGTGGAATA+TGG | + | chr5_1:65608507-65608526 | None:intergenic | 30.0% |
| ! | AATGGCTTTTCTGCAATTTA+TGG | - | chr5_1:65608620-65608639 | Msa0744700:intron | 30.0% |
| !!! | CAGTTGATAGCTATTTTACT+CGG | + | chr5_1:65608685-65608704 | None:intergenic | 30.0% |
| !! | AACTGATTTTGAAGATGAAC+CGG | + | chr5_1:65609095-65609114 | None:intergenic | 30.0% |
| AATTTCAGAAGAGAAGATTG+AGG | - | chr5_1:65609135-65609154 | Msa0744700:intron | 30.0% | |
| AACTAGCCAACTTAAGTAAA+AGG | - | chr5_1:65609212-65609231 | Msa0744700:intron | 30.0% | |
| AGTGTTAGACAAATCCTTAT+TGG | - | chr5_1:65609375-65609394 | Msa0744700:five_prime_UTR | 30.0% | |
| ! | TAGACAAATCCTTATTGGTT+AGG | - | chr5_1:65609380-65609399 | Msa0744700:five_prime_UTR | 30.0% |
| !! | CTTCTTGTTGTTTAGGAGTT+TGG | + | chr5_1:65605249-65605268 | None:intergenic | 35.0% |
| ! | TTCCCCTTTAAAAAACCACA+AGG | - | chr5_1:65605336-65605355 | Msa0744700:three_prime_UTR | 35.0% |
| TGTTGTTGTGAAGAAGAAGA+TGG | + | chr5_1:65605373-65605392 | None:intergenic | 35.0% | |
| TTCTTCACAACAACAACATG+AGG | - | chr5_1:65605378-65605397 | Msa0744700:three_prime_UTR | 35.0% | |
| AAAAACCGAAAGGGTAAACA+AGG | + | chr5_1:65605446-65605465 | None:intergenic | 35.0% | |
| GGACAAGAAAAAAAACCGAA+AGG | + | chr5_1:65605456-65605475 | None:intergenic | 35.0% | |
| !!! | AGGTTTATTTTTGTTGGGGT+TGG | - | chr5_1:65605566-65605585 | Msa0744700:CDS | 35.0% |
| TAAAATAACTCTGTTGTGGG+GGG | - | chr5_1:65605689-65605708 | Msa0744700:CDS | 35.0% | |
| !! | CTATTTCGTACAAAGTGTTG+AGG | - | chr5_1:65605816-65605835 | Msa0744700:CDS | 35.0% |
| TGTATGCAACTTGGGTTTAA+GGG | - | chr5_1:65605846-65605865 | Msa0744700:CDS | 35.0% | |
| ! | GTTTAAGGGGTAGTAGTTTT+TGG | - | chr5_1:65605860-65605879 | Msa0744700:CDS | 35.0% |
| ! | CATGCTCATAGATATCGTTT+TGG | - | chr5_1:65605947-65605966 | Msa0744700:CDS | 35.0% |
| ACTAAGCAAATGCCCATTTA+TGG | + | chr5_1:65606130-65606149 | None:intergenic | 35.0% | |
| TCGGTTTCAATTACCAATAG+CGG | - | chr5_1:65606220-65606239 | Msa0744700:intron | 35.0% | |
| ATGATACGTTGTCATAGGTT+TGG | - | chr5_1:65606246-65606265 | Msa0744700:intron | 35.0% | |
| !! | TAGTGGATTGCAGAAAATAG+CGG | - | chr5_1:65606364-65606383 | Msa0744700:intron | 35.0% |
| GCATCTGTTAGAAATCTGTT+TGG | - | chr5_1:65606520-65606539 | Msa0744700:CDS | 35.0% | |
| TAGAAATCTGTTTGGGAACA+TGG | - | chr5_1:65606528-65606547 | Msa0744700:CDS | 35.0% | |
| GACACAATCAAATTGCTAGT+TGG | + | chr5_1:65606587-65606606 | None:intergenic | 35.0% | |
| ATTGAATTCTCACTCATTGC+AGG | - | chr5_1:65606632-65606651 | Msa0744700:intron | 35.0% | |
| ATGCAAGCTGATGAAGATAT+AGG | - | chr5_1:65606778-65606797 | Msa0744700:intron | 35.0% | |
| TGCAAGCTGATGAAGATATA+GGG | - | chr5_1:65606779-65606798 | Msa0744700:intron | 35.0% | |
| AGATATAGGGAAGATTGCAT+TGG | - | chr5_1:65606792-65606811 | Msa0744700:intron | 35.0% | |
| GACTACTTACAAACTAGAAG+AGG | + | chr5_1:65606823-65606842 | None:intergenic | 35.0% | |
| GAACATACGAGATAACACTT+AGG | - | chr5_1:65606998-65607017 | Msa0744700:intron | 35.0% | |
| ATACGAGATAACACTTAGGA+GGG | - | chr5_1:65607002-65607021 | Msa0744700:intron | 35.0% | |
| TTGGACCATGTTATATTCAG+CGG | - | chr5_1:65607089-65607108 | Msa0744700:intron | 35.0% | |
| ! | AGCTAGCAAAATTTTTACGC+AGG | - | chr5_1:65607115-65607134 | Msa0744700:intron | 35.0% |
| ! | GCTAGCAAAATTTTTACGCA+GGG | - | chr5_1:65607116-65607135 | Msa0744700:intron | 35.0% |
| ! | CTAGCAAAATTTTTACGCAG+GGG | - | chr5_1:65607117-65607136 | Msa0744700:intron | 35.0% |
| ! | TTTCGACAACTGAACTTGTT+TGG | - | chr5_1:65607783-65607802 | Msa0744700:intron | 35.0% |
| ! | TTCGACAACTGAACTTGTTT+GGG | - | chr5_1:65607784-65607803 | Msa0744700:intron | 35.0% |
| ! | TGTTTATTATTTGGGGTAGC+CGG | - | chr5_1:65607816-65607835 | Msa0744700:intron | 35.0% |
| !! | GGTCGGTATGTATTTTTATC+CGG | + | chr5_1:65607838-65607857 | None:intergenic | 35.0% |
| !!! | AGCTTTTAGAACCAAGAAAG+AGG | + | chr5_1:65607947-65607966 | None:intergenic | 35.0% |
| CAGGAATATTACTCAGCAAA+AGG | + | chr5_1:65608279-65608298 | None:intergenic | 35.0% | |
| GCCATAGAGCTATAATATAG+TGG | + | chr5_1:65608485-65608504 | None:intergenic | 35.0% | |
| GCTATAGAGCTATAACATAG+TGG | + | chr5_1:65608514-65608533 | None:intergenic | 35.0% | |
| TGATTATGGAAGTTCACTAC+TGG | - | chr5_1:65608585-65608604 | Msa0744700:intron | 35.0% | |
| ! | GATCTACAGTTTTACTTCCT+TGG | + | chr5_1:65608817-65608836 | None:intergenic | 35.0% |
| !! | TGTGAAGCATTGAAGCAAAA+CGG | - | chr5_1:65608872-65608891 | Msa0744700:intron | 35.0% |
| !!! | GGCTTACATTATTTTGAGTG+TGG | + | chr5_1:65608901-65608920 | None:intergenic | 35.0% |
| TTTAAATCTGAATCCGGATC+CGG | - | chr5_1:65609027-65609046 | Msa0744700:intron | 35.0% | |
| !! | ATTTTGAAGATGAACCGGAT+GGG | + | chr5_1:65609090-65609109 | None:intergenic | 35.0% |
| !! | CTTAAGTTGGCTAGTTGTAA+GGG | + | chr5_1:65609208-65609227 | None:intergenic | 35.0% |
| !! | ACTTAAGTTGGCTAGTTGTA+AGG | + | chr5_1:65609209-65609228 | None:intergenic | 35.0% |
| ! | ACAAATCCTTATTGGTTAGG+AGG | - | chr5_1:65609383-65609402 | Msa0744700:five_prime_UTR | 35.0% |
| TAGTCAGTACCTTCATTTAG+AGG | - | chr5_1:65609418-65609437 | Msa0744700:five_prime_UTR | 35.0% | |
| ATGGTGAAGACAAAACCTTG+TGG | + | chr5_1:65605354-65605373 | None:intergenic | 40.0% | |
| AAAGGGTAAACAAGGAAAGG+AGG | + | chr5_1:65605438-65605457 | None:intergenic | 40.0% | |
| ! | CCTTTCCTTGTTTACCCTTT+CGG | - | chr5_1:65605438-65605457 | Msa0744700:three_prime_UTR | 40.0% |
| TTTCTTGTCCCTCGTTGAAA+AGG | - | chr5_1:65605466-65605485 | Msa0744700:exon | 40.0% | |
| !! | TATGGATGATGGGTTTCTCT+TGG | - | chr5_1:65605601-65605620 | Msa0744700:CDS | 40.0% |
| !! | TTTCGTACAAAGTGTTGAGG+AGG | - | chr5_1:65605819-65605838 | Msa0744700:CDS | 40.0% |
| GTGTATGCAACTTGGGTTTA+AGG | - | chr5_1:65605845-65605864 | Msa0744700:CDS | 40.0% | |
| GTATGCAACTTGGGTTTAAG+GGG | - | chr5_1:65605847-65605866 | Msa0744700:CDS | 40.0% | |
| AACGTATCATATGCCGCTAT+TGG | + | chr5_1:65606236-65606255 | None:intergenic | 40.0% | |
| GGCATATGATACGTTGTCAT+AGG | - | chr5_1:65606241-65606260 | Msa0744700:intron | 40.0% | |
| TGAAATAGCAGACAGTTTCG+CGG | - | chr5_1:65606407-65606426 | Msa0744700:intron | 40.0% | |
| CTTACAAACTAGAAGAGGCA+CGG | + | chr5_1:65606818-65606837 | None:intergenic | 40.0% | |
| CATACGAGATAACACTTAGG+AGG | - | chr5_1:65607001-65607020 | Msa0744700:intron | 40.0% | |
| TACGAGATAACACTTAGGAG+GGG | - | chr5_1:65607003-65607022 | Msa0744700:intron | 40.0% | |
| ! | TCGACAACTGAACTTGTTTG+GGG | - | chr5_1:65607785-65607804 | Msa0744700:intron | 40.0% |
| !!! | TTTTTCTTTTGGGGTAGCCA+AGG | - | chr5_1:65607871-65607890 | Msa0744700:intron | 40.0% |
| AGAACAAATATAACCAGGGG+CGG | + | chr5_1:65607920-65607939 | None:intergenic | 40.0% | |
| GTGAGCAAAGTTCCTGATTT+AGG | - | chr5_1:65608040-65608059 | Msa0744700:intron | 40.0% | |
| AGCAAAGTTCCTGATTTAGG+CGG | - | chr5_1:65608043-65608062 | Msa0744700:intron | 40.0% | |
| GGAGACCAAGAGAAGTAAAA+TGG | - | chr5_1:65608225-65608244 | Msa0744700:intron | 40.0% | |
| !! | TACTGGCTTGTGAATGCAAA+TGG | - | chr5_1:65608602-65608621 | Msa0744700:intron | 40.0% |
| TAATGTAAGCCCAGAAATCG+AGG | - | chr5_1:65608910-65608929 | Msa0744700:intron | 40.0% | |
| GCTTAACTTCCTCGATTTCT+GGG | + | chr5_1:65608922-65608941 | None:intergenic | 40.0% | |
| AGCTTAACTTCCTCGATTTC+TGG | + | chr5_1:65608923-65608942 | None:intergenic | 40.0% | |
| GAACAATGCTTAACTTCCTC+AGG | + | chr5_1:65608965-65608984 | None:intergenic | 40.0% | |
| ! | GGAAGTTAAGCATTGTTCAC+CGG | - | chr5_1:65608967-65608986 | Msa0744700:intron | 40.0% |
| !!! | ACTTCAGCTGGTTTTCTTAC+CGG | + | chr5_1:65608989-65609008 | None:intergenic | 40.0% |
| ATTTCATCCATGTCGTCATC+CGG | + | chr5_1:65609049-65609068 | None:intergenic | 40.0% | |
| !! | GATTTTGAAGATGAACCGGA+TGG | + | chr5_1:65609091-65609110 | None:intergenic | 40.0% |
| TATCAGAAAAGGACCATCCA+GGG | + | chr5_1:65609165-65609184 | None:intergenic | 40.0% | |
| ATATCAGAAAAGGACCATCC+AGG | + | chr5_1:65609166-65609185 | None:intergenic | 40.0% | |
| ! | TGGATGGTCCTTTTCTGATA+TGG | - | chr5_1:65609165-65609184 | Msa0744700:intron | 40.0% |
| TCAATGCCTCCTAACCAATA+AGG | + | chr5_1:65609392-65609411 | None:intergenic | 40.0% | |
| TCTACTGAGCCTCTAAATGA+AGG | + | chr5_1:65609430-65609449 | None:intergenic | 40.0% | |
| TTGAAGAAGACGAAGAGGGA+AGG | + | chr5_1:65605305-65605324 | None:intergenic | 45.0% | |
| GAAAGGAGGAACTTACAGCA+GGG | + | chr5_1:65605424-65605443 | None:intergenic | 45.0% | |
| CCGAAAGGGTAAACAAGGAA+AGG | + | chr5_1:65605441-65605460 | None:intergenic | 45.0% | |
| GTACAGTTACGGTTCCTGAT+CGG | - | chr5_1:65606071-65606090 | Msa0744700:intron | 45.0% | |
| GAAATAGCAGACAGTTTCGC+GGG | - | chr5_1:65606408-65606427 | Msa0744700:intron | 45.0% | |
| CTTCGCCGCTGAATATAACA+TGG | + | chr5_1:65607097-65607116 | None:intergenic | 45.0% | |
| ACAGAACTCGCGCAAGAAAT+AGG | + | chr5_1:65608136-65608155 | None:intergenic | 45.0% | |
| ATATGCAAAGTGGTGTGCAG+TGG | + | chr5_1:65608302-65608321 | None:intergenic | 45.0% | |
| TTGTGCAGTGTTGCCTATCA+CGG | - | chr5_1:65608329-65608348 | Msa0744700:intron | 45.0% | |
| TTCACCAGTCAAAGAACCTG+AGG | - | chr5_1:65608946-65608965 | Msa0744700:intron | 45.0% | |
| ACTTCCTCAGGTTCTTTGAC+TGG | + | chr5_1:65608953-65608972 | None:intergenic | 45.0% | |
| GGTAAGAAAACCAGCTGAAG+TGG | - | chr5_1:65608988-65609007 | Msa0744700:intron | 45.0% | |
| TTTCGAACTACCACTTCAGC+TGG | + | chr5_1:65609001-65609020 | None:intergenic | 45.0% | |
| GAGAAGATTGAGGAATACCC+TGG | - | chr5_1:65609145-65609164 | Msa0744700:intron | 45.0% | |
| AGATTGAGGAATACCCTGGA+TGG | - | chr5_1:65609149-65609168 | Msa0744700:intron | 45.0% | |
| CGCGTTGAAGAAGACGAAGA+GGG | + | chr5_1:65605309-65605328 | None:intergenic | 50.0% | |
| ACGCGTTGAAGAAGACGAAG+AGG | + | chr5_1:65605310-65605329 | None:intergenic | 50.0% | |
| GGAAAGGAGGAACTTACAGC+AGG | + | chr5_1:65605425-65605444 | None:intergenic | 50.0% | |
| ! | ACTCTGTTGTGGGGGGTTTT+TGG | - | chr5_1:65605696-65605715 | Msa0744700:CDS | 50.0% |
| GAGGTGCGTGTATGCAACTT+GGG | - | chr5_1:65605838-65605857 | Msa0744700:CDS | 50.0% | |
| ! | CATAGGTTTGGCACCGCTTT+TGG | - | chr5_1:65606258-65606277 | Msa0744700:intron | 50.0% |
| GGCTGTCATGCTGTGTACTA+CGG | - | chr5_1:65606312-65606331 | Msa0744700:intron | 50.0% | |
| ATGCTGTGTACTACGGTACG+AGG | - | chr5_1:65606319-65606338 | Msa0744700:intron | 50.0% | |
| TGCTGTGTACTACGGTACGA+GGG | - | chr5_1:65606320-65606339 | Msa0744700:intron | 50.0% | |
| AGTTTCGCGGGCAATTGTGT+CGG | - | chr5_1:65606420-65606439 | Msa0744700:intron | 50.0% | |
| CGGTTCCTTTCATGTAGGAG+GGG | + | chr5_1:65607900-65607919 | None:intergenic | 50.0% | |
| GCGGTTCCTTTCATGTAGGA+GGG | + | chr5_1:65607901-65607920 | None:intergenic | 50.0% | |
| ACGACCAAGCTGTCACTAAG+AGG | - | chr5_1:65608083-65608102 | Msa0744700:intron | 50.0% | |
| ACCAAGCTGTCACTAAGAGG+AGG | - | chr5_1:65608086-65608105 | Msa0744700:intron | 50.0% | |
| ACCTCCTCTTAGTGACAGCT+TGG | + | chr5_1:65608090-65608109 | None:intergenic | 50.0% | |
| TGACGATGATGACAGCGATG+AGG | - | chr5_1:65608204-65608223 | Msa0744700:intron | 50.0% | |
| AACATGCGCATACCAGTGGA+AGG | - | chr5_1:65608756-65608775 | Msa0744700:intron | 50.0% | |
| ACATGCGCATACCAGTGGAA+GGG | - | chr5_1:65608757-65608776 | Msa0744700:intron | 50.0% | |
| ! | CAGTTTTACTTCCTTGGCCG+CGG | + | chr5_1:65608811-65608830 | None:intergenic | 50.0% |
| ACACCAACTCCTATCCCATC+CGG | - | chr5_1:65609073-65609092 | Msa0744700:intron | 50.0% | |
| GAAGATGAACCGGATGGGAT+AGG | + | chr5_1:65609085-65609104 | None:intergenic | 50.0% | |
| ! | GGAGGTGCGTGTATGCAACT+TGG | - | chr5_1:65605837-65605856 | Msa0744700:CDS | 55.0% |
| TCATGTAGGAGGGGTAGCCT+TGG | + | chr5_1:65607891-65607910 | None:intergenic | 55.0% | |
| GGCTACCCCTCCTACATGAA+AGG | - | chr5_1:65607892-65607911 | Msa0744700:intron | 55.0% | |
| GGCGGTTCCTTTCATGTAGG+AGG | + | chr5_1:65607902-65607921 | None:intergenic | 55.0% | |
| AGGGGCGGTTCCTTTCATGT+AGG | + | chr5_1:65607905-65607924 | None:intergenic | 55.0% | |
| TACATGAAAGGAACCGCCCC+TGG | - | chr5_1:65607904-65607923 | Msa0744700:intron | 55.0% | |
| GCAGCAGAACCGCCTAAATC+AGG | + | chr5_1:65608055-65608074 | None:intergenic | 55.0% | |
| TTAGGCGGTTCTGCTGCAAC+TGG | - | chr5_1:65608058-65608077 | Msa0744700:intron | 55.0% | |
| CTCGCGCAAGAAATAGGAGC+AGG | + | chr5_1:65608130-65608149 | None:intergenic | 55.0% | |
| CGCATGTTCTCGCTGTGTGA+AGG | + | chr5_1:65608744-65608763 | None:intergenic | 55.0% | |
| CGAGAACATGCGCATACCAG+TGG | - | chr5_1:65608752-65608771 | Msa0744700:intron | 55.0% | |
| CATGCGCATACCAGTGGAAG+GGG | - | chr5_1:65608758-65608777 | Msa0744700:intron | 55.0% | |
| TCCATGTCGTCATCCGGATC+CGG | + | chr5_1:65609043-65609062 | None:intergenic | 55.0% | |
| !! | GGATGGGATAGGAGTTGGTG+TGG | + | chr5_1:65609074-65609093 | None:intergenic | 55.0% |
| GAACCGGATGGGATAGGAGT+TGG | + | chr5_1:65609079-65609098 | None:intergenic | 55.0% | |
| ! | GGATACGCAACGCACCGATC+AGG | + | chr5_1:65606088-65606107 | None:intergenic | 60.0% |
| GCAAAGTGGTGTGCAGTGGC+AGG | + | chr5_1:65608298-65608317 | None:intergenic | 60.0% | |
| ATACCAGTGGAAGGGGCGGT+AGG | - | chr5_1:65608765-65608784 | Msa0744700:intron | 60.0% | |
| TACCAGTGGAAGGGGCGGTA+GGG | - | chr5_1:65608766-65608785 | Msa0744700:intron | 60.0% | |
| TCCGGATCCGGATGACGACA+TGG | - | chr5_1:65609039-65609058 | Msa0744700:intron | 60.0% | |
| GCGCATACCAGTGGAAGGGG+CGG | - | chr5_1:65608761-65608780 | Msa0744700:intron | 65.0% | |
| ACCAGTGGAAGGGGCGGTAG+GGG | - | chr5_1:65608767-65608786 | Msa0744700:intron | 65.0% | |
| ACCCCTACCGCCCCTTCCAC+TGG | + | chr5_1:65608771-65608790 | None:intergenic | 70.0% | |
| GGAAGGGGCGGTAGGGGTAG+AGG | - | chr5_1:65608773-65608792 | Msa0744700:intron | 70.0% | |
| GGGCGGTAGGGGTAGAGGCA+GGG | - | chr5_1:65608778-65608797 | Msa0744700:intron | 70.0% | |
| GGCGGTAGGGGTAGAGGCAG+GGG | - | chr5_1:65608779-65608798 | Msa0744700:intron | 70.0% | |
| AGGGGTAGAGGCAGGGGACG+TGG | - | chr5_1:65608785-65608804 | Msa0744700:intron | 70.0% | |
| GGGGCGGTAGGGGTAGAGGC+AGG | - | chr5_1:65608777-65608796 | Msa0744700:intron | 75.0% | |
| AGAGGCAGGGGACGTGGCCG+CGG | - | chr5_1:65608791-65608810 | Msa0744700:intron | 75.0% | |
| ! | AGGGGACGTGGCCGCGGCCA+AGG | - | chr5_1:65608797-65608816 | Msa0744700:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 65605246 | 65609497 | 65605246 | ID=Msa0744700;Name=Msa0744700 |
| chr5_1 | mRNA | 65605246 | 65609497 | 65605246 | ID=Msa0744700-mRNA-1;Parent=Msa0744700;Name=Msa0744700-mRNA-1;_AED=0.07;_eAED=0.07;_QI=149|1|1|1|1|1|6|224|298 |
| chr5_1 | exon | 65605246 | 65605991 | 65605246 | ID=Msa0744700-mRNA-1:exon:19529;Parent=Msa0744700-mRNA-1 |
| chr5_1 | exon | 65606497 | 65606554 | 65606497 | ID=Msa0744700-mRNA-1:exon:19528;Parent=Msa0744700-mRNA-1 |
| chr5_1 | exon | 65606636 | 65606752 | 65606636 | ID=Msa0744700-mRNA-1:exon:19527;Parent=Msa0744700-mRNA-1 |
| chr5_1 | exon | 65607691 | 65607784 | 65607691 | ID=Msa0744700-mRNA-1:exon:19526;Parent=Msa0744700-mRNA-1 |
| chr5_1 | exon | 65607911 | 65607983 | 65607911 | ID=Msa0744700-mRNA-1:exon:19525;Parent=Msa0744700-mRNA-1 |
| chr5_1 | exon | 65609316 | 65609497 | 65609316 | ID=Msa0744700-mRNA-1:exon:19524;Parent=Msa0744700-mRNA-1 |
| chr5_1 | five_prime_UTR | 65609349 | 65609497 | 65609349 | ID=Msa0744700-mRNA-1:five_prime_utr;Parent=Msa0744700-mRNA-1 |
| chr5_1 | CDS | 65609316 | 65609348 | 65609316 | ID=Msa0744700-mRNA-1:cds;Parent=Msa0744700-mRNA-1 |
| chr5_1 | CDS | 65607911 | 65607983 | 65607911 | ID=Msa0744700-mRNA-1:cds;Parent=Msa0744700-mRNA-1 |
| chr5_1 | CDS | 65607691 | 65607784 | 65607691 | ID=Msa0744700-mRNA-1:cds;Parent=Msa0744700-mRNA-1 |
| chr5_1 | CDS | 65606636 | 65606752 | 65606636 | ID=Msa0744700-mRNA-1:cds;Parent=Msa0744700-mRNA-1 |
| chr5_1 | CDS | 65606497 | 65606554 | 65606497 | ID=Msa0744700-mRNA-1:cds;Parent=Msa0744700-mRNA-1 |
| chr5_1 | CDS | 65605470 | 65605991 | 65605470 | ID=Msa0744700-mRNA-1:cds;Parent=Msa0744700-mRNA-1 |
| chr5_1 | three_prime_UTR | 65605246 | 65605469 | 65605246 | ID=Msa0744700-mRNA-1:three_prime_utr;Parent=Msa0744700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
