AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0746270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0746270 MtrunA17_Chr3g0131301 91.566 83 7 0 5 87 512 594 5.98e-45 154
Msa0746270 MtrunA17_Chr3g0131291 90.244 82 8 0 6 87 439 520 1.00e-42 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0746270 AT5G23570.4 63.855 83 30 0 5 87 418 500 2.97e-29 110
Msa0746270 AT5G23570.2 63.855 83 30 0 5 87 418 500 2.97e-29 110
Msa0746270 AT5G23570.1 58.696 92 38 0 5 96 418 509 8.02e-29 109
Msa0746270 AT5G23570.3 58.696 92 38 0 5 96 418 509 8.02e-29 109

Find 164 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACGATCTTTCTCTGAATT+TGG 0.145484 5_1:+68425030 Msa0746270:five_prime_UTR
CATCTTCGAGGCATCAATTT+TGG 0.174757 5_1:-68427084 None:intergenic
TTGAAACTTGTCTATGAATA+TGG 0.175406 5_1:-68424312 None:intergenic
TTACCTGAATTTCCCTGTTC+TGG 0.190563 5_1:-68425433 None:intergenic
TTGCTATATGAATGAATAAA+AGG 0.198484 5_1:-68425109 None:intergenic
CATGCAGAGGTTTCTTTATC+TGG 0.200070 5_1:+68426840 Msa0746270:five_prime_UTR
ATCAGAAGTCTGATTCTTAA+TGG 0.218539 5_1:-68426661 None:intergenic
TTCATTCATTTATTTGATTC+AGG 0.220263 5_1:+68424534 Msa0746270:five_prime_UTR
TTTGCTGACATGCCAGTTTC+AGG 0.221843 5_1:-68427989 None:intergenic
TGTTGGGGATCGATGTTATT+TGG 0.240823 5_1:+68429828 Msa0746270:three_prime_UTR
TCATCATGTGTGCAAAATTT+TGG 0.241469 5_1:+68424426 Msa0746270:five_prime_UTR
AACATACCTTTCTTGGGTTA+TGG 0.255938 5_1:-68427502 None:intergenic
AGTTGGATTCCAACATCTTT+TGG 0.261423 5_1:-68424506 None:intergenic
AAATCAAATGAGACAAAATT+TGG 0.262441 5_1:+68427609 Msa0746270:five_prime_UTR
TAAGCATAACATACCTTTCT+TGG 0.264582 5_1:-68427509 None:intergenic
TCTCACTTATTACAAATAAA+AGG 0.285361 5_1:-68430341 None:intergenic
CCACTGGTGTGCAACATTCT+AGG 0.296817 5_1:-68429883 None:intergenic
TATTCAGCCTCTGCGCTTGC+TGG 0.317270 5_1:+68424262 Msa0746270:five_prime_UTR
GATCCAGAACAGGGAAATTC+AGG 0.332455 5_1:+68425430 Msa0746270:five_prime_UTR
GACAAAATTTGGAAGCAAAA+TGG 0.343517 5_1:+68427620 Msa0746270:five_prime_UTR
TTTGCCTAAGTTTATCATCT+TGG 0.343609 5_1:+68424850 Msa0746270:five_prime_UTR
AGGATTGTGGATTCTGATAT+AGG 0.344426 5_1:+68425172 Msa0746270:five_prime_UTR
GTTGAATCCCGGTGAGATAA+TGG 0.356700 5_1:+68424335 Msa0746270:five_prime_UTR
GAAGCTTCATTTAAATAAAC+AGG 0.358919 5_1:-68425252 None:intergenic
TTTCTTGGGTTATGGATCTC+TGG 0.361460 5_1:-68427494 None:intergenic
TAAATGAATGAATTATTAGT+TGG 0.372025 5_1:-68424523 None:intergenic
AACAGCTTTGGAGTGTCATT+TGG 0.373751 5_1:+68427142 Msa0746270:five_prime_UTR
AGAAAATAAAAGAACAGCTT+TGG 0.376078 5_1:+68427130 Msa0746270:five_prime_UTR
ATGAATATGGGAGAACAATT+AGG 0.377302 5_1:-68424299 None:intergenic
GTGGGAGGGAAGATGAAATA+TGG 0.387082 5_1:+68424708 Msa0746270:five_prime_UTR
GGAGAACAATTAGGACAGTT+TGG 0.388049 5_1:-68424290 None:intergenic
GAAATGCTAACTTGTGCCCT+TGG 0.390396 5_1:+68430200 Msa0746270:three_prime_UTR
GATGTAGTTGGAGGCATGTT+GGG 0.390830 5_1:+68429812 Msa0746270:three_prime_UTR
AAATCTCTTGAGGAATCCTT+TGG 0.392718 5_1:+68428646 Msa0746270:CDS
AAGGCCATGTTTCCTGAAAC+TGG 0.394264 5_1:+68427977 Msa0746270:five_prime_UTR
CCAGCCAACTTGCCTGCACT+TGG 0.394445 5_1:-68427917 None:intergenic
GGGATCGATGTTATTTGGTC+TGG 0.403261 5_1:+68429833 Msa0746270:three_prime_UTR
ACAATTGCTTGATCCAGAAC+AGG 0.405161 5_1:+68425420 Msa0746270:five_prime_UTR
AAATGCTAACTTGTGCCCTT+GGG 0.412775 5_1:+68430201 Msa0746270:three_prime_UTR
TCATTCTGCACAACAACAAA+AGG 0.417391 5_1:-68423985 None:intergenic
CTTCCCCATCACAGTATTGC+CGG 0.427220 5_1:-68430136 None:intergenic
TCTTCAAATAAAGAAGTTGC+TGG 0.427490 5_1:-68428594 None:intergenic
CAGTTGCTGCTGCTTCTGAA+TGG 0.436581 5_1:+68424016 Msa0746270:five_prime_UTR
AATAAAATGTTCATAATAGT+AGG 0.438338 5_1:-68430311 None:intergenic
AAGCATAACATACCTTTCTT+GGG 0.441532 5_1:-68427508 None:intergenic
GCTTCCAAATCTACAAAAGT+TGG 0.444552 5_1:+68425270 Msa0746270:five_prime_UTR
TGAAAGAGTAACATCCTGTC+TGG 0.445042 5_1:-68426607 None:intergenic
AATAACAAGTATGAAAGAAA+TGG 0.445451 5_1:+68426692 Msa0746270:five_prime_UTR
GGTGGCAATCGACAGCTCTT+CGG 0.448518 5_1:+68426542 Msa0746270:intron
GTTGCTTGAATTCATCTTCG+AGG 0.451593 5_1:-68427096 None:intergenic
TTTCAGCCTTGTCGTCAAAT+CGG 0.455474 5_1:+68429764 Msa0746270:three_prime_UTR
AGTTGCTGCTGCTTCTGAAT+GGG 0.456064 5_1:+68424017 Msa0746270:five_prime_UTR
ATGCATGTGGATTCTGATAT+AGG 0.458876 5_1:+68424937 Msa0746270:five_prime_UTR
TAATCAACTATCAGGATTAG+TGG 0.468182 5_1:+68424689 Msa0746270:intron
CACAATGTGATTCTCCTCCA+TGG 0.469410 5_1:-68428695 None:intergenic
TGAAACTTGTCTATGAATAT+GGG 0.471495 5_1:-68424311 None:intergenic
TTCACGAAGATGTAAGTAGA+AGG 0.473541 5_1:+68427954 Msa0746270:five_prime_UTR
TTGAGAAGGTTGTCCTATGT+TGG 0.477247 5_1:+68429911 Msa0746270:three_prime_UTR
TTATACACTTTCAGATCATC+CGG 0.478387 5_1:+68430117 Msa0746270:intron
CCAAGTGCAGGCAAGTTGGC+TGG 0.478635 5_1:+68427917 Msa0746270:five_prime_UTR
TTCGTTACTTTGCTAGAACC+TGG 0.478950 5_1:-68427657 None:intergenic
GTTAGAGAAGCAGTTAATGT+AGG 0.480862 5_1:+68426993 Msa0746270:five_prime_UTR
ATATATTTGACTTCTTAACT+TGG 0.484934 5_1:-68427375 None:intergenic
AGCAAGCGCAGAGGCTGAAT+AGG 0.488171 5_1:-68424260 None:intergenic
AAGAATAATTCGTCAACAGC+GGG 0.488779 5_1:+68427427 Msa0746270:five_prime_UTR
AGATGTAGTTGGAGGCATGT+TGG 0.492217 5_1:+68429811 Msa0746270:three_prime_UTR
AGTGAATGAACTTCGAAAGA+AGG 0.493841 5_1:+68425152 Msa0746270:five_prime_UTR
TTTATGTCTTCTGCATTGCT+CGG 0.495746 5_1:+68429703 Msa0746270:three_prime_UTR
TCGTTACTTTGCTAGAACCT+GGG 0.502319 5_1:-68427656 None:intergenic
AAGGATGCACCAGCGTTGCT+TGG 0.504106 5_1:+68427678 Msa0746270:five_prime_UTR
TCATCCGGCAATACTGTGAT+GGG 0.506156 5_1:+68430132 Msa0746270:three_prime_UTR
ACTTAGGAGACAATTTCAAC+TGG 0.507613 5_1:+68429582 Msa0746270:intron
TCCTGTCTGGAAACTATTGA+AGG 0.508364 5_1:-68426594 None:intergenic
TGTAATGAAATAACACCCAA+TGG 0.508997 5_1:-68429648 None:intergenic
GGAAACTATTGAAGGCCTCC+AGG 0.511331 5_1:-68426586 None:intergenic
TACCATGTTCAGATGGCAAC+TGG 0.511457 5_1:+68429737 Msa0746270:three_prime_UTR
TCTTCTGCATTGCTCGGCTG+TGG 0.511986 5_1:+68429709 Msa0746270:three_prime_UTR
ATCTCAATATGCTTCACTAC+AGG 0.514429 5_1:+68424098 Msa0746270:five_prime_UTR
ATGGTAAGCGGTTCACTCCC+AGG 0.519431 5_1:+68427639 Msa0746270:five_prime_UTR
TTTGATGCACAACCATCTCT+TGG 0.519566 5_1:-68428549 None:intergenic
GTAATGAAATAACACCCAAT+GGG 0.520914 5_1:-68429647 None:intergenic
CCTTGTCGTCAAATCGGAGC+TGG 0.521601 5_1:+68429770 Msa0746270:three_prime_UTR
GATCAAGCAATTGTAGAAGC+AGG 0.524551 5_1:-68425411 None:intergenic
AATCACTTTGACCTACAGAC+TGG 0.529057 5_1:-68426791 None:intergenic
GAACTTCGAAAGAAGGATTG+TGG 0.531993 5_1:+68425159 Msa0746270:five_prime_UTR
AAAATGTTCCATTATCTCAC+CGG 0.533489 5_1:-68424343 None:intergenic
ATTAGCAAAATTAAAGCATG+TGG 0.534684 5_1:-68424370 None:intergenic
AAATTGAGGCAAATAGAAAG+AGG 0.539319 5_1:+68425362 Msa0746270:five_prime_UTR
TCAAAGATCAAAACCAACAT+AGG 0.540196 5_1:-68429924 None:intergenic
GCCTTCAATAGTTTCCAGAC+AGG 0.540883 5_1:+68426593 Msa0746270:five_prime_UTR
ATACTGTGATGGGGAAGCAC+TGG 0.541385 5_1:+68430142 Msa0746270:three_prime_UTR
GTCATTTGGCTACAGCAAGC+AGG 0.544587 5_1:+68427156 Msa0746270:five_prime_UTR
CATACCAAGATGATAAACTT+AGG 0.545117 5_1:-68424854 None:intergenic
ATCATCCGGCAATACTGTGA+TGG 0.545123 5_1:+68430131 Msa0746270:three_prime_UTR
AACAGAATCGAAATCTGAGC+AGG 0.545749 5_1:+68426749 Msa0746270:five_prime_UTR
TGCATCTGTGTAGATGTAGT+TGG 0.547258 5_1:+68429800 Msa0746270:three_prime_UTR
AGTGTGAATCCAAAAGATGT+TGG 0.547521 5_1:+68424497 Msa0746270:five_prime_UTR
TCGACAGCTCTTCGGATGCA+TGG 0.547576 5_1:+68426550 Msa0746270:intron
CTGATTCAGTGGTATGAGGT+GGG 0.550804 5_1:-68426962 None:intergenic
CCAAATCTACAAAAGTTGGT+TGG 0.551342 5_1:+68425274 Msa0746270:five_prime_UTR
AATCAACTATCAGGATTAGT+GGG 0.552949 5_1:+68424690 Msa0746270:intron
CCATCTGATTCAGTGGTATG+AGG 0.554125 5_1:-68426966 None:intergenic
CATGGCAACTAAAGAAGACC+TGG 0.556551 5_1:+68426568 Msa0746270:five_prime_UTR
TTAGATGCTACACCAAGTGC+AGG 0.557009 5_1:+68427905 Msa0746270:five_prime_UTR
TCTTTATTTGAAGAACAAGA+TGG 0.560615 5_1:+68428603 Msa0746270:CDS
ACAAGTTTCAAGTTGAATCC+CGG 0.561094 5_1:+68424324 Msa0746270:five_prime_UTR
AGAGATCCATAACCCAAGAA+AGG 0.563999 5_1:+68427496 Msa0746270:five_prime_UTR
AACTATCAGGATTAGTGGGA+GGG 0.564101 5_1:+68424694 Msa0746270:intron
AACCTTCTCAAAATAACCAC+TGG 0.564295 5_1:-68429899 None:intergenic
AAATGTTCCATTATCTCACC+GGG 0.566603 5_1:-68424342 None:intergenic
CATGCCAGTTTCAGGAAACA+TGG 0.567360 5_1:-68427981 None:intergenic
CACCAGTTGCCATCTGAACA+TGG 0.572927 5_1:-68429739 None:intergenic
GATTCTTAATGGCCATGTCA+AGG 0.573422 5_1:-68426650 None:intergenic
AACAATGCCATCTGATTCAG+TGG 0.575477 5_1:-68426973 None:intergenic
TACACCAAGTGCAGGCAAGT+TGG 0.575718 5_1:+68427913 Msa0746270:five_prime_UTR
AAGGTATCTTCCCAGTCTGT+AGG 0.576262 5_1:+68426780 Msa0746270:five_prime_UTR
TTAGCAAAATTAAAGCATGT+GGG 0.576851 5_1:-68424369 None:intergenic
ATGAAATAACACCCAATGGG+AGG 0.577844 5_1:-68429644 None:intergenic
CTGATTCTGTAGGTAAAACA+AGG 0.579636 5_1:+68428503 Msa0746270:intron
TTCCTCTGAGAACCTTGACA+TGG 0.579915 5_1:+68426638 Msa0746270:five_prime_UTR
AAAGATGGGTTGAGAGACAC+AGG 0.581125 5_1:-68424072 None:intergenic
GCATGAAGAAATAAAAGAAG+AGG 0.582341 5_1:+68428738 Msa0746270:CDS
GAAACATTCAAAATCTCTTG+AGG 0.583454 5_1:+68428636 Msa0746270:CDS
CCTAGAATGTTGCACACCAG+TGG 0.584494 5_1:+68429883 Msa0746270:three_prime_UTR
GCAACAATCATATCGAAGAC+TGG 0.585430 5_1:+68424787 Msa0746270:five_prime_UTR
ATCTTAAAAGTTGTAATACC+AGG 0.590739 5_1:+68427712 Msa0746270:five_prime_UTR
CATTCTGCACAACAACAAAA+GGG 0.593406 5_1:-68423984 None:intergenic
CGAAGATGTAAGTAGAAGGA+AGG 0.594767 5_1:+68427958 Msa0746270:five_prime_UTR
GAACAATTAGGACAGTTTGG+AGG 0.599238 5_1:-68424287 None:intergenic
TCTGATTCAGTGGTATGAGG+TGG 0.599621 5_1:-68426963 None:intergenic
TGAAATAACACCCAATGGGA+GGG 0.600756 5_1:-68429643 None:intergenic
CAAGGCTCAAGTATGAAATG+AGG 0.603974 5_1:+68428521 Msa0746270:CDS
ATGTAGTTGGAGGCATGTTG+GGG 0.605055 5_1:+68429813 Msa0746270:three_prime_UTR
ATCAAGCAATTGTAGAAGCA+GGG 0.608315 5_1:-68425410 None:intergenic
CGAGAAACTGCGTAAAACCA+TGG 0.608482 5_1:+68428678 Msa0746270:CDS
CTTAAACAAATGCATGCATG+TGG 0.610173 5_1:+68424924 Msa0746270:five_prime_UTR
TTTCTCGGTCACTATACCAA+AGG 0.611686 5_1:-68428662 None:intergenic
AAATTGCAATTGTCTATGAA+CGG 0.611786 5_1:-68429683 None:intergenic
AATGCTAACTTGTGCCCTTG+GGG 0.614652 5_1:+68430202 Msa0746270:three_prime_UTR
ATCTGAGCAGGTTATCAACA+AGG 0.618921 5_1:+68426761 Msa0746270:five_prime_UTR
ATCACTTTGACCTACAGACT+GGG 0.619114 5_1:-68426790 None:intergenic
CCTCATACCACTGAATCAGA+TGG 0.624063 5_1:+68426966 Msa0746270:five_prime_UTR
TAGCAAAATTAAAGCATGTG+GGG 0.624607 5_1:-68424368 None:intergenic
TTTGGAAGCAAAATGGTAAG+CGG 0.624962 5_1:+68427627 Msa0746270:five_prime_UTR
CAACTATCAGGATTAGTGGG+AGG 0.627483 5_1:+68424693 Msa0746270:intron
TGGAGGAGAATCACATTGTG+AGG 0.630076 5_1:+68428698 Msa0746270:CDS
AAATAAGCTCAATTCGAACA+AGG 0.630864 5_1:+68430384 Msa0746270:three_prime_UTR
AATGAGGTTCTACCAAGAGA+TGG 0.634854 5_1:+68428537 Msa0746270:CDS
CCAGCTCCGATTTGACGACA+AGG 0.635649 5_1:-68429770 None:intergenic
AAAGAATAATTCGTCAACAG+CGG 0.640635 5_1:+68427426 Msa0746270:five_prime_UTR
AACGAAAGAACATTTGACAA+TGG 0.641993 5_1:-68424049 None:intergenic
CCTTCTGCAAAATAGAGCAG+TGG 0.647097 5_1:+68429611 Msa0746270:CDS
CAATTGCTTGATCCAGAACA+GGG 0.648197 5_1:+68425421 Msa0746270:five_prime_UTR
TGATTCAGTGGTATGAGGTG+GGG 0.650629 5_1:-68426961 None:intergenic
ATCTGTGTAGATGTAGTTGG+AGG 0.654939 5_1:+68429803 Msa0746270:three_prime_UTR
AATCTCAGAGCAGCATGCAG+AGG 0.662269 5_1:+68426827 Msa0746270:five_prime_UTR
GGTTGCATACCATGTTCAGA+TGG 0.674034 5_1:+68429730 Msa0746270:three_prime_UTR
AGGAGAATCACATTGTGAGG+CGG 0.677580 5_1:+68428701 Msa0746270:CDS
AGGTTCTAGCAAAGTAACGA+AGG 0.677876 5_1:+68427659 Msa0746270:five_prime_UTR
CATCCGGCAATACTGTGATG+GGG 0.685937 5_1:+68430133 Msa0746270:three_prime_UTR
GGCCATGTCAAGGTTCTCAG+AGG 0.691240 5_1:-68426640 None:intergenic
GGAGGAACCAGCAAGCGCAG+AGG 0.697641 5_1:-68424269 None:intergenic
GGCAACTAAAGAAGACCTGG+AGG 0.707637 5_1:+68426571 Msa0746270:five_prime_UTR
GAAACTGCGTAAAACCATGG+AGG 0.748048 5_1:+68428681 Msa0746270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCTATAACAAAATTTA+TGG - chr5_1:68425835-68425854 None:intergenic 10.0%
!! TGTTTGGTTAAAAAATAAAA+TGG + chr5_1:68424449-68424468 Msa0746270:five_prime_UTR 15.0%
!! TAAATGAATGAATTATTAGT+TGG - chr5_1:68424526-68424545 None:intergenic 15.0%
!!! AACTTTTCATTCAATTATTT+TGG + chr5_1:68424567-68424586 Msa0746270:intron 15.0%
!! ATTATAGTAACAAAAGAAAT+AGG - chr5_1:68424629-68424648 None:intergenic 15.0%
!! TTTATTATTAATCAACTATC+AGG + chr5_1:68424681-68424700 Msa0746270:intron 15.0%
!! ATAAATGTCCAATATATAAT+GGG - chr5_1:68429176-68429195 None:intergenic 15.0%
!! TTTATAATATAAACACAAAC+TGG - chr5_1:68429312-68429331 None:intergenic 15.0%
!!! GATTTTCATATTTATTTCAA+TGG + chr5_1:68429502-68429521 Msa0746270:intron 15.0%
!! AAATGTAGAAAAAAATATCT+TGG + chr5_1:68430241-68430260 Msa0746270:three_prime_UTR 15.0%
!! AATAAAATGTTCATAATAGT+AGG - chr5_1:68430314-68430333 None:intergenic 15.0%
!!! CATATTGAGATTTTAAAGAT+GGG - chr5_1:68424089-68424108 None:intergenic 20.0%
!! TTGGTTAAAAAATAAAATGG+CGG + chr5_1:68424452-68424471 Msa0746270:five_prime_UTR 20.0%
!! TTCATTCATTTATTTGATTC+AGG + chr5_1:68424534-68424553 Msa0746270:five_prime_UTR 20.0%
!! TTGTTTAAGTGATGAAAAAA+AGG - chr5_1:68424913-68424932 None:intergenic 20.0%
!! TTATCACAAAAAATTCAATG+AGG - chr5_1:68424967-68424986 None:intergenic 20.0%
!! TTGCTATATGAATGAATAAA+AGG - chr5_1:68425112-68425131 None:intergenic 20.0%
!!! TCTTCTTTTTTTGTTTCTTT+TGG - chr5_1:68425932-68425951 None:intergenic 20.0%
!! ATCAAGAATTATATACATGT+AGG + chr5_1:68426058-68426077 Msa0746270:intron 20.0%
!! AAACCTTAACATAGTAATTA+TGG - chr5_1:68426191-68426210 None:intergenic 20.0%
!!! TTACTATGTTAAGGTTTTAT+TGG + chr5_1:68426194-68426213 Msa0746270:intron 20.0%
!! TGAATGTGAATTAAAAGAAT+AGG - chr5_1:68426286-68426305 None:intergenic 20.0%
!! AGTTTATATTCAAGTAATGA+AGG - chr5_1:68426417-68426436 None:intergenic 20.0%
!! AATAACAAGTATGAAAGAAA+TGG + chr5_1:68426692-68426711 Msa0746270:five_prime_UTR 20.0%
!!! CTTCAGATAAGTTTTTTTTT+TGG - chr5_1:68426719-68426738 None:intergenic 20.0%
!! TTAAAAAGAGGTTAATGATA+AGG + chr5_1:68426890-68426909 Msa0746270:five_prime_UTR 20.0%
!!! ATATATTTGACTTCTTAACT+TGG - chr5_1:68427378-68427397 None:intergenic 20.0%
!! AAATCAAATGAGACAAAATT+TGG + chr5_1:68427609-68427628 Msa0746270:five_prime_UTR 20.0%
!! CAAAAAATGTTAATATTTCG+AGG + chr5_1:68428008-68428027 Msa0746270:exon 20.0%
!!! ACTCTTATAATTTTTAGTTC+TGG - chr5_1:68428073-68428092 None:intergenic 20.0%
!! ATGAGTTAGCAAATAAATTT+CGG + chr5_1:68428202-68428221 Msa0746270:intron 20.0%
!! TTACTTGAAGCATATTAATT+AGG + chr5_1:68428781-68428800 Msa0746270:intron 20.0%
!! TCTCCTTATAAAATTATTTG+TGG + chr5_1:68428828-68428847 Msa0746270:intron 20.0%
!!! TGTCCACAAATAATTTTATA+AGG - chr5_1:68428834-68428853 None:intergenic 20.0%
!!! TTGTTTGCTATTAAGAATAT+GGG - chr5_1:68429122-68429141 None:intergenic 20.0%
!!! TTTGTTTGCTATTAAGAATA+TGG - chr5_1:68429123-68429142 None:intergenic 20.0%
!! GATAAATGTCCAATATATAA+TGG - chr5_1:68429177-68429196 None:intergenic 20.0%
!!! ATTTTTCTTTTTTTCTCCAA+AGG - chr5_1:68429472-68429491 None:intergenic 20.0%
!!! CTTAACTGTATTATTTTTGT+TGG + chr5_1:68429559-68429578 Msa0746270:intron 20.0%
!! TCTCACTTATTACAAATAAA+AGG - chr5_1:68430344-68430363 None:intergenic 20.0%
!!! GCATATTGAGATTTTAAAGA+TGG - chr5_1:68424090-68424109 None:intergenic 25.0%
! CAAATTCAATTGCAAAATCT+GGG - chr5_1:68424132-68424151 None:intergenic 25.0%
! ACAAATTCAATTGCAAAATC+TGG - chr5_1:68424133-68424152 None:intergenic 25.0%
! AAGGTGATAAAACACAAATA+AGG - chr5_1:68424191-68424210 None:intergenic 25.0%
! TGAAACTTGTCTATGAATAT+GGG - chr5_1:68424314-68424333 None:intergenic 25.0%
! TTGAAACTTGTCTATGAATA+TGG - chr5_1:68424315-68424334 None:intergenic 25.0%
! TTAGCAAAATTAAAGCATGT+GGG - chr5_1:68424372-68424391 None:intergenic 25.0%
! ATTAGCAAAATTAAAGCATG+TGG - chr5_1:68424373-68424392 None:intergenic 25.0%
! ATTGAATGAAAAGTTGAGAA+GGG - chr5_1:68424562-68424581 None:intergenic 25.0%
! AATTGAATGAAAAGTTGAGA+AGG - chr5_1:68424563-68424582 None:intergenic 25.0%
! GAAGCTTCATTTAAATAAAC+AGG - chr5_1:68425255-68425274 None:intergenic 25.0%
! TCAAGAAATTATCCACAAAT+AGG + chr5_1:68425593-68425612 Msa0746270:intron 25.0%
!! AAACAGAAAGCATATTGAAT+GGG - chr5_1:68425738-68425757 None:intergenic 25.0%
!! TAAACAGAAAGCATATTGAA+TGG - chr5_1:68425739-68425758 None:intergenic 25.0%
!! TGCTTTCTGTTTAATTTCAT+TGG + chr5_1:68425746-68425765 Msa0746270:intron 25.0%
! CTTTAATAAAACCTATGTCA+GGG - chr5_1:68426010-68426029 None:intergenic 25.0%
! TCTTTAATAAAACCTATGTC+AGG - chr5_1:68426011-68426030 None:intergenic 25.0%
! TCCTAATATTTATTTGTCTC+TGG + chr5_1:68426151-68426170 Msa0746270:intron 25.0%
! TCCAGAGACAAATAAATATT+AGG - chr5_1:68426155-68426174 None:intergenic 25.0%
! ACATAGTAATTATGGACATT+TGG - chr5_1:68426183-68426202 None:intergenic 25.0%
! TGTCCATAATTACTATGTTA+AGG + chr5_1:68426185-68426204 Msa0746270:intron 25.0%
! TCATAAATGTGGATTTACAA+AGG - chr5_1:68426392-68426411 None:intergenic 25.0%
! TAATGAAGGAATCATAAATG+TGG - chr5_1:68426403-68426422 None:intergenic 25.0%
! TTCCAAGAAAATTCATGATA+GGG - chr5_1:68426463-68426482 None:intergenic 25.0%
! TTTCCAAGAAAATTCATGAT+AGG - chr5_1:68426464-68426483 None:intergenic 25.0%
! AGAAAATAAAAGAACAGCTT+TGG + chr5_1:68427130-68427149 Msa0746270:five_prime_UTR 25.0%
! GCAAAGATGTGATTATAAAA+AGG - chr5_1:68427197-68427216 None:intergenic 25.0%
!!! AATGTGGTTTTATCAACTAT+GGG - chr5_1:68427337-68427356 None:intergenic 25.0%
!! TTTAAAGACATTTTGTTCTC+TGG - chr5_1:68427409-68427428 None:intergenic 25.0%
! ACCTTAACAATTGTATTTGA+TGG + chr5_1:68427531-68427550 Msa0746270:intron 25.0%
! CCTTAACAATTGTATTTGAT+GGG + chr5_1:68427532-68427551 Msa0746270:intron 25.0%
! ATCTTAAAAGTTGTAATACC+AGG + chr5_1:68427712-68427731 Msa0746270:five_prime_UTR 25.0%
! ATGAGCATATATATATTACC+TGG - chr5_1:68427733-68427752 None:intergenic 25.0%
! AGGTAATATATATATGCTCA+TGG + chr5_1:68427732-68427751 Msa0746270:intron 25.0%
! AACAATCACATTCATTACTT+AGG - chr5_1:68427847-68427866 None:intergenic 25.0%
! AATGTTAATATTTCGAGGTA+AGG + chr5_1:68428013-68428032 Msa0746270:intron 25.0%
! AAATTATAAGAGTCCAGATA+TGG + chr5_1:68428080-68428099 Msa0746270:intron 25.0%
!! ATATGATTTTATGATACTGC+AGG - chr5_1:68428129-68428148 None:intergenic 25.0%
! TGCAGTATCATAAAATCATA+TGG + chr5_1:68428128-68428147 Msa0746270:intron 25.0%
! GCAGTATCATAAAATCATAT+GGG + chr5_1:68428129-68428148 Msa0746270:intron 25.0%
!! TCTAGTTTGAATAAAAGCAT+AGG - chr5_1:68428164-68428183 None:intergenic 25.0%
! TCTTTGTACTTTCACTATTT+AGG + chr5_1:68428395-68428414 Msa0746270:intron 25.0%
! AGAATCAGATTAAAAGAGAA+AGG - chr5_1:68428491-68428510 None:intergenic 25.0%
!! TCTTTATTTGAAGAACAAGA+TGG + chr5_1:68428603-68428622 Msa0746270:CDS 25.0%
! TAAGCAATATAAAGTGAAGT+TGG - chr5_1:68429543-68429562 None:intergenic 25.0%
!!! GTATTATTTTTGTTGGACTT+AGG + chr5_1:68429566-68429585 Msa0746270:intron 25.0%
! AAATTGCAATTGTCTATGAA+CGG - chr5_1:68429686-68429705 None:intergenic 25.0%
!!! ATAGTTTTAAGGCTATATCA+TGG + chr5_1:68429991-68430010 Msa0746270:intron 25.0%
!!! TAGTTTTAAGGCTATATCAT+GGG + chr5_1:68429992-68430011 Msa0746270:intron 25.0%
!! TCTAATTTTATCAACAACTG+TGG + chr5_1:68430076-68430095 Msa0746270:intron 25.0%
!! AGCAATCTTCTATACTTTTA+AGG + chr5_1:68430177-68430196 Msa0746270:three_prime_UTR 25.0%
!! GCAATCTTCTATACTTTTAA+GGG + chr5_1:68430178-68430197 Msa0746270:three_prime_UTR 25.0%
AACGAAAGAACATTTGACAA+TGG - chr5_1:68424052-68424071 None:intergenic 30.0%
CACAAATAAAGTGACTGAAT+AGG - chr5_1:68424221-68424240 None:intergenic 30.0%
ATGAATATGGGAGAACAATT+AGG - chr5_1:68424302-68424321 None:intergenic 30.0%
AAAATGTTCCATTATCTCAC+CGG - chr5_1:68424346-68424365 None:intergenic 30.0%
TAGCAAAATTAAAGCATGTG+GGG - chr5_1:68424371-68424390 None:intergenic 30.0%
! TCATCATGTGTGCAAAATTT+TGG + chr5_1:68424426-68424445 Msa0746270:five_prime_UTR 30.0%
! TAAAAGTCGTTTGAAGCAAT+CGG - chr5_1:68424665-68424684 None:intergenic 30.0%
TAATCAACTATCAGGATTAG+TGG + chr5_1:68424689-68424708 Msa0746270:intron 30.0%
! AATCAACTATCAGGATTAGT+GGG + chr5_1:68424690-68424709 Msa0746270:intron 30.0%
! ACAATCTGCACAATTTTCAA+AGG + chr5_1:68424744-68424763 Msa0746270:five_prime_UTR 30.0%
! TCAAAGGATTTTGTAATGTG+AGG + chr5_1:68424760-68424779 Msa0746270:five_prime_UTR 30.0%
TTTGCCTAAGTTTATCATCT+TGG + chr5_1:68424850-68424869 Msa0746270:five_prime_UTR 30.0%
CATACCAAGATGATAAACTT+AGG - chr5_1:68424857-68424876 None:intergenic 30.0%
TGATGAAAAAAAGGTCTCAA+AGG - chr5_1:68424904-68424923 None:intergenic 30.0%
!! TGGTTGGTGTAAATTTTGTT+TGG + chr5_1:68425290-68425309 Msa0746270:five_prime_UTR 30.0%
AAATTGAGGCAAATAGAAAG+AGG + chr5_1:68425362-68425381 Msa0746270:five_prime_UTR 30.0%
!! TGCTAGTTTGTCTATGTTTT+TGG - chr5_1:68425539-68425558 None:intergenic 30.0%
TCTGATTACAATCAACATCA+TGG - chr5_1:68425799-68425818 None:intergenic 30.0%
ATGATAGATTGTACCAAAGA+AGG + chr5_1:68425895-68425914 Msa0746270:intron 30.0%
GGTATAATTGTTTCCTTCTT+TGG - chr5_1:68425911-68425930 None:intergenic 30.0%
!! TGTTGATTGCTAAGTTTTTG+TGG + chr5_1:68425974-68425993 Msa0746270:intron 30.0%
! TTTTTGATACGTGATCATCA+TGG + chr5_1:68426219-68426238 Msa0746270:intron 30.0%
!!! ATGAAGGCATTTTGTTTGAT+TGG + chr5_1:68426252-68426271 Msa0746270:intron 30.0%
! TACCCTATCATGAATTTTCT+TGG + chr5_1:68426458-68426477 Msa0746270:intron 30.0%
GGAGAAACAAATTGTAACTT+CGG - chr5_1:68426520-68426539 None:intergenic 30.0%
ATCAGAAGTCTGATTCTTAA+TGG - chr5_1:68426664-68426683 None:intergenic 30.0%
TGTTGCATCTGATTAAAAAG+AGG + chr5_1:68426878-68426897 Msa0746270:five_prime_UTR 30.0%
!!! ATGTGGTTTTATCAACTATG+GGG - chr5_1:68427336-68427355 None:intergenic 30.0%
!!! CAATGTGGTTTTATCAACTA+TGG - chr5_1:68427338-68427357 None:intergenic 30.0%
AAAGAATAATTCGTCAACAG+CGG + chr5_1:68427426-68427445 Msa0746270:five_prime_UTR 30.0%
AAGCATAACATACCTTTCTT+GGG - chr5_1:68427511-68427530 None:intergenic 30.0%
TAAGCATAACATACCTTTCT+TGG - chr5_1:68427512-68427531 None:intergenic 30.0%
CCCATCAAATACAATTGTTA+AGG - chr5_1:68427535-68427554 None:intergenic 30.0%
GACAAAATTTGGAAGCAAAA+TGG + chr5_1:68427620-68427639 Msa0746270:five_prime_UTR 30.0%
! CTCTTTTAATCTGATTCTGT+AGG + chr5_1:68428493-68428512 Msa0746270:intron 30.0%
TCTTCAAATAAAGAAGTTGC+TGG - chr5_1:68428597-68428616 None:intergenic 30.0%
GAAACATTCAAAATCTCTTG+AGG + chr5_1:68428636-68428655 Msa0746270:CDS 30.0%
GCATGAAGAAATAAAAGAAG+AGG + chr5_1:68428738-68428757 Msa0746270:CDS 30.0%
TTATTTGTGGACAATCAAGT+TGG + chr5_1:68428841-68428860 Msa0746270:intron 30.0%
! CCTGCAAAAATGTGATTTTT+GGG + chr5_1:68428993-68429012 Msa0746270:intron 30.0%
TGCAATATCTAAACGTTTCA+TGG - chr5_1:68429090-68429109 None:intergenic 30.0%
GCTATTAAGAATATGGGAAA+AGG - chr5_1:68429116-68429135 None:intergenic 30.0%
TATATTGGACATTTATCCAG+AGG + chr5_1:68429180-68429199 Msa0746270:intron 30.0%
TCTTGGAAAGATTTGGATTT+GGG + chr5_1:68429237-68429256 Msa0746270:intron 30.0%
!! GTACTTATGTTTTGTTGTAG+AGG + chr5_1:68429264-68429283 Msa0746270:intron 30.0%
ATGGTCAATGTTGAAATTAC+CGG - chr5_1:68429364-68429383 None:intergenic 30.0%
GTAATGAAATAACACCCAAT+GGG - chr5_1:68429650-68429669 None:intergenic 30.0%
TGTAATGAAATAACACCCAA+TGG - chr5_1:68429651-68429670 None:intergenic 30.0%
TCAAAGATCAAAACCAACAT+AGG - chr5_1:68429927-68429946 None:intergenic 30.0%
! TAAGTTGTGCAAAATTTTGC+AGG + chr5_1:68429952-68429971 Msa0746270:intron 30.0%
!! TAGTGAGGCTAATAGTTTTA+AGG + chr5_1:68429980-68429999 Msa0746270:intron 30.0%
TTATACACTTTCAGATCATC+CGG + chr5_1:68430117-68430136 Msa0746270:intron 30.0%
AAATAAGCTCAATTCGAACA+AGG + chr5_1:68430384-68430403 Msa0746270:three_prime_UTR 30.0%
CATTCTGCACAACAACAAAA+GGG - chr5_1:68423987-68424006 None:intergenic 35.0%
TCATTCTGCACAACAACAAA+AGG - chr5_1:68423988-68424007 None:intergenic 35.0%
ATCTCAATATGCTTCACTAC+AGG + chr5_1:68424098-68424117 Msa0746270:five_prime_UTR 35.0%
AATATGCTTCACTACAGGTA+TGG + chr5_1:68424103-68424122 Msa0746270:intron 35.0%
!! ACAAGTTTCAAGTTGAATCC+CGG + chr5_1:68424324-68424343 Msa0746270:five_prime_UTR 35.0%
AAATGTTCCATTATCTCACC+GGG - chr5_1:68424345-68424364 None:intergenic 35.0%
!!! GTGTGCAAAATTTTGGTGTT+TGG + chr5_1:68424433-68424452 Msa0746270:five_prime_UTR 35.0%
AGTGTGAATCCAAAAGATGT+TGG + chr5_1:68424497-68424516 Msa0746270:five_prime_UTR 35.0%
! AGTTGGATTCCAACATCTTT+TGG - chr5_1:68424509-68424528 None:intergenic 35.0%
CTTAAACAAATGCATGCATG+TGG + chr5_1:68424924-68424943 Msa0746270:five_prime_UTR 35.0%
ATGCATGTGGATTCTGATAT+AGG + chr5_1:68424937-68424956 Msa0746270:five_prime_UTR 35.0%
TCACGATCTTTCTCTGAATT+TGG + chr5_1:68425030-68425049 Msa0746270:five_prime_UTR 35.0%
AGTGAATGAACTTCGAAAGA+AGG + chr5_1:68425152-68425171 Msa0746270:five_prime_UTR 35.0%
AGGATTGTGGATTCTGATAT+AGG + chr5_1:68425172-68425191 Msa0746270:five_prime_UTR 35.0%
GCTTCCAAATCTACAAAAGT+TGG + chr5_1:68425270-68425289 Msa0746270:five_prime_UTR 35.0%
! CCAACCAACTTTTGTAGATT+TGG - chr5_1:68425277-68425296 None:intergenic 35.0%
! CCAAATCTACAAAAGTTGGT+TGG + chr5_1:68425274-68425293 Msa0746270:five_prime_UTR 35.0%
GCTCGATGACATAAAAATTG+AGG + chr5_1:68425348-68425367 Msa0746270:five_prime_UTR 35.0%
ATCAAGCAATTGTAGAAGCA+GGG - chr5_1:68425413-68425432 None:intergenic 35.0%
TGACAATTTGCAATAGTGCA+AGG + chr5_1:68425488-68425507 Msa0746270:intron 35.0%
AGGAAAAAGATTGTTAGCTC+TGG + chr5_1:68425508-68425527 Msa0746270:intron 35.0%
AAACATAGACAAACTAGCAG+AGG + chr5_1:68425540-68425559 Msa0746270:intron 35.0%
AGATTCCATACAACATACTG+CGG - chr5_1:68425621-68425640 None:intergenic 35.0%
AGCTAATATTCTCACAGCAA+TGG - chr5_1:68425875-68425894 None:intergenic 35.0%
AGAAACAATGTGAGTGCAAA+GGG - chr5_1:68426094-68426113 None:intergenic 35.0%
AAGAAACAATGTGAGTGCAA+AGG - chr5_1:68426095-68426114 None:intergenic 35.0%
! TTGCACTCACATTGTTTCTT+TGG + chr5_1:68426095-68426114 Msa0746270:intron 35.0%
TCATGGTTAGCATTCAATGA+AGG + chr5_1:68426236-68426255 Msa0746270:intron 35.0%
! GATAGGGTAATGCTATTTGA+GGG - chr5_1:68426447-68426466 None:intergenic 35.0%
! TGATAGGGTAATGCTATTTG+AGG - chr5_1:68426448-68426467 None:intergenic 35.0%
ATTGTAACTTCGGCAATAGA+GGG - chr5_1:68426510-68426529 None:intergenic 35.0%
AATTGTAACTTCGGCAATAG+AGG - chr5_1:68426511-68426530 None:intergenic 35.0%
! AGTTACAATTTGTTTCTCCC+TGG + chr5_1:68426521-68426540 Msa0746270:intron 35.0%
GTTAGAGAAGCAGTTAATGT+AGG + chr5_1:68426993-68427012 Msa0746270:five_prime_UTR 35.0%
!!! AATCACTCTTTTCTGGTTGA+CGG - chr5_1:68427046-68427065 None:intergenic 35.0%
! TGACTTGAATCACTCTTTTC+TGG - chr5_1:68427053-68427072 None:intergenic 35.0%
AAGAATAATTCGTCAACAGC+GGG + chr5_1:68427427-68427446 Msa0746270:five_prime_UTR 35.0%
AACATACCTTTCTTGGGTTA+TGG - chr5_1:68427505-68427524 None:intergenic 35.0%
TTTGGAAGCAAAATGGTAAG+CGG + chr5_1:68427627-68427646 Msa0746270:five_prime_UTR 35.0%
ATGCTATCTTTGTGGAAGTT+AGG + chr5_1:68427812-68427831 Msa0746270:intron 35.0%
TTCACGAAGATGTAAGTAGA+AGG + chr5_1:68427954-68427973 Msa0746270:five_prime_UTR 35.0%
ACTTGCAAAACAAAAGTCAG+CGG - chr5_1:68428045-68428064 None:intergenic 35.0%
!!! CTGACTTTTGTTTTGCAAGT+AGG + chr5_1:68428045-68428064 Msa0746270:intron 35.0%
! AGTCCAGATATGGATTTTTG+TGG + chr5_1:68428090-68428109 Msa0746270:intron 35.0%
ATACTTTACTTCCACCATTC+TGG - chr5_1:68428455-68428474 None:intergenic 35.0%
CTGATTCTGTAGGTAAAACA+AGG + chr5_1:68428503-68428522 Msa0746270:intron 35.0%
AAATCTCTTGAGGAATCCTT+TGG + chr5_1:68428646-68428665 Msa0746270:CDS 35.0%
! GCCTGCAAAAATGTGATTTT+TGG + chr5_1:68428992-68429011 Msa0746270:intron 35.0%
! CCCAAAAATCACATTTTTGC+AGG - chr5_1:68428996-68429015 None:intergenic 35.0%
GCAAACAAATCAATGAGCAA+TGG + chr5_1:68429134-68429153 Msa0746270:intron 35.0%
!! ATGTCCAATATATAATGGGC+TGG - chr5_1:68429172-68429191 None:intergenic 35.0%
TCAAAATGAAAGCAGAGTCT+TGG + chr5_1:68429220-68429239 Msa0746270:intron 35.0%
GTCTTGGAAAGATTTGGATT+TGG + chr5_1:68429236-68429255 Msa0746270:intron 35.0%
AATTTCTCTATCATGTGTCC+CGG + chr5_1:68429342-68429361 Msa0746270:intron 35.0%
TGGTCAATGTTGAAATTACC+GGG - chr5_1:68429363-68429382 None:intergenic 35.0%
AGGCTGATAAGATTTGTGTT+AGG - chr5_1:68429452-68429471 None:intergenic 35.0%
ACACAAATCTTATCAGCCTT+TGG + chr5_1:68429453-68429472 Msa0746270:intron 35.0%
ACTTAGGAGACAATTTCAAC+TGG + chr5_1:68429582-68429601 Msa0746270:intron 35.0%
TTTATGTCTTCTGCATTGCT+CGG + chr5_1:68429703-68429722 Msa0746270:three_prime_UTR 35.0%
AACCTTCTCAAAATAACCAC+TGG - chr5_1:68429902-68429921 None:intergenic 35.0%
! ATTTTGCAGGATACATAGTG+AGG + chr5_1:68429965-68429984 Msa0746270:intron 35.0%
!!! TCTTTTAACTTATGCCCCAA+GGG - chr5_1:68430219-68430238 None:intergenic 35.0%
TGACTGAATAGGTGACTGTA+AGG - chr5_1:68424210-68424229 None:intergenic 40.0%
GAACAATTAGGACAGTTTGG+AGG - chr5_1:68424290-68424309 None:intergenic 40.0%
GGAGAACAATTAGGACAGTT+TGG - chr5_1:68424293-68424312 None:intergenic 40.0%
! AACTATCAGGATTAGTGGGA+GGG + chr5_1:68424694-68424713 Msa0746270:intron 40.0%
GCAACAATCATATCGAAGAC+TGG + chr5_1:68424787-68424806 Msa0746270:five_prime_UTR 40.0%
GAACTTCGAAAGAAGGATTG+TGG + chr5_1:68425159-68425178 Msa0746270:five_prime_UTR 40.0%
GATCAAGCAATTGTAGAAGC+AGG - chr5_1:68425414-68425433 None:intergenic 40.0%
ACAATTGCTTGATCCAGAAC+AGG + chr5_1:68425420-68425439 Msa0746270:five_prime_UTR 40.0%
CAATTGCTTGATCCAGAACA+GGG + chr5_1:68425421-68425440 Msa0746270:five_prime_UTR 40.0%
TTACCTGAATTTCCCTGTTC+TGG - chr5_1:68425436-68425455 None:intergenic 40.0%
GCAGTATGTTGTATGGAATC+TGG + chr5_1:68425620-68425639 Msa0746270:intron 40.0%
TGCTACTGTTATCATAGGCA+AGG - chr5_1:68425772-68425791 None:intergenic 40.0%
! CATTGTTTCTTTGGAGAGTC+AGG + chr5_1:68426104-68426123 Msa0746270:intron 40.0%
! TACAATTTGTTTCTCCCTGG+TGG + chr5_1:68426524-68426543 Msa0746270:intron 40.0%
TCCTGTCTGGAAACTATTGA+AGG - chr5_1:68426597-68426616 None:intergenic 40.0%
TGAAAGAGTAACATCCTGTC+TGG - chr5_1:68426610-68426629 None:intergenic 40.0%
GATTCTTAATGGCCATGTCA+AGG - chr5_1:68426653-68426672 None:intergenic 40.0%
AACAGAATCGAAATCTGAGC+AGG + chr5_1:68426749-68426768 Msa0746270:five_prime_UTR 40.0%
ATCTGAGCAGGTTATCAACA+AGG + chr5_1:68426761-68426780 Msa0746270:five_prime_UTR 40.0%
ATCACTTTGACCTACAGACT+GGG - chr5_1:68426793-68426812 None:intergenic 40.0%
AATCACTTTGACCTACAGAC+TGG - chr5_1:68426794-68426813 None:intergenic 40.0%
CATGCAGAGGTTTCTTTATC+TGG + chr5_1:68426840-68426859 Msa0746270:five_prime_UTR 40.0%
AACAATGCCATCTGATTCAG+TGG - chr5_1:68426976-68426995 None:intergenic 40.0%
!! CATCTTCGAGGCATCAATTT+TGG - chr5_1:68427087-68427106 None:intergenic 40.0%
GTTGCTTGAATTCATCTTCG+AGG - chr5_1:68427099-68427118 None:intergenic 40.0%
!! AACAGCTTTGGAGTGTCATT+TGG + chr5_1:68427142-68427161 Msa0746270:five_prime_UTR 40.0%
CTCTGCATCTTTCATCAATG+TGG - chr5_1:68427353-68427372 None:intergenic 40.0%
TTTCTTGGGTTATGGATCTC+TGG - chr5_1:68427497-68427516 None:intergenic 40.0%
AGAGATCCATAACCCAAGAA+AGG + chr5_1:68427496-68427515 Msa0746270:five_prime_UTR 40.0%
ATTTGATGCTGTTCGTGATG+TGG - chr5_1:68427593-68427612 None:intergenic 40.0%
! TCGTTACTTTGCTAGAACCT+GGG - chr5_1:68427659-68427678 None:intergenic 40.0%
! TTCGTTACTTTGCTAGAACC+TGG - chr5_1:68427660-68427679 None:intergenic 40.0%
! AGGTTCTAGCAAAGTAACGA+AGG + chr5_1:68427659-68427678 Msa0746270:five_prime_UTR 40.0%
CTGCAAAGATGCTATCTTTG+TGG + chr5_1:68427804-68427823 Msa0746270:intron 40.0%
CGAAGATGTAAGTAGAAGGA+AGG + chr5_1:68427958-68427977 Msa0746270:five_prime_UTR 40.0%
CAGCCACAAAAATCCATATC+TGG - chr5_1:68428096-68428115 None:intergenic 40.0%
! CAGATATGGATTTTTGTGGC+TGG + chr5_1:68428094-68428113 Msa0746270:intron 40.0%
GAGAAAAAGTTGCCATGTTC+TGG - chr5_1:68428333-68428352 None:intergenic 40.0%
CAAGGCTCAAGTATGAAATG+AGG + chr5_1:68428521-68428540 Msa0746270:CDS 40.0%
AATGAGGTTCTACCAAGAGA+TGG + chr5_1:68428537-68428556 Msa0746270:CDS 40.0%
TTTGATGCACAACCATCTCT+TGG - chr5_1:68428552-68428571 None:intergenic 40.0%
TTTCTCGGTCACTATACCAA+AGG - chr5_1:68428665-68428684 None:intergenic 40.0%
!! CATGGTTTTACGCAGTTTCT+CGG - chr5_1:68428680-68428699 None:intergenic 40.0%
!! TTTGTGGACAATCAAGTTGG+AGG + chr5_1:68428844-68428863 Msa0746270:intron 40.0%
!! ATCAAGTTGGAGGTAGGATA+TGG + chr5_1:68428854-68428873 Msa0746270:intron 40.0%
TCAGAGTGGAGGAGATTAAT+GGG - chr5_1:68429019-68429038 None:intergenic 40.0%
! TACTTTGAAAGTCAGAGTGG+AGG - chr5_1:68429030-68429049 None:intergenic 40.0%
! GTCTACTTTGAAAGTCAGAG+TGG - chr5_1:68429033-68429052 None:intergenic 40.0%
AATGAGCAATGGTAAAGAGC+TGG + chr5_1:68429145-68429164 Msa0746270:intron 40.0%
TGGTCCAGCCCATTATATAT+TGG + chr5_1:68429165-68429184 Msa0746270:intron 40.0%
AGCAGAGTCTTGGAAAGATT+TGG + chr5_1:68429230-68429249 Msa0746270:intron 40.0%
GTAAAAAGTTCCCTCCCATT+GGG + chr5_1:68429633-68429652 Msa0746270:CDS 40.0%
TGAAATAACACCCAATGGGA+GGG - chr5_1:68429646-68429665 None:intergenic 40.0%
ATGAAATAACACCCAATGGG+AGG - chr5_1:68429647-68429666 None:intergenic 40.0%
! TTTCAGCCTTGTCGTCAAAT+CGG + chr5_1:68429764-68429783 Msa0746270:three_prime_UTR 40.0%
TGCATCTGTGTAGATGTAGT+TGG + chr5_1:68429800-68429819 Msa0746270:three_prime_UTR 40.0%
ATCTGTGTAGATGTAGTTGG+AGG + chr5_1:68429803-68429822 Msa0746270:three_prime_UTR 40.0%
TGTTGGGGATCGATGTTATT+TGG + chr5_1:68429828-68429847 Msa0746270:three_prime_UTR 40.0%
!!! CACCAGTGGTTATTTTGAGA+AGG + chr5_1:68429897-68429916 Msa0746270:three_prime_UTR 40.0%
TTGAGAAGGTTGTCCTATGT+TGG + chr5_1:68429911-68429930 Msa0746270:three_prime_UTR 40.0%
! AAATGCTAACTTGTGCCCTT+GGG + chr5_1:68430201-68430220 Msa0746270:three_prime_UTR 40.0%
!!! GTCTTTTAACTTATGCCCCA+AGG - chr5_1:68430220-68430239 None:intergenic 40.0%
! AGTTGCTGCTGCTTCTGAAT+GGG + chr5_1:68424017-68424036 Msa0746270:five_prime_UTR 45.0%
!! AAAGATGGGTTGAGAGACAC+AGG - chr5_1:68424075-68424094 None:intergenic 45.0%
AGGCTGAATAGGTGACTGTA+AGG - chr5_1:68424252-68424271 None:intergenic 45.0%
GTTGAATCCCGGTGAGATAA+TGG + chr5_1:68424335-68424354 Msa0746270:five_prime_UTR 45.0%
! CAACTATCAGGATTAGTGGG+AGG + chr5_1:68424693-68424712 Msa0746270:intron 45.0%
GTGGGAGGGAAGATGAAATA+TGG + chr5_1:68424708-68424727 Msa0746270:five_prime_UTR 45.0%
GATCCAGAACAGGGAAATTC+AGG + chr5_1:68425430-68425449 Msa0746270:five_prime_UTR 45.0%
CATACTGCGGAACCTATTTG+TGG - chr5_1:68425608-68425627 None:intergenic 45.0%
AGGTTCCGCAGTATGTTGTA+TGG + chr5_1:68425613-68425632 Msa0746270:intron 45.0%
! GTGCGTGCTACTGTTATCAT+AGG - chr5_1:68425777-68425796 None:intergenic 45.0%
! GCTTAACTTGACCCTGACAT+AGG + chr5_1:68425996-68426015 Msa0746270:intron 45.0%
! GTTTCTTTGGAGAGTCAGGT+TGG + chr5_1:68426108-68426127 Msa0746270:intron 45.0%
!!! AGTCAGGTTGGAGGTTTTTG+AGG + chr5_1:68426120-68426139 Msa0746270:intron 45.0%
CATGGCAACTAAAGAAGACC+TGG + chr5_1:68426568-68426587 Msa0746270:five_prime_UTR 45.0%
GCCTTCAATAGTTTCCAGAC+AGG + chr5_1:68426593-68426612 Msa0746270:five_prime_UTR 45.0%
! TTCCTCTGAGAACCTTGACA+TGG + chr5_1:68426638-68426657 Msa0746270:five_prime_UTR 45.0%
! AAGGTATCTTCCCAGTCTGT+AGG + chr5_1:68426780-68426799 Msa0746270:five_prime_UTR 45.0%
TGATTCAGTGGTATGAGGTG+GGG - chr5_1:68426964-68426983 None:intergenic 45.0%
CTGATTCAGTGGTATGAGGT+GGG - chr5_1:68426965-68426984 None:intergenic 45.0%
TCTGATTCAGTGGTATGAGG+TGG - chr5_1:68426966-68426985 None:intergenic 45.0%
CCATCTGATTCAGTGGTATG+AGG - chr5_1:68426969-68426988 None:intergenic 45.0%
CCTCATACCACTGAATCAGA+TGG + chr5_1:68426966-68426985 Msa0746270:five_prime_UTR 45.0%
GCTGAAACTCCTATTCTGCA+AGG + chr5_1:68427244-68427263 Msa0746270:intron 45.0%
TCCAAATTCCGATCATGACC+AGG + chr5_1:68427870-68427889 Msa0746270:intron 45.0%
CCAAATTCCGATCATGACCA+GGG + chr5_1:68427871-68427890 Msa0746270:intron 45.0%
! ATCTAAAACAATGCCCTCCC+TGG - chr5_1:68427891-68427910 None:intergenic 45.0%
TTAGATGCTACACCAAGTGC+AGG + chr5_1:68427905-68427924 Msa0746270:five_prime_UTR 45.0%
AAGGCCATGTTTCCTGAAAC+TGG + chr5_1:68427977-68427996 Msa0746270:five_prime_UTR 45.0%
CATGCCAGTTTCAGGAAACA+TGG - chr5_1:68427984-68428003 None:intergenic 45.0%
TTTGCTGACATGCCAGTTTC+AGG - chr5_1:68427992-68428011 None:intergenic 45.0%
CTCACCTTACAACCAGAACA+TGG + chr5_1:68428318-68428337 Msa0746270:intron 45.0%
! GTTGCCATGTTCTGGTTGTA+AGG - chr5_1:68428325-68428344 None:intergenic 45.0%
GTTTGATGTCAACCAGTTGC+AGG + chr5_1:68428420-68428439 Msa0746270:intron 45.0%
TTACTTCCACCATTCTGGCA+TGG - chr5_1:68428450-68428469 None:intergenic 45.0%
CGAGAAACTGCGTAAAACCA+TGG + chr5_1:68428678-68428697 Msa0746270:CDS 45.0%
GAAACTGCGTAAAACCATGG+AGG + chr5_1:68428681-68428700 Msa0746270:CDS 45.0%
CACAATGTGATTCTCCTCCA+TGG - chr5_1:68428698-68428717 None:intergenic 45.0%
TGGAGGAGAATCACATTGTG+AGG + chr5_1:68428698-68428717 Msa0746270:CDS 45.0%
AGGAGAATCACATTGTGAGG+CGG + chr5_1:68428701-68428720 Msa0746270:CDS 45.0%
!! TGGACAATCAAGTTGGAGGT+AGG + chr5_1:68428848-68428867 Msa0746270:intron 45.0%
GTCAGAGTGGAGGAGATTAA+TGG - chr5_1:68429020-68429039 None:intergenic 45.0%
ACACTGCAAAACAACACCTC+TGG - chr5_1:68429199-68429218 None:intergenic 45.0%
! CCACTGCTCTATTTTGCAGA+AGG - chr5_1:68429614-68429633 None:intergenic 45.0%
CCTTCTGCAAAATAGAGCAG+TGG + chr5_1:68429611-68429630 Msa0746270:CDS 45.0%
GGTAAAAAGTTCCCTCCCAT+TGG + chr5_1:68429632-68429651 Msa0746270:CDS 45.0%
GGTTGCATACCATGTTCAGA+TGG + chr5_1:68429730-68429749 Msa0746270:three_prime_UTR 45.0%
TACCATGTTCAGATGGCAAC+TGG + chr5_1:68429737-68429756 Msa0746270:three_prime_UTR 45.0%
! AGATGTAGTTGGAGGCATGT+TGG + chr5_1:68429811-68429830 Msa0746270:three_prime_UTR 45.0%
! GATGTAGTTGGAGGCATGTT+GGG + chr5_1:68429812-68429831 Msa0746270:three_prime_UTR 45.0%
! ATGTAGTTGGAGGCATGTTG+GGG + chr5_1:68429813-68429832 Msa0746270:three_prime_UTR 45.0%
! GGGATCGATGTTATTTGGTC+TGG + chr5_1:68429833-68429852 Msa0746270:three_prime_UTR 45.0%
ATCATCCGGCAATACTGTGA+TGG + chr5_1:68430131-68430150 Msa0746270:three_prime_UTR 45.0%
TCATCCGGCAATACTGTGAT+GGG + chr5_1:68430132-68430151 Msa0746270:three_prime_UTR 45.0%
! GAAATGCTAACTTGTGCCCT+TGG + chr5_1:68430200-68430219 Msa0746270:three_prime_UTR 45.0%
! AATGCTAACTTGTGCCCTTG+GGG + chr5_1:68430202-68430221 Msa0746270:three_prime_UTR 45.0%
! CAGTTGCTGCTGCTTCTGAA+TGG + chr5_1:68424016-68424035 Msa0746270:five_prime_UTR 50.0%
!! TCTTTGGAGAGTCAGGTTGG+AGG + chr5_1:68426111-68426130 Msa0746270:intron 50.0%
GGCAACTAAAGAAGACCTGG+AGG + chr5_1:68426571-68426590 Msa0746270:five_prime_UTR 50.0%
GGAAACTATTGAAGGCCTCC+AGG - chr5_1:68426589-68426608 None:intergenic 50.0%
AATCTCAGAGCAGCATGCAG+AGG + chr5_1:68426827-68426846 Msa0746270:five_prime_UTR 50.0%
GTCATTTGGCTACAGCAAGC+AGG + chr5_1:68427156-68427175 Msa0746270:five_prime_UTR 50.0%
! TCTTTTCTGCCAAGCAACGC+TGG - chr5_1:68427690-68427709 None:intergenic 50.0%
CCCTGGTCATGATCGGAATT+TGG - chr5_1:68427874-68427893 None:intergenic 50.0%
AATTCCGATCATGACCAGGG+AGG + chr5_1:68427874-68427893 Msa0746270:intron 50.0%
ATTCCGATCATGACCAGGGA+GGG + chr5_1:68427875-68427894 Msa0746270:intron 50.0%
TACACCAAGTGCAGGCAAGT+TGG + chr5_1:68427913-68427932 Msa0746270:five_prime_UTR 50.0%
TGCTAACTCATCGCACGCAT+GGG - chr5_1:68428193-68428212 None:intergenic 50.0%
TTGCTAACTCATCGCACGCA+TGG - chr5_1:68428194-68428213 None:intergenic 50.0%
TGGCATGGTTAACCTGCAAC+TGG - chr5_1:68428435-68428454 None:intergenic 50.0%
GCAGGTTAACCATGCCAGAA+TGG + chr5_1:68428438-68428457 Msa0746270:intron 50.0%
GGTTAACCATGCCAGAATGG+TGG + chr5_1:68428441-68428460 Msa0746270:intron 50.0%
GTTGCAACTCTCGACACGTA+TGG - chr5_1:68429383-68429402 None:intergenic 50.0%
CACCAGTTGCCATCTGAACA+TGG - chr5_1:68429742-68429761 None:intergenic 50.0%
CCACTGGTGTGCAACATTCT+AGG - chr5_1:68429886-68429905 None:intergenic 50.0%
CCTAGAATGTTGCACACCAG+TGG + chr5_1:68429883-68429902 Msa0746270:three_prime_UTR 50.0%
CATCCGGCAATACTGTGATG+GGG + chr5_1:68430133-68430152 Msa0746270:three_prime_UTR 50.0%
CTTCCCCATCACAGTATTGC+CGG - chr5_1:68430139-68430158 None:intergenic 50.0%
! ATACTGTGATGGGGAAGCAC+TGG + chr5_1:68430142-68430161 Msa0746270:three_prime_UTR 50.0%
AGCAAGCGCAGAGGCTGAAT+AGG - chr5_1:68424263-68424282 None:intergenic 55.0%
TATTCAGCCTCTGCGCTTGC+TGG + chr5_1:68424262-68424281 Msa0746270:five_prime_UTR 55.0%
! AGAGCTGTCGATTGCCACCA+GGG - chr5_1:68426541-68426560 None:intergenic 55.0%
! AAGAGCTGTCGATTGCCACC+AGG - chr5_1:68426542-68426561 None:intergenic 55.0%
GGTGGCAATCGACAGCTCTT+CGG + chr5_1:68426542-68426561 Msa0746270:intron 55.0%
TCGACAGCTCTTCGGATGCA+TGG + chr5_1:68426550-68426569 Msa0746270:intron 55.0%
GGCCATGTCAAGGTTCTCAG+AGG - chr5_1:68426643-68426662 None:intergenic 55.0%
TCCTATTCTGCAAGGCAGCG+AGG + chr5_1:68427252-68427271 Msa0746270:intron 55.0%
TCCTCGCTGCCTTGCAGAAT+AGG - chr5_1:68427256-68427275 None:intergenic 55.0%
GCAAGGCAGCGAGGACATAA+TGG + chr5_1:68427261-68427280 Msa0746270:intron 55.0%
ATGGTAAGCGGTTCACTCCC+AGG + chr5_1:68427639-68427658 Msa0746270:five_prime_UTR 55.0%
AAGGATGCACCAGCGTTGCT+TGG + chr5_1:68427678-68427697 Msa0746270:five_prime_UTR 55.0%
ATGCCCTCCCTGGTCATGAT+CGG - chr5_1:68427881-68427900 None:intergenic 55.0%
TCTTCTGCATTGCTCGGCTG+TGG + chr5_1:68429709-68429728 Msa0746270:three_prime_UTR 55.0%
! CCAGCTCCGATTTGACGACA+AGG - chr5_1:68429773-68429792 None:intergenic 55.0%
CCTTGTCGTCAAATCGGAGC+TGG + chr5_1:68429770-68429789 Msa0746270:three_prime_UTR 55.0%
CCAGCCAACTTGCCTGCACT+TGG - chr5_1:68427920-68427939 None:intergenic 60.0%
! CCAAGTGCAGGCAAGTTGGC+TGG + chr5_1:68427917-68427936 Msa0746270:five_prime_UTR 60.0%
GGAGGAACCAGCAAGCGCAG+AGG - chr5_1:68424272-68424291 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 68423949 68430418 68423949 ID=Msa0746270;Name=Msa0746270
chr5_1 mRNA 68423949 68430418 68423949 ID=Msa0746270-mRNA-1;Parent=Msa0746270;Name=Msa0746270-mRNA-1;_AED=0.22;_eAED=0.22;_QI=2238|1|1|1|0.33|0.4|10|546|121
chr5_1 exon 68423949 68424119 68423949 ID=Msa0746270-mRNA-1:exon:20387;Parent=Msa0746270-mRNA-1
chr5_1 exon 68424257 68424555 68424257 ID=Msa0746270-mRNA-1:exon:20388;Parent=Msa0746270-mRNA-1
chr5_1 exon 68424703 68425451 68424703 ID=Msa0746270-mRNA-1:exon:20389;Parent=Msa0746270-mRNA-1
chr5_1 exon 68426557 68427177 68426557 ID=Msa0746270-mRNA-1:exon:20390;Parent=Msa0746270-mRNA-1
chr5_1 exon 68427371 68427517 68427371 ID=Msa0746270-mRNA-1:exon:20391;Parent=Msa0746270-mRNA-1
chr5_1 exon 68427605 68427733 68427605 ID=Msa0746270-mRNA-1:exon:20392;Parent=Msa0746270-mRNA-1
chr5_1 exon 68427892 68428029 68427892 ID=Msa0746270-mRNA-1:exon:20393;Parent=Msa0746270-mRNA-1
chr5_1 exon 68428515 68428759 68428515 ID=Msa0746270-mRNA-1:exon:20394;Parent=Msa0746270-mRNA-1
chr5_1 exon 68429588 68429950 68429588 ID=Msa0746270-mRNA-1:exon:20395;Parent=Msa0746270-mRNA-1
chr5_1 exon 68430131 68430418 68430131 ID=Msa0746270-mRNA-1:exon:20396;Parent=Msa0746270-mRNA-1
chr5_1 five_prime_UTR 68423949 68424119 68423949 ID=Msa0746270-mRNA-1:five_prime_utr;Parent=Msa0746270-mRNA-1
chr5_1 five_prime_UTR 68424257 68424555 68424257 ID=Msa0746270-mRNA-1:five_prime_utr;Parent=Msa0746270-mRNA-1
chr5_1 five_prime_UTR 68424703 68425451 68424703 ID=Msa0746270-mRNA-1:five_prime_utr;Parent=Msa0746270-mRNA-1
chr5_1 five_prime_UTR 68426557 68427177 68426557 ID=Msa0746270-mRNA-1:five_prime_utr;Parent=Msa0746270-mRNA-1
chr5_1 five_prime_UTR 68427371 68427517 68427371 ID=Msa0746270-mRNA-1:five_prime_utr;Parent=Msa0746270-mRNA-1
chr5_1 five_prime_UTR 68427605 68427733 68427605 ID=Msa0746270-mRNA-1:five_prime_utr;Parent=Msa0746270-mRNA-1
chr5_1 five_prime_UTR 68427892 68428013 68427892 ID=Msa0746270-mRNA-1:five_prime_utr;Parent=Msa0746270-mRNA-1
chr5_1 CDS 68428014 68428029 68428014 ID=Msa0746270-mRNA-1:cds;Parent=Msa0746270-mRNA-1
chr5_1 CDS 68428515 68428759 68428515 ID=Msa0746270-mRNA-1:cds;Parent=Msa0746270-mRNA-1
chr5_1 CDS 68429588 68429692 68429588 ID=Msa0746270-mRNA-1:cds;Parent=Msa0746270-mRNA-1
chr5_1 three_prime_UTR 68429693 68429950 68429693 ID=Msa0746270-mRNA-1:three_prime_utr;Parent=Msa0746270-mRNA-1
chr5_1 three_prime_UTR 68430131 68430418 68430131 ID=Msa0746270-mRNA-1:three_prime_utr;Parent=Msa0746270-mRNA-1
Gene Sequence

>Msa0746270

ATGTTAATATTTCGAGGTAAAACAAGGCTCAAGTATGAAATGAGGTTCTACCAAGAGATGGTTGTGCATCAAATTCGACAAATGAGTGAGCACAACCAGCAACTTCTTTATTTGAAGAACAAGATGGTCAAAGAGAAGAAACATTCAAAATCTCTTGAGGAATCCTTTGGTATAGTGACCGAGAAACTGCGTAAAACCATGGAGGAGAATCACATTGTGAGGCGGAGAACAAAAATGCAGCATGAAGAAATAAAAGAAGAGGAGACAATTTCAACTGGTTTATTCCTTCTGCAAAATAGAGCAGTGGTAAAAAGTTCCCTCCCATTGGGTGTTATTTCATTACAAAAAATTGAGATCCGTTCATAG
Protein sequence

>Msa0746270

MLIFRGKTRLKYEMRFYQEMVVHQIRQMSEHNQQLLYLKNKMVKEKKHSKSLEESFGIVTEKLRKTMEENHIVRRRTKMQHEEIKEEETISTGLFLLQNRAVVKSSLPLGVISLQKIEIRS*