Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746360 | XP_039688857.1 | 89.677 | 310 | 23 | 6 | 1 | 305 | 1 | 306 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746360 | sp|Q9SW11|PUB35_ARATH | 29.299 | 157 | 105 | 2 | 94 | 249 | 22 | 173 | 1.95e-14 | 77.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746360 | G7ZZT9 | 89.677 | 310 | 23 | 6 | 1 | 305 | 8 | 313 | 0.0 | 530 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0746360 | Msa1224530 | 0.964081 | 7.028642e-123 | -8.615850e-47 |
| Msa0746360 | Msa1333780 | 0.920055 | 2.076290e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746360 | MtrunA17_Chr4g0076471 | 89.677 | 310 | 23 | 6 | 1 | 305 | 8 | 313 | 0.0 | 530 |
| Msa0746360 | MtrunA17_Chr4g0076451 | 48.588 | 177 | 82 | 5 | 92 | 261 | 50 | 224 | 4.93e-42 | 145 |
| Msa0746360 | MtrunA17_Chr4g0058581 | 36.957 | 184 | 101 | 6 | 85 | 265 | 109 | 280 | 2.53e-29 | 113 |
| Msa0746360 | MtrunA17_Chr4g0070941 | 30.052 | 193 | 122 | 8 | 94 | 281 | 7 | 191 | 4.01e-17 | 82.0 |
| Msa0746360 | MtrunA17_Chr2g0328101 | 31.677 | 161 | 101 | 4 | 92 | 251 | 31 | 183 | 7.69e-17 | 80.9 |
| Msa0746360 | MtrunA17_Chr3g0079031 | 29.050 | 179 | 117 | 4 | 85 | 259 | 9 | 181 | 6.63e-12 | 66.2 |
| Msa0746360 | MtrunA17_Chr3g0079051 | 26.875 | 160 | 112 | 3 | 94 | 252 | 24 | 179 | 3.28e-11 | 63.9 |
| Msa0746360 | MtrunA17_Chr7g0247831 | 24.224 | 161 | 118 | 2 | 88 | 248 | 48 | 204 | 3.56e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746360 | AT5G47740.1 | 43.415 | 205 | 104 | 7 | 62 | 263 | 21 | 216 | 3.03e-46 | 156 |
| Msa0746360 | AT5G47740.2 | 42.995 | 207 | 104 | 8 | 62 | 263 | 21 | 218 | 2.44e-44 | 151 |
| Msa0746360 | AT2G19410.2 | 28.652 | 178 | 117 | 5 | 100 | 270 | 37 | 211 | 5.92e-16 | 79.0 |
| Msa0746360 | AT4G25160.1 | 29.299 | 157 | 105 | 2 | 94 | 249 | 22 | 173 | 1.98e-15 | 77.4 |
| Msa0746360 | AT2G45910.2 | 26.708 | 161 | 114 | 2 | 88 | 248 | 43 | 199 | 5.46e-14 | 72.8 |
| Msa0746360 | AT2G45910.1 | 26.708 | 161 | 114 | 2 | 88 | 248 | 43 | 199 | 5.46e-14 | 72.8 |
| Msa0746360 | AT5G51270.2 | 28.662 | 157 | 105 | 2 | 94 | 248 | 34 | 185 | 2.41e-11 | 64.7 |
| Msa0746360 | AT5G51270.1 | 28.662 | 157 | 105 | 2 | 94 | 248 | 34 | 185 | 2.41e-11 | 64.7 |
| Msa0746360 | AT5G65500.2 | 30.055 | 183 | 123 | 4 | 72 | 251 | 2 | 182 | 3.02e-11 | 64.7 |
| Msa0746360 | AT5G65500.1 | 30.601 | 183 | 120 | 5 | 72 | 251 | 2 | 180 | 8.80e-11 | 63.2 |
| Msa0746360 | AT3G61410.2 | 22.360 | 161 | 121 | 3 | 88 | 248 | 10 | 166 | 9.50e-11 | 62.0 |
Find 65 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAATAACCATGATAAAT+TGG | 0.121575 | 5_1:-68481793 | None:intergenic |
| TGTGGAACTGCTACTGTTTC+TGG | 0.142547 | 5_1:-68481718 | None:intergenic |
| CCAATTTATCATGGTTATTT+AGG | 0.173104 | 5_1:+68481793 | Msa0746360:CDS |
| TGTATATACAAGAATAATTT+TGG | 0.184647 | 5_1:+68481854 | Msa0746360:three_prime_UTR |
| AAAGCTTGAGTGGGACAAAA+TGG | 0.270855 | 5_1:-68481764 | None:intergenic |
| CAAGTGTTTGATTACAATTT+CGG | 0.312597 | 5_1:+68479089 | Msa0746360:CDS |
| GTGATCGACCAGATGATTAA+TGG | 0.319312 | 5_1:+68481672 | Msa0746360:CDS |
| GTTACCTTAGATTATTAGAT+TGG | 0.320558 | 5_1:-68481457 | None:intergenic |
| CTACCCAATCTAATAATCTA+AGG | 0.338317 | 5_1:+68481453 | Msa0746360:CDS |
| GAATCTAAATATAAGGAAAT+TGG | 0.342523 | 5_1:+68481421 | Msa0746360:CDS |
| TTTGAAGAAGGAAAGTAGAT+TGG | 0.355768 | 5_1:+68479154 | Msa0746360:CDS |
| TTGTAGGGAATCTAAATATA+AGG | 0.359391 | 5_1:+68481414 | Msa0746360:CDS |
| CAAGCATGGAAGCACTTTCA+TGG | 0.384069 | 5_1:+68479297 | Msa0746360:CDS |
| TGTAACCAAGTGATTGAGAT+TGG | 0.384205 | 5_1:+68481888 | Msa0746360:three_prime_UTR |
| AATAAAACCACAACCACAAC+TGG | 0.394819 | 5_1:-68479051 | None:intergenic |
| TCTTGAATATCATGCTTAGT+TGG | 0.411358 | 5_1:-68478993 | None:intergenic |
| AAGTGGACCCATTAATCATC+TGG | 0.419370 | 5_1:-68481680 | None:intergenic |
| CTAAATAACCATGATAAATT+GGG | 0.423603 | 5_1:-68481792 | None:intergenic |
| TTGGAATTAGCTTGACTTGA+GGG | 0.423894 | 5_1:-68479376 | None:intergenic |
| GCAAAATTCCATTGCGGACA+TGG | 0.426337 | 5_1:+68481593 | Msa0746360:CDS |
| AGAGAAACAGTAGTTGTAGA+AGG | 0.431084 | 5_1:-68479341 | None:intergenic |
| GAAATCTCCAGTTGTGGTTG+TGG | 0.445667 | 5_1:+68479044 | Msa0746360:CDS |
| TGATCGACCAGATGATTAAT+GGG | 0.456946 | 5_1:+68481673 | Msa0746360:CDS |
| AATATAAGGAAATTGGTGAT+TGG | 0.458551 | 5_1:+68481428 | Msa0746360:CDS |
| GTTTGAGATAAATTTGAAGA+AGG | 0.464932 | 5_1:+68479142 | Msa0746360:CDS |
| GAAGCCATTGTGGACCTTGT+AGG | 0.467590 | 5_1:+68481398 | Msa0746360:CDS |
| TCTGTAATATTCACTCATCT+TGG | 0.476127 | 5_1:-68481831 | None:intergenic |
| AGGTGTCACGGCATGTTTCA+AGG | 0.477649 | 5_1:-68479321 | None:intergenic |
| TTACCTTAGATTATTAGATT+GGG | 0.480669 | 5_1:-68481456 | None:intergenic |
| GGTAGAAACGATGCTTATTG+AGG | 0.487398 | 5_1:+68481361 | Msa0746360:CDS |
| TGAGAGTACTTACATGGAGT+TGG | 0.499850 | 5_1:-68479395 | None:intergenic |
| AAGCTTGAGTGGGACAAAAT+GGG | 0.501117 | 5_1:-68481763 | None:intergenic |
| TTATATTTAGATTCCCTACA+AGG | 0.503404 | 5_1:-68481412 | None:intergenic |
| AAGCCATTGTGGACCTTGTA+GGG | 0.505067 | 5_1:+68481399 | Msa0746360:CDS |
| TATAGATGATGTTGTTTATG+TGG | 0.505857 | 5_1:+68479250 | Msa0746360:CDS |
| GAAGCTATGTATTGAATCAA+AGG | 0.507814 | 5_1:+68481225 | Msa0746360:CDS |
| GTAGAAACGATGCTTATTGA+GGG | 0.508850 | 5_1:+68481362 | Msa0746360:CDS |
| AATTTCGGAGACGACGATGA+TGG | 0.516786 | 5_1:+68479104 | Msa0746360:CDS |
| CGAAATTGTAATCAAACACT+TGG | 0.523720 | 5_1:-68479088 | None:intergenic |
| CTCTACTTGATGAGAAATTG+TGG | 0.527299 | 5_1:-68481736 | None:intergenic |
| ATTGGATTCAATAAGAGAAG+AGG | 0.530259 | 5_1:+68479172 | Msa0746360:CDS |
| ATTACAGGTGTTGGCTGTGA+TGG | 0.533973 | 5_1:-68481974 | None:intergenic |
| CACAATTTCTCATCAAGTAG+AGG | 0.536462 | 5_1:+68481737 | Msa0746360:CDS |
| TCTAGATTTACACGACTCCT+TGG | 0.549421 | 5_1:-68481139 | None:intergenic |
| GATATCCAATCTCAATCACT+TGG | 0.550413 | 5_1:-68481893 | None:intergenic |
| TATGTGGCAGTGGGAACAAA+TGG | 0.556548 | 5_1:+68479266 | Msa0746360:CDS |
| TGATGTTGTTTATGTGGCAG+TGG | 0.557388 | 5_1:+68479256 | Msa0746360:CDS |
| AAATAGTAGGAAAGATTCCA+AGG | 0.561559 | 5_1:+68481122 | Msa0746360:intron |
| TTTGAACACCATGTCCGCAA+TGG | 0.562956 | 5_1:-68481601 | None:intergenic |
| ATAGCTTCATGAATTTCTGA+AGG | 0.578929 | 5_1:-68481210 | None:intergenic |
| TTGGGCATCAAAAGCTTGAG+TGG | 0.580087 | 5_1:-68481774 | None:intergenic |
| CAACGTTGCTGAAGCCATTG+TGG | 0.592251 | 5_1:+68481388 | Msa0746360:CDS |
| AAATGGTGGAAGTTCAAGCA+TGG | 0.604604 | 5_1:+68479283 | Msa0746360:CDS |
| TGACTTGAGGGAAAACGTGT+AGG | 0.617086 | 5_1:-68479364 | None:intergenic |
| TGGGCATCAAAAGCTTGAGT+GGG | 0.620582 | 5_1:-68481773 | None:intergenic |
| TGACCCAAGTGAAAAGCAAG+AGG | 0.622721 | 5_1:+68481179 | Msa0746360:CDS |
| GTTGGAATTAGCTTGACTTG+AGG | 0.628301 | 5_1:-68479377 | None:intergenic |
| GATGTTGTTTATGTGGCAGT+GGG | 0.642705 | 5_1:+68479257 | Msa0746360:CDS |
| AGTAGTTGTAGAAGGTGTCA+CGG | 0.650946 | 5_1:-68479333 | None:intergenic |
| ATTCAATAAGAGAAGAGGAG+TGG | 0.652515 | 5_1:+68479177 | Msa0746360:CDS |
| ATTCCCTACAAGGTCCACAA+TGG | 0.658292 | 5_1:-68481402 | None:intergenic |
| GTGGCAGTGGGAACAAATGG+TGG | 0.662195 | 5_1:+68479269 | Msa0746360:CDS |
| GATGTGAAAATCATATGTGA+AGG | 0.682874 | 5_1:+68481642 | Msa0746360:CDS |
| GATGATGAAATCTCCAGTTG+TGG | 0.697511 | 5_1:+68479038 | Msa0746360:CDS |
| AGGAAAGCAAAATTCCATTG+CGG | 0.715974 | 5_1:+68481587 | Msa0746360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATAAAATAAATAAA+AGG | + | chr5_1:68480210-68480229 | Msa0746360:intron | 0.0% |
| !!! | TTATTAAAATTAAAAGTGTT+TGG | + | chr5_1:68479756-68479775 | Msa0746360:intron | 10.0% |
| !! | TAAATATAAAATGACATAAA+AGG | + | chr5_1:68479804-68479823 | Msa0746360:intron | 10.0% |
| !! | ATTATTTATCATATGAATTA+AGG | + | chr5_1:68480036-68480055 | Msa0746360:intron | 10.0% |
| !! | TTATTTATCATATGAATTAA+GGG | + | chr5_1:68480037-68480056 | Msa0746360:intron | 10.0% |
| !! | AATAAATAAAAGGTTAAAAT+TGG | + | chr5_1:68480220-68480239 | Msa0746360:intron | 10.0% |
| !!! | ATTCTTTTTTAATTTTTTCT+TGG | - | chr5_1:68480840-68480859 | None:intergenic | 10.0% |
| !!! | ATTACAAACAATTTTTTTTT+TGG | - | chr5_1:68481082-68481101 | None:intergenic | 10.0% |
| !! | TTTCATAATCTTAAACAATT+TGG | + | chr5_1:68479432-68479451 | Msa0746360:intron | 15.0% |
| !! | TTCATAATCTTAAACAATTT+GGG | + | chr5_1:68479433-68479452 | Msa0746360:intron | 15.0% |
| !! | TGATCAATATAATATATTGT+TGG | + | chr5_1:68479607-68479626 | Msa0746360:intron | 15.0% |
| !!! | TAATATATTGTTGGATTTTA+AGG | + | chr5_1:68479616-68479635 | Msa0746360:intron | 15.0% |
| !!! | AATATATTGTTGGATTTTAA+GGG | + | chr5_1:68479617-68479636 | Msa0746360:intron | 15.0% |
| !!! | ATCTAATTAATTTTTCTCAA+GGG | - | chr5_1:68480634-68480653 | None:intergenic | 15.0% |
| !!! | TATCTAATTAATTTTTCTCA+AGG | - | chr5_1:68480635-68480654 | None:intergenic | 15.0% |
| !! | ACTCCAAATAAATATTATTT+GGG | - | chr5_1:68480931-68480950 | None:intergenic | 15.0% |
| !! | AACTCCAAATAAATATTATT+TGG | - | chr5_1:68480932-68480951 | None:intergenic | 15.0% |
| !!! | TGTATATACAAGAATAATTT+TGG | + | chr5_1:68481854-68481873 | Msa0746360:three_prime_UTR | 15.0% |
| !! | GATTATTTAAATTGTGACTA+TGG | - | chr5_1:68479459-68479478 | None:intergenic | 20.0% |
| !! | TTTAATTGTACTTGATTACT+AGG | + | chr5_1:68479533-68479552 | Msa0746360:intron | 20.0% |
| !!! | TTGGGATTTTTTATATTCAA+AGG | + | chr5_1:68479572-68479591 | Msa0746360:intron | 20.0% |
| !!! | TAAACTTGCTTCAATATTTA+TGG | + | chr5_1:68479998-68480017 | Msa0746360:intron | 20.0% |
| !! | TTAATAAAATGTCATGTGTT+TGG | - | chr5_1:68480338-68480357 | None:intergenic | 20.0% |
| !!! | TTTAAAACCTCTGTTTTTTT+TGG | + | chr5_1:68480747-68480766 | Msa0746360:intron | 20.0% |
| !!! | TTAAAACCTCTGTTTTTTTT+GGG | + | chr5_1:68480748-68480767 | Msa0746360:intron | 20.0% |
| !!! | TTTTCATGAGAGATTTTTTT+GGG | - | chr5_1:68480989-68481008 | None:intergenic | 20.0% |
| !!! | ATTTTCATGAGAGATTTTTT+TGG | - | chr5_1:68480990-68481009 | None:intergenic | 20.0% |
| !! | ATCTTGAATGTTTAAATAGT+AGG | + | chr5_1:68481109-68481128 | Msa0746360:intron | 20.0% |
| !! | AAACCTTATATATGTATTCA+TGG | + | chr5_1:68481287-68481306 | Msa0746360:intron | 20.0% |
| !! | GAATCTAAATATAAGGAAAT+TGG | + | chr5_1:68481421-68481440 | Msa0746360:CDS | 20.0% |
| !! | TTACCTTAGATTATTAGATT+GGG | - | chr5_1:68481459-68481478 | None:intergenic | 20.0% |
| !! | CTAAATAACCATGATAAATT+GGG | - | chr5_1:68481795-68481814 | None:intergenic | 20.0% |
| ! | CAAGTGTTTGATTACAATTT+CGG | + | chr5_1:68479089-68479108 | Msa0746360:CDS | 25.0% |
| !! | GTTTGAGATAAATTTGAAGA+AGG | + | chr5_1:68479142-68479161 | Msa0746360:CDS | 25.0% |
| !! | TATAGATGATGTTGTTTATG+TGG | + | chr5_1:68479250-68479269 | Msa0746360:CDS | 25.0% |
| !!! | AGGAATTTTAAAATCGTTGT+TGG | + | chr5_1:68479553-68479572 | Msa0746360:intron | 25.0% |
| !!! | GGAATTTTAAAATCGTTGTT+GGG | + | chr5_1:68479554-68479573 | Msa0746360:intron | 25.0% |
| !!! | TCTTGTTTTTTGTTTTGAAG+AGG | + | chr5_1:68480138-68480157 | Msa0746360:intron | 25.0% |
| ! | ATTCGTAATAGATAGATATG+AGG | - | chr5_1:68480442-68480461 | None:intergenic | 25.0% |
| ! | TCATATCTATCTATTACGAA+TGG | + | chr5_1:68480441-68480460 | Msa0746360:intron | 25.0% |
| ! | TCAAGAACAGTCTAATAATA+TGG | - | chr5_1:68480545-68480564 | None:intergenic | 25.0% |
| ! | ACAATTAAAGTCATCAACTA+AGG | - | chr5_1:68480710-68480729 | None:intergenic | 25.0% |
| !! | TTGATGACTTTAATTGTACT+TGG | + | chr5_1:68480713-68480732 | Msa0746360:intron | 25.0% |
| ! | TTTAATTGTACTTGGTTTCT+AGG | + | chr5_1:68480721-68480740 | Msa0746360:intron | 25.0% |
| !!! | GTGTCAAAACATTTTTGTTT+AGG | - | chr5_1:68480809-68480828 | None:intergenic | 25.0% |
| ! | GTGCCCAAATAATATTTATT+TGG | + | chr5_1:68480925-68480944 | Msa0746360:intron | 25.0% |
| ! | ACTAAATCCTTCATTTCAAA+AGG | + | chr5_1:68481250-68481269 | Msa0746360:intron | 25.0% |
| ! | ACTCCATGAATACATATATA+AGG | - | chr5_1:68481293-68481312 | None:intergenic | 25.0% |
| ! | TTATATTTAGATTCCCTACA+AGG | - | chr5_1:68481415-68481434 | None:intergenic | 25.0% |
| ! | TTGTAGGGAATCTAAATATA+AGG | + | chr5_1:68481414-68481433 | Msa0746360:CDS | 25.0% |
| !! | AATATAAGGAAATTGGTGAT+TGG | + | chr5_1:68481428-68481447 | Msa0746360:CDS | 25.0% |
| ! | GTTACCTTAGATTATTAGAT+TGG | - | chr5_1:68481460-68481479 | None:intergenic | 25.0% |
| ! | TGAATATTGAGTAGCAAAAA+TGG | + | chr5_1:68481561-68481580 | Msa0746360:intron | 25.0% |
| ! | GAATATTGAGTAGCAAAAAT+GGG | + | chr5_1:68481562-68481581 | Msa0746360:intron | 25.0% |
| ! | CCTAAATAACCATGATAAAT+TGG | - | chr5_1:68481796-68481815 | None:intergenic | 25.0% |
| ! | CCAATTTATCATGGTTATTT+AGG | + | chr5_1:68481793-68481812 | Msa0746360:CDS | 25.0% |
| ! | TTTTGTAGTCGAAAAATCGA+AGG | - | chr5_1:68478959-68478978 | None:intergenic | 30.0% |
| TCTTGAATATCATGCTTAGT+TGG | - | chr5_1:68478996-68479015 | None:intergenic | 30.0% | |
| CGAAATTGTAATCAAACACT+TGG | - | chr5_1:68479091-68479110 | None:intergenic | 30.0% | |
| TTTGAAGAAGGAAAGTAGAT+TGG | + | chr5_1:68479154-68479173 | Msa0746360:CDS | 30.0% | |
| ATTGGATTCAATAAGAGAAG+AGG | + | chr5_1:68479172-68479191 | Msa0746360:CDS | 30.0% | |
| ACAATTAAAGTCAGCTCTTA+TGG | - | chr5_1:68479522-68479541 | None:intergenic | 30.0% | |
| TATCATATGAATTAAGGGCA+AGG | + | chr5_1:68480042-68480061 | Msa0746360:intron | 30.0% | |
| AAAGCAGTACAGTACTAAAA+CGG | + | chr5_1:68480097-68480116 | Msa0746360:intron | 30.0% | |
| !!! | TTTTTTTGGGTTACACTCTT+CGG | + | chr5_1:68480761-68480780 | Msa0746360:intron | 30.0% |
| !!! | ATGAGAGATTTTTTTGGGAA+TGG | - | chr5_1:68480984-68481003 | None:intergenic | 30.0% |
| AAATAGTAGGAAAGATTCCA+AGG | + | chr5_1:68481122-68481141 | Msa0746360:intron | 30.0% | |
| ATAGCTTCATGAATTTCTGA+AGG | - | chr5_1:68481213-68481232 | None:intergenic | 30.0% | |
| GAAGCTATGTATTGAATCAA+AGG | + | chr5_1:68481225-68481244 | Msa0746360:CDS | 30.0% | |
| !!! | GATGTATCCTTTTGAAATGA+AGG | - | chr5_1:68481260-68481279 | None:intergenic | 30.0% |
| GTACCAGTAGTAATAATGAA+AGG | + | chr5_1:68481322-68481341 | Msa0746360:intron | 30.0% | |
| TAGCCTTTCATTATTACTAC+TGG | - | chr5_1:68481328-68481347 | None:intergenic | 30.0% | |
| ATAATGAAAGGCTAACATAC+AGG | + | chr5_1:68481334-68481353 | Msa0746360:intron | 30.0% | |
| CTACCCAATCTAATAATCTA+AGG | + | chr5_1:68481453-68481472 | Msa0746360:CDS | 30.0% | |
| ACATGAGTTGTTTGTAGAAA+AGG | - | chr5_1:68481486-68481505 | None:intergenic | 30.0% | |
| GATGTGAAAATCATATGTGA+AGG | + | chr5_1:68481642-68481661 | Msa0746360:CDS | 30.0% | |
| ! | TTTTGATGCCCAATTTATCA+TGG | + | chr5_1:68481784-68481803 | Msa0746360:CDS | 30.0% |
| ! | TCATCTTGGTGATAAAAATC+TGG | - | chr5_1:68481820-68481839 | None:intergenic | 30.0% |
| TCTGTAATATTCACTCATCT+TGG | - | chr5_1:68481834-68481853 | None:intergenic | 30.0% | |
| AATAAAACCACAACCACAAC+TGG | - | chr5_1:68479054-68479073 | None:intergenic | 35.0% | |
| !!! | AGTTGTGGTTGTGGTTTTAT+TGG | + | chr5_1:68479053-68479072 | Msa0746360:CDS | 35.0% |
| !!! | GTTGTGGTTGTGGTTTTATT+GGG | + | chr5_1:68479054-68479073 | Msa0746360:CDS | 35.0% |
| ATTCAATAAGAGAAGAGGAG+TGG | + | chr5_1:68479177-68479196 | Msa0746360:CDS | 35.0% | |
| AGAGAAACAGTAGTTGTAGA+AGG | - | chr5_1:68479344-68479363 | None:intergenic | 35.0% | |
| ! | TTGGAATTAGCTTGACTTGA+GGG | - | chr5_1:68479379-68479398 | None:intergenic | 35.0% |
| !! | TCTGAATGAGAGTACTTACA+TGG | - | chr5_1:68479404-68479423 | None:intergenic | 35.0% |
| ATGGCATGAAAAATGAGTTC+AGG | - | chr5_1:68479503-68479522 | None:intergenic | 35.0% | |
| !! | TTGGATTTTAAGGGTGTGTT+TGG | + | chr5_1:68479626-68479645 | Msa0746360:intron | 35.0% |
| ! | AAAAGCTAGCTTATAGCTGA+TGG | + | chr5_1:68479699-68479718 | Msa0746360:intron | 35.0% |
| !!! | TTTTGTTTTGAAGAGGAACG+TGG | + | chr5_1:68480145-68480164 | Msa0746360:intron | 35.0% |
| !!! | TTTGTTTTGAAGAGGAACGT+GGG | + | chr5_1:68480146-68480165 | Msa0746360:intron | 35.0% |
| TGGGTGGTTATATTAGAAAG+CGG | + | chr5_1:68480165-68480184 | Msa0746360:intron | 35.0% | |
| ! | TAAGCTAGCTTATAGCTTGT+TGG | - | chr5_1:68480380-68480399 | None:intergenic | 35.0% |
| AGATTAACTAGGGGAGTAAT+GGG | - | chr5_1:68480507-68480526 | None:intergenic | 35.0% | |
| TAGATTAACTAGGGGAGTAA+TGG | - | chr5_1:68480508-68480527 | None:intergenic | 35.0% | |
| TCCAACGTTAGATTAACTAG+GGG | - | chr5_1:68480516-68480535 | None:intergenic | 35.0% | |
| GTCCAACGTTAGATTAACTA+GGG | - | chr5_1:68480517-68480536 | None:intergenic | 35.0% | |
| TGTCCAACGTTAGATTAACT+AGG | - | chr5_1:68480518-68480537 | None:intergenic | 35.0% | |
| TCTGTCCAACATTAAACTAG+AGG | - | chr5_1:68480594-68480613 | None:intergenic | 35.0% | |
| AGGCATGGAAAATGAAATCA+GGG | - | chr5_1:68480690-68480709 | None:intergenic | 35.0% | |
| AAGGCATGGAAAATGAAATC+AGG | - | chr5_1:68480691-68480710 | None:intergenic | 35.0% | |
| TAAAGTCATCAACTAAGGCA+TGG | - | chr5_1:68480705-68480724 | None:intergenic | 35.0% | |
| GTGTAACCCAAAAAAAACAG+AGG | - | chr5_1:68480757-68480776 | None:intergenic | 35.0% | |
| !! | TTTCCTCTTGCTTTTCACTT+GGG | - | chr5_1:68481185-68481204 | None:intergenic | 35.0% |
| !! | ATTTCCTCTTGCTTTTCACT+TGG | - | chr5_1:68481186-68481205 | None:intergenic | 35.0% |
| AAAGGCTAACATACAGGTTA+AGG | + | chr5_1:68481340-68481359 | Msa0746360:intron | 35.0% | |
| GTAGAAACGATGCTTATTGA+GGG | + | chr5_1:68481362-68481381 | Msa0746360:CDS | 35.0% | |
| AGGAAAGCAAAATTCCATTG+CGG | + | chr5_1:68481587-68481606 | Msa0746360:CDS | 35.0% | |
| TGATCGACCAGATGATTAAT+GGG | + | chr5_1:68481673-68481692 | Msa0746360:CDS | 35.0% | |
| !!! | GGTGTGTTTTGATTTTGAAG+TGG | - | chr5_1:68481700-68481719 | None:intergenic | 35.0% |
| CTCTACTTGATGAGAAATTG+TGG | - | chr5_1:68481739-68481758 | None:intergenic | 35.0% | |
| CACAATTTCTCATCAAGTAG+AGG | + | chr5_1:68481737-68481756 | Msa0746360:CDS | 35.0% | |
| TGTAACCAAGTGATTGAGAT+TGG | + | chr5_1:68481888-68481907 | Msa0746360:three_prime_UTR | 35.0% | |
| GATATCCAATCTCAATCACT+TGG | - | chr5_1:68481896-68481915 | None:intergenic | 35.0% | |
| GATGATGAAATCTCCAGTTG+TGG | + | chr5_1:68479038-68479057 | Msa0746360:CDS | 40.0% | |
| ! | TGATGTTGTTTATGTGGCAG+TGG | + | chr5_1:68479256-68479275 | Msa0746360:CDS | 40.0% |
| ! | GATGTTGTTTATGTGGCAGT+GGG | + | chr5_1:68479257-68479276 | Msa0746360:CDS | 40.0% |
| ! | AAATGGTGGAAGTTCAAGCA+TGG | + | chr5_1:68479283-68479302 | Msa0746360:CDS | 40.0% |
| !! | AGTAGTTGTAGAAGGTGTCA+CGG | - | chr5_1:68479336-68479355 | None:intergenic | 40.0% |
| ! | GTTGGAATTAGCTTGACTTG+AGG | - | chr5_1:68479380-68479399 | None:intergenic | 40.0% |
| !! | TGAGAGTACTTACATGGAGT+TGG | - | chr5_1:68479398-68479417 | None:intergenic | 40.0% |
| AGGCACAATCATTCACACTT+AGG | - | chr5_1:68480422-68480441 | None:intergenic | 40.0% | |
| TCCCCTAGTTAATCTAACGT+TGG | + | chr5_1:68480512-68480531 | Msa0746360:intron | 40.0% | |
| !! | CATTAAACTAGAGGAGCGTT+GGG | - | chr5_1:68480585-68480604 | None:intergenic | 40.0% |
| ! | ACATTAAACTAGAGGAGCGT+TGG | - | chr5_1:68480586-68480605 | None:intergenic | 40.0% |
| ! | ACGCTCCTCTAGTTTAATGT+TGG | + | chr5_1:68480586-68480605 | Msa0746360:intron | 40.0% |
| GTTGGACAGAGTCCTTATTA+TGG | + | chr5_1:68480604-68480623 | Msa0746360:intron | 40.0% | |
| TCTAGATTTACACGACTCCT+TGG | - | chr5_1:68481142-68481161 | None:intergenic | 40.0% | |
| GGTAGAAACGATGCTTATTG+AGG | + | chr5_1:68481361-68481380 | Msa0746360:CDS | 40.0% | |
| TTGAGTAGCAAAAATGGGTC+AGG | + | chr5_1:68481567-68481586 | Msa0746360:intron | 40.0% | |
| GTGATCGACCAGATGATTAA+TGG | + | chr5_1:68481672-68481691 | Msa0746360:CDS | 40.0% | |
| AAGTGGACCCATTAATCATC+TGG | - | chr5_1:68481683-68481702 | None:intergenic | 40.0% | |
| AAGCTTGAGTGGGACAAAAT+GGG | - | chr5_1:68481766-68481785 | None:intergenic | 40.0% | |
| AAAGCTTGAGTGGGACAAAA+TGG | - | chr5_1:68481767-68481786 | None:intergenic | 40.0% | |
| GAAATCTCCAGTTGTGGTTG+TGG | + | chr5_1:68479044-68479063 | Msa0746360:CDS | 45.0% | |
| AATTTCGGAGACGACGATGA+TGG | + | chr5_1:68479104-68479123 | Msa0746360:CDS | 45.0% | |
| TATGTGGCAGTGGGAACAAA+TGG | + | chr5_1:68479266-68479285 | Msa0746360:CDS | 45.0% | |
| !! | CAAGCATGGAAGCACTTTCA+TGG | + | chr5_1:68479297-68479316 | Msa0746360:CDS | 45.0% |
| TGACTTGAGGGAAAACGTGT+AGG | - | chr5_1:68479367-68479386 | None:intergenic | 45.0% | |
| CTCAAGGGACGTCCATAATA+AGG | - | chr5_1:68480619-68480638 | None:intergenic | 45.0% | |
| ! | TGCTTTTCACTTGGGTCAAG+TGG | - | chr5_1:68481177-68481196 | None:intergenic | 45.0% |
| TGACCCAAGTGAAAAGCAAG+AGG | + | chr5_1:68481179-68481198 | Msa0746360:CDS | 45.0% | |
| AAGCCATTGTGGACCTTGTA+GGG | + | chr5_1:68481399-68481418 | Msa0746360:CDS | 45.0% | |
| ATTCCCTACAAGGTCCACAA+TGG | - | chr5_1:68481405-68481424 | None:intergenic | 45.0% | |
| GCAAAATTCCATTGCGGACA+TGG | + | chr5_1:68481593-68481612 | Msa0746360:CDS | 45.0% | |
| TTTGAACACCATGTCCGCAA+TGG | - | chr5_1:68481604-68481623 | None:intergenic | 45.0% | |
| TGTGGAACTGCTACTGTTTC+TGG | - | chr5_1:68481721-68481740 | None:intergenic | 45.0% | |
| TGGGCATCAAAAGCTTGAGT+GGG | - | chr5_1:68481776-68481795 | None:intergenic | 45.0% | |
| TTGGGCATCAAAAGCTTGAG+TGG | - | chr5_1:68481777-68481796 | None:intergenic | 45.0% | |
| ! | AGGTGTCACGGCATGTTTCA+AGG | - | chr5_1:68479324-68479343 | None:intergenic | 50.0% |
| !!! | GTTTTGAAGAGGAACGTGGG+TGG | + | chr5_1:68480149-68480168 | Msa0746360:intron | 50.0% |
| CAACGTTGCTGAAGCCATTG+TGG | + | chr5_1:68481388-68481407 | Msa0746360:CDS | 50.0% | |
| GAAGCCATTGTGGACCTTGT+AGG | + | chr5_1:68481398-68481417 | Msa0746360:CDS | 50.0% | |
| GTGGCAGTGGGAACAAATGG+TGG | + | chr5_1:68479269-68479288 | Msa0746360:CDS | 55.0% | |
| ! | CTCTTCGGTGCACACTTGCT+TGG | + | chr5_1:68480776-68480795 | Msa0746360:intron | 55.0% |
| !! | CTAGAGGAGCGTTGGGAGCG+TGG | - | chr5_1:68480578-68480597 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 68478933 | 68481982 | 68478933 | ID=Msa0746360;Name=Msa0746360 |
| chr5_1 | mRNA | 68478933 | 68481982 | 68478933 | ID=Msa0746360-mRNA-1;Parent=Msa0746360;Name=Msa0746360-mRNA-1;_AED=0.26;_eAED=0.26;_QI=57|1|1|1|1|1|4|143|305 |
| chr5_1 | exon | 68478933 | 68479404 | 68478933 | ID=Msa0746360-mRNA-1:exon:20455;Parent=Msa0746360-mRNA-1 |
| chr5_1 | exon | 68481128 | 68481246 | 68481128 | ID=Msa0746360-mRNA-1:exon:20456;Parent=Msa0746360-mRNA-1 |
| chr5_1 | exon | 68481356 | 68481474 | 68481356 | ID=Msa0746360-mRNA-1:exon:20457;Parent=Msa0746360-mRNA-1 |
| chr5_1 | exon | 68481575 | 68481982 | 68481575 | ID=Msa0746360-mRNA-1:exon:20458;Parent=Msa0746360-mRNA-1 |
| chr5_1 | five_prime_UTR | 68478933 | 68478989 | 68478933 | ID=Msa0746360-mRNA-1:five_prime_utr;Parent=Msa0746360-mRNA-1 |
| chr5_1 | CDS | 68478990 | 68479404 | 68478990 | ID=Msa0746360-mRNA-1:cds;Parent=Msa0746360-mRNA-1 |
| chr5_1 | CDS | 68481128 | 68481246 | 68481128 | ID=Msa0746360-mRNA-1:cds;Parent=Msa0746360-mRNA-1 |
| chr5_1 | CDS | 68481356 | 68481474 | 68481356 | ID=Msa0746360-mRNA-1:cds;Parent=Msa0746360-mRNA-1 |
| chr5_1 | CDS | 68481575 | 68481839 | 68481575 | ID=Msa0746360-mRNA-1:cds;Parent=Msa0746360-mRNA-1 |
| chr5_1 | three_prime_UTR | 68481840 | 68481982 | 68481840 | ID=Msa0746360-mRNA-1:three_prime_utr;Parent=Msa0746360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
