Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1224530 | XP_013458668.1 | 89.677 | 310 | 23 | 6 | 1 | 305 | 8 | 313 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1224530 | sp|Q9SW11|PUB35_ARATH | 29.299 | 157 | 105 | 2 | 94 | 249 | 22 | 173 | 1.95e-14 | 77.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0746360 | Msa1224530 | 0.964081 | 7.028642e-123 | -8.615850e-47 |
| Msa1224530 | Msa1333780 | 0.897007 | 2.134267e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1224530 | MtrunA17_Chr4g0076471 | 89.677 | 310 | 23 | 6 | 1 | 305 | 8 | 313 | 0.0 | 530 |
| Msa1224530 | MtrunA17_Chr4g0076451 | 48.588 | 177 | 82 | 5 | 92 | 261 | 50 | 224 | 4.93e-42 | 145 |
| Msa1224530 | MtrunA17_Chr4g0058581 | 36.957 | 184 | 101 | 6 | 85 | 265 | 109 | 280 | 2.53e-29 | 113 |
| Msa1224530 | MtrunA17_Chr4g0070941 | 30.052 | 193 | 122 | 8 | 94 | 281 | 7 | 191 | 4.01e-17 | 82.0 |
| Msa1224530 | MtrunA17_Chr2g0328101 | 31.677 | 161 | 101 | 4 | 92 | 251 | 31 | 183 | 7.69e-17 | 80.9 |
| Msa1224530 | MtrunA17_Chr3g0079031 | 29.050 | 179 | 117 | 4 | 85 | 259 | 9 | 181 | 6.63e-12 | 66.2 |
| Msa1224530 | MtrunA17_Chr3g0079051 | 26.875 | 160 | 112 | 3 | 94 | 252 | 24 | 179 | 3.28e-11 | 63.9 |
| Msa1224530 | MtrunA17_Chr7g0247831 | 24.224 | 161 | 118 | 2 | 88 | 248 | 48 | 204 | 3.56e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1224530 | AT5G47740.1 | 43.415 | 205 | 104 | 7 | 62 | 263 | 21 | 216 | 3.03e-46 | 156 |
| Msa1224530 | AT5G47740.2 | 42.995 | 207 | 104 | 8 | 62 | 263 | 21 | 218 | 2.44e-44 | 151 |
| Msa1224530 | AT2G19410.2 | 28.652 | 178 | 117 | 5 | 100 | 270 | 37 | 211 | 5.92e-16 | 79.0 |
| Msa1224530 | AT4G25160.1 | 29.299 | 157 | 105 | 2 | 94 | 249 | 22 | 173 | 1.98e-15 | 77.4 |
| Msa1224530 | AT2G45910.2 | 26.708 | 161 | 114 | 2 | 88 | 248 | 43 | 199 | 5.46e-14 | 72.8 |
| Msa1224530 | AT2G45910.1 | 26.708 | 161 | 114 | 2 | 88 | 248 | 43 | 199 | 5.46e-14 | 72.8 |
| Msa1224530 | AT5G51270.2 | 28.662 | 157 | 105 | 2 | 94 | 248 | 34 | 185 | 2.41e-11 | 64.7 |
| Msa1224530 | AT5G51270.1 | 28.662 | 157 | 105 | 2 | 94 | 248 | 34 | 185 | 2.41e-11 | 64.7 |
| Msa1224530 | AT5G65500.2 | 30.055 | 183 | 123 | 4 | 72 | 251 | 2 | 182 | 3.02e-11 | 64.7 |
| Msa1224530 | AT5G65500.1 | 30.601 | 183 | 120 | 5 | 72 | 251 | 2 | 180 | 8.80e-11 | 63.2 |
| Msa1224530 | AT3G61410.2 | 22.360 | 161 | 121 | 3 | 88 | 248 | 10 | 166 | 9.50e-11 | 62.0 |
Find 65 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAATAACCATGATAAAT+TGG | 0.121575 | 8_1:-89503913 | None:intergenic |
| TGTGGAACTGCTACTGTTTC+TGG | 0.142547 | 8_1:-89503838 | None:intergenic |
| CCAATTTATCATGGTTATTT+AGG | 0.173104 | 8_1:+89503913 | Msa1224530:CDS |
| TGTATATACAAGAATAATTT+TGG | 0.184647 | 8_1:+89503974 | Msa1224530:three_prime_UTR |
| AAAGCTTGAGTGGGACAAAA+TGG | 0.270855 | 8_1:-89503884 | None:intergenic |
| CAAGTGTTTGATTACAATTT+CGG | 0.312597 | 8_1:+89501206 | Msa1224530:CDS |
| GTGATCGACCAGATGATTAA+TGG | 0.319312 | 8_1:+89503792 | Msa1224530:CDS |
| GTTACCTTAGATTATTAGAT+TGG | 0.320558 | 8_1:-89503577 | None:intergenic |
| CTACCCAATCTAATAATCTA+AGG | 0.338317 | 8_1:+89503573 | Msa1224530:CDS |
| GAATCTAAATATAAGGAAAT+TGG | 0.342523 | 8_1:+89503541 | Msa1224530:CDS |
| TTTGAAGAAGGAAAGTAGAT+TGG | 0.355768 | 8_1:+89501271 | Msa1224530:CDS |
| TTGTAGGGAATCTAAATATA+AGG | 0.359391 | 8_1:+89503534 | Msa1224530:CDS |
| CAAGCATGGAAGCACTTTCA+TGG | 0.384069 | 8_1:+89501414 | Msa1224530:CDS |
| TGTAACCAAGTGATTGAGAT+TGG | 0.384205 | 8_1:+89504009 | Msa1224530:three_prime_UTR |
| AATAAAACCACAACCACAAC+TGG | 0.394819 | 8_1:-89501168 | None:intergenic |
| TCTTGAATATCATGCTTAGT+TGG | 0.411358 | 8_1:-89501110 | None:intergenic |
| AAGTGGACCCATTAATCATC+TGG | 0.419370 | 8_1:-89503800 | None:intergenic |
| CTAAATAACCATGATAAATT+GGG | 0.423603 | 8_1:-89503912 | None:intergenic |
| TTGGAATTAGCTTGACTTGA+GGG | 0.423894 | 8_1:-89501493 | None:intergenic |
| GCAAAATTCCATTGCGGACA+TGG | 0.426337 | 8_1:+89503713 | Msa1224530:CDS |
| AGAGAAACAGTAGTTGTAGA+AGG | 0.431084 | 8_1:-89501458 | None:intergenic |
| GAAATCTCCAGTTGTGGTTG+TGG | 0.445667 | 8_1:+89501161 | Msa1224530:CDS |
| TGATCGACCAGATGATTAAT+GGG | 0.456946 | 8_1:+89503793 | Msa1224530:CDS |
| AATATAAGGAAATTGGTGAT+TGG | 0.458551 | 8_1:+89503548 | Msa1224530:CDS |
| GTTTGAGATAAATTTGAAGA+AGG | 0.464932 | 8_1:+89501259 | Msa1224530:CDS |
| GAAGCCATTGTGGACCTTGT+AGG | 0.467590 | 8_1:+89503518 | Msa1224530:CDS |
| TCTGTAATATTCACTCATCT+TGG | 0.476127 | 8_1:-89503951 | None:intergenic |
| AGGTGTCACGGCATGTTTCA+AGG | 0.477649 | 8_1:-89501438 | None:intergenic |
| TTACCTTAGATTATTAGATT+GGG | 0.480669 | 8_1:-89503576 | None:intergenic |
| GGTAGAAACGATGCTTATTG+AGG | 0.487398 | 8_1:+89503481 | Msa1224530:CDS |
| TGAGAGTACTTACATGGAGT+TGG | 0.499850 | 8_1:-89501512 | None:intergenic |
| AAGCTTGAGTGGGACAAAAT+GGG | 0.501117 | 8_1:-89503883 | None:intergenic |
| TTATATTTAGATTCCCTACA+AGG | 0.503404 | 8_1:-89503532 | None:intergenic |
| AAGCCATTGTGGACCTTGTA+GGG | 0.505067 | 8_1:+89503519 | Msa1224530:CDS |
| TATAGATGATGTTGTTTATG+TGG | 0.505857 | 8_1:+89501367 | Msa1224530:CDS |
| GAAGCTATGTATTGAATCAA+AGG | 0.507814 | 8_1:+89503345 | Msa1224530:CDS |
| GTAGAAACGATGCTTATTGA+GGG | 0.508850 | 8_1:+89503482 | Msa1224530:CDS |
| AATTTCGGAGACGACGATGA+TGG | 0.516786 | 8_1:+89501221 | Msa1224530:CDS |
| CGAAATTGTAATCAAACACT+TGG | 0.523720 | 8_1:-89501205 | None:intergenic |
| CTCTACTTGATGAGAAATTG+TGG | 0.527299 | 8_1:-89503856 | None:intergenic |
| ATTGGATTCAATAAGAGAAG+AGG | 0.530259 | 8_1:+89501289 | Msa1224530:CDS |
| ATTACAGGTGTTGGCTGTGA+TGG | 0.533973 | 8_1:-89504095 | None:intergenic |
| CACAATTTCTCATCAAGTAG+AGG | 0.536462 | 8_1:+89503857 | Msa1224530:CDS |
| TCTAGATTTACACGACTCCT+TGG | 0.549421 | 8_1:-89503259 | None:intergenic |
| GATATCCAATCTCAATCACT+TGG | 0.550413 | 8_1:-89504014 | None:intergenic |
| TATGTGGCAGTGGGAACAAA+TGG | 0.556548 | 8_1:+89501383 | Msa1224530:CDS |
| TGATGTTGTTTATGTGGCAG+TGG | 0.557388 | 8_1:+89501373 | Msa1224530:CDS |
| AAATAGTAGGAAAGATTCCA+AGG | 0.561559 | 8_1:+89503242 | Msa1224530:intron |
| TTTGAACACCATGTCCGCAA+TGG | 0.562956 | 8_1:-89503721 | None:intergenic |
| ATAGCTTCATGAATTTCTGA+AGG | 0.578929 | 8_1:-89503330 | None:intergenic |
| TTGGGCATCAAAAGCTTGAG+TGG | 0.580087 | 8_1:-89503894 | None:intergenic |
| CAACGTTGCTGAAGCCATTG+TGG | 0.592251 | 8_1:+89503508 | Msa1224530:CDS |
| AAATGGTGGAAGTTCAAGCA+TGG | 0.604604 | 8_1:+89501400 | Msa1224530:CDS |
| TGACTTGAGGGAAAACGTGT+AGG | 0.617086 | 8_1:-89501481 | None:intergenic |
| TGGGCATCAAAAGCTTGAGT+GGG | 0.620582 | 8_1:-89503893 | None:intergenic |
| TGACCCAAGTGAAAAGCAAG+AGG | 0.622721 | 8_1:+89503299 | Msa1224530:CDS |
| GTTGGAATTAGCTTGACTTG+AGG | 0.628301 | 8_1:-89501494 | None:intergenic |
| GATGTTGTTTATGTGGCAGT+GGG | 0.642705 | 8_1:+89501374 | Msa1224530:CDS |
| AGTAGTTGTAGAAGGTGTCA+CGG | 0.650946 | 8_1:-89501450 | None:intergenic |
| ATTCAATAAGAGAAGAGGAG+TGG | 0.652515 | 8_1:+89501294 | Msa1224530:CDS |
| ATTCCCTACAAGGTCCACAA+TGG | 0.658292 | 8_1:-89503522 | None:intergenic |
| GTGGCAGTGGGAACAAATGG+TGG | 0.662195 | 8_1:+89501386 | Msa1224530:CDS |
| GATGTGAAAATCATATGTGA+AGG | 0.682874 | 8_1:+89503762 | Msa1224530:CDS |
| GATGATGAAATCTCCAGTTG+TGG | 0.697511 | 8_1:+89501155 | Msa1224530:CDS |
| AGGAAAGCAAAATTCCATTG+CGG | 0.715974 | 8_1:+89503707 | Msa1224530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATAAAATAAATAAA+AGG | + | chr8_1:89502327-89502346 | Msa1224530:intron | 0.0% |
| !!! | TTATTAAAATTAAAAGTGTT+TGG | + | chr8_1:89501873-89501892 | Msa1224530:intron | 10.0% |
| !! | TAAATATAAAATGACATAAA+AGG | + | chr8_1:89501921-89501940 | Msa1224530:intron | 10.0% |
| !! | ATTATTTATCATATGAATTA+AGG | + | chr8_1:89502153-89502172 | Msa1224530:intron | 10.0% |
| !! | TTATTTATCATATGAATTAA+GGG | + | chr8_1:89502154-89502173 | Msa1224530:intron | 10.0% |
| !! | AATAAATAAAAGGTTAAAAT+TGG | + | chr8_1:89502337-89502356 | Msa1224530:intron | 10.0% |
| !!! | ATTCTTTTTTAATTTTTTCT+TGG | - | chr8_1:89502960-89502979 | None:intergenic | 10.0% |
| !!! | ATTACAAACAATTTTTTTTT+TGG | - | chr8_1:89503202-89503221 | None:intergenic | 10.0% |
| !! | TTTCATAATCTTAAACAATT+TGG | + | chr8_1:89501549-89501568 | Msa1224530:intron | 15.0% |
| !! | TTCATAATCTTAAACAATTT+GGG | + | chr8_1:89501550-89501569 | Msa1224530:intron | 15.0% |
| !! | TGATCAATATAATATATTGT+TGG | + | chr8_1:89501724-89501743 | Msa1224530:intron | 15.0% |
| !!! | TAATATATTGTTGGATTTTA+AGG | + | chr8_1:89501733-89501752 | Msa1224530:intron | 15.0% |
| !!! | AATATATTGTTGGATTTTAA+GGG | + | chr8_1:89501734-89501753 | Msa1224530:intron | 15.0% |
| !!! | ATCTAATTAATTTTTCTCAA+GGG | - | chr8_1:89502754-89502773 | None:intergenic | 15.0% |
| !!! | TATCTAATTAATTTTTCTCA+AGG | - | chr8_1:89502755-89502774 | None:intergenic | 15.0% |
| !! | ACTCCAAATAAATATTATTT+GGG | - | chr8_1:89503051-89503070 | None:intergenic | 15.0% |
| !! | AACTCCAAATAAATATTATT+TGG | - | chr8_1:89503052-89503071 | None:intergenic | 15.0% |
| !!! | TGTATATACAAGAATAATTT+TGG | + | chr8_1:89503974-89503993 | Msa1224530:three_prime_UTR | 15.0% |
| !! | GATTATTTAAATTGTGACTA+TGG | - | chr8_1:89501576-89501595 | None:intergenic | 20.0% |
| !! | TTTAATTGTACTTGATTACT+AGG | + | chr8_1:89501650-89501669 | Msa1224530:intron | 20.0% |
| !!! | TTGGGATTTTTTATATTCAA+AGG | + | chr8_1:89501689-89501708 | Msa1224530:intron | 20.0% |
| !!! | TAAACTTGCTTCAATATTTA+TGG | + | chr8_1:89502115-89502134 | Msa1224530:intron | 20.0% |
| !! | TTAATAAAATGTCATGTGTT+TGG | - | chr8_1:89502455-89502474 | None:intergenic | 20.0% |
| !!! | TTTAAAACCTCTGTTTTTTT+TGG | + | chr8_1:89502867-89502886 | Msa1224530:intron | 20.0% |
| !!! | TTAAAACCTCTGTTTTTTTT+GGG | + | chr8_1:89502868-89502887 | Msa1224530:intron | 20.0% |
| !!! | TTTTCATGAGAGATTTTTTT+GGG | - | chr8_1:89503109-89503128 | None:intergenic | 20.0% |
| !!! | ATTTTCATGAGAGATTTTTT+TGG | - | chr8_1:89503110-89503129 | None:intergenic | 20.0% |
| !! | ATCTTGAATGTTTAAATAGT+AGG | + | chr8_1:89503229-89503248 | Msa1224530:intron | 20.0% |
| !! | AAACCTTATATATGTATTCA+TGG | + | chr8_1:89503407-89503426 | Msa1224530:intron | 20.0% |
| !! | GAATCTAAATATAAGGAAAT+TGG | + | chr8_1:89503541-89503560 | Msa1224530:CDS | 20.0% |
| !! | TTACCTTAGATTATTAGATT+GGG | - | chr8_1:89503579-89503598 | None:intergenic | 20.0% |
| !! | CTAAATAACCATGATAAATT+GGG | - | chr8_1:89503915-89503934 | None:intergenic | 20.0% |
| ! | CAAGTGTTTGATTACAATTT+CGG | + | chr8_1:89501206-89501225 | Msa1224530:CDS | 25.0% |
| !! | GTTTGAGATAAATTTGAAGA+AGG | + | chr8_1:89501259-89501278 | Msa1224530:CDS | 25.0% |
| !! | TATAGATGATGTTGTTTATG+TGG | + | chr8_1:89501367-89501386 | Msa1224530:CDS | 25.0% |
| !!! | AGGAATTTTAAAATCGTTGT+TGG | + | chr8_1:89501670-89501689 | Msa1224530:intron | 25.0% |
| !!! | GGAATTTTAAAATCGTTGTT+GGG | + | chr8_1:89501671-89501690 | Msa1224530:intron | 25.0% |
| !!! | TCTTGTTTTTTGTTTTGAAG+AGG | + | chr8_1:89502255-89502274 | Msa1224530:intron | 25.0% |
| ! | ATTCGTAATAGATAGATATG+AGG | - | chr8_1:89502559-89502578 | None:intergenic | 25.0% |
| ! | TCATATCTATCTATTACGAA+TGG | + | chr8_1:89502558-89502577 | Msa1224530:intron | 25.0% |
| ! | TCAAGAACAGTCTAATAATA+TGG | - | chr8_1:89502665-89502684 | None:intergenic | 25.0% |
| ! | ACAATTAAAGTCATCAACTA+AGG | - | chr8_1:89502830-89502849 | None:intergenic | 25.0% |
| !! | TTGATGACTTTAATTGTACT+TGG | + | chr8_1:89502833-89502852 | Msa1224530:intron | 25.0% |
| ! | TTTAATTGTACTTGGTTTCT+AGG | + | chr8_1:89502841-89502860 | Msa1224530:intron | 25.0% |
| !!! | GTGTCAAAACATTTTTGTTT+AGG | - | chr8_1:89502929-89502948 | None:intergenic | 25.0% |
| ! | GTGCCCAAATAATATTTATT+TGG | + | chr8_1:89503045-89503064 | Msa1224530:intron | 25.0% |
| ! | ACTAAATCCTTCATTTCAAA+AGG | + | chr8_1:89503370-89503389 | Msa1224530:intron | 25.0% |
| ! | ACTCCATGAATACATATATA+AGG | - | chr8_1:89503413-89503432 | None:intergenic | 25.0% |
| ! | TTATATTTAGATTCCCTACA+AGG | - | chr8_1:89503535-89503554 | None:intergenic | 25.0% |
| ! | TTGTAGGGAATCTAAATATA+AGG | + | chr8_1:89503534-89503553 | Msa1224530:CDS | 25.0% |
| !! | AATATAAGGAAATTGGTGAT+TGG | + | chr8_1:89503548-89503567 | Msa1224530:CDS | 25.0% |
| ! | GTTACCTTAGATTATTAGAT+TGG | - | chr8_1:89503580-89503599 | None:intergenic | 25.0% |
| ! | TGAATATTGAGTAGCAAAAA+TGG | + | chr8_1:89503681-89503700 | Msa1224530:intron | 25.0% |
| ! | GAATATTGAGTAGCAAAAAT+GGG | + | chr8_1:89503682-89503701 | Msa1224530:intron | 25.0% |
| ! | CCTAAATAACCATGATAAAT+TGG | - | chr8_1:89503916-89503935 | None:intergenic | 25.0% |
| ! | CCAATTTATCATGGTTATTT+AGG | + | chr8_1:89503913-89503932 | Msa1224530:CDS | 25.0% |
| ! | TTTTGTAGTCGAAAAATCGA+AGG | - | chr8_1:89501076-89501095 | None:intergenic | 30.0% |
| TCTTGAATATCATGCTTAGT+TGG | - | chr8_1:89501113-89501132 | None:intergenic | 30.0% | |
| CGAAATTGTAATCAAACACT+TGG | - | chr8_1:89501208-89501227 | None:intergenic | 30.0% | |
| TTTGAAGAAGGAAAGTAGAT+TGG | + | chr8_1:89501271-89501290 | Msa1224530:CDS | 30.0% | |
| ATTGGATTCAATAAGAGAAG+AGG | + | chr8_1:89501289-89501308 | Msa1224530:CDS | 30.0% | |
| ACAATTAAAGTCAGCTCTTA+TGG | - | chr8_1:89501639-89501658 | None:intergenic | 30.0% | |
| TATCATATGAATTAAGGGCA+AGG | + | chr8_1:89502159-89502178 | Msa1224530:intron | 30.0% | |
| AAAGCAGTACAGTACTAAAA+CGG | + | chr8_1:89502214-89502233 | Msa1224530:intron | 30.0% | |
| !!! | TTTTTTTGGGTTACACTCTT+CGG | + | chr8_1:89502881-89502900 | Msa1224530:intron | 30.0% |
| !!! | ATGAGAGATTTTTTTGGGAA+TGG | - | chr8_1:89503104-89503123 | None:intergenic | 30.0% |
| AAATAGTAGGAAAGATTCCA+AGG | + | chr8_1:89503242-89503261 | Msa1224530:intron | 30.0% | |
| ATAGCTTCATGAATTTCTGA+AGG | - | chr8_1:89503333-89503352 | None:intergenic | 30.0% | |
| GAAGCTATGTATTGAATCAA+AGG | + | chr8_1:89503345-89503364 | Msa1224530:CDS | 30.0% | |
| !!! | GATGTATCCTTTTGAAATGA+AGG | - | chr8_1:89503380-89503399 | None:intergenic | 30.0% |
| GTACCAGTAGTAATAATGAA+AGG | + | chr8_1:89503442-89503461 | Msa1224530:intron | 30.0% | |
| TAGCCTTTCATTATTACTAC+TGG | - | chr8_1:89503448-89503467 | None:intergenic | 30.0% | |
| ATAATGAAAGGCTAACATAC+AGG | + | chr8_1:89503454-89503473 | Msa1224530:intron | 30.0% | |
| CTACCCAATCTAATAATCTA+AGG | + | chr8_1:89503573-89503592 | Msa1224530:CDS | 30.0% | |
| ACATGAGTTGTTTGTAGAAA+AGG | - | chr8_1:89503606-89503625 | None:intergenic | 30.0% | |
| GATGTGAAAATCATATGTGA+AGG | + | chr8_1:89503762-89503781 | Msa1224530:CDS | 30.0% | |
| ! | TTTTGATGCCCAATTTATCA+TGG | + | chr8_1:89503904-89503923 | Msa1224530:CDS | 30.0% |
| ! | TCATCTTGGTGATAAAAATC+TGG | - | chr8_1:89503940-89503959 | None:intergenic | 30.0% |
| TCTGTAATATTCACTCATCT+TGG | - | chr8_1:89503954-89503973 | None:intergenic | 30.0% | |
| AATAAAACCACAACCACAAC+TGG | - | chr8_1:89501171-89501190 | None:intergenic | 35.0% | |
| !!! | AGTTGTGGTTGTGGTTTTAT+TGG | + | chr8_1:89501170-89501189 | Msa1224530:CDS | 35.0% |
| !!! | GTTGTGGTTGTGGTTTTATT+GGG | + | chr8_1:89501171-89501190 | Msa1224530:CDS | 35.0% |
| ATTCAATAAGAGAAGAGGAG+TGG | + | chr8_1:89501294-89501313 | Msa1224530:CDS | 35.0% | |
| AGAGAAACAGTAGTTGTAGA+AGG | - | chr8_1:89501461-89501480 | None:intergenic | 35.0% | |
| ! | TTGGAATTAGCTTGACTTGA+GGG | - | chr8_1:89501496-89501515 | None:intergenic | 35.0% |
| !! | TCTGAATGAGAGTACTTACA+TGG | - | chr8_1:89501521-89501540 | None:intergenic | 35.0% |
| ATGGCATGAAAAATGAGTTC+AGG | - | chr8_1:89501620-89501639 | None:intergenic | 35.0% | |
| !! | TTGGATTTTAAGGGTGTGTT+TGG | + | chr8_1:89501743-89501762 | Msa1224530:intron | 35.0% |
| ! | AAAAGCTAGCTTATAGCTGA+TGG | + | chr8_1:89501816-89501835 | Msa1224530:intron | 35.0% |
| !!! | TTTTGTTTTGAAGAGGAACG+TGG | + | chr8_1:89502262-89502281 | Msa1224530:intron | 35.0% |
| !!! | TTTGTTTTGAAGAGGAACGT+GGG | + | chr8_1:89502263-89502282 | Msa1224530:intron | 35.0% |
| TGGGTGGTTATATTAGAAAG+CGG | + | chr8_1:89502282-89502301 | Msa1224530:intron | 35.0% | |
| ! | TAAGCTAGCTTATAGCTTGT+TGG | - | chr8_1:89502497-89502516 | None:intergenic | 35.0% |
| AACGTTAGATTAACTAGGTG+GGG | - | chr8_1:89502633-89502652 | None:intergenic | 35.0% | |
| CAACGTTAGATTAACTAGGT+GGG | - | chr8_1:89502634-89502653 | None:intergenic | 35.0% | |
| TGTCCAACGTTAGATTAACT+AGG | - | chr8_1:89502638-89502657 | None:intergenic | 35.0% | |
| TCTGTCCAACATTAAACTAG+AGG | - | chr8_1:89502714-89502733 | None:intergenic | 35.0% | |
| AGGCATGGAAAATGAAATCA+GGG | - | chr8_1:89502810-89502829 | None:intergenic | 35.0% | |
| AAGGCATGGAAAATGAAATC+AGG | - | chr8_1:89502811-89502830 | None:intergenic | 35.0% | |
| TAAAGTCATCAACTAAGGCA+TGG | - | chr8_1:89502825-89502844 | None:intergenic | 35.0% | |
| GTGTAACCCAAAAAAAACAG+AGG | - | chr8_1:89502877-89502896 | None:intergenic | 35.0% | |
| !! | TTTCCTCTTGCTTTTCACTT+GGG | - | chr8_1:89503305-89503324 | None:intergenic | 35.0% |
| !! | ATTTCCTCTTGCTTTTCACT+TGG | - | chr8_1:89503306-89503325 | None:intergenic | 35.0% |
| AAAGGCTAACATACAGGTTA+AGG | + | chr8_1:89503460-89503479 | Msa1224530:intron | 35.0% | |
| GTAGAAACGATGCTTATTGA+GGG | + | chr8_1:89503482-89503501 | Msa1224530:CDS | 35.0% | |
| AGGAAAGCAAAATTCCATTG+CGG | + | chr8_1:89503707-89503726 | Msa1224530:CDS | 35.0% | |
| TGATCGACCAGATGATTAAT+GGG | + | chr8_1:89503793-89503812 | Msa1224530:CDS | 35.0% | |
| !!! | GGTGTGTTTTGATTTTGAAG+TGG | - | chr8_1:89503820-89503839 | None:intergenic | 35.0% |
| CTCTACTTGATGAGAAATTG+TGG | - | chr8_1:89503859-89503878 | None:intergenic | 35.0% | |
| CACAATTTCTCATCAAGTAG+AGG | + | chr8_1:89503857-89503876 | Msa1224530:CDS | 35.0% | |
| TGTAACCAAGTGATTGAGAT+TGG | + | chr8_1:89504009-89504028 | Msa1224530:three_prime_UTR | 35.0% | |
| GATATCCAATCTCAATCACT+TGG | - | chr8_1:89504017-89504036 | None:intergenic | 35.0% | |
| GATGATGAAATCTCCAGTTG+TGG | + | chr8_1:89501155-89501174 | Msa1224530:CDS | 40.0% | |
| ! | TGATGTTGTTTATGTGGCAG+TGG | + | chr8_1:89501373-89501392 | Msa1224530:CDS | 40.0% |
| ! | GATGTTGTTTATGTGGCAGT+GGG | + | chr8_1:89501374-89501393 | Msa1224530:CDS | 40.0% |
| ! | AAATGGTGGAAGTTCAAGCA+TGG | + | chr8_1:89501400-89501419 | Msa1224530:CDS | 40.0% |
| !! | AGTAGTTGTAGAAGGTGTCA+CGG | - | chr8_1:89501453-89501472 | None:intergenic | 40.0% |
| ! | GTTGGAATTAGCTTGACTTG+AGG | - | chr8_1:89501497-89501516 | None:intergenic | 40.0% |
| !! | TGAGAGTACTTACATGGAGT+TGG | - | chr8_1:89501515-89501534 | None:intergenic | 40.0% |
| AGGCACAATCATTCACACTT+AGG | - | chr8_1:89502539-89502558 | None:intergenic | 40.0% | |
| TTAACTAGGTGGGGAGTAAT+GGG | - | chr8_1:89502624-89502643 | None:intergenic | 40.0% | |
| ATTAACTAGGTGGGGAGTAA+TGG | - | chr8_1:89502625-89502644 | None:intergenic | 40.0% | |
| CCAACGTTAGATTAACTAGG+TGG | - | chr8_1:89502635-89502654 | None:intergenic | 40.0% | |
| CCACCTAGTTAATCTAACGT+TGG | + | chr8_1:89502632-89502651 | Msa1224530:intron | 40.0% | |
| !! | CATTAAACTAGAGGAGCGTT+GGG | - | chr8_1:89502705-89502724 | None:intergenic | 40.0% |
| ! | ACATTAAACTAGAGGAGCGT+TGG | - | chr8_1:89502706-89502725 | None:intergenic | 40.0% |
| ! | ACGCTCCTCTAGTTTAATGT+TGG | + | chr8_1:89502706-89502725 | Msa1224530:intron | 40.0% |
| GTTGGACAGAGTCCTTATTA+TGG | + | chr8_1:89502724-89502743 | Msa1224530:intron | 40.0% | |
| TCTAGATTTACACGACTCCT+TGG | - | chr8_1:89503262-89503281 | None:intergenic | 40.0% | |
| GGTAGAAACGATGCTTATTG+AGG | + | chr8_1:89503481-89503500 | Msa1224530:CDS | 40.0% | |
| TTGAGTAGCAAAAATGGGTC+AGG | + | chr8_1:89503687-89503706 | Msa1224530:intron | 40.0% | |
| GTGATCGACCAGATGATTAA+TGG | + | chr8_1:89503792-89503811 | Msa1224530:CDS | 40.0% | |
| AAGTGGACCCATTAATCATC+TGG | - | chr8_1:89503803-89503822 | None:intergenic | 40.0% | |
| AAGCTTGAGTGGGACAAAAT+GGG | - | chr8_1:89503886-89503905 | None:intergenic | 40.0% | |
| AAAGCTTGAGTGGGACAAAA+TGG | - | chr8_1:89503887-89503906 | None:intergenic | 40.0% | |
| GAAATCTCCAGTTGTGGTTG+TGG | + | chr8_1:89501161-89501180 | Msa1224530:CDS | 45.0% | |
| AATTTCGGAGACGACGATGA+TGG | + | chr8_1:89501221-89501240 | Msa1224530:CDS | 45.0% | |
| TATGTGGCAGTGGGAACAAA+TGG | + | chr8_1:89501383-89501402 | Msa1224530:CDS | 45.0% | |
| !! | CAAGCATGGAAGCACTTTCA+TGG | + | chr8_1:89501414-89501433 | Msa1224530:CDS | 45.0% |
| TGACTTGAGGGAAAACGTGT+AGG | - | chr8_1:89501484-89501503 | None:intergenic | 45.0% | |
| CTCAAGGGACGTCCATAATA+AGG | - | chr8_1:89502739-89502758 | None:intergenic | 45.0% | |
| ! | TGCTTTTCACTTGGGTCAAG+TGG | - | chr8_1:89503297-89503316 | None:intergenic | 45.0% |
| TGACCCAAGTGAAAAGCAAG+AGG | + | chr8_1:89503299-89503318 | Msa1224530:CDS | 45.0% | |
| AAGCCATTGTGGACCTTGTA+GGG | + | chr8_1:89503519-89503538 | Msa1224530:CDS | 45.0% | |
| ATTCCCTACAAGGTCCACAA+TGG | - | chr8_1:89503525-89503544 | None:intergenic | 45.0% | |
| GCAAAATTCCATTGCGGACA+TGG | + | chr8_1:89503713-89503732 | Msa1224530:CDS | 45.0% | |
| TTTGAACACCATGTCCGCAA+TGG | - | chr8_1:89503724-89503743 | None:intergenic | 45.0% | |
| TGTGGAACTGCTACTGTTTC+TGG | - | chr8_1:89503841-89503860 | None:intergenic | 45.0% | |
| TGGGCATCAAAAGCTTGAGT+GGG | - | chr8_1:89503896-89503915 | None:intergenic | 45.0% | |
| TTGGGCATCAAAAGCTTGAG+TGG | - | chr8_1:89503897-89503916 | None:intergenic | 45.0% | |
| ! | AGGTGTCACGGCATGTTTCA+AGG | - | chr8_1:89501441-89501460 | None:intergenic | 50.0% |
| !!! | GTTTTGAAGAGGAACGTGGG+TGG | + | chr8_1:89502266-89502285 | Msa1224530:intron | 50.0% |
| CAACGTTGCTGAAGCCATTG+TGG | + | chr8_1:89503508-89503527 | Msa1224530:CDS | 50.0% | |
| GAAGCCATTGTGGACCTTGT+AGG | + | chr8_1:89503518-89503537 | Msa1224530:CDS | 50.0% | |
| GTGGCAGTGGGAACAAATGG+TGG | + | chr8_1:89501386-89501405 | Msa1224530:CDS | 55.0% | |
| ! | CTCTTCGGTGCACACTTGCT+TGG | + | chr8_1:89502896-89502915 | Msa1224530:intron | 55.0% |
| !! | CTAGAGGAGCGTTGGGAGCG+TGG | - | chr8_1:89502698-89502717 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 89501050 | 89504103 | 89501050 | ID=Msa1224530;Name=Msa1224530 |
| chr8_1 | mRNA | 89501050 | 89504103 | 89501050 | ID=Msa1224530-mRNA-1;Parent=Msa1224530;Name=Msa1224530-mRNA-1;_AED=0.27;_eAED=0.27;_QI=57|1|1|1|1|1|4|144|305 |
| chr8_1 | exon | 89501050 | 89501521 | 89501050 | ID=Msa1224530-mRNA-1:exon:32504;Parent=Msa1224530-mRNA-1 |
| chr8_1 | exon | 89503248 | 89503366 | 89503248 | ID=Msa1224530-mRNA-1:exon:32505;Parent=Msa1224530-mRNA-1 |
| chr8_1 | exon | 89503476 | 89503594 | 89503476 | ID=Msa1224530-mRNA-1:exon:32506;Parent=Msa1224530-mRNA-1 |
| chr8_1 | exon | 89503695 | 89504103 | 89503695 | ID=Msa1224530-mRNA-1:exon:32507;Parent=Msa1224530-mRNA-1 |
| chr8_1 | five_prime_UTR | 89501050 | 89501106 | 89501050 | ID=Msa1224530-mRNA-1:five_prime_utr;Parent=Msa1224530-mRNA-1 |
| chr8_1 | CDS | 89501107 | 89501521 | 89501107 | ID=Msa1224530-mRNA-1:cds;Parent=Msa1224530-mRNA-1 |
| chr8_1 | CDS | 89503248 | 89503366 | 89503248 | ID=Msa1224530-mRNA-1:cds;Parent=Msa1224530-mRNA-1 |
| chr8_1 | CDS | 89503476 | 89503594 | 89503476 | ID=Msa1224530-mRNA-1:cds;Parent=Msa1224530-mRNA-1 |
| chr8_1 | CDS | 89503695 | 89503959 | 89503695 | ID=Msa1224530-mRNA-1:cds;Parent=Msa1224530-mRNA-1 |
| chr8_1 | three_prime_UTR | 89503960 | 89504103 | 89503960 | ID=Msa1224530-mRNA-1:three_prime_utr;Parent=Msa1224530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
