Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333780 | sp|Q9SW11|PUB35_ARATH | 29.299 | 157 | 105 | 2 | 95 | 250 | 22 | 173 | 1.75e-14 | 77.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333780 | G7ZZT9 | 90.645 | 310 | 21 | 5 | 1 | 306 | 8 | 313 | 0.0 | 535 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0692650 | Msa1333780 | 0.802598 | 5.199150e-49 | -8.615850e-47 |
| Msa0746360 | Msa1333780 | 0.920055 | 2.076290e-87 | -8.615850e-47 |
| Msa1023310 | Msa1333780 | 0.808247 | 3.402155e-50 | -8.615850e-47 |
| Msa1224530 | Msa1333780 | 0.897007 | 2.134267e-76 | -8.615850e-47 |
| Msa0882500 | Msa1333780 | 0.809864 | 1.532645e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333780 | MtrunA17_Chr4g0076471 | 90.645 | 310 | 21 | 5 | 1 | 306 | 8 | 313 | 0.0 | 535 |
| Msa1333780 | MtrunA17_Chr4g0076451 | 48.588 | 177 | 82 | 5 | 93 | 262 | 50 | 224 | 5.12e-42 | 145 |
| Msa1333780 | MtrunA17_Chr4g0058581 | 36.957 | 184 | 101 | 6 | 86 | 266 | 109 | 280 | 2.53e-29 | 113 |
| Msa1333780 | MtrunA17_Chr4g0070941 | 30.052 | 193 | 122 | 8 | 95 | 282 | 7 | 191 | 4.51e-17 | 81.6 |
| Msa1333780 | MtrunA17_Chr2g0328101 | 31.677 | 161 | 101 | 4 | 93 | 252 | 31 | 183 | 7.54e-17 | 81.3 |
| Msa1333780 | MtrunA17_Chr3g0079031 | 29.050 | 179 | 117 | 4 | 86 | 260 | 9 | 181 | 6.53e-12 | 66.2 |
| Msa1333780 | MtrunA17_Chr3g0079051 | 26.875 | 160 | 112 | 3 | 95 | 253 | 24 | 179 | 2.87e-11 | 64.3 |
| Msa1333780 | MtrunA17_Chr7g0247831 | 24.224 | 161 | 118 | 2 | 89 | 249 | 48 | 204 | 3.36e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333780 | AT5G47740.1 | 43.415 | 205 | 104 | 7 | 63 | 264 | 21 | 216 | 3.22e-46 | 156 |
| Msa1333780 | AT5G47740.2 | 42.995 | 207 | 104 | 8 | 63 | 264 | 21 | 218 | 2.57e-44 | 151 |
| Msa1333780 | AT2G19410.2 | 28.652 | 178 | 117 | 5 | 101 | 271 | 37 | 211 | 6.91e-16 | 78.6 |
| Msa1333780 | AT4G25160.1 | 29.299 | 157 | 105 | 2 | 95 | 250 | 22 | 173 | 1.78e-15 | 77.4 |
| Msa1333780 | AT2G45910.2 | 26.708 | 161 | 114 | 2 | 89 | 249 | 43 | 199 | 5.49e-14 | 72.8 |
| Msa1333780 | AT2G45910.1 | 26.708 | 161 | 114 | 2 | 89 | 249 | 43 | 199 | 5.49e-14 | 72.8 |
| Msa1333780 | AT5G51270.2 | 28.662 | 157 | 105 | 2 | 95 | 249 | 34 | 185 | 2.04e-11 | 65.1 |
| Msa1333780 | AT5G51270.1 | 28.662 | 157 | 105 | 2 | 95 | 249 | 34 | 185 | 2.04e-11 | 65.1 |
| Msa1333780 | AT5G65500.2 | 30.055 | 183 | 123 | 4 | 73 | 252 | 2 | 182 | 2.89e-11 | 64.7 |
| Msa1333780 | AT5G65500.1 | 30.601 | 183 | 120 | 5 | 73 | 252 | 2 | 180 | 8.13e-11 | 63.2 |
Find 65 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAATAACCATGATAAAT+TGG | 0.121575 | 8_4:-54032637 | None:intergenic |
| TGTGGAACTGCTACTGTTTC+TGG | 0.142547 | 8_4:-54032562 | None:intergenic |
| CCAATTTATCATGGTTATTT+AGG | 0.173104 | 8_4:+54032637 | Msa1333780:CDS |
| TGTATATACAAGAATAATTT+TGG | 0.184647 | 8_4:+54032698 | Msa1333780:three_prime_UTR |
| AAAGCTTGAGTGGGACAAAA+TGG | 0.270855 | 8_4:-54032608 | None:intergenic |
| CAAGTGTTTGATTACAATTT+CGG | 0.312597 | 8_4:+54029923 | Msa1333780:CDS |
| GTGATCGACCAGATGATTAA+TGG | 0.319312 | 8_4:+54032516 | Msa1333780:CDS |
| GTTACCTTAGATTATTAGAT+TGG | 0.320558 | 8_4:-54032301 | None:intergenic |
| CTACCCAATCTAATAATCTA+AGG | 0.338317 | 8_4:+54032297 | Msa1333780:CDS |
| GAATCTAAATATAAGGAAAT+TGG | 0.342523 | 8_4:+54032265 | Msa1333780:CDS |
| TTTGAAGAAGGAAAGTAGAT+TGG | 0.355768 | 8_4:+54029991 | Msa1333780:CDS |
| TTGTAGGGAATCTAAATATA+AGG | 0.359391 | 8_4:+54032258 | Msa1333780:CDS |
| CAAGCATGGAAGCACTTTCA+TGG | 0.384069 | 8_4:+54030134 | Msa1333780:CDS |
| TGTAACCAAGTGATTGAGAT+TGG | 0.384205 | 8_4:+54032732 | Msa1333780:three_prime_UTR |
| AATAAAACCACAACCACAAC+TGG | 0.394819 | 8_4:-54029885 | None:intergenic |
| TCTTGAATATCATGCTTAGT+TGG | 0.411358 | 8_4:-54029827 | None:intergenic |
| TTGGAATTAGTTTGACTTGA+GGG | 0.414606 | 8_4:-54030213 | None:intergenic |
| AAGTGGACCCATTAATCATC+TGG | 0.419370 | 8_4:-54032524 | None:intergenic |
| CTAAATAACCATGATAAATT+GGG | 0.423603 | 8_4:-54032636 | None:intergenic |
| GCAAAATTCCATTGCGGACA+TGG | 0.426337 | 8_4:+54032437 | Msa1333780:CDS |
| AGAGAAACAGTAGTTGTAGA+AGG | 0.431084 | 8_4:-54030178 | None:intergenic |
| GAAATCTCCAGTTGTGGTTG+TGG | 0.445667 | 8_4:+54029878 | Msa1333780:CDS |
| TGATCGACCAGATGATTAAT+GGG | 0.456946 | 8_4:+54032517 | Msa1333780:CDS |
| AATATAAGGAAATTGGTGAT+TGG | 0.458551 | 8_4:+54032272 | Msa1333780:CDS |
| GTTTGAGATAAATTTGAAGA+AGG | 0.464932 | 8_4:+54029979 | Msa1333780:CDS |
| GAAGCCATTGTGGACCTTGT+AGG | 0.467590 | 8_4:+54032242 | Msa1333780:CDS |
| TGAGAGTACTTACATGGAGT+TGG | 0.469288 | 8_4:-54030232 | None:intergenic |
| TCTGTAATATTCACTCATCT+TGG | 0.476127 | 8_4:-54032675 | None:intergenic |
| AGGTGTCACGGCATGTTTCA+AGG | 0.477649 | 8_4:-54030158 | None:intergenic |
| TTACCTTAGATTATTAGATT+GGG | 0.480669 | 8_4:-54032300 | None:intergenic |
| GGTAGAAACGATGCTTATTG+AGG | 0.487398 | 8_4:+54032205 | Msa1333780:CDS |
| AAGCTTGAGTGGGACAAAAT+GGG | 0.501117 | 8_4:-54032607 | None:intergenic |
| TTATATTTAGATTCCCTACA+AGG | 0.503404 | 8_4:-54032256 | None:intergenic |
| AAGCCATTGTGGACCTTGTA+GGG | 0.505067 | 8_4:+54032243 | Msa1333780:CDS |
| TATAGATGATGTTGTTTATG+TGG | 0.505857 | 8_4:+54030087 | Msa1333780:CDS |
| GAAGCTATGTATTGAATCAA+AGG | 0.507814 | 8_4:+54032069 | Msa1333780:CDS |
| GTAGAAACGATGCTTATTGA+GGG | 0.508850 | 8_4:+54032206 | Msa1333780:CDS |
| CGAAATTGTAATCAAACACT+TGG | 0.523720 | 8_4:-54029922 | None:intergenic |
| TTCGGAGACGACGACGATGA+TGG | 0.523895 | 8_4:+54029941 | Msa1333780:CDS |
| CTCTACTTGATGAGAAATTG+TGG | 0.527299 | 8_4:-54032580 | None:intergenic |
| ATTGGATTCAATAAGAGAAG+AGG | 0.530259 | 8_4:+54030009 | Msa1333780:CDS |
| ATTACAGGTGTTGGCTGTGA+TGG | 0.533973 | 8_4:-54032818 | None:intergenic |
| CACAATTTCTCATCAAGTAG+AGG | 0.536462 | 8_4:+54032581 | Msa1333780:CDS |
| TCTAGATTTACACGACTCCT+TGG | 0.549421 | 8_4:-54031983 | None:intergenic |
| GATATCCAATCTCAATCACT+TGG | 0.550413 | 8_4:-54032737 | None:intergenic |
| TATGTGGCAGTGGGAACAAA+TGG | 0.556548 | 8_4:+54030103 | Msa1333780:CDS |
| TGATGTTGTTTATGTGGCAG+TGG | 0.557388 | 8_4:+54030093 | Msa1333780:CDS |
| AAATAGTAGGAAAGATTCCA+AGG | 0.561559 | 8_4:+54031966 | Msa1333780:intron |
| TTTGAACACCATGTCCGCAA+TGG | 0.562956 | 8_4:-54032445 | None:intergenic |
| ATAGCTTCATGAATTTCTGA+AGG | 0.578929 | 8_4:-54032054 | None:intergenic |
| TTGGGCATCAAAAGCTTGAG+TGG | 0.580087 | 8_4:-54032618 | None:intergenic |
| GTTGGAATTAGTTTGACTTG+AGG | 0.589120 | 8_4:-54030214 | None:intergenic |
| CAACGTTGCTGAAGCCATTG+TGG | 0.592251 | 8_4:+54032232 | Msa1333780:CDS |
| TGACTTGAGGGAAAACGTGT+AGG | 0.604542 | 8_4:-54030201 | None:intergenic |
| AAATGGTGGAAGTTCAAGCA+TGG | 0.604604 | 8_4:+54030120 | Msa1333780:CDS |
| TGGGCATCAAAAGCTTGAGT+GGG | 0.620582 | 8_4:-54032617 | None:intergenic |
| TGACCCAAGTGAAAAGCAAG+AGG | 0.622721 | 8_4:+54032023 | Msa1333780:CDS |
| GATGTTGTTTATGTGGCAGT+GGG | 0.642705 | 8_4:+54030094 | Msa1333780:CDS |
| AGTAGTTGTAGAAGGTGTCA+CGG | 0.650946 | 8_4:-54030170 | None:intergenic |
| ATTCAATAAGAGAAGAGGAG+TGG | 0.652515 | 8_4:+54030014 | Msa1333780:CDS |
| ATTCCCTACAAGGTCCACAA+TGG | 0.658292 | 8_4:-54032246 | None:intergenic |
| GTGGCAGTGGGAACAAATGG+TGG | 0.662195 | 8_4:+54030106 | Msa1333780:CDS |
| GATGTGAAAATCATATGTGA+AGG | 0.682874 | 8_4:+54032486 | Msa1333780:CDS |
| GATGATGAAATCTCCAGTTG+TGG | 0.697511 | 8_4:+54029872 | Msa1333780:CDS |
| AGGAAAGCAAAATTCCATTG+CGG | 0.715974 | 8_4:+54032431 | Msa1333780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTAAAATTAAAAGTGTT+TGG | + | chr8_4:54030597-54030616 | Msa1333780:intron | 10.0% |
| !! | TAAATATAAAATGACATAAA+AGG | + | chr8_4:54030645-54030664 | Msa1333780:intron | 10.0% |
| !! | ATTATTTATCATATGAATTA+AGG | + | chr8_4:54030877-54030896 | Msa1333780:intron | 10.0% |
| !! | TTATTTATCATATGAATTAA+GGG | + | chr8_4:54030878-54030897 | Msa1333780:intron | 10.0% |
| !!! | ATTCTTTTTTAATTTTTTCT+TGG | - | chr8_4:54031683-54031702 | None:intergenic | 10.0% |
| !!! | TTACAAACAATTTTTTTTTT+TGG | - | chr8_4:54031925-54031944 | None:intergenic | 10.0% |
| !! | TTTCATAATCTTAAACAATT+TGG | + | chr8_4:54030273-54030292 | Msa1333780:intron | 15.0% |
| !! | TTCATAATCTTAAACAATTT+GGG | + | chr8_4:54030274-54030293 | Msa1333780:intron | 15.0% |
| !! | TGATCAATATAATATATTGT+TGG | + | chr8_4:54030448-54030467 | Msa1333780:intron | 15.0% |
| !!! | TAATATATTGTTGGATTTTA+AGG | + | chr8_4:54030457-54030476 | Msa1333780:intron | 15.0% |
| !!! | AATATATTGTTGGATTTTAA+GGG | + | chr8_4:54030458-54030477 | Msa1333780:intron | 15.0% |
| !!! | ATCTAATTAATTTTTCTCAA+GGG | - | chr8_4:54031476-54031495 | None:intergenic | 15.0% |
| !!! | TATCTAATTAATTTTTCTCA+AGG | - | chr8_4:54031477-54031496 | None:intergenic | 15.0% |
| !! | ACTCCAAATAAATATTATTT+GGG | - | chr8_4:54031774-54031793 | None:intergenic | 15.0% |
| !! | AACTCCAAATAAATATTATT+TGG | - | chr8_4:54031775-54031794 | None:intergenic | 15.0% |
| !!! | TGTATATACAAGAATAATTT+TGG | + | chr8_4:54032698-54032717 | Msa1333780:three_prime_UTR | 15.0% |
| !!! | GATTATTTAATTTGTGACTA+TGG | - | chr8_4:54030300-54030319 | None:intergenic | 20.0% |
| !! | TTTAATTGTACTTGATTACT+AGG | + | chr8_4:54030374-54030393 | Msa1333780:intron | 20.0% |
| !!! | TTGGGATTTTTTATATTCAA+AGG | + | chr8_4:54030413-54030432 | Msa1333780:intron | 20.0% |
| !!! | TAAACTTGCTTCAATATTTA+TGG | + | chr8_4:54030839-54030858 | Msa1333780:intron | 20.0% |
| !! | TTAATAAAATGTCATGTGTT+TGG | - | chr8_4:54031179-54031198 | None:intergenic | 20.0% |
| !!! | TTAAAACCTCTGTTTTTTTT+TGG | + | chr8_4:54031590-54031609 | Msa1333780:intron | 20.0% |
| !!! | TAAAACCTCTGTTTTTTTTT+GGG | + | chr8_4:54031591-54031610 | Msa1333780:intron | 20.0% |
| !!! | GTGTCAAAATATTTTTGTTT+AGG | - | chr8_4:54031652-54031671 | None:intergenic | 20.0% |
| !!! | TTTTCATGAGAGATTTTTTT+GGG | - | chr8_4:54031832-54031851 | None:intergenic | 20.0% |
| !!! | ATTTTCATGAGAGATTTTTT+TGG | - | chr8_4:54031833-54031852 | None:intergenic | 20.0% |
| !! | ATCTTGAATGTTTAAATAGT+AGG | + | chr8_4:54031953-54031972 | Msa1333780:intron | 20.0% |
| !! | AAACCTTATATATGTATTCA+TGG | + | chr8_4:54032131-54032150 | Msa1333780:intron | 20.0% |
| !! | GAATCTAAATATAAGGAAAT+TGG | + | chr8_4:54032265-54032284 | Msa1333780:CDS | 20.0% |
| !! | TTACCTTAGATTATTAGATT+GGG | - | chr8_4:54032303-54032322 | None:intergenic | 20.0% |
| !! | CTAAATAACCATGATAAATT+GGG | - | chr8_4:54032639-54032658 | None:intergenic | 20.0% |
| ! | CAAGTGTTTGATTACAATTT+CGG | + | chr8_4:54029923-54029942 | Msa1333780:CDS | 25.0% |
| !! | GTTTGAGATAAATTTGAAGA+AGG | + | chr8_4:54029979-54029998 | Msa1333780:CDS | 25.0% |
| !! | TATAGATGATGTTGTTTATG+TGG | + | chr8_4:54030087-54030106 | Msa1333780:CDS | 25.0% |
| !!! | AATTAATGAGAGTACTTACA+TGG | - | chr8_4:54030241-54030260 | None:intergenic | 25.0% |
| !!! | AGGAATTTTAAAATCGTTGT+TGG | + | chr8_4:54030394-54030413 | Msa1333780:intron | 25.0% |
| !!! | GGAATTTTAAAATCGTTGTT+GGG | + | chr8_4:54030395-54030414 | Msa1333780:intron | 25.0% |
| !!! | TCTTGTTTTTTGTTTTGAAG+AGG | + | chr8_4:54030979-54030998 | Msa1333780:intron | 25.0% |
| ! | ATTCGTAATAGATAGATATG+AGG | - | chr8_4:54031283-54031302 | None:intergenic | 25.0% |
| ! | TCATATCTATCTATTACGAA+TGG | + | chr8_4:54031282-54031301 | Msa1333780:intron | 25.0% |
| ! | TCAAGAACAGTCTAATAATA+TGG | - | chr8_4:54031386-54031405 | None:intergenic | 25.0% |
| ! | ACAATTAAAGTCATCAACTA+AGG | - | chr8_4:54031552-54031571 | None:intergenic | 25.0% |
| !! | TTGATGACTTTAATTGTACT+TGG | + | chr8_4:54031555-54031574 | Msa1333780:intron | 25.0% |
| ! | TTTAATTGTACTTGGTTTCT+AGG | + | chr8_4:54031563-54031582 | Msa1333780:intron | 25.0% |
| ! | GTGCCCAAATAATATTTATT+TGG | + | chr8_4:54031768-54031787 | Msa1333780:intron | 25.0% |
| ! | ACTAAATCCTTCATTTCAAA+AGG | + | chr8_4:54032094-54032113 | Msa1333780:intron | 25.0% |
| ! | ACTCCATGAATACATATATA+AGG | - | chr8_4:54032137-54032156 | None:intergenic | 25.0% |
| ! | TTATATTTAGATTCCCTACA+AGG | - | chr8_4:54032259-54032278 | None:intergenic | 25.0% |
| ! | TTGTAGGGAATCTAAATATA+AGG | + | chr8_4:54032258-54032277 | Msa1333780:CDS | 25.0% |
| !! | AATATAAGGAAATTGGTGAT+TGG | + | chr8_4:54032272-54032291 | Msa1333780:CDS | 25.0% |
| ! | GTTACCTTAGATTATTAGAT+TGG | - | chr8_4:54032304-54032323 | None:intergenic | 25.0% |
| ! | TGAATATTGAGTAGCAAAAA+TGG | + | chr8_4:54032405-54032424 | Msa1333780:intron | 25.0% |
| ! | GAATATTGAGTAGCAAAAAT+GGG | + | chr8_4:54032406-54032425 | Msa1333780:intron | 25.0% |
| ! | CCTAAATAACCATGATAAAT+TGG | - | chr8_4:54032640-54032659 | None:intergenic | 25.0% |
| ! | CCAATTTATCATGGTTATTT+AGG | + | chr8_4:54032637-54032656 | Msa1333780:CDS | 25.0% |
| ! | TTTTGTAGACGAAAAATCGA+AGG | - | chr8_4:54029793-54029812 | None:intergenic | 30.0% |
| TCTTGAATATCATGCTTAGT+TGG | - | chr8_4:54029830-54029849 | None:intergenic | 30.0% | |
| CGAAATTGTAATCAAACACT+TGG | - | chr8_4:54029925-54029944 | None:intergenic | 30.0% | |
| TTTGAAGAAGGAAAGTAGAT+TGG | + | chr8_4:54029991-54030010 | Msa1333780:CDS | 30.0% | |
| ATTGGATTCAATAAGAGAAG+AGG | + | chr8_4:54030009-54030028 | Msa1333780:CDS | 30.0% | |
| !! | TTGGAATTAGTTTGACTTGA+GGG | - | chr8_4:54030216-54030235 | None:intergenic | 30.0% |
| ACAATTAAAGTCAGCTCTTA+TGG | - | chr8_4:54030363-54030382 | None:intergenic | 30.0% | |
| TATCATATGAATTAAGGGCA+AGG | + | chr8_4:54030883-54030902 | Msa1333780:intron | 30.0% | |
| AAAGCAGTACAGTACTAAAA+CGG | + | chr8_4:54030938-54030957 | Msa1333780:intron | 30.0% | |
| TGTAACCCAAAAAAAAACAG+AGG | - | chr8_4:54031599-54031618 | None:intergenic | 30.0% | |
| !!! | TTTTTTTGGGTTACACTCTT+CGG | + | chr8_4:54031604-54031623 | Msa1333780:intron | 30.0% |
| !!! | ATGAGAGATTTTTTTGGGAA+TGG | - | chr8_4:54031827-54031846 | None:intergenic | 30.0% |
| AAATAGTAGGAAAGATTCCA+AGG | + | chr8_4:54031966-54031985 | Msa1333780:intron | 30.0% | |
| ATAGCTTCATGAATTTCTGA+AGG | - | chr8_4:54032057-54032076 | None:intergenic | 30.0% | |
| GAAGCTATGTATTGAATCAA+AGG | + | chr8_4:54032069-54032088 | Msa1333780:CDS | 30.0% | |
| !!! | GATGTATCCTTTTGAAATGA+AGG | - | chr8_4:54032104-54032123 | None:intergenic | 30.0% |
| GTACCAGTAGTAATAATGAA+AGG | + | chr8_4:54032166-54032185 | Msa1333780:intron | 30.0% | |
| TAGCCTTTCATTATTACTAC+TGG | - | chr8_4:54032172-54032191 | None:intergenic | 30.0% | |
| ATAATGAAAGGCTAACATAC+AGG | + | chr8_4:54032178-54032197 | Msa1333780:intron | 30.0% | |
| CTACCCAATCTAATAATCTA+AGG | + | chr8_4:54032297-54032316 | Msa1333780:CDS | 30.0% | |
| ACATGAGTTGTTTGTAGAAA+AGG | - | chr8_4:54032330-54032349 | None:intergenic | 30.0% | |
| GATGTGAAAATCATATGTGA+AGG | + | chr8_4:54032486-54032505 | Msa1333780:CDS | 30.0% | |
| ! | TTTTGATGCCCAATTTATCA+TGG | + | chr8_4:54032628-54032647 | Msa1333780:CDS | 30.0% |
| ! | TCATCTTGGTGATAAAAATC+TGG | - | chr8_4:54032664-54032683 | None:intergenic | 30.0% |
| TCTGTAATATTCACTCATCT+TGG | - | chr8_4:54032678-54032697 | None:intergenic | 30.0% | |
| AATAAAACCACAACCACAAC+TGG | - | chr8_4:54029888-54029907 | None:intergenic | 35.0% | |
| !!! | AGTTGTGGTTGTGGTTTTAT+TGG | + | chr8_4:54029887-54029906 | Msa1333780:CDS | 35.0% |
| !!! | GTTGTGGTTGTGGTTTTATT+GGG | + | chr8_4:54029888-54029907 | Msa1333780:CDS | 35.0% |
| ATTCAATAAGAGAAGAGGAG+TGG | + | chr8_4:54030014-54030033 | Msa1333780:CDS | 35.0% | |
| AGAGAAACAGTAGTTGTAGA+AGG | - | chr8_4:54030181-54030200 | None:intergenic | 35.0% | |
| !! | GTTGGAATTAGTTTGACTTG+AGG | - | chr8_4:54030217-54030236 | None:intergenic | 35.0% |
| ATGGCATGAAAAATGAGTTC+AGG | - | chr8_4:54030344-54030363 | None:intergenic | 35.0% | |
| !! | TTGGATTTTAAGGGTGTGTT+TGG | + | chr8_4:54030467-54030486 | Msa1333780:intron | 35.0% |
| ! | AAAAGCTAGCTTATAGCTGA+TGG | + | chr8_4:54030540-54030559 | Msa1333780:intron | 35.0% |
| !!! | TTTTGTTTTGAAGAGGAACG+TGG | + | chr8_4:54030986-54031005 | Msa1333780:intron | 35.0% |
| !!! | TTTGTTTTGAAGAGGAACGT+GGG | + | chr8_4:54030987-54031006 | Msa1333780:intron | 35.0% |
| TGGGTGGTTATATTAGAAAG+CGG | + | chr8_4:54031006-54031025 | Msa1333780:intron | 35.0% | |
| ! | TAAGCTAGCTTATAGCTTGT+TGG | - | chr8_4:54031221-54031240 | None:intergenic | 35.0% |
| AGATTAACTAGGGGAGTAAT+GGG | - | chr8_4:54031348-54031367 | None:intergenic | 35.0% | |
| TAGATTAACTAGGGGAGTAA+TGG | - | chr8_4:54031349-54031368 | None:intergenic | 35.0% | |
| TCCAACGTTAGATTAACTAG+GGG | - | chr8_4:54031357-54031376 | None:intergenic | 35.0% | |
| GTCCAACGTTAGATTAACTA+GGG | - | chr8_4:54031358-54031377 | None:intergenic | 35.0% | |
| TGTCCAACGTTAGATTAACT+AGG | - | chr8_4:54031359-54031378 | None:intergenic | 35.0% | |
| !! | ATTAAACTAAGAGGAGCGTT+GGG | - | chr8_4:54031426-54031445 | None:intergenic | 35.0% |
| CTGTCCAACATTAAACTAAG+AGG | - | chr8_4:54031435-54031454 | None:intergenic | 35.0% | |
| AGGCATGGAAAATGAAATCA+GGG | - | chr8_4:54031532-54031551 | None:intergenic | 35.0% | |
| AAGGCATGGAAAATGAAATC+AGG | - | chr8_4:54031533-54031552 | None:intergenic | 35.0% | |
| TAAAGTCATCAACTAAGGCA+TGG | - | chr8_4:54031547-54031566 | None:intergenic | 35.0% | |
| !! | TTTCCTCTTGCTTTTCACTT+GGG | - | chr8_4:54032029-54032048 | None:intergenic | 35.0% |
| !! | ATTTCCTCTTGCTTTTCACT+TGG | - | chr8_4:54032030-54032049 | None:intergenic | 35.0% |
| AAAGGCTAACATACAGGTTA+AGG | + | chr8_4:54032184-54032203 | Msa1333780:intron | 35.0% | |
| GTAGAAACGATGCTTATTGA+GGG | + | chr8_4:54032206-54032225 | Msa1333780:CDS | 35.0% | |
| AGGAAAGCAAAATTCCATTG+CGG | + | chr8_4:54032431-54032450 | Msa1333780:CDS | 35.0% | |
| TGATCGACCAGATGATTAAT+GGG | + | chr8_4:54032517-54032536 | Msa1333780:CDS | 35.0% | |
| !!! | GGTGTGTTTTGATTTTGAAG+TGG | - | chr8_4:54032544-54032563 | None:intergenic | 35.0% |
| CTCTACTTGATGAGAAATTG+TGG | - | chr8_4:54032583-54032602 | None:intergenic | 35.0% | |
| CACAATTTCTCATCAAGTAG+AGG | + | chr8_4:54032581-54032600 | Msa1333780:CDS | 35.0% | |
| TGTAACCAAGTGATTGAGAT+TGG | + | chr8_4:54032732-54032751 | Msa1333780:three_prime_UTR | 35.0% | |
| GATATCCAATCTCAATCACT+TGG | - | chr8_4:54032740-54032759 | None:intergenic | 35.0% | |
| GATGATGAAATCTCCAGTTG+TGG | + | chr8_4:54029872-54029891 | Msa1333780:CDS | 40.0% | |
| ! | TGATGTTGTTTATGTGGCAG+TGG | + | chr8_4:54030093-54030112 | Msa1333780:CDS | 40.0% |
| ! | GATGTTGTTTATGTGGCAGT+GGG | + | chr8_4:54030094-54030113 | Msa1333780:CDS | 40.0% |
| ! | AAATGGTGGAAGTTCAAGCA+TGG | + | chr8_4:54030120-54030139 | Msa1333780:CDS | 40.0% |
| !! | AGTAGTTGTAGAAGGTGTCA+CGG | - | chr8_4:54030173-54030192 | None:intergenic | 40.0% |
| !! | TGAGAGTACTTACATGGAGT+TGG | - | chr8_4:54030235-54030254 | None:intergenic | 40.0% |
| ATTCACACTTAGGCTGTGTT+TGG | - | chr8_4:54031253-54031272 | None:intergenic | 40.0% | |
| AGGCACAATCATTCACACTT+AGG | - | chr8_4:54031263-54031282 | None:intergenic | 40.0% | |
| TCCCCTAGTTAATCTAACGT+TGG | + | chr8_4:54031353-54031372 | Msa1333780:intron | 40.0% | |
| ! | CATTAAACTAAGAGGAGCGT+TGG | - | chr8_4:54031427-54031446 | None:intergenic | 40.0% |
| CGCTCCTCTTAGTTTAATGT+TGG | + | chr8_4:54031428-54031447 | Msa1333780:intron | 40.0% | |
| GTTGGACAGAGTCCTTATTA+TGG | + | chr8_4:54031446-54031465 | Msa1333780:intron | 40.0% | |
| TCTAGATTTACACGACTCCT+TGG | - | chr8_4:54031986-54032005 | None:intergenic | 40.0% | |
| GGTAGAAACGATGCTTATTG+AGG | + | chr8_4:54032205-54032224 | Msa1333780:CDS | 40.0% | |
| TTGAGTAGCAAAAATGGGTC+AGG | + | chr8_4:54032411-54032430 | Msa1333780:intron | 40.0% | |
| GTGATCGACCAGATGATTAA+TGG | + | chr8_4:54032516-54032535 | Msa1333780:CDS | 40.0% | |
| AAGTGGACCCATTAATCATC+TGG | - | chr8_4:54032527-54032546 | None:intergenic | 40.0% | |
| AAGCTTGAGTGGGACAAAAT+GGG | - | chr8_4:54032610-54032629 | None:intergenic | 40.0% | |
| AAAGCTTGAGTGGGACAAAA+TGG | - | chr8_4:54032611-54032630 | None:intergenic | 40.0% | |
| GAAATCTCCAGTTGTGGTTG+TGG | + | chr8_4:54029878-54029897 | Msa1333780:CDS | 45.0% | |
| TATGTGGCAGTGGGAACAAA+TGG | + | chr8_4:54030103-54030122 | Msa1333780:CDS | 45.0% | |
| !! | CAAGCATGGAAGCACTTTCA+TGG | + | chr8_4:54030134-54030153 | Msa1333780:CDS | 45.0% |
| TGACTTGAGGGAAAACGTGT+AGG | - | chr8_4:54030204-54030223 | None:intergenic | 45.0% | |
| CTCAAGGGACGTCCATAATA+AGG | - | chr8_4:54031461-54031480 | None:intergenic | 45.0% | |
| ! | TGCTTTTCACTTGGGTCAAG+TGG | - | chr8_4:54032021-54032040 | None:intergenic | 45.0% |
| TGACCCAAGTGAAAAGCAAG+AGG | + | chr8_4:54032023-54032042 | Msa1333780:CDS | 45.0% | |
| AAGCCATTGTGGACCTTGTA+GGG | + | chr8_4:54032243-54032262 | Msa1333780:CDS | 45.0% | |
| ATTCCCTACAAGGTCCACAA+TGG | - | chr8_4:54032249-54032268 | None:intergenic | 45.0% | |
| GCAAAATTCCATTGCGGACA+TGG | + | chr8_4:54032437-54032456 | Msa1333780:CDS | 45.0% | |
| TTTGAACACCATGTCCGCAA+TGG | - | chr8_4:54032448-54032467 | None:intergenic | 45.0% | |
| TGTGGAACTGCTACTGTTTC+TGG | - | chr8_4:54032565-54032584 | None:intergenic | 45.0% | |
| TGGGCATCAAAAGCTTGAGT+GGG | - | chr8_4:54032620-54032639 | None:intergenic | 45.0% | |
| TTGGGCATCAAAAGCTTGAG+TGG | - | chr8_4:54032621-54032640 | None:intergenic | 45.0% | |
| !! | AATAAATAAAAAGTTAAAAT+TGG | + | chr8_4:54031061-54031080 | Msa1333780:intron | 5.0% |
| ! | AGGTGTCACGGCATGTTTCA+AGG | - | chr8_4:54030161-54030180 | None:intergenic | 50.0% |
| !!! | GTTTTGAAGAGGAACGTGGG+TGG | + | chr8_4:54030990-54031009 | Msa1333780:intron | 50.0% |
| CAACGTTGCTGAAGCCATTG+TGG | + | chr8_4:54032232-54032251 | Msa1333780:CDS | 50.0% | |
| GAAGCCATTGTGGACCTTGT+AGG | + | chr8_4:54032242-54032261 | Msa1333780:CDS | 50.0% | |
| TTCGGAGACGACGACGATGA+TGG | + | chr8_4:54029941-54029960 | Msa1333780:CDS | 55.0% | |
| GTGGCAGTGGGAACAAATGG+TGG | + | chr8_4:54030106-54030125 | Msa1333780:CDS | 55.0% | |
| ! | CTCTTCGGTGCACACTTGCT+TGG | + | chr8_4:54031619-54031638 | Msa1333780:intron | 55.0% |
| !! | TAAGAGGAGCGTTGGGAGCG+TGG | - | chr8_4:54031419-54031438 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 54029767 | 54032826 | 54029767 | ID=Msa1333780;Name=Msa1333780 |
| chr8_4 | mRNA | 54029767 | 54032826 | 54029767 | ID=Msa1333780-mRNA-1;Parent=Msa1333780;Name=Msa1333780-mRNA-1;_AED=0.26;_eAED=0.26;_QI=57|1|1|1|1|1|4|143|306 |
| chr8_4 | exon | 54029767 | 54030241 | 54029767 | ID=Msa1333780-mRNA-1:exon:16762;Parent=Msa1333780-mRNA-1 |
| chr8_4 | exon | 54031972 | 54032090 | 54031972 | ID=Msa1333780-mRNA-1:exon:16763;Parent=Msa1333780-mRNA-1 |
| chr8_4 | exon | 54032200 | 54032318 | 54032200 | ID=Msa1333780-mRNA-1:exon:16764;Parent=Msa1333780-mRNA-1 |
| chr8_4 | exon | 54032419 | 54032826 | 54032419 | ID=Msa1333780-mRNA-1:exon:16765;Parent=Msa1333780-mRNA-1 |
| chr8_4 | five_prime_UTR | 54029767 | 54029823 | 54029767 | ID=Msa1333780-mRNA-1:five_prime_utr;Parent=Msa1333780-mRNA-1 |
| chr8_4 | CDS | 54029824 | 54030241 | 54029824 | ID=Msa1333780-mRNA-1:cds;Parent=Msa1333780-mRNA-1 |
| chr8_4 | CDS | 54031972 | 54032090 | 54031972 | ID=Msa1333780-mRNA-1:cds;Parent=Msa1333780-mRNA-1 |
| chr8_4 | CDS | 54032200 | 54032318 | 54032200 | ID=Msa1333780-mRNA-1:cds;Parent=Msa1333780-mRNA-1 |
| chr8_4 | CDS | 54032419 | 54032683 | 54032419 | ID=Msa1333780-mRNA-1:cds;Parent=Msa1333780-mRNA-1 |
| chr8_4 | three_prime_UTR | 54032684 | 54032826 | 54032684 | ID=Msa1333780-mRNA-1:three_prime_utr;Parent=Msa1333780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
