Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746550 | XP_013461074.1 | 90.476 | 252 | 19 | 1 | 1 | 247 | 1 | 252 | 3.63e-146 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746550 | sp|Q9ZVD2|NHL13_ARATH | 52.107 | 261 | 111 | 2 | 1 | 248 | 1 | 260 | 2.20e-96 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746550 | A0A072V156 | 90.476 | 252 | 19 | 1 | 1 | 247 | 1 | 252 | 1.74e-146 | 419 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0710810 | Msa0746550 | 0.804044 | 2.609127e-49 | -8.615850e-47 |
| Msa0746550 | Msa0810250 | 0.848689 | 5.223505e-60 | -8.615850e-47 |
| Msa0746550 | Msa0853250 | 0.803515 | 3.360759e-49 | -8.615850e-47 |
| Msa0746550 | Msa0881750 | 0.806787 | 6.942620e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746550 | MtrunA17_Chr3g0118371 | 90.476 | 252 | 19 | 1 | 1 | 247 | 1 | 252 | 3.34e-150 | 419 |
| Msa0746550 | MtrunA17_Chr5g0440571 | 63.672 | 256 | 84 | 3 | 1 | 248 | 1 | 255 | 1.59e-118 | 338 |
| Msa0746550 | MtrunA17_Chr2g0281401 | 49.615 | 260 | 109 | 5 | 1 | 241 | 1 | 257 | 1.85e-79 | 240 |
| Msa0746550 | MtrunA17_Chr3g0118381 | 67.808 | 146 | 45 | 2 | 104 | 247 | 1 | 146 | 4.78e-68 | 206 |
| Msa0746550 | MtrunA17_Chr3g0118391 | 56.784 | 199 | 84 | 2 | 43 | 241 | 4 | 200 | 5.00e-65 | 201 |
| Msa0746550 | MtrunA17_Chr1g0188801 | 32.669 | 251 | 158 | 5 | 3 | 249 | 7 | 250 | 4.10e-34 | 123 |
| Msa0746550 | MtrunA17_Chr5g0433201 | 32.197 | 264 | 161 | 6 | 1 | 247 | 1 | 263 | 1.33e-33 | 122 |
| Msa0746550 | MtrunA17_Chr3g0109121 | 36.782 | 174 | 99 | 3 | 81 | 249 | 85 | 252 | 1.08e-29 | 111 |
| Msa0746550 | MtrunA17_Chr3g0115651 | 27.876 | 226 | 142 | 7 | 13 | 230 | 16 | 228 | 2.50e-26 | 103 |
| Msa0746550 | MtrunA17_Chr8g0382431 | 28.448 | 232 | 144 | 6 | 24 | 248 | 43 | 259 | 4.72e-23 | 94.4 |
| Msa0746550 | MtrunA17_Chr4g0067041 | 30.918 | 207 | 119 | 6 | 38 | 227 | 16 | 215 | 6.01e-19 | 83.2 |
| Msa0746550 | MtrunA17_Chr3g0135711 | 27.363 | 201 | 133 | 6 | 57 | 247 | 56 | 253 | 9.14e-19 | 82.8 |
| Msa0746550 | MtrunA17_Chr2g0330241 | 27.473 | 182 | 120 | 4 | 77 | 248 | 77 | 256 | 3.30e-17 | 78.6 |
| Msa0746550 | MtrunA17_Chr7g0267281 | 25.926 | 216 | 147 | 7 | 36 | 245 | 18 | 226 | 3.98e-16 | 75.1 |
| Msa0746550 | MtrunA17_Chr2g0324111 | 26.699 | 206 | 147 | 3 | 44 | 247 | 17 | 220 | 5.38e-16 | 74.7 |
| Msa0746550 | MtrunA17_Chr2g0280851 | 27.703 | 148 | 105 | 2 | 76 | 223 | 35 | 180 | 8.46e-15 | 70.9 |
| Msa0746550 | MtrunA17_Chr1g0177471 | 26.136 | 176 | 119 | 4 | 82 | 248 | 74 | 247 | 9.19e-14 | 68.9 |
| Msa0746550 | MtrunA17_Chr7g0267231 | 28.261 | 184 | 119 | 7 | 51 | 227 | 29 | 206 | 1.20e-13 | 68.2 |
| Msa0746550 | MtrunA17_Chr8g0342091 | 25.000 | 252 | 144 | 9 | 5 | 248 | 7 | 221 | 3.59e-13 | 67.0 |
| Msa0746550 | MtrunA17_Chr7g0267301 | 28.649 | 185 | 117 | 8 | 52 | 227 | 29 | 207 | 1.26e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0746550 | AT2G27080.1 | 52.107 | 261 | 111 | 2 | 1 | 248 | 1 | 260 | 2.24e-97 | 285 |
| Msa0746550 | AT2G27080.2 | 52.107 | 261 | 111 | 2 | 1 | 248 | 1 | 260 | 2.24e-97 | 285 |
| Msa0746550 | AT5G21130.1 | 45.415 | 229 | 124 | 1 | 19 | 247 | 53 | 280 | 2.32e-70 | 218 |
| Msa0746550 | AT5G36970.1 | 33.591 | 259 | 149 | 9 | 1 | 247 | 1 | 248 | 7.51e-33 | 120 |
| Msa0746550 | AT1G65690.1 | 32.653 | 245 | 158 | 4 | 7 | 249 | 13 | 252 | 5.35e-29 | 110 |
| Msa0746550 | AT1G54540.1 | 32.143 | 252 | 153 | 7 | 1 | 247 | 1 | 239 | 5.76e-28 | 107 |
| Msa0746550 | AT2G35980.1 | 32.984 | 191 | 120 | 6 | 36 | 224 | 16 | 200 | 1.15e-23 | 95.5 |
| Msa0746550 | AT2G22180.1 | 27.966 | 236 | 140 | 8 | 19 | 245 | 75 | 289 | 2.50e-20 | 88.2 |
| Msa0746550 | AT3G11650.1 | 27.723 | 202 | 128 | 5 | 36 | 224 | 17 | 213 | 7.42e-17 | 77.8 |
| Msa0746550 | AT5G22870.1 | 25.946 | 185 | 125 | 4 | 62 | 241 | 26 | 203 | 1.54e-16 | 76.3 |
| Msa0746550 | AT5G06320.1 | 30.588 | 170 | 112 | 5 | 61 | 227 | 44 | 210 | 4.83e-16 | 75.1 |
| Msa0746550 | AT4G09590.1 | 24.468 | 188 | 138 | 3 | 60 | 247 | 20 | 203 | 3.84e-11 | 61.2 |
| Msa0746550 | AT1G17620.1 | 28.384 | 229 | 154 | 6 | 3 | 224 | 4 | 229 | 6.55e-11 | 61.2 |
| Msa0746550 | AT5G11890.1 | 28.351 | 194 | 130 | 4 | 39 | 224 | 60 | 252 | 6.93e-11 | 61.6 |
| Msa0746550 | AT3G52470.1 | 24.444 | 180 | 133 | 2 | 68 | 247 | 24 | 200 | 8.28e-11 | 60.5 |
Find 65 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGCTGTTGCTGTCTTTGC+TGG | 0.303551 | 5_1:+68974445 | Msa0746550:CDS |
| ATGCGGTAGGTTTGATCCTT+GGG | 0.329031 | 5_1:-68974360 | None:intergenic |
| GTAGTTATGAATTTGATCTT+TGG | 0.333495 | 5_1:+68974997 | Msa0746550:CDS |
| TTGGAAGGTGGAGAGGCGTT+AGG | 0.343094 | 5_1:-68974294 | None:intergenic |
| ATCGTGTATTTCGGTGCTTC+CGG | 0.360839 | 5_1:-68974540 | None:intergenic |
| GACGTGGAAGGTTAGAGTTA+AGG | 0.387882 | 5_1:+68974914 | Msa0746550:CDS |
| AGGTTTGATCCTTGGGGAGC+TGG | 0.388163 | 5_1:-68974353 | None:intergenic |
| ACACGATCGATCGTGTATTT+CGG | 0.396195 | 5_1:-68974549 | None:intergenic |
| GTGCTCATGGCCATCGCTGC+TGG | 0.406887 | 5_1:+68974495 | Msa0746550:CDS |
| CGGCGGCGATGGAGCGGTGT+TGG | 0.430905 | 5_1:-68974313 | None:intergenic |
| GATGCGGTAGGTTTGATCCT+TGG | 0.434091 | 5_1:-68974361 | None:intergenic |
| CGGTATCGAACTTGCGAGAT+CGG | 0.437793 | 5_1:+68974794 | Msa0746550:CDS |
| GCGTAACGTTGTGCATTCTC+TGG | 0.446865 | 5_1:-68974390 | None:intergenic |
| ACCGCTCCATCGCCGCCGTC+CGG | 0.448630 | 5_1:+68974318 | Msa0746550:CDS |
| TGTTAGGTTCATTCCCTTGA+CGG | 0.454596 | 5_1:-68974574 | None:intergenic |
| TGCTGTCTTTGCTGGTTCAT+CGG | 0.470949 | 5_1:+68974453 | Msa0746550:CDS |
| AAATAGTAGATAAAGATGTT+AGG | 0.480050 | 5_1:-68974590 | None:intergenic |
| CGTTGTGCATTCTCTGGTGG+TGG | 0.481192 | 5_1:-68974384 | None:intergenic |
| TGGAAGGTGGAGAGGCGTTA+GGG | 0.484091 | 5_1:-68974293 | None:intergenic |
| GTTTCTGTTAAAGCTGATAA+CGG | 0.484250 | 5_1:+68974627 | Msa0746550:CDS |
| GGCGATGGAGCGGTGTTGGA+AGG | 0.486020 | 5_1:-68974309 | None:intergenic |
| ATTTACTCTGATCGTGCTCA+TGG | 0.493417 | 5_1:+68974482 | Msa0746550:CDS |
| CTCTGGTGGTGGGATGCGGT+AGG | 0.506358 | 5_1:-68974373 | None:intergenic |
| AGCGTTGGTGAATGCGGTTA+CGG | 0.509259 | 5_1:+68974824 | Msa0746550:CDS |
| GAGCTGGATGACATATGTTC+CGG | 0.509609 | 5_1:-68974337 | None:intergenic |
| GCTCTCAGCTTCAACGTTAA+CGG | 0.515780 | 5_1:-68974858 | None:intergenic |
| CCTCCAACTTTAATCTTCAC+CGG | 0.526185 | 5_1:-68974882 | None:intergenic |
| CATTCTCTGGTGGTGGGATG+CGG | 0.527360 | 5_1:-68974377 | None:intergenic |
| ATCGATCGTGTCTCCGTCAA+GGG | 0.528651 | 5_1:+68974561 | Msa0746550:CDS |
| TATGTTCCGGACGGCGGCGA+TGG | 0.535007 | 5_1:-68974324 | None:intergenic |
| TCTAACGGTGGATCAGTTAA+CGG | 0.540813 | 5_1:+68974947 | Msa0746550:CDS |
| TCCGGACGGCGGCGATGGAG+CGG | 0.543871 | 5_1:-68974319 | None:intergenic |
| GCACCGGTGAAGATTAAAGT+TGG | 0.544024 | 5_1:+68974879 | Msa0746550:CDS |
| GGGTGAACACGATCAGCCAT+TGG | 0.548503 | 5_1:-68974273 | None:intergenic |
| GACAGCAACAGCATCCGCAC+CGG | 0.556268 | 5_1:-68974437 | None:intergenic |
| GATCGATCGTGTCTCCGTCA+AGG | 0.566932 | 5_1:+68974560 | Msa0746550:CDS |
| GTGTTTCAGACGGTGTTGAA+AGG | 0.576347 | 5_1:+68974768 | Msa0746550:CDS |
| CAGACGGTGTTGAAAGGTAA+CGG | 0.582614 | 5_1:+68974774 | Msa0746550:CDS |
| GGTGGATCAGTTAACGGCGC+AGG | 0.585762 | 5_1:+68974953 | Msa0746550:CDS |
| TCAGAGAGCGTTGGTGAATG+CGG | 0.587887 | 5_1:+68974818 | Msa0746550:CDS |
| AACGTTGAAGCTGAGAGCAC+CGG | 0.589685 | 5_1:+68974863 | Msa0746550:CDS |
| GATGGAGCGGTGTTGGAAGG+TGG | 0.592952 | 5_1:-68974306 | None:intergenic |
| CCGGTGAAGATTAAAGTTGG+AGG | 0.596076 | 5_1:+68974882 | Msa0746550:CDS |
| TAATGTGACGGTGTTTCAGA+CGG | 0.598271 | 5_1:+68974758 | Msa0746550:CDS |
| AGCGGTGTTGGAAGGTGGAG+AGG | 0.599059 | 5_1:-68974301 | None:intergenic |
| CGCCGCAAAAGTCGCCGGTG+CGG | 0.603490 | 5_1:+68974423 | Msa0746550:CDS |
| ACACTCGCCGCAAAAGTCGC+CGG | 0.610216 | 5_1:+68974418 | Msa0746550:CDS |
| TAAGGTTGACTGTGATCTAA+CGG | 0.613562 | 5_1:+68974932 | Msa0746550:CDS |
| TTTAACAGAAACATCAAACT+CGG | 0.615677 | 5_1:-68974616 | None:intergenic |
| TGCGGTAGGTTTGATCCTTG+GGG | 0.618357 | 5_1:-68974359 | None:intergenic |
| GCAGGCGAAGATTGTTGACA+AGG | 0.624423 | 5_1:+68974971 | Msa0746550:CDS |
| GTTGTGCATTCTCTGGTGGT+GGG | 0.643760 | 5_1:-68974383 | None:intergenic |
| TAACGTTGTGCATTCTCTGG+TGG | 0.648494 | 5_1:-68974387 | None:intergenic |
| AACACCGTCACATTATTCGA+CGG | 0.648636 | 5_1:-68974750 | None:intergenic |
| TTGGAGGATCTGTGAAGACG+TGG | 0.649777 | 5_1:+68974898 | Msa0746550:CDS |
| TTAACAGAAACATCAAACTC+GGG | 0.650957 | 5_1:-68974615 | None:intergenic |
| TTCGACGGCTGATAAAACAC+TGG | 0.664694 | 5_1:-68974735 | None:intergenic |
| GAGATCGGATCAGAGAGCGT+TGG | 0.672799 | 5_1:+68974809 | Msa0746550:CDS |
| AGAGGCGTTAGTCTCTGTAA+CGG | 0.674629 | 5_1:+68974705 | Msa0746550:CDS |
| AGGATCTGTGAAGACGTGGA+AGG | 0.675912 | 5_1:+68974902 | Msa0746550:CDS |
| ATATGTCATCCAGCTCCCCA+AGG | 0.678653 | 5_1:+68974344 | Msa0746550:CDS |
| ATGACATATGTTCCGGACGG+CGG | 0.681432 | 5_1:-68974330 | None:intergenic |
| TGGATGACATATGTTCCGGA+CGG | 0.702336 | 5_1:-68974333 | None:intergenic |
| TCAGCCGTCGAATAATGTGA+CGG | 0.710824 | 5_1:+68974746 | Msa0746550:CDS |
| GGTTGACTGTGATCTAACGG+TGG | 0.726582 | 5_1:+68974935 | Msa0746550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTTTTTACTTGATTGTT+CGG | + | chr5_1:68974517-68974536 | Msa0746550:CDS | 20.0% |
| !! | AAATAGTAGATAAAGATGTT+AGG | - | chr5_1:68974593-68974612 | None:intergenic | 20.0% |
| !!! | GTATTTTTTACTTGATTGTT+CGG | + | chr5_1:68974517-68974536 | Msa0746550:CDS | 20.0% |
| !! | AAATAGTAGATAAAGATGTT+AGG | - | chr5_1:68974593-68974612 | None:intergenic | 20.0% |
| ! | TTTAACAGAAACATCAAACT+CGG | - | chr5_1:68974619-68974638 | None:intergenic | 25.0% |
| ! | GTAGTTATGAATTTGATCTT+TGG | + | chr5_1:68974997-68975016 | Msa0746550:CDS | 25.0% |
| ! | TTTAACAGAAACATCAAACT+CGG | - | chr5_1:68974619-68974638 | None:intergenic | 25.0% |
| ! | GTAGTTATGAATTTGATCTT+TGG | + | chr5_1:68974997-68975016 | Msa0746550:CDS | 25.0% |
| TTAACAGAAACATCAAACTC+GGG | - | chr5_1:68974618-68974637 | None:intergenic | 30.0% | |
| GTTTCTGTTAAAGCTGATAA+CGG | + | chr5_1:68974627-68974646 | Msa0746550:CDS | 30.0% | |
| ! | GATAACGGTAACAAAAAGAT+CGG | + | chr5_1:68974642-68974661 | Msa0746550:CDS | 30.0% |
| TTAACAGAAACATCAAACTC+GGG | - | chr5_1:68974618-68974637 | None:intergenic | 30.0% | |
| GTTTCTGTTAAAGCTGATAA+CGG | + | chr5_1:68974627-68974646 | Msa0746550:CDS | 30.0% | |
| ! | GATAACGGTAACAAAAAGAT+CGG | + | chr5_1:68974642-68974661 | Msa0746550:CDS | 30.0% |
| ! | TTTTTACTTGATTGTTCGGC+CGG | + | chr5_1:68974521-68974540 | Msa0746550:CDS | 35.0% |
| !! | AGCGTTGAAATGTTTTACAG+AGG | + | chr5_1:68974687-68974706 | Msa0746550:CDS | 35.0% |
| TAAGGTTGACTGTGATCTAA+CGG | + | chr5_1:68974932-68974951 | Msa0746550:CDS | 35.0% | |
| ! | TTTTTACTTGATTGTTCGGC+CGG | + | chr5_1:68974521-68974540 | Msa0746550:CDS | 35.0% |
| !! | AGCGTTGAAATGTTTTACAG+AGG | + | chr5_1:68974687-68974706 | Msa0746550:CDS | 35.0% |
| TAAGGTTGACTGTGATCTAA+CGG | + | chr5_1:68974932-68974951 | Msa0746550:CDS | 35.0% | |
| ATTTACTCTGATCGTGCTCA+TGG | + | chr5_1:68974482-68974501 | Msa0746550:CDS | 40.0% | |
| GTAAAAAATACCAGCAGCGA+TGG | - | chr5_1:68974508-68974527 | None:intergenic | 40.0% | |
| ACACGATCGATCGTGTATTT+CGG | - | chr5_1:68974552-68974571 | None:intergenic | 40.0% | |
| TGTTAGGTTCATTCCCTTGA+CGG | - | chr5_1:68974577-68974596 | None:intergenic | 40.0% | |
| AACACCGTCACATTATTCGA+CGG | - | chr5_1:68974753-68974772 | None:intergenic | 40.0% | |
| TAATGTGACGGTGTTTCAGA+CGG | + | chr5_1:68974758-68974777 | Msa0746550:CDS | 40.0% | |
| CCTCCAACTTTAATCTTCAC+CGG | - | chr5_1:68974885-68974904 | None:intergenic | 40.0% | |
| TCTAACGGTGGATCAGTTAA+CGG | + | chr5_1:68974947-68974966 | Msa0746550:CDS | 40.0% | |
| ATTTACTCTGATCGTGCTCA+TGG | + | chr5_1:68974482-68974501 | Msa0746550:CDS | 40.0% | |
| GTAAAAAATACCAGCAGCGA+TGG | - | chr5_1:68974508-68974527 | None:intergenic | 40.0% | |
| ACACGATCGATCGTGTATTT+CGG | - | chr5_1:68974552-68974571 | None:intergenic | 40.0% | |
| TGTTAGGTTCATTCCCTTGA+CGG | - | chr5_1:68974577-68974596 | None:intergenic | 40.0% | |
| AACACCGTCACATTATTCGA+CGG | - | chr5_1:68974753-68974772 | None:intergenic | 40.0% | |
| TAATGTGACGGTGTTTCAGA+CGG | + | chr5_1:68974758-68974777 | Msa0746550:CDS | 40.0% | |
| CCTCCAACTTTAATCTTCAC+CGG | - | chr5_1:68974885-68974904 | None:intergenic | 40.0% | |
| TCTAACGGTGGATCAGTTAA+CGG | + | chr5_1:68974947-68974966 | Msa0746550:CDS | 40.0% | |
| TGGATGACATATGTTCCGGA+CGG | - | chr5_1:68974336-68974355 | None:intergenic | 45.0% | |
| GAGCTGGATGACATATGTTC+CGG | - | chr5_1:68974340-68974359 | None:intergenic | 45.0% | |
| ATGCGGTAGGTTTGATCCTT+GGG | - | chr5_1:68974363-68974382 | None:intergenic | 45.0% | |
| TAACGTTGTGCATTCTCTGG+TGG | - | chr5_1:68974390-68974409 | None:intergenic | 45.0% | |
| !! | TGCTGTCTTTGCTGGTTCAT+CGG | + | chr5_1:68974453-68974472 | Msa0746550:CDS | 45.0% |
| !! | ATCGTGTATTTCGGTGCTTC+CGG | - | chr5_1:68974543-68974562 | None:intergenic | 45.0% |
| !! | AGAGGCGTTAGTCTCTGTAA+CGG | + | chr5_1:68974705-68974724 | Msa0746550:CDS | 45.0% |
| TTCGACGGCTGATAAAACAC+TGG | - | chr5_1:68974738-68974757 | None:intergenic | 45.0% | |
| TCAGCCGTCGAATAATGTGA+CGG | + | chr5_1:68974746-68974765 | Msa0746550:CDS | 45.0% | |
| ! | GTGTTTCAGACGGTGTTGAA+AGG | + | chr5_1:68974768-68974787 | Msa0746550:CDS | 45.0% |
| ! | CAGACGGTGTTGAAAGGTAA+CGG | + | chr5_1:68974774-68974793 | Msa0746550:CDS | 45.0% |
| GCTCTCAGCTTCAACGTTAA+CGG | - | chr5_1:68974861-68974880 | None:intergenic | 45.0% | |
| ! | GCACCGGTGAAGATTAAAGT+TGG | + | chr5_1:68974879-68974898 | Msa0746550:CDS | 45.0% |
| CCGGTGAAGATTAAAGTTGG+AGG | + | chr5_1:68974882-68974901 | Msa0746550:CDS | 45.0% | |
| GACGTGGAAGGTTAGAGTTA+AGG | + | chr5_1:68974914-68974933 | Msa0746550:CDS | 45.0% | |
| TGGATGACATATGTTCCGGA+CGG | - | chr5_1:68974336-68974355 | None:intergenic | 45.0% | |
| GAGCTGGATGACATATGTTC+CGG | - | chr5_1:68974340-68974359 | None:intergenic | 45.0% | |
| ATGCGGTAGGTTTGATCCTT+GGG | - | chr5_1:68974363-68974382 | None:intergenic | 45.0% | |
| TAACGTTGTGCATTCTCTGG+TGG | - | chr5_1:68974390-68974409 | None:intergenic | 45.0% | |
| !! | TGCTGTCTTTGCTGGTTCAT+CGG | + | chr5_1:68974453-68974472 | Msa0746550:CDS | 45.0% |
| !! | ATCGTGTATTTCGGTGCTTC+CGG | - | chr5_1:68974543-68974562 | None:intergenic | 45.0% |
| !! | AGAGGCGTTAGTCTCTGTAA+CGG | + | chr5_1:68974705-68974724 | Msa0746550:CDS | 45.0% |
| TTCGACGGCTGATAAAACAC+TGG | - | chr5_1:68974738-68974757 | None:intergenic | 45.0% | |
| TCAGCCGTCGAATAATGTGA+CGG | + | chr5_1:68974746-68974765 | Msa0746550:CDS | 45.0% | |
| ! | GTGTTTCAGACGGTGTTGAA+AGG | + | chr5_1:68974768-68974787 | Msa0746550:CDS | 45.0% |
| ! | CAGACGGTGTTGAAAGGTAA+CGG | + | chr5_1:68974774-68974793 | Msa0746550:CDS | 45.0% |
| GCTCTCAGCTTCAACGTTAA+CGG | - | chr5_1:68974861-68974880 | None:intergenic | 45.0% | |
| ! | GCACCGGTGAAGATTAAAGT+TGG | + | chr5_1:68974879-68974898 | Msa0746550:CDS | 45.0% |
| CCGGTGAAGATTAAAGTTGG+AGG | + | chr5_1:68974882-68974901 | Msa0746550:CDS | 45.0% | |
| GACGTGGAAGGTTAGAGTTA+AGG | + | chr5_1:68974914-68974933 | Msa0746550:CDS | 45.0% | |
| ATGACATATGTTCCGGACGG+CGG | - | chr5_1:68974333-68974352 | None:intergenic | 50.0% | |
| ATATGTCATCCAGCTCCCCA+AGG | + | chr5_1:68974344-68974363 | Msa0746550:CDS | 50.0% | |
| TGCGGTAGGTTTGATCCTTG+GGG | - | chr5_1:68974362-68974381 | None:intergenic | 50.0% | |
| GATGCGGTAGGTTTGATCCT+TGG | - | chr5_1:68974364-68974383 | None:intergenic | 50.0% | |
| GTTGTGCATTCTCTGGTGGT+GGG | - | chr5_1:68974386-68974405 | None:intergenic | 50.0% | |
| GCGTAACGTTGTGCATTCTC+TGG | - | chr5_1:68974393-68974412 | None:intergenic | 50.0% | |
| ! | ACTTTTGCGGCGAGTGTAGT+TGG | - | chr5_1:68974415-68974434 | None:intergenic | 50.0% |
| GATGCTGTTGCTGTCTTTGC+TGG | + | chr5_1:68974445-68974464 | Msa0746550:CDS | 50.0% | |
| ATCGATCGTGTCTCCGTCAA+GGG | + | chr5_1:68974561-68974580 | Msa0746550:CDS | 50.0% | |
| ! | CGGTATCGAACTTGCGAGAT+CGG | + | chr5_1:68974794-68974813 | Msa0746550:CDS | 50.0% |
| !! | TCAGAGAGCGTTGGTGAATG+CGG | + | chr5_1:68974818-68974837 | Msa0746550:CDS | 50.0% |
| !! | AGCGTTGGTGAATGCGGTTA+CGG | + | chr5_1:68974824-68974843 | Msa0746550:CDS | 50.0% |
| ! | AACGTTGAAGCTGAGAGCAC+CGG | + | chr5_1:68974863-68974882 | Msa0746550:CDS | 50.0% |
| TTGGAGGATCTGTGAAGACG+TGG | + | chr5_1:68974898-68974917 | Msa0746550:CDS | 50.0% | |
| AGGATCTGTGAAGACGTGGA+AGG | + | chr5_1:68974902-68974921 | Msa0746550:CDS | 50.0% | |
| GGTTGACTGTGATCTAACGG+TGG | + | chr5_1:68974935-68974954 | Msa0746550:CDS | 50.0% | |
| GCAGGCGAAGATTGTTGACA+AGG | + | chr5_1:68974971-68974990 | Msa0746550:CDS | 50.0% | |
| ATGACATATGTTCCGGACGG+CGG | - | chr5_1:68974333-68974352 | None:intergenic | 50.0% | |
| ATATGTCATCCAGCTCCCCA+AGG | + | chr5_1:68974344-68974363 | Msa0746550:CDS | 50.0% | |
| TGCGGTAGGTTTGATCCTTG+GGG | - | chr5_1:68974362-68974381 | None:intergenic | 50.0% | |
| GATGCGGTAGGTTTGATCCT+TGG | - | chr5_1:68974364-68974383 | None:intergenic | 50.0% | |
| GTTGTGCATTCTCTGGTGGT+GGG | - | chr5_1:68974386-68974405 | None:intergenic | 50.0% | |
| GCGTAACGTTGTGCATTCTC+TGG | - | chr5_1:68974393-68974412 | None:intergenic | 50.0% | |
| ! | ACTTTTGCGGCGAGTGTAGT+TGG | - | chr5_1:68974415-68974434 | None:intergenic | 50.0% |
| GATGCTGTTGCTGTCTTTGC+TGG | + | chr5_1:68974445-68974464 | Msa0746550:CDS | 50.0% | |
| ATCGATCGTGTCTCCGTCAA+GGG | + | chr5_1:68974561-68974580 | Msa0746550:CDS | 50.0% | |
| ! | CGGTATCGAACTTGCGAGAT+CGG | + | chr5_1:68974794-68974813 | Msa0746550:CDS | 50.0% |
| !! | TCAGAGAGCGTTGGTGAATG+CGG | + | chr5_1:68974818-68974837 | Msa0746550:CDS | 50.0% |
| !! | AGCGTTGGTGAATGCGGTTA+CGG | + | chr5_1:68974824-68974843 | Msa0746550:CDS | 50.0% |
| ! | AACGTTGAAGCTGAGAGCAC+CGG | + | chr5_1:68974863-68974882 | Msa0746550:CDS | 50.0% |
| TTGGAGGATCTGTGAAGACG+TGG | + | chr5_1:68974898-68974917 | Msa0746550:CDS | 50.0% | |
| AGGATCTGTGAAGACGTGGA+AGG | + | chr5_1:68974902-68974921 | Msa0746550:CDS | 50.0% | |
| GGTTGACTGTGATCTAACGG+TGG | + | chr5_1:68974935-68974954 | Msa0746550:CDS | 50.0% | |
| GCAGGCGAAGATTGTTGACA+AGG | + | chr5_1:68974971-68974990 | Msa0746550:CDS | 50.0% | |
| !! | TGGAAGGTGGAGAGGCGTTA+GGG | - | chr5_1:68974296-68974315 | None:intergenic | 55.0% |
| !! | TTGGAAGGTGGAGAGGCGTT+AGG | - | chr5_1:68974297-68974316 | None:intergenic | 55.0% |
| AGGTTTGATCCTTGGGGAGC+TGG | - | chr5_1:68974356-68974375 | None:intergenic | 55.0% | |
| !! | CATTCTCTGGTGGTGGGATG+CGG | - | chr5_1:68974380-68974399 | None:intergenic | 55.0% |
| CGTTGTGCATTCTCTGGTGG+TGG | - | chr5_1:68974387-68974406 | None:intergenic | 55.0% | |
| GATCGATCGTGTCTCCGTCA+AGG | + | chr5_1:68974560-68974579 | Msa0746550:CDS | 55.0% | |
| ! | GAGATCGGATCAGAGAGCGT+TGG | + | chr5_1:68974809-68974828 | Msa0746550:CDS | 55.0% |
| !! | TGGAAGGTGGAGAGGCGTTA+GGG | - | chr5_1:68974296-68974315 | None:intergenic | 55.0% |
| !! | TTGGAAGGTGGAGAGGCGTT+AGG | - | chr5_1:68974297-68974316 | None:intergenic | 55.0% |
| AGGTTTGATCCTTGGGGAGC+TGG | - | chr5_1:68974356-68974375 | None:intergenic | 55.0% | |
| !! | CATTCTCTGGTGGTGGGATG+CGG | - | chr5_1:68974380-68974399 | None:intergenic | 55.0% |
| CGTTGTGCATTCTCTGGTGG+TGG | - | chr5_1:68974387-68974406 | None:intergenic | 55.0% | |
| GATCGATCGTGTCTCCGTCA+AGG | + | chr5_1:68974560-68974579 | Msa0746550:CDS | 55.0% | |
| ! | GAGATCGGATCAGAGAGCGT+TGG | + | chr5_1:68974809-68974828 | Msa0746550:CDS | 55.0% |
| ! | AGCGGTGTTGGAAGGTGGAG+AGG | - | chr5_1:68974304-68974323 | None:intergenic | 60.0% |
| ! | GATGGAGCGGTGTTGGAAGG+TGG | - | chr5_1:68974309-68974328 | None:intergenic | 60.0% |
| ACACTCGCCGCAAAAGTCGC+CGG | + | chr5_1:68974418-68974437 | Msa0746550:CDS | 60.0% | |
| !! | ATCCGCACCGGCGACTTTTG+CGG | - | chr5_1:68974428-68974447 | None:intergenic | 60.0% |
| GACAGCAACAGCATCCGCAC+CGG | - | chr5_1:68974440-68974459 | None:intergenic | 60.0% | |
| GGTGGATCAGTTAACGGCGC+AGG | + | chr5_1:68974953-68974972 | Msa0746550:CDS | 60.0% | |
| ! | AGCGGTGTTGGAAGGTGGAG+AGG | - | chr5_1:68974304-68974323 | None:intergenic | 60.0% |
| ! | GATGGAGCGGTGTTGGAAGG+TGG | - | chr5_1:68974309-68974328 | None:intergenic | 60.0% |
| ACACTCGCCGCAAAAGTCGC+CGG | + | chr5_1:68974418-68974437 | Msa0746550:CDS | 60.0% | |
| !! | ATCCGCACCGGCGACTTTTG+CGG | - | chr5_1:68974428-68974447 | None:intergenic | 60.0% |
| GACAGCAACAGCATCCGCAC+CGG | - | chr5_1:68974440-68974459 | None:intergenic | 60.0% | |
| GGTGGATCAGTTAACGGCGC+AGG | + | chr5_1:68974953-68974972 | Msa0746550:CDS | 60.0% | |
| ! | GGCGATGGAGCGGTGTTGGA+AGG | - | chr5_1:68974312-68974331 | None:intergenic | 65.0% |
| TATGTTCCGGACGGCGGCGA+TGG | - | chr5_1:68974327-68974346 | None:intergenic | 65.0% | |
| !! | CTCTGGTGGTGGGATGCGGT+AGG | - | chr5_1:68974376-68974395 | None:intergenic | 65.0% |
| GTGCTCATGGCCATCGCTGC+TGG | + | chr5_1:68974495-68974514 | Msa0746550:CDS | 65.0% | |
| ! | GGCGATGGAGCGGTGTTGGA+AGG | - | chr5_1:68974312-68974331 | None:intergenic | 65.0% |
| TATGTTCCGGACGGCGGCGA+TGG | - | chr5_1:68974327-68974346 | None:intergenic | 65.0% | |
| !! | CTCTGGTGGTGGGATGCGGT+AGG | - | chr5_1:68974376-68974395 | None:intergenic | 65.0% |
| GTGCTCATGGCCATCGCTGC+TGG | + | chr5_1:68974495-68974514 | Msa0746550:CDS | 65.0% | |
| CGCCGCAAAAGTCGCCGGTG+CGG | + | chr5_1:68974423-68974442 | Msa0746550:CDS | 70.0% | |
| CGCCGCAAAAGTCGCCGGTG+CGG | + | chr5_1:68974423-68974442 | Msa0746550:CDS | 70.0% | |
| CGGCGGCGATGGAGCGGTGT+TGG | - | chr5_1:68974316-68974335 | None:intergenic | 75.0% | |
| ACCGCTCCATCGCCGCCGTC+CGG | + | chr5_1:68974318-68974337 | Msa0746550:CDS | 75.0% | |
| TCCGGACGGCGGCGATGGAG+CGG | - | chr5_1:68974322-68974341 | None:intergenic | 75.0% | |
| CGGCGGCGATGGAGCGGTGT+TGG | - | chr5_1:68974316-68974335 | None:intergenic | 75.0% | |
| ACCGCTCCATCGCCGCCGTC+CGG | + | chr5_1:68974318-68974337 | Msa0746550:CDS | 75.0% | |
| TCCGGACGGCGGCGATGGAG+CGG | - | chr5_1:68974322-68974341 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 68974276 | 68975025 | 68974276 | ID=Msa0746550;Name=Msa0746550 |
| chr5_1 | mRNA | 68974276 | 68975025 | 68974276 | ID=Msa0746550-mRNA-1;Parent=Msa0746550;Name=Msa0746550-mRNA-1;_AED=0.38;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|249 |
| chr5_1 | exon | 68974276 | 68975025 | 68974276 | ID=Msa0746550-mRNA-1:exon:20550;Parent=Msa0746550-mRNA-1 |
| chr5_1 | CDS | 68974276 | 68975025 | 68974276 | ID=Msa0746550-mRNA-1:cds;Parent=Msa0746550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
