Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810250 | XP_013454048.2 | 94.603 | 315 | 17 | 0 | 1 | 315 | 25 | 339 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810250 | sp|O82161|PHI1_TOBAC | 74.038 | 312 | 71 | 6 | 9 | 315 | 7 | 313 | 7.02e-162 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810250 | G7KBB9 | 94.603 | 315 | 17 | 0 | 1 | 315 | 1 | 315 | 0.0 | 618 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0731870 | Msa0810250 | 0.806269 | 8.929314e-50 | -8.615850e-47 |
| Msa0738110 | Msa0810250 | 0.804730 | 1.877487e-49 | -8.615850e-47 |
| Msa0746550 | Msa0810250 | 0.848689 | 5.223505e-60 | -8.615850e-47 |
| Msa0772920 | Msa0810250 | 0.819781 | 9.695728e-53 | -8.615850e-47 |
| Msa0772980 | Msa0810250 | 0.857010 | 2.183277e-62 | -8.615850e-47 |
| Msa0810250 | Msa0853250 | 0.822650 | 2.115068e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810250 | MtrunA17_Chr5g0426441 | 94.286 | 315 | 18 | 0 | 1 | 315 | 25 | 339 | 0.0 | 616 |
| Msa0810250 | MtrunA17_Chr5g0426441 | 93.851 | 309 | 19 | 0 | 7 | 315 | 340 | 648 | 0.0 | 602 |
| Msa0810250 | MtrunA17_Chr5g0426441 | 93.871 | 310 | 18 | 1 | 7 | 315 | 649 | 958 | 0.0 | 597 |
| Msa0810250 | MtrunA17_Chr3g0116001 | 78.912 | 294 | 49 | 3 | 22 | 315 | 24 | 304 | 1.75e-170 | 475 |
| Msa0810250 | MtrunA17_Chr3g0116011 | 78.571 | 294 | 50 | 4 | 22 | 315 | 24 | 304 | 7.75e-169 | 471 |
| Msa0810250 | MtrunA17_Chr3g0115951 | 71.795 | 312 | 83 | 4 | 8 | 315 | 7 | 317 | 9.38e-155 | 436 |
| Msa0810250 | MtrunA17_Chr4g0050321 | 60.702 | 285 | 98 | 3 | 31 | 315 | 30 | 300 | 3.64e-121 | 350 |
| Msa0810250 | MtrunA17_Chr2g0279311 | 53.312 | 317 | 132 | 6 | 1 | 315 | 2 | 304 | 5.62e-120 | 347 |
| Msa0810250 | MtrunA17_Chr4g0018171 | 35.739 | 291 | 165 | 8 | 21 | 300 | 50 | 329 | 2.56e-48 | 165 |
| Msa0810250 | MtrunA17_Chr1g0188071 | 35.739 | 291 | 166 | 8 | 21 | 300 | 49 | 329 | 4.35e-46 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810250 | AT4G08950.1 | 72.241 | 299 | 73 | 6 | 23 | 315 | 20 | 314 | 8.34e-149 | 421 |
| Msa0810250 | AT1G35140.1 | 64.331 | 314 | 106 | 2 | 1 | 314 | 1 | 308 | 1.47e-143 | 407 |
| Msa0810250 | AT5G64260.1 | 58.252 | 309 | 116 | 6 | 10 | 315 | 7 | 305 | 7.01e-122 | 352 |
| Msa0810250 | AT5G09440.1 | 58.759 | 274 | 84 | 6 | 44 | 315 | 32 | 278 | 4.24e-102 | 301 |
| Msa0810250 | AT5G51550.1 | 35.644 | 303 | 173 | 8 | 21 | 312 | 40 | 331 | 1.18e-48 | 166 |
| Msa0810250 | AT3G02970.1 | 31.438 | 299 | 169 | 7 | 46 | 313 | 37 | 330 | 2.21e-45 | 157 |
| Msa0810250 | AT2G35150.1 | 34.568 | 324 | 183 | 11 | 8 | 311 | 2 | 316 | 2.60e-44 | 154 |
| Msa0810250 | AT2G17230.1 | 33.007 | 306 | 183 | 9 | 19 | 312 | 62 | 357 | 2.18e-43 | 152 |
Find 64 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATACCAAATGATGTTTA+TGG | 0.117262 | 5_3:-38501022 | None:intergenic |
| TCAAGACCCACATCGTTATT+TGG | 0.213136 | 5_3:-38501528 | None:intergenic |
| TCTTATGGTGCACGCGTAAA+TGG | 0.225421 | 5_3:+38501387 | Msa0810250:CDS |
| GCTTCCAAAGGAGCTTCTTT+TGG | 0.273087 | 5_3:-38501627 | None:intergenic |
| GGAACCCATGGTTCTTCTTA+TGG | 0.283880 | 5_3:+38501372 | Msa0810250:CDS |
| CTTGACGAGAATTACTCTTT+AGG | 0.286620 | 5_3:+38501228 | Msa0810250:CDS |
| GCACTTTGTGGACCATAAAT+TGG | 0.307975 | 5_3:-38501492 | None:intergenic |
| GAAACAAGTTTGCGTACATT+TGG | 0.315193 | 5_3:+38501415 | Msa0810250:CDS |
| AAATTTCCATAAACATCATT+TGG | 0.356473 | 5_3:+38501016 | Msa0810250:CDS |
| CCATAAATTGGTTGGTGAAA+AGG | 0.364618 | 5_3:-38501480 | None:intergenic |
| AGCTCCTTTGGAAGCAGCTT+CGG | 0.364736 | 5_3:+38501635 | Msa0810250:CDS |
| TTGACGCGAGTTTAACGATT+TGG | 0.366058 | 5_3:-38501269 | None:intergenic |
| AGGACCAAAAGAAGCTCCTT+TGG | 0.376105 | 5_3:+38501623 | Msa0810250:CDS |
| CGGTTAAAAGAGGGCCTTTG+TGG | 0.388607 | 5_3:-38500990 | None:intergenic |
| AATAACGATGTGGGTCTTGA+TGG | 0.390121 | 5_3:+38501531 | Msa0810250:CDS |
| AAACAAGTTTGCGTACATTT+GGG | 0.392745 | 5_3:+38501416 | Msa0810250:CDS |
| TATAACGCAAATGGTGATAA+TGG | 0.393265 | 5_3:+38501738 | Msa0810250:CDS |
| GCAGCTGATGTGTTAGTTGA+TGG | 0.407698 | 5_3:+38501330 | Msa0810250:CDS |
| ATCGTTAAACTCGCGTCAAA+AGG | 0.419827 | 5_3:+38501273 | Msa0810250:CDS |
| GATGGTTGTGATGTGGTTGT+TGG | 0.425520 | 5_3:-38501111 | None:intergenic |
| TCCATAAACATCATTTGGTA+TGG | 0.425825 | 5_3:+38501021 | Msa0810250:CDS |
| GGAGCTTATCCTGGTTATGC+TGG | 0.426719 | 5_3:+38501681 | Msa0810250:CDS |
| CTAACACATCAGCTGCTGTT+AGG | 0.449185 | 5_3:-38501323 | None:intergenic |
| GGAACCGTAACCAATCCTTT+TGG | 0.451430 | 5_3:+38501585 | Msa0810250:CDS |
| TGAAAATATCCATTACCAAA+AGG | 0.461381 | 5_3:-38501600 | None:intergenic |
| TGCTGTTAGGACAACGTTGA+TGG | 0.463697 | 5_3:-38501310 | None:intergenic |
| GCAACCAATGGTGCACTTTG+TGG | 0.466845 | 5_3:-38501504 | None:intergenic |
| TGTACCGGTGTTTATGCTAA+AGG | 0.481549 | 5_3:+38501660 | Msa0810250:CDS |
| ATATCCATTACCAAAAGGAT+TGG | 0.488324 | 5_3:-38501595 | None:intergenic |
| TATGCTAAAGGAGCTTATCC+TGG | 0.497752 | 5_3:+38501672 | Msa0810250:CDS |
| GTTATGATTGCTCTTTGAGA+TGG | 0.502947 | 5_3:-38501054 | None:intergenic |
| ATTACCAAAAGGATTGGTTA+CGG | 0.504727 | 5_3:-38501589 | None:intergenic |
| GAGTACCTAGCGAGAGAGCT+AGG | 0.504789 | 5_3:-38501200 | None:intergenic |
| GAAGCAGCTTCGGCTTGTAC+CGG | 0.506300 | 5_3:+38501645 | Msa0810250:CDS |
| TGGTCCACAAAGTGCACCAT+TGG | 0.507521 | 5_3:+38501500 | Msa0810250:CDS |
| TCGTTATTTGGTGCAACCAA+TGG | 0.521248 | 5_3:-38501516 | None:intergenic |
| GAGCTTATCCTGGTTATGCT+GGG | 0.526776 | 5_3:+38501682 | Msa0810250:CDS |
| AAGTTTGCGTACATTTGGGT+TGG | 0.527568 | 5_3:+38501420 | Msa0810250:CDS |
| GGTGCTAGCTATAACGCAAA+TGG | 0.528973 | 5_3:+38501729 | Msa0810250:CDS |
| TTATGCTGGGGACCTTCTAG+TGG | 0.532370 | 5_3:+38501695 | Msa0810250:CDS |
| CGATGTGGGTCTTGATGGAA+TGG | 0.552866 | 5_3:+38501536 | Msa0810250:CDS |
| ACGCAAATGGTGATAATGGA+AGG | 0.560708 | 5_3:+38501742 | Msa0810250:CDS |
| TCAAGTAGGTGTGGAACCCA+TGG | 0.564282 | 5_3:+38501360 | Msa0810250:CDS |
| GTTAACCTAGCTCTCTCGCT+AGG | 0.568037 | 5_3:+38501195 | Msa0810250:CDS |
| AGAAGGTCCCCAGCATAACC+AGG | 0.571861 | 5_3:-38501690 | None:intergenic |
| AACCTCAGTTTGTTCTACGT+TGG | 0.574270 | 5_3:+38501797 | Msa0810250:CDS |
| TTCCACCACGTGGCAACTGA+TGG | 0.582258 | 5_3:-38501129 | None:intergenic |
| AATTCAGAGACACAATGTGC+TGG | 0.594460 | 5_3:+38501444 | Msa0810250:CDS |
| AACCATCAGTTGCCACGTGG+TGG | 0.610757 | 5_3:+38501127 | Msa0810250:CDS |
| TTTGTGGACCATAAATTGGT+TGG | 0.611426 | 5_3:-38501488 | None:intergenic |
| CTTAAATTTCAATACCACAA+AGG | 0.623830 | 5_3:+38500976 | Msa0810250:CDS |
| GTGCACCATAAGAAGAACCA+TGG | 0.625761 | 5_3:-38501377 | None:intergenic |
| GGTTGCACCAAATAACGATG+TGG | 0.628110 | 5_3:+38501521 | Msa0810250:CDS |
| AGCTTATCCTGGTTATGCTG+GGG | 0.628401 | 5_3:+38501683 | Msa0810250:CDS |
| CAAGCCGAAGCTGCTTCCAA+AGG | 0.628489 | 5_3:-38501639 | None:intergenic |
| TACCAACGTAGAACAAACTG+AGG | 0.649916 | 5_3:-38501799 | None:intergenic |
| TTCGGTTGATTTCCACCACG+TGG | 0.652662 | 5_3:-38501139 | None:intergenic |
| TGCACCATAAGAAGAACCAT+GGG | 0.655555 | 5_3:-38501376 | None:intergenic |
| GTTGCACCAAATAACGATGT+GGG | 0.661869 | 5_3:+38501522 | Msa0810250:CDS |
| CTTCTAGTGGACAAAACAAG+TGG | 0.666644 | 5_3:+38501708 | Msa0810250:CDS |
| GGCAACTGATGGTTGTGATG+TGG | 0.667076 | 5_3:-38501118 | None:intergenic |
| AGCTCCTTTAGCATAAACAC+CGG | 0.684494 | 5_3:-38501664 | None:intergenic |
| CACAACCATCAGTTGCCACG+TGG | 0.702852 | 5_3:+38501124 | Msa0810250:CDS |
| AATGTGCTGGTCAATGCGCG+TGG | 0.715277 | 5_3:+38501457 | Msa0810250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCCATAAACATCATT+TGG | + | chr5_3:38501016-38501035 | Msa0810250:CDS | 20.0% |
| !! | AAATTTCCATAAACATCATT+TGG | + | chr5_3:38501016-38501035 | Msa0810250:CDS | 20.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_3:38500976-38500995 | Msa0810250:CDS | 25.0% |
| !!! | AAATTTTACCGGTTAAAAGA+GGG | - | chr5_3:38501002-38501021 | None:intergenic | 25.0% |
| !! | GATGTTTATGGAAATTTTAC+CGG | - | chr5_3:38501013-38501032 | None:intergenic | 25.0% |
| !!! | AGTGAGTTGATAGTATTTTT+CGG | - | chr5_3:38501160-38501179 | None:intergenic | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | - | chr5_3:38501603-38501622 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | + | chr5_3:38501603-38501622 | Msa0810250:CDS | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | chr5_3:38500976-38500995 | Msa0810250:CDS | 25.0% |
| !!! | AAATTTTACCGGTTAAAAGA+GGG | - | chr5_3:38501002-38501021 | None:intergenic | 25.0% |
| !! | GATGTTTATGGAAATTTTAC+CGG | - | chr5_3:38501013-38501032 | None:intergenic | 25.0% |
| !!! | AGTGAGTTGATAGTATTTTT+CGG | - | chr5_3:38501160-38501179 | None:intergenic | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | - | chr5_3:38501603-38501622 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | + | chr5_3:38501603-38501622 | Msa0810250:CDS | 25.0% |
| !! | GAAATTTTACCGGTTAAAAG+AGG | - | chr5_3:38501003-38501022 | None:intergenic | 30.0% |
| TCCATAAACATCATTTGGTA+TGG | + | chr5_3:38501021-38501040 | Msa0810250:CDS | 30.0% | |
| TCCATACCAAATGATGTTTA+TGG | - | chr5_3:38501025-38501044 | None:intergenic | 30.0% | |
| !!! | TTGATGGATTTTGTTCAAGT+AGG | + | chr5_3:38501346-38501365 | Msa0810250:CDS | 30.0% |
| AAACAAGTTTGCGTACATTT+GGG | + | chr5_3:38501416-38501435 | Msa0810250:CDS | 30.0% | |
| !! | ATTACCAAAAGGATTGGTTA+CGG | - | chr5_3:38501592-38501611 | None:intergenic | 30.0% |
| ATATCCATTACCAAAAGGAT+TGG | - | chr5_3:38501598-38501617 | None:intergenic | 30.0% | |
| TATAACGCAAATGGTGATAA+TGG | + | chr5_3:38501738-38501757 | Msa0810250:CDS | 30.0% | |
| !! | GAAATTTTACCGGTTAAAAG+AGG | - | chr5_3:38501003-38501022 | None:intergenic | 30.0% |
| TCCATAAACATCATTTGGTA+TGG | + | chr5_3:38501021-38501040 | Msa0810250:CDS | 30.0% | |
| TCCATACCAAATGATGTTTA+TGG | - | chr5_3:38501025-38501044 | None:intergenic | 30.0% | |
| !!! | TTGATGGATTTTGTTCAAGT+AGG | + | chr5_3:38501346-38501365 | Msa0810250:CDS | 30.0% |
| AAACAAGTTTGCGTACATTT+GGG | + | chr5_3:38501416-38501435 | Msa0810250:CDS | 30.0% | |
| !! | ATTACCAAAAGGATTGGTTA+CGG | - | chr5_3:38501592-38501611 | None:intergenic | 30.0% |
| ATATCCATTACCAAAAGGAT+TGG | - | chr5_3:38501598-38501617 | None:intergenic | 30.0% | |
| TATAACGCAAATGGTGATAA+TGG | + | chr5_3:38501738-38501757 | Msa0810250:CDS | 30.0% | |
| ! | GTTATGATTGCTCTTTGAGA+TGG | - | chr5_3:38501057-38501076 | None:intergenic | 35.0% |
| !!! | TTTTTTGGGAGAAGAAAGTG+AGG | - | chr5_3:38501091-38501110 | None:intergenic | 35.0% |
| !!! | GATGTGGTTGTTGGTTTTTT+GGG | - | chr5_3:38501105-38501124 | None:intergenic | 35.0% |
| !!! | TGATGTGGTTGTTGGTTTTT+TGG | - | chr5_3:38501106-38501125 | None:intergenic | 35.0% |
| CTTGACGAGAATTACTCTTT+AGG | + | chr5_3:38501228-38501247 | Msa0810250:CDS | 35.0% | |
| GAAACAAGTTTGCGTACATT+TGG | + | chr5_3:38501415-38501434 | Msa0810250:CDS | 35.0% | |
| !! | CCATAAATTGGTTGGTGAAA+AGG | - | chr5_3:38501483-38501502 | None:intergenic | 35.0% |
| ! | CCTTTTCACCAACCAATTTA+TGG | + | chr5_3:38501480-38501499 | Msa0810250:CDS | 35.0% |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_3:38501491-38501510 | None:intergenic | 35.0% | |
| ! | GTAACCAATCCTTTTGGTAA+TGG | + | chr5_3:38501591-38501610 | Msa0810250:CDS | 35.0% |
| ! | GTAGAACAAACTGAGGTTTT+AGG | - | chr5_3:38501795-38501814 | None:intergenic | 35.0% |
| ! | GTTATGATTGCTCTTTGAGA+TGG | - | chr5_3:38501057-38501076 | None:intergenic | 35.0% |
| !!! | TTTTTTGGGAGAAGAAAGTG+AGG | - | chr5_3:38501091-38501110 | None:intergenic | 35.0% |
| !!! | GATGTGGTTGTTGGTTTTTT+GGG | - | chr5_3:38501105-38501124 | None:intergenic | 35.0% |
| !!! | TGATGTGGTTGTTGGTTTTT+TGG | - | chr5_3:38501106-38501125 | None:intergenic | 35.0% |
| CTTGACGAGAATTACTCTTT+AGG | + | chr5_3:38501228-38501247 | Msa0810250:CDS | 35.0% | |
| GAAACAAGTTTGCGTACATT+TGG | + | chr5_3:38501415-38501434 | Msa0810250:CDS | 35.0% | |
| !! | CCATAAATTGGTTGGTGAAA+AGG | - | chr5_3:38501483-38501502 | None:intergenic | 35.0% |
| ! | CCTTTTCACCAACCAATTTA+TGG | + | chr5_3:38501480-38501499 | Msa0810250:CDS | 35.0% |
| TTTGTGGACCATAAATTGGT+TGG | - | chr5_3:38501491-38501510 | None:intergenic | 35.0% | |
| ! | GTAACCAATCCTTTTGGTAA+TGG | + | chr5_3:38501591-38501610 | Msa0810250:CDS | 35.0% |
| ! | GTAGAACAAACTGAGGTTTT+AGG | - | chr5_3:38501795-38501814 | None:intergenic | 35.0% |
| TTGACGCGAGTTTAACGATT+TGG | - | chr5_3:38501272-38501291 | None:intergenic | 40.0% | |
| ATCGTTAAACTCGCGTCAAA+AGG | + | chr5_3:38501273-38501292 | Msa0810250:CDS | 40.0% | |
| ! | GGATTTTGTTCAAGTAGGTG+TGG | + | chr5_3:38501351-38501370 | Msa0810250:CDS | 40.0% |
| TGCACCATAAGAAGAACCAT+GGG | - | chr5_3:38501379-38501398 | None:intergenic | 40.0% | |
| AAGTTTGCGTACATTTGGGT+TGG | + | chr5_3:38501420-38501439 | Msa0810250:CDS | 40.0% | |
| AATTCAGAGACACAATGTGC+TGG | + | chr5_3:38501444-38501463 | Msa0810250:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_3:38501495-38501514 | None:intergenic | 40.0% | |
| !! | TCGTTATTTGGTGCAACCAA+TGG | - | chr5_3:38501519-38501538 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+GGG | + | chr5_3:38501522-38501541 | Msa0810250:CDS | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | - | chr5_3:38501531-38501550 | None:intergenic | 40.0% | |
| AATAACGATGTGGGTCTTGA+TGG | + | chr5_3:38501531-38501550 | Msa0810250:CDS | 40.0% | |
| !!! | AATGTCGCTAGTCTTTTAGC+TGG | + | chr5_3:38501564-38501583 | Msa0810250:CDS | 40.0% |
| ! | TGTACCGGTGTTTATGCTAA+AGG | + | chr5_3:38501660-38501679 | Msa0810250:CDS | 40.0% |
| AGCTCCTTTAGCATAAACAC+CGG | - | chr5_3:38501667-38501686 | None:intergenic | 40.0% | |
| TATGCTAAAGGAGCTTATCC+TGG | + | chr5_3:38501672-38501691 | Msa0810250:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACTAGA+AGG | - | chr5_3:38501710-38501729 | None:intergenic | 40.0% |
| ! | CTTCTAGTGGACAAAACAAG+TGG | + | chr5_3:38501708-38501727 | Msa0810250:CDS | 40.0% |
| !! | ACGCAAATGGTGATAATGGA+AGG | + | chr5_3:38501742-38501761 | Msa0810250:CDS | 40.0% |
| ! | AACCTCAGTTTGTTCTACGT+TGG | + | chr5_3:38501797-38501816 | Msa0810250:CDS | 40.0% |
| TACCAACGTAGAACAAACTG+AGG | - | chr5_3:38501802-38501821 | None:intergenic | 40.0% | |
| TTGACGCGAGTTTAACGATT+TGG | - | chr5_3:38501272-38501291 | None:intergenic | 40.0% | |
| ATCGTTAAACTCGCGTCAAA+AGG | + | chr5_3:38501273-38501292 | Msa0810250:CDS | 40.0% | |
| ! | GGATTTTGTTCAAGTAGGTG+TGG | + | chr5_3:38501351-38501370 | Msa0810250:CDS | 40.0% |
| TGCACCATAAGAAGAACCAT+GGG | - | chr5_3:38501379-38501398 | None:intergenic | 40.0% | |
| AAGTTTGCGTACATTTGGGT+TGG | + | chr5_3:38501420-38501439 | Msa0810250:CDS | 40.0% | |
| AATTCAGAGACACAATGTGC+TGG | + | chr5_3:38501444-38501463 | Msa0810250:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | chr5_3:38501495-38501514 | None:intergenic | 40.0% | |
| !! | TCGTTATTTGGTGCAACCAA+TGG | - | chr5_3:38501519-38501538 | None:intergenic | 40.0% |
| GTTGCACCAAATAACGATGT+GGG | + | chr5_3:38501522-38501541 | Msa0810250:CDS | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | - | chr5_3:38501531-38501550 | None:intergenic | 40.0% | |
| AATAACGATGTGGGTCTTGA+TGG | + | chr5_3:38501531-38501550 | Msa0810250:CDS | 40.0% | |
| !!! | AATGTCGCTAGTCTTTTAGC+TGG | + | chr5_3:38501564-38501583 | Msa0810250:CDS | 40.0% |
| ! | TGTACCGGTGTTTATGCTAA+AGG | + | chr5_3:38501660-38501679 | Msa0810250:CDS | 40.0% |
| AGCTCCTTTAGCATAAACAC+CGG | - | chr5_3:38501667-38501686 | None:intergenic | 40.0% | |
| TATGCTAAAGGAGCTTATCC+TGG | + | chr5_3:38501672-38501691 | Msa0810250:CDS | 40.0% | |
| !!! | CACTTGTTTTGTCCACTAGA+AGG | - | chr5_3:38501710-38501729 | None:intergenic | 40.0% |
| ! | CTTCTAGTGGACAAAACAAG+TGG | + | chr5_3:38501708-38501727 | Msa0810250:CDS | 40.0% |
| !! | ACGCAAATGGTGATAATGGA+AGG | + | chr5_3:38501742-38501761 | Msa0810250:CDS | 40.0% |
| ! | AACCTCAGTTTGTTCTACGT+TGG | + | chr5_3:38501797-38501816 | Msa0810250:CDS | 40.0% |
| TACCAACGTAGAACAAACTG+AGG | - | chr5_3:38501802-38501821 | None:intergenic | 40.0% | |
| ! | CACAAAGGCCCTCTTTTAAC+CGG | + | chr5_3:38500991-38501010 | Msa0810250:CDS | 45.0% |
| GATGGTTGTGATGTGGTTGT+TGG | - | chr5_3:38501114-38501133 | None:intergenic | 45.0% | |
| TGCTGTTAGGACAACGTTGA+TGG | - | chr5_3:38501313-38501332 | None:intergenic | 45.0% | |
| CTAACACATCAGCTGCTGTT+AGG | - | chr5_3:38501326-38501345 | None:intergenic | 45.0% | |
| GCAGCTGATGTGTTAGTTGA+TGG | + | chr5_3:38501330-38501349 | Msa0810250:CDS | 45.0% | |
| GGAACCCATGGTTCTTCTTA+TGG | + | chr5_3:38501372-38501391 | Msa0810250:CDS | 45.0% | |
| GTGCACCATAAGAAGAACCA+TGG | - | chr5_3:38501380-38501399 | None:intergenic | 45.0% | |
| TCTTATGGTGCACGCGTAAA+TGG | + | chr5_3:38501387-38501406 | Msa0810250:CDS | 45.0% | |
| GGTTGCACCAAATAACGATG+TGG | + | chr5_3:38501521-38501540 | Msa0810250:CDS | 45.0% | |
| ! | GGAACCGTAACCAATCCTTT+TGG | + | chr5_3:38501585-38501604 | Msa0810250:CDS | 45.0% |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_3:38501623-38501642 | Msa0810250:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_3:38501630-38501649 | None:intergenic | 45.0% |
| GAGCTTATCCTGGTTATGCT+GGG | + | chr5_3:38501682-38501701 | Msa0810250:CDS | 45.0% | |
| AGCTTATCCTGGTTATGCTG+GGG | + | chr5_3:38501683-38501702 | Msa0810250:CDS | 45.0% | |
| GGTGCTAGCTATAACGCAAA+TGG | + | chr5_3:38501729-38501748 | Msa0810250:CDS | 45.0% | |
| !!! | GTTTTAGGATCAGCAATCGC+AGG | - | chr5_3:38501780-38501799 | None:intergenic | 45.0% |
| ! | CACAAAGGCCCTCTTTTAAC+CGG | + | chr5_3:38500991-38501010 | Msa0810250:CDS | 45.0% |
| GATGGTTGTGATGTGGTTGT+TGG | - | chr5_3:38501114-38501133 | None:intergenic | 45.0% | |
| TGCTGTTAGGACAACGTTGA+TGG | - | chr5_3:38501313-38501332 | None:intergenic | 45.0% | |
| CTAACACATCAGCTGCTGTT+AGG | - | chr5_3:38501326-38501345 | None:intergenic | 45.0% | |
| GCAGCTGATGTGTTAGTTGA+TGG | + | chr5_3:38501330-38501349 | Msa0810250:CDS | 45.0% | |
| GGAACCCATGGTTCTTCTTA+TGG | + | chr5_3:38501372-38501391 | Msa0810250:CDS | 45.0% | |
| GTGCACCATAAGAAGAACCA+TGG | - | chr5_3:38501380-38501399 | None:intergenic | 45.0% | |
| TCTTATGGTGCACGCGTAAA+TGG | + | chr5_3:38501387-38501406 | Msa0810250:CDS | 45.0% | |
| GGTTGCACCAAATAACGATG+TGG | + | chr5_3:38501521-38501540 | Msa0810250:CDS | 45.0% | |
| ! | GGAACCGTAACCAATCCTTT+TGG | + | chr5_3:38501585-38501604 | Msa0810250:CDS | 45.0% |
| AGGACCAAAAGAAGCTCCTT+TGG | + | chr5_3:38501623-38501642 | Msa0810250:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | chr5_3:38501630-38501649 | None:intergenic | 45.0% |
| GAGCTTATCCTGGTTATGCT+GGG | + | chr5_3:38501682-38501701 | Msa0810250:CDS | 45.0% | |
| AGCTTATCCTGGTTATGCTG+GGG | + | chr5_3:38501683-38501702 | Msa0810250:CDS | 45.0% | |
| GGTGCTAGCTATAACGCAAA+TGG | + | chr5_3:38501729-38501748 | Msa0810250:CDS | 45.0% | |
| !!! | GTTTTAGGATCAGCAATCGC+AGG | - | chr5_3:38501780-38501799 | None:intergenic | 45.0% |
| CGGTTAAAAGAGGGCCTTTG+TGG | - | chr5_3:38500993-38501012 | None:intergenic | 50.0% | |
| GGCAACTGATGGTTGTGATG+TGG | - | chr5_3:38501121-38501140 | None:intergenic | 50.0% | |
| ! | TTCGGTTGATTTCCACCACG+TGG | - | chr5_3:38501142-38501161 | None:intergenic | 50.0% |
| ! | GTTAACCTAGCTCTCTCGCT+AGG | + | chr5_3:38501195-38501214 | Msa0810250:CDS | 50.0% |
| TCAAGTAGGTGTGGAACCCA+TGG | + | chr5_3:38501360-38501379 | Msa0810250:CDS | 50.0% | |
| TGGTCCACAAAGTGCACCAT+TGG | + | chr5_3:38501500-38501519 | Msa0810250:CDS | 50.0% | |
| GCAACCAATGGTGCACTTTG+TGG | - | chr5_3:38501507-38501526 | None:intergenic | 50.0% | |
| CGATGTGGGTCTTGATGGAA+TGG | + | chr5_3:38501536-38501555 | Msa0810250:CDS | 50.0% | |
| ! | AGCTCCTTTGGAAGCAGCTT+CGG | + | chr5_3:38501635-38501654 | Msa0810250:CDS | 50.0% |
| GGAGCTTATCCTGGTTATGC+TGG | + | chr5_3:38501681-38501700 | Msa0810250:CDS | 50.0% | |
| TTATGCTGGGGACCTTCTAG+TGG | + | chr5_3:38501695-38501714 | Msa0810250:CDS | 50.0% | |
| CGGTTAAAAGAGGGCCTTTG+TGG | - | chr5_3:38500993-38501012 | None:intergenic | 50.0% | |
| GGCAACTGATGGTTGTGATG+TGG | - | chr5_3:38501121-38501140 | None:intergenic | 50.0% | |
| ! | TTCGGTTGATTTCCACCACG+TGG | - | chr5_3:38501142-38501161 | None:intergenic | 50.0% |
| ! | GTTAACCTAGCTCTCTCGCT+AGG | + | chr5_3:38501195-38501214 | Msa0810250:CDS | 50.0% |
| TCAAGTAGGTGTGGAACCCA+TGG | + | chr5_3:38501360-38501379 | Msa0810250:CDS | 50.0% | |
| TGGTCCACAAAGTGCACCAT+TGG | + | chr5_3:38501500-38501519 | Msa0810250:CDS | 50.0% | |
| GCAACCAATGGTGCACTTTG+TGG | - | chr5_3:38501507-38501526 | None:intergenic | 50.0% | |
| CGATGTGGGTCTTGATGGAA+TGG | + | chr5_3:38501536-38501555 | Msa0810250:CDS | 50.0% | |
| ! | AGCTCCTTTGGAAGCAGCTT+CGG | + | chr5_3:38501635-38501654 | Msa0810250:CDS | 50.0% |
| GGAGCTTATCCTGGTTATGC+TGG | + | chr5_3:38501681-38501700 | Msa0810250:CDS | 50.0% | |
| TTATGCTGGGGACCTTCTAG+TGG | + | chr5_3:38501695-38501714 | Msa0810250:CDS | 50.0% | |
| CACAACCATCAGTTGCCACG+TGG | + | chr5_3:38501124-38501143 | Msa0810250:CDS | 55.0% | |
| AACCATCAGTTGCCACGTGG+TGG | + | chr5_3:38501127-38501146 | Msa0810250:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | - | chr5_3:38501132-38501151 | None:intergenic | 55.0% | |
| GAGTACCTAGCGAGAGAGCT+AGG | - | chr5_3:38501203-38501222 | None:intergenic | 55.0% | |
| ! | AATGTGCTGGTCAATGCGCG+TGG | + | chr5_3:38501457-38501476 | Msa0810250:CDS | 55.0% |
| CAAGCCGAAGCTGCTTCCAA+AGG | - | chr5_3:38501642-38501661 | None:intergenic | 55.0% | |
| ! | GAAGCAGCTTCGGCTTGTAC+CGG | + | chr5_3:38501645-38501664 | Msa0810250:CDS | 55.0% |
| AGAAGGTCCCCAGCATAACC+AGG | - | chr5_3:38501693-38501712 | None:intergenic | 55.0% | |
| CACAACCATCAGTTGCCACG+TGG | + | chr5_3:38501124-38501143 | Msa0810250:CDS | 55.0% | |
| AACCATCAGTTGCCACGTGG+TGG | + | chr5_3:38501127-38501146 | Msa0810250:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | - | chr5_3:38501132-38501151 | None:intergenic | 55.0% | |
| GAGTACCTAGCGAGAGAGCT+AGG | - | chr5_3:38501203-38501222 | None:intergenic | 55.0% | |
| ! | AATGTGCTGGTCAATGCGCG+TGG | + | chr5_3:38501457-38501476 | Msa0810250:CDS | 55.0% |
| CAAGCCGAAGCTGCTTCCAA+AGG | - | chr5_3:38501642-38501661 | None:intergenic | 55.0% | |
| ! | GAAGCAGCTTCGGCTTGTAC+CGG | + | chr5_3:38501645-38501664 | Msa0810250:CDS | 55.0% |
| AGAAGGTCCCCAGCATAACC+AGG | - | chr5_3:38501693-38501712 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 38500877 | 38501824 | 38500877 | ID=Msa0810250;Name=Msa0810250 |
| chr5_3 | mRNA | 38500877 | 38501824 | 38500877 | ID=Msa0810250-mRNA-1;Parent=Msa0810250;Name=Msa0810250-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|-1|0|1|-1|1|1|0|315 |
| chr5_3 | exon | 38500877 | 38501824 | 38500877 | ID=Msa0810250-mRNA-1:exon:11728;Parent=Msa0810250-mRNA-1 |
| chr5_3 | CDS | 38500877 | 38501824 | 38500877 | ID=Msa0810250-mRNA-1:cds;Parent=Msa0810250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
