AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0747240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0747240 MtrunA17_Chr1g0192131 84.058 414 39 8 1 399 1 402 0.0 561
Msa0747240 MtrunA17_Chr7g0272571 34.837 399 177 16 18 399 33 365 1.64e-33 128
Msa0747240 MtrunA17_Chr7g0269081 43.284 134 64 3 1 130 1 126 1.80e-19 88.2
Msa0747240 MtrunA17_Chr1g0208301 52.000 75 35 1 9 83 4 77 1.39e-17 83.6
Msa0747240 MtrunA17_Chr2g0287751 56.944 72 30 1 15 86 7 77 1.57e-17 84.3
Msa0747240 MtrunA17_Chr4g0065651 54.054 74 33 1 13 86 5 77 7.52e-17 82.4
Msa0747240 MtrunA17_Chr0c22g0493881 54.054 74 33 1 13 86 5 77 1.23e-16 80.9
Msa0747240 MtrunA17_Chr4g0065621 54.054 74 33 1 13 86 5 77 7.03e-16 78.6
Msa0747240 MtrunA17_Chr2g0287741 59.155 71 28 1 18 88 15 84 1.17e-15 78.6
Msa0747240 MtrunA17_Chr7g0218981 39.535 86 47 2 15 96 1 85 1.73e-15 72.8
Msa0747240 MtrunA17_Chr1g0191671 49.275 69 34 1 15 83 7 74 5.24e-15 76.6
Msa0747240 MtrunA17_Chr2g0296001 48.235 85 43 1 1 85 56 139 1.12e-14 74.7
Msa0747240 MtrunA17_Chr4g0036931 41.176 68 40 0 17 84 27 94 8.77e-14 68.6
Msa0747240 MtrunA17_Chr3g0111541 51.471 68 32 1 15 82 9 75 3.17e-13 68.6
Msa0747240 MtrunA17_Chr1g0198341 41.250 80 46 1 15 94 1 79 3.33e-13 64.7
Msa0747240 MtrunA17_Chr8g0382721 48.485 66 33 1 19 84 30 94 1.32e-12 65.1
Msa0747240 MtrunA17_Chr3g0145621 36.486 74 47 0 11 84 19 92 2.24e-12 64.7
Msa0747240 MtrunA17_Chr2g0285561 39.091 110 62 4 19 125 9 116 2.83e-12 67.0
Msa0747240 MtrunA17_Chr3g0115421 46.032 63 33 1 22 84 30 91 7.98e-12 62.8
Msa0747240 MtrunA17_Chr3g0124411 44.776 67 36 1 18 84 30 95 3.52e-11 61.2
Msa0747240 MtrunA17_Chr1g0160201 37.500 72 44 1 13 84 20 90 5.94e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0747240 AT5G27690.1 50.495 101 45 2 9 105 21 120 3.75e-22 97.1
Msa0747240 AT1G56210.1 59.420 69 27 1 17 85 39 106 1.86e-18 86.7
Msa0747240 AT3G06130.2 52.703 74 34 1 13 86 5 77 7.89e-17 81.6
Msa0747240 AT3G06130.1 52.703 74 34 1 13 86 5 77 1.24e-16 82.0
Msa0747240 AT5G19090.2 52.703 74 34 1 13 86 5 77 1.95e-16 81.3
Msa0747240 AT5G19090.3 52.703 74 34 1 13 86 5 77 1.95e-16 81.3
Msa0747240 AT5G19090.5 52.703 74 34 1 13 86 5 77 2.52e-16 81.3
Msa0747240 AT5G19090.4 52.703 74 34 1 13 86 5 77 2.52e-16 81.3
Msa0747240 AT5G19090.1 52.703 74 34 1 13 86 5 77 2.52e-16 81.3
Msa0747240 AT1G23000.1 48.750 80 39 2 15 93 10 88 3.27e-16 79.7
Msa0747240 AT1G23000.2 48.750 80 39 2 15 93 70 148 9.71e-16 79.0
Msa0747240 AT5G37860.1 54.545 66 29 1 18 83 10 74 5.65e-15 74.7
Msa0747240 AT3G56240.3 36.449 107 65 2 18 122 3 108 2.93e-14 69.3
Msa0747240 AT3G56240.1 36.449 107 65 2 18 122 3 108 2.93e-14 69.3
Msa0747240 AT3G05220.1 47.826 69 35 1 15 83 7 74 1.81e-13 72.4
Msa0747240 AT1G66240.1 40.541 74 43 1 18 91 33 105 1.58e-12 63.9
Msa0747240 AT5G66110.3 32.941 85 56 1 1 84 1 85 2.59e-12 64.7
Msa0747240 AT5G66110.1 32.941 85 56 1 1 84 1 85 2.59e-12 64.7
Msa0747240 AT3G56240.2 34.343 99 62 2 26 122 1 98 2.05e-11 60.8
Msa0747240 AT5G66110.2 38.983 59 36 0 26 84 1 59 3.17e-11 60.8
Msa0747240 AT4G38580.1 37.313 67 42 0 18 84 26 92 4.55e-11 61.2
Msa0747240 AT4G38580.2 37.313 67 42 0 18 84 26 92 4.55e-11 61.2
Msa0747240 AT4G35060.1 34.722 72 47 0 13 84 20 91 5.52e-11 60.8
Msa0747240 AT4G08570.1 41.176 68 38 2 18 84 26 92 9.80e-11 60.1

Find 111 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGTTCTTCTGGGTCTTTC+TGG 0.102017 5_1:+70912053 Msa0747240:three_prime_UTR
TCTTTGTTCTTCTCTGGTTT+TGG 0.218419 5_1:-70910954 None:intergenic
TGTGATGAATTATACAATTC+TGG 0.246285 5_1:-70911788 None:intergenic
GTAGAATAATAGAGTTCTTC+TGG 0.254935 5_1:+70912043 Msa0747240:three_prime_UTR
GCCGTTAACTTCAACGTTCT+TGG 0.279229 5_1:-70911078 None:intergenic
TGAAATACATACAACTTGTA+TGG 0.308571 5_1:+70911901 Msa0747240:three_prime_UTR
CGTTTCTCTTTGTTCTTCTC+TGG 0.318478 5_1:-70910960 None:intergenic
AACATGCTTCCCTGTCTTGT+TGG 0.331354 5_1:-70910889 None:intergenic
TACAACTTGTATGGGGCATA+TGG 0.343427 5_1:+70911910 Msa0747240:three_prime_UTR
AGTACTTTGTTTGCTTTGAA+TGG 0.351898 5_1:+70912009 Msa0747240:three_prime_UTR
GCTATCACCACCTGTGTTAC+CGG 0.352277 5_1:-70911333 None:intergenic
CCCGGTTGTGGAACCTTCGT+TGG 0.354242 5_1:-70911150 None:intergenic
ATTCAAGTATTGTCCTAGTA+TGG 0.366983 5_1:-70912114 None:intergenic
ACCTGTGTTACCGGTTGAAC+CGG 0.367015 5_1:-70911324 None:intergenic
GGTTCATACGTGTACGGCCT+TGG 0.369283 5_1:-70911767 None:intergenic
CTGTCTTGTTGGTCAGTTTG+TGG 0.373603 5_1:-70910878 None:intergenic
TTTCATGGGCAAGTACATTC+AGG 0.376558 5_1:+70911512 Msa0747240:CDS
GCACCGGGTACTGGTGGTTC+AGG 0.381070 5_1:+70911449 Msa0747240:CDS
AAAGCGTACTTTGAAATTGA+TGG 0.384277 5_1:-70910308 None:intergenic
CCCAACGAAGGTTCCACAAC+CGG 0.387354 5_1:+70911149 Msa0747240:CDS
ACTGTTTGCTTTCTCACCTC+TGG 0.389171 5_1:-70911206 None:intergenic
ACAACTTGTATGGGGCATAT+GGG 0.401871 5_1:+70911911 Msa0747240:three_prime_UTR
TCATGTGATTTGTAATCATT+TGG 0.414052 5_1:+70911864 Msa0747240:exon
TTCTCGGCTACCGGTTTGGC+TGG 0.414295 5_1:-70911236 None:intergenic
GGTTCCACAACCGGGAAAAC+CGG 0.417195 5_1:+70911158 Msa0747240:CDS
CTTCACTTCAAACTTTCAAA+TGG 0.418439 5_1:+70910375 Msa0747240:exon
TCCAAGAACGTTGAAGTTAA+CGG 0.422113 5_1:+70911077 Msa0747240:CDS
AACTTCAACGTTCTTGGATG+TGG 0.423011 5_1:-70911072 None:intergenic
AATGAGAAAACCGGTTCAAC+CGG 0.423174 5_1:+70911314 Msa0747240:CDS
CAGGGAAGCATGTTGAGCTT+TGG 0.426685 5_1:+70910898 Msa0747240:CDS
ATGACGTGGCGGTACTTCAT+TGG 0.427491 5_1:-70911546 None:intergenic
TTCCGTGATGCACCGGGTAC+TGG 0.429866 5_1:+70911440 Msa0747240:CDS
CTTGCAGCCTGCGCAGTGAA+TGG 0.433758 5_1:-70910587 None:intergenic
GTGGCGGTACTTCATTGGTT+AGG 0.440696 5_1:-70911541 None:intergenic
AGTTTGAAGTGAAGGAGAAA+AGG 0.440825 5_1:-70910366 None:intergenic
GTACTGGTGGTTCAGGTAAC+CGG 0.450368 5_1:+70911456 Msa0747240:CDS
CGGTCAAATGGTCAATTTCA+AGG 0.454759 5_1:+70911476 Msa0747240:CDS
CCGGTTGTGGAACCTTCGTT+GGG 0.457013 5_1:-70911149 None:intergenic
CTTTGTTTGCTTTGAATGGA+TGG 0.457342 5_1:+70912013 Msa0747240:three_prime_UTR
CAAAAGCTTCAAAAGGAAGT+TGG 0.457861 5_1:+70911967 Msa0747240:three_prime_UTR
GATGAATACGGGAAATGAAA+TGG 0.459560 5_1:+70911736 Msa0747240:CDS
GGTTCTTCATTATCATCGTT+AGG 0.461785 5_1:-70911284 None:intergenic
TGATGGCTCACGGTAACAAC+CGG 0.471619 5_1:-70911638 None:intergenic
TAGAATAATAGAGTTCTTCT+GGG 0.474816 5_1:+70912044 Msa0747240:three_prime_UTR
GAAATACATACAACTTGTAT+GGG 0.475009 5_1:+70911902 Msa0747240:three_prime_UTR
CACATGACATTACACGCATT+AGG 0.475926 5_1:-70911848 None:intergenic
ATCACATGCGCGTATTGATA+CGG 0.476164 5_1:-70911716 None:intergenic
CACAAACTGACCAACAAGAC+AGG 0.483302 5_1:+70910879 Msa0747240:CDS
TTTCACCCACCACAGTACTA+TGG 0.484299 5_1:+70911584 Msa0747240:CDS
GAAAACAACAACAACGGAAC+AGG 0.484637 5_1:+70911035 Msa0747240:CDS
CAGAGAAGAACAAAGAGAAA+CGG 0.486281 5_1:+70910961 Msa0747240:CDS
ATCAGAGCAAAAGCTTCAAA+AGG 0.490471 5_1:+70911960 Msa0747240:three_prime_UTR
TACGTGTACGGCCTTGGCTG+AGG 0.491015 5_1:-70911761 None:intergenic
CTTGAAATTGACCATTTGAC+CGG 0.491863 5_1:-70911475 None:intergenic
AAAGTCTCCATTCACTGCGC+AGG 0.492565 5_1:+70910580 Msa0747240:CDS
AGTGGTGTTACCAGCCAAAC+CGG 0.494179 5_1:+70911226 Msa0747240:CDS
GGTTCAGGTAACCGGTCAAA+TGG 0.494989 5_1:+70911464 Msa0747240:CDS
CAACTTGTATGGGGCATATG+GGG 0.495332 5_1:+70911912 Msa0747240:three_prime_UTR
GCTTTGAATGGATGGGAAGT+TGG 0.505773 5_1:+70912021 Msa0747240:three_prime_UTR
TGAACACTTCCGTGATGCAC+CGG 0.507152 5_1:+70911433 Msa0747240:CDS
GTGATTTGTAATCATTTGGT+TGG 0.509685 5_1:+70911868 Msa0747240:exon
AAGCGTACTTTGAAATTGAT+GGG 0.509913 5_1:-70910307 None:intergenic
CATTTGAAAGTTTGAAGTGA+AGG 0.514068 5_1:-70910374 None:intergenic
GCTAAAAGCGGCAACGGAAG+CGG 0.527918 5_1:+70911107 Msa0747240:CDS
ATACGCGCATGTGATGAATA+CGG 0.539599 5_1:+70911724 Msa0747240:CDS
TATCCTAGCAGCAGGAGTTA+CGG 0.548387 5_1:+70911668 Msa0747240:CDS
GCAGCAGCAAAATGAGATTG+AGG 0.556418 5_1:-70911611 None:intergenic
ATACAGCGTATCCTAGCAGC+AGG 0.556763 5_1:+70911660 Msa0747240:CDS
TACGCGCATGTGATGAATAC+GGG 0.564097 5_1:+70911725 Msa0747240:CDS
TGCGCGTATTGATACGGTTG+TGG 0.564403 5_1:-70911710 None:intergenic
TTTGTTTGCTTTGAATGGAT+GGG 0.566831 5_1:+70912014 Msa0747240:three_prime_UTR
CCAACGAAGGTTCCACAACC+GGG 0.575422 5_1:+70911150 Msa0747240:CDS
CCATTGACGAATGAGAAAAC+CGG 0.578008 5_1:+70911305 Msa0747240:CDS
GAACACTTCCGTGATGCACC+GGG 0.582325 5_1:+70911434 Msa0747240:CDS
TGCTAGGATACGCTGTATGA+TGG 0.586279 5_1:-70911655 None:intergenic
AACACCGCTAAAAGCGGCAA+CGG 0.586332 5_1:+70911101 Msa0747240:CDS
ACCGGTTCAACCGGTAACAC+AGG 0.589012 5_1:+70911323 Msa0747240:CDS
GCACCGTAACTCCTGCTGCT+AGG 0.592158 5_1:-70911671 None:intergenic
AATTCTGGTTCATACGTGTA+CGG 0.599673 5_1:-70911773 None:intergenic
TTACCTGAACCACCAGTACC+CGG 0.601937 5_1:-70911452 None:intergenic
CACCAGTACCCGGTGCATCA+CGG 0.602569 5_1:-70911442 None:intergenic
CGTGATGCACCGGGTACTGG+TGG 0.603532 5_1:+70911443 Msa0747240:CDS
TTCACAACATCTCAACTACA+AGG 0.605083 5_1:+70910426 Msa0747240:CDS
TCTGTGATATATACCATACT+AGG 0.605876 5_1:+70912101 Msa0747240:three_prime_UTR
ATGAAATGGAGCCTCAGCCA+AGG 0.607085 5_1:+70911750 Msa0747240:CDS
AACGGCAACACCGCTAAAAG+CGG 0.614579 5_1:+70911095 Msa0747240:CDS
AACTTGTATGGGGCATATGG+GGG 0.616605 5_1:+70911913 Msa0747240:three_prime_UTR
AACAGTGAAAACAACAACAA+CGG 0.621781 5_1:+70911029 Msa0747240:CDS
CTCTTGAACATGCACCACGC+CGG 0.629416 5_1:-70911177 None:intergenic
TTCAGCTTGTGTCTCTGATG+CGG 0.631924 5_1:-70910398 None:intergenic
AAAATTCTTCAAAACATACA+AGG 0.632084 5_1:+70910622 Msa0747240:CDS
ACAAACTGACCAACAAGACA+GGG 0.636532 5_1:+70910880 Msa0747240:CDS
AAATAAACAAAAGAATCTGA+CGG 0.643148 5_1:-70911812 None:intergenic
ATACGCTGTATGATGGCTCA+CGG 0.643410 5_1:-70911648 None:intergenic
AACACAGGTGGTGATAGCAG+TGG 0.653182 5_1:+70911338 Msa0747240:CDS
TGGCTCACGGTAACAACCGG+TGG 0.659488 5_1:-70911635 None:intergenic
GGAGGACCATAGTACTGTGG+TGG 0.659974 5_1:-70911590 None:intergenic
AAATACATACAACTTGTATG+GGG 0.662949 5_1:+70911903 Msa0747240:three_prime_UTR
TGGTATATATCACAGAGGCA+AGG 0.664277 5_1:-70912094 None:intergenic
GCGTATTGATACGGTTGTGG+AGG 0.666718 5_1:-70911707 None:intergenic
GCAGCAAAATGAGATTGAGG+AGG 0.681939 5_1:-70911608 None:intergenic
GGTTCAACCGGTAACACAGG+TGG 0.694255 5_1:+70911326 Msa0747240:CDS
AGAGGTGAGAAAGCAAACAG+TGG 0.698353 5_1:+70911208 Msa0747240:CDS
AAAGTTAACAAACCCAACGA+AGG 0.699189 5_1:+70911137 Msa0747240:CDS
TGTTCAAGAGCTAAAGCCAG+AGG 0.699916 5_1:+70911190 Msa0747240:CDS
CACAACCGGGAAAACCGGCG+TGG 0.702327 5_1:+70911163 Msa0747240:CDS
TGTTCGTTAATGTAATGACG+TGG 0.709464 5_1:-70911560 None:intergenic
GAGGACCATAGTACTGTGGT+GGG 0.719210 5_1:-70911589 None:intergenic
TCGTTAATGTAATGACGTGG+CGG 0.723759 5_1:-70911557 None:intergenic
TGAGGAGGACCATAGTACTG+TGG 0.730684 5_1:-70911593 None:intergenic
TAGTATGGTATATATCACAG+AGG 0.783780 5_1:-70912099 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAAAGTAAAAAATAA+AGG - chr5_1:70910681-70910700 None:intergenic 10.0%
!! AAAATGAAAGTAAAAAATAA+AGG - chr5_1:70910681-70910700 None:intergenic 10.0%
!! AAAATTCTTCAAAACATACA+AGG + chr5_1:70910622-70910641 Msa0747240:CDS 20.0%
!! CAAAGAATGAATACTAAAAA+TGG - chr5_1:70910723-70910742 None:intergenic 20.0%
!!! TTTTAGTATTCATTCTTTGA+AGG + chr5_1:70910724-70910743 Msa0747240:intron 20.0%
!! TTTAGTATTCATTCTTTGAA+GGG + chr5_1:70910725-70910744 Msa0747240:intron 20.0%
!!! TTTATACTTTTCTGTAATCT+AGG + chr5_1:70910780-70910799 Msa0747240:intron 20.0%
!! TGAAAAAGAAGAAAAAGAAA+GGG + chr5_1:70911363-70911382 Msa0747240:CDS 20.0%
!! AAATAAACAAAAGAATCTGA+CGG - chr5_1:70911815-70911834 None:intergenic 20.0%
!! AAAATTCTTCAAAACATACA+AGG + chr5_1:70910622-70910641 Msa0747240:CDS 20.0%
!! CAAAGAATGAATACTAAAAA+TGG - chr5_1:70910723-70910742 None:intergenic 20.0%
!!! TTTTAGTATTCATTCTTTGA+AGG + chr5_1:70910724-70910743 Msa0747240:intron 20.0%
!! TTTAGTATTCATTCTTTGAA+GGG + chr5_1:70910725-70910744 Msa0747240:intron 20.0%
!!! TTTATACTTTTCTGTAATCT+AGG + chr5_1:70910780-70910799 Msa0747240:intron 20.0%
!! TGAAAAAGAAGAAAAAGAAA+GGG + chr5_1:70911363-70911382 Msa0747240:CDS 20.0%
!! AAATAAACAAAAGAATCTGA+CGG - chr5_1:70911815-70911834 None:intergenic 20.0%
! AATGAAATGAAAGTAAGAGA+TGG - chr5_1:70910465-70910484 None:intergenic 25.0%
! GCAACAAAAAGTAATAGTAA+CGG + chr5_1:70910830-70910849 Msa0747240:CDS 25.0%
! CAACAAAAAGTAATAGTAAC+GGG + chr5_1:70910831-70910850 Msa0747240:CDS 25.0%
! AACAAAAAGTAATAGTAACG+GGG + chr5_1:70910832-70910851 Msa0747240:CDS 25.0%
!!! TTCTTCTTTTTTGATTCTGT+TGG - chr5_1:70910930-70910949 None:intergenic 25.0%
! GTGAAAAAGAAGAAAAAGAA+AGG + chr5_1:70911362-70911381 Msa0747240:CDS 25.0%
!! GTCAAAGTAGTAATTTTCAT+GGG + chr5_1:70911498-70911517 Msa0747240:CDS 25.0%
! TGTGATGAATTATACAATTC+TGG - chr5_1:70911791-70911810 None:intergenic 25.0%
!! TCATGTGATTTGTAATCATT+TGG + chr5_1:70911864-70911883 Msa0747240:exon 25.0%
! TGAAATACATACAACTTGTA+TGG + chr5_1:70911901-70911920 Msa0747240:three_prime_UTR 25.0%
! GAAATACATACAACTTGTAT+GGG + chr5_1:70911902-70911921 Msa0747240:three_prime_UTR 25.0%
! AAATACATACAACTTGTATG+GGG + chr5_1:70911903-70911922 Msa0747240:three_prime_UTR 25.0%
! TAGAATAATAGAGTTCTTCT+GGG + chr5_1:70912044-70912063 Msa0747240:three_prime_UTR 25.0%
! AATGAAATGAAAGTAAGAGA+TGG - chr5_1:70910465-70910484 None:intergenic 25.0%
! GCAACAAAAAGTAATAGTAA+CGG + chr5_1:70910830-70910849 Msa0747240:CDS 25.0%
! CAACAAAAAGTAATAGTAAC+GGG + chr5_1:70910831-70910850 Msa0747240:CDS 25.0%
! AACAAAAAGTAATAGTAACG+GGG + chr5_1:70910832-70910851 Msa0747240:CDS 25.0%
!!! TTCTTCTTTTTTGATTCTGT+TGG - chr5_1:70910930-70910949 None:intergenic 25.0%
! GTGAAAAAGAAGAAAAAGAA+AGG + chr5_1:70911362-70911381 Msa0747240:CDS 25.0%
!! GTCAAAGTAGTAATTTTCAT+GGG + chr5_1:70911498-70911517 Msa0747240:CDS 25.0%
! TGTGATGAATTATACAATTC+TGG - chr5_1:70911791-70911810 None:intergenic 25.0%
!! TCATGTGATTTGTAATCATT+TGG + chr5_1:70911864-70911883 Msa0747240:exon 25.0%
! TGAAATACATACAACTTGTA+TGG + chr5_1:70911901-70911920 Msa0747240:three_prime_UTR 25.0%
! GAAATACATACAACTTGTAT+GGG + chr5_1:70911902-70911921 Msa0747240:three_prime_UTR 25.0%
! AAATACATACAACTTGTATG+GGG + chr5_1:70911903-70911922 Msa0747240:three_prime_UTR 25.0%
! TAGAATAATAGAGTTCTTCT+GGG + chr5_1:70912044-70912063 Msa0747240:three_prime_UTR 25.0%
!! AAGCGTACTTTGAAATTGAT+GGG - chr5_1:70910310-70910329 None:intergenic 30.0%
!! AAAGCGTACTTTGAAATTGA+TGG - chr5_1:70910311-70910330 None:intergenic 30.0%
! CATTTGAAAGTTTGAAGTGA+AGG - chr5_1:70910377-70910396 None:intergenic 30.0%
CTTCACTTCAAACTTTCAAA+TGG + chr5_1:70910375-70910394 Msa0747240:exon 30.0%
!!! TTTTTTGATTCTGTTGGTTC+AGG - chr5_1:70910924-70910943 None:intergenic 30.0%
AACAGTGAAAACAACAACAA+CGG + chr5_1:70911029-70911048 Msa0747240:CDS 30.0%
AAGAAGAAAAAGAAAGGGAA+AGG + chr5_1:70911368-70911387 Msa0747240:CDS 30.0%
! GGTCAAAGTAGTAATTTTCA+TGG + chr5_1:70911497-70911516 Msa0747240:CDS 30.0%
! GTGATTTGTAATCATTTGGT+TGG + chr5_1:70911868-70911887 Msa0747240:exon 30.0%
! AGTACTTTGTTTGCTTTGAA+TGG + chr5_1:70912009-70912028 Msa0747240:three_prime_UTR 30.0%
! TTTGTTTGCTTTGAATGGAT+GGG + chr5_1:70912014-70912033 Msa0747240:three_prime_UTR 30.0%
GTAGAATAATAGAGTTCTTC+TGG + chr5_1:70912043-70912062 Msa0747240:three_prime_UTR 30.0%
TAGTATGGTATATATCACAG+AGG - chr5_1:70912102-70912121 None:intergenic 30.0%
TCTGTGATATATACCATACT+AGG + chr5_1:70912101-70912120 Msa0747240:three_prime_UTR 30.0%
! ATTCAAGTATTGTCCTAGTA+TGG - chr5_1:70912117-70912136 None:intergenic 30.0%
!! AAGCGTACTTTGAAATTGAT+GGG - chr5_1:70910310-70910329 None:intergenic 30.0%
!! AAAGCGTACTTTGAAATTGA+TGG - chr5_1:70910311-70910330 None:intergenic 30.0%
! CATTTGAAAGTTTGAAGTGA+AGG - chr5_1:70910377-70910396 None:intergenic 30.0%
CTTCACTTCAAACTTTCAAA+TGG + chr5_1:70910375-70910394 Msa0747240:exon 30.0%
!!! TTTTTTGATTCTGTTGGTTC+AGG - chr5_1:70910924-70910943 None:intergenic 30.0%
AACAGTGAAAACAACAACAA+CGG + chr5_1:70911029-70911048 Msa0747240:CDS 30.0%
AAGAAGAAAAAGAAAGGGAA+AGG + chr5_1:70911368-70911387 Msa0747240:CDS 30.0%
! GGTCAAAGTAGTAATTTTCA+TGG + chr5_1:70911497-70911516 Msa0747240:CDS 30.0%
! GTGATTTGTAATCATTTGGT+TGG + chr5_1:70911868-70911887 Msa0747240:exon 30.0%
! AGTACTTTGTTTGCTTTGAA+TGG + chr5_1:70912009-70912028 Msa0747240:three_prime_UTR 30.0%
! TTTGTTTGCTTTGAATGGAT+GGG + chr5_1:70912014-70912033 Msa0747240:three_prime_UTR 30.0%
GTAGAATAATAGAGTTCTTC+TGG + chr5_1:70912043-70912062 Msa0747240:three_prime_UTR 30.0%
TAGTATGGTATATATCACAG+AGG - chr5_1:70912102-70912121 None:intergenic 30.0%
TCTGTGATATATACCATACT+AGG + chr5_1:70912101-70912120 Msa0747240:three_prime_UTR 30.0%
! ATTCAAGTATTGTCCTAGTA+TGG - chr5_1:70912117-70912136 None:intergenic 30.0%
! AGTTTGAAGTGAAGGAGAAA+AGG - chr5_1:70910369-70910388 None:intergenic 35.0%
TTCACAACATCTCAACTACA+AGG + chr5_1:70910426-70910445 Msa0747240:CDS 35.0%
AACAAGTTTAGAAGCAGTTG+AGG - chr5_1:70910527-70910546 None:intergenic 35.0%
!! TCTTTGTTCTTCTCTGGTTT+TGG - chr5_1:70910957-70910976 None:intergenic 35.0%
CAGAGAAGAACAAAGAGAAA+CGG + chr5_1:70910961-70910980 Msa0747240:CDS 35.0%
TCCAAGAACGTTGAAGTTAA+CGG + chr5_1:70911077-70911096 Msa0747240:CDS 35.0%
AAAGTTAACAAACCCAACGA+AGG + chr5_1:70911137-70911156 Msa0747240:CDS 35.0%
GGTTCTTCATTATCATCGTT+AGG - chr5_1:70911287-70911306 None:intergenic 35.0%
CTTGAAATTGACCATTTGAC+CGG - chr5_1:70911478-70911497 None:intergenic 35.0%
TGTTCGTTAATGTAATGACG+TGG - chr5_1:70911563-70911582 None:intergenic 35.0%
GATGAATACGGGAAATGAAA+TGG + chr5_1:70911736-70911755 Msa0747240:CDS 35.0%
!! AATTCTGGTTCATACGTGTA+CGG - chr5_1:70911776-70911795 None:intergenic 35.0%
ATCAGAGCAAAAGCTTCAAA+AGG + chr5_1:70911960-70911979 Msa0747240:three_prime_UTR 35.0%
CAAAAGCTTCAAAAGGAAGT+TGG + chr5_1:70911967-70911986 Msa0747240:three_prime_UTR 35.0%
! CTTTGTTTGCTTTGAATGGA+TGG + chr5_1:70912013-70912032 Msa0747240:three_prime_UTR 35.0%
! AGTTTGAAGTGAAGGAGAAA+AGG - chr5_1:70910369-70910388 None:intergenic 35.0%
TTCACAACATCTCAACTACA+AGG + chr5_1:70910426-70910445 Msa0747240:CDS 35.0%
AACAAGTTTAGAAGCAGTTG+AGG - chr5_1:70910527-70910546 None:intergenic 35.0%
!! TCTTTGTTCTTCTCTGGTTT+TGG - chr5_1:70910957-70910976 None:intergenic 35.0%
CAGAGAAGAACAAAGAGAAA+CGG + chr5_1:70910961-70910980 Msa0747240:CDS 35.0%
TCCAAGAACGTTGAAGTTAA+CGG + chr5_1:70911077-70911096 Msa0747240:CDS 35.0%
AAAGTTAACAAACCCAACGA+AGG + chr5_1:70911137-70911156 Msa0747240:CDS 35.0%
GGTTCTTCATTATCATCGTT+AGG - chr5_1:70911287-70911306 None:intergenic 35.0%
CTTGAAATTGACCATTTGAC+CGG - chr5_1:70911478-70911497 None:intergenic 35.0%
TGTTCGTTAATGTAATGACG+TGG - chr5_1:70911563-70911582 None:intergenic 35.0%
GATGAATACGGGAAATGAAA+TGG + chr5_1:70911736-70911755 Msa0747240:CDS 35.0%
!! AATTCTGGTTCATACGTGTA+CGG - chr5_1:70911776-70911795 None:intergenic 35.0%
ATCAGAGCAAAAGCTTCAAA+AGG + chr5_1:70911960-70911979 Msa0747240:three_prime_UTR 35.0%
CAAAAGCTTCAAAAGGAAGT+TGG + chr5_1:70911967-70911986 Msa0747240:three_prime_UTR 35.0%
! CTTTGTTTGCTTTGAATGGA+TGG + chr5_1:70912013-70912032 Msa0747240:three_prime_UTR 35.0%
! TACGGAAGAGTACGTTGTTA+GGG - chr5_1:70910496-70910515 None:intergenic 40.0%
GCAGTTGAGGAAGAATAGTA+CGG - chr5_1:70910514-70910533 None:intergenic 40.0%
CAGTTGTCTGAGAGACAAAA+TGG - chr5_1:70910555-70910574 None:intergenic 40.0%
ACAAACTGACCAACAAGACA+GGG + chr5_1:70910880-70910899 Msa0747240:CDS 40.0%
CGTTTCTCTTTGTTCTTCTC+TGG - chr5_1:70910963-70910982 None:intergenic 40.0%
GAAAACAACAACAACGGAAC+AGG + chr5_1:70911035-70911054 Msa0747240:CDS 40.0%
AACTTCAACGTTCTTGGATG+TGG - chr5_1:70911075-70911094 None:intergenic 40.0%
!!! CTAACTTTTTTCTCGGCTAC+CGG - chr5_1:70911248-70911267 None:intergenic 40.0%
!!! TGCGACGCTAACTTTTTTCT+CGG - chr5_1:70911255-70911274 None:intergenic 40.0%
CCATTGACGAATGAGAAAAC+CGG + chr5_1:70911305-70911324 Msa0747240:CDS 40.0%
! AATGAGAAAACCGGTTCAAC+CGG + chr5_1:70911314-70911333 Msa0747240:CDS 40.0%
CGGTCAAATGGTCAATTTCA+AGG + chr5_1:70911476-70911495 Msa0747240:CDS 40.0%
TTTCATGGGCAAGTACATTC+AGG + chr5_1:70911512-70911531 Msa0747240:CDS 40.0%
TCGTTAATGTAATGACGTGG+CGG - chr5_1:70911560-70911579 None:intergenic 40.0%
! ATCACATGCGCGTATTGATA+CGG - chr5_1:70911719-70911738 None:intergenic 40.0%
ATACGCGCATGTGATGAATA+CGG + chr5_1:70911724-70911743 Msa0747240:CDS 40.0%
CACATGACATTACACGCATT+AGG - chr5_1:70911851-70911870 None:intergenic 40.0%
TACAACTTGTATGGGGCATA+TGG + chr5_1:70911910-70911929 Msa0747240:three_prime_UTR 40.0%
ACAACTTGTATGGGGCATAT+GGG + chr5_1:70911911-70911930 Msa0747240:three_prime_UTR 40.0%
!!! TCTTTCTGGCTTTTGTTCAG+TGG + chr5_1:70912067-70912086 Msa0747240:three_prime_UTR 40.0%
TGGTATATATCACAGAGGCA+AGG - chr5_1:70912097-70912116 None:intergenic 40.0%
! TACGGAAGAGTACGTTGTTA+GGG - chr5_1:70910496-70910515 None:intergenic 40.0%
GCAGTTGAGGAAGAATAGTA+CGG - chr5_1:70910514-70910533 None:intergenic 40.0%
CAGTTGTCTGAGAGACAAAA+TGG - chr5_1:70910555-70910574 None:intergenic 40.0%
ACAAACTGACCAACAAGACA+GGG + chr5_1:70910880-70910899 Msa0747240:CDS 40.0%
CGTTTCTCTTTGTTCTTCTC+TGG - chr5_1:70910963-70910982 None:intergenic 40.0%
GAAAACAACAACAACGGAAC+AGG + chr5_1:70911035-70911054 Msa0747240:CDS 40.0%
AACTTCAACGTTCTTGGATG+TGG - chr5_1:70911075-70911094 None:intergenic 40.0%
!!! CTAACTTTTTTCTCGGCTAC+CGG - chr5_1:70911248-70911267 None:intergenic 40.0%
!!! TGCGACGCTAACTTTTTTCT+CGG - chr5_1:70911255-70911274 None:intergenic 40.0%
CCATTGACGAATGAGAAAAC+CGG + chr5_1:70911305-70911324 Msa0747240:CDS 40.0%
! AATGAGAAAACCGGTTCAAC+CGG + chr5_1:70911314-70911333 Msa0747240:CDS 40.0%
CGGTCAAATGGTCAATTTCA+AGG + chr5_1:70911476-70911495 Msa0747240:CDS 40.0%
TTTCATGGGCAAGTACATTC+AGG + chr5_1:70911512-70911531 Msa0747240:CDS 40.0%
TCGTTAATGTAATGACGTGG+CGG - chr5_1:70911560-70911579 None:intergenic 40.0%
! ATCACATGCGCGTATTGATA+CGG - chr5_1:70911719-70911738 None:intergenic 40.0%
ATACGCGCATGTGATGAATA+CGG + chr5_1:70911724-70911743 Msa0747240:CDS 40.0%
CACATGACATTACACGCATT+AGG - chr5_1:70911851-70911870 None:intergenic 40.0%
TACAACTTGTATGGGGCATA+TGG + chr5_1:70911910-70911929 Msa0747240:three_prime_UTR 40.0%
ACAACTTGTATGGGGCATAT+GGG + chr5_1:70911911-70911930 Msa0747240:three_prime_UTR 40.0%
!!! TCTTTCTGGCTTTTGTTCAG+TGG + chr5_1:70912067-70912086 Msa0747240:three_prime_UTR 40.0%
TGGTATATATCACAGAGGCA+AGG - chr5_1:70912097-70912116 None:intergenic 40.0%
TTCAGCTTGTGTCTCTGATG+CGG - chr5_1:70910401-70910420 None:intergenic 45.0%
! GTACGGAAGAGTACGTTGTT+AGG - chr5_1:70910497-70910516 None:intergenic 45.0%
! CTGTCTTGTTGGTCAGTTTG+TGG - chr5_1:70910881-70910900 None:intergenic 45.0%
CACAAACTGACCAACAAGAC+AGG + chr5_1:70910879-70910898 Msa0747240:CDS 45.0%
AACATGCTTCCCTGTCTTGT+TGG - chr5_1:70910892-70910911 None:intergenic 45.0%
GCCGTTAACTTCAACGTTCT+TGG - chr5_1:70911081-70911100 None:intergenic 45.0%
TGTTCAAGAGCTAAAGCCAG+AGG + chr5_1:70911190-70911209 Msa0747240:CDS 45.0%
ACTGTTTGCTTTCTCACCTC+TGG - chr5_1:70911209-70911228 None:intergenic 45.0%
AGAGGTGAGAAAGCAAACAG+TGG + chr5_1:70911208-70911227 Msa0747240:CDS 45.0%
!!! TTTTTTCTCGGCTACCGGTT+TGG - chr5_1:70911243-70911262 None:intergenic 45.0%
! CCGGTTTTCTCATTCGTCAA+TGG - chr5_1:70911308-70911327 None:intergenic 45.0%
TTTCACCCACCACAGTACTA+TGG + chr5_1:70911584-70911603 Msa0747240:CDS 45.0%
GCAGCAAAATGAGATTGAGG+AGG - chr5_1:70911611-70911630 None:intergenic 45.0%
GCAGCAGCAAAATGAGATTG+AGG - chr5_1:70911614-70911633 None:intergenic 45.0%
ATACGCTGTATGATGGCTCA+CGG - chr5_1:70911651-70911670 None:intergenic 45.0%
TGCTAGGATACGCTGTATGA+TGG - chr5_1:70911658-70911677 None:intergenic 45.0%
TATCCTAGCAGCAGGAGTTA+CGG + chr5_1:70911668-70911687 Msa0747240:CDS 45.0%
TACGCGCATGTGATGAATAC+GGG + chr5_1:70911725-70911744 Msa0747240:CDS 45.0%
CAACTTGTATGGGGCATATG+GGG + chr5_1:70911912-70911931 Msa0747240:three_prime_UTR 45.0%
AACTTGTATGGGGCATATGG+GGG + chr5_1:70911913-70911932 Msa0747240:three_prime_UTR 45.0%
! GCTTTGAATGGATGGGAAGT+TGG + chr5_1:70912021-70912040 Msa0747240:three_prime_UTR 45.0%
AGAGTTCTTCTGGGTCTTTC+TGG + chr5_1:70912053-70912072 Msa0747240:three_prime_UTR 45.0%
TTCAGCTTGTGTCTCTGATG+CGG - chr5_1:70910401-70910420 None:intergenic 45.0%
! GTACGGAAGAGTACGTTGTT+AGG - chr5_1:70910497-70910516 None:intergenic 45.0%
! CTGTCTTGTTGGTCAGTTTG+TGG - chr5_1:70910881-70910900 None:intergenic 45.0%
CACAAACTGACCAACAAGAC+AGG + chr5_1:70910879-70910898 Msa0747240:CDS 45.0%
AACATGCTTCCCTGTCTTGT+TGG - chr5_1:70910892-70910911 None:intergenic 45.0%
GCCGTTAACTTCAACGTTCT+TGG - chr5_1:70911081-70911100 None:intergenic 45.0%
TGTTCAAGAGCTAAAGCCAG+AGG + chr5_1:70911190-70911209 Msa0747240:CDS 45.0%
ACTGTTTGCTTTCTCACCTC+TGG - chr5_1:70911209-70911228 None:intergenic 45.0%
AGAGGTGAGAAAGCAAACAG+TGG + chr5_1:70911208-70911227 Msa0747240:CDS 45.0%
!!! TTTTTTCTCGGCTACCGGTT+TGG - chr5_1:70911243-70911262 None:intergenic 45.0%
! CCGGTTTTCTCATTCGTCAA+TGG - chr5_1:70911308-70911327 None:intergenic 45.0%
TTTCACCCACCACAGTACTA+TGG + chr5_1:70911584-70911603 Msa0747240:CDS 45.0%
GCAGCAAAATGAGATTGAGG+AGG - chr5_1:70911611-70911630 None:intergenic 45.0%
GCAGCAGCAAAATGAGATTG+AGG - chr5_1:70911614-70911633 None:intergenic 45.0%
ATACGCTGTATGATGGCTCA+CGG - chr5_1:70911651-70911670 None:intergenic 45.0%
TGCTAGGATACGCTGTATGA+TGG - chr5_1:70911658-70911677 None:intergenic 45.0%
TATCCTAGCAGCAGGAGTTA+CGG + chr5_1:70911668-70911687 Msa0747240:CDS 45.0%
TACGCGCATGTGATGAATAC+GGG + chr5_1:70911725-70911744 Msa0747240:CDS 45.0%
CAACTTGTATGGGGCATATG+GGG + chr5_1:70911912-70911931 Msa0747240:three_prime_UTR 45.0%
AACTTGTATGGGGCATATGG+GGG + chr5_1:70911913-70911932 Msa0747240:three_prime_UTR 45.0%
! GCTTTGAATGGATGGGAAGT+TGG + chr5_1:70912021-70912040 Msa0747240:three_prime_UTR 45.0%
AGAGTTCTTCTGGGTCTTTC+TGG + chr5_1:70912053-70912072 Msa0747240:three_prime_UTR 45.0%
AAAGTCTCCATTCACTGCGC+AGG + chr5_1:70910580-70910599 Msa0747240:CDS 50.0%
! CAGGGAAGCATGTTGAGCTT+TGG + chr5_1:70910898-70910917 Msa0747240:CDS 50.0%
AACGGCAACACCGCTAAAAG+CGG + chr5_1:70911095-70911114 Msa0747240:CDS 50.0%
AACACCGCTAAAAGCGGCAA+CGG + chr5_1:70911101-70911120 Msa0747240:CDS 50.0%
!! AGTGGTGTTACCAGCCAAAC+CGG + chr5_1:70911226-70911245 Msa0747240:CDS 50.0%
! ACCTGTGTTACCGGTTGAAC+CGG - chr5_1:70911327-70911346 None:intergenic 50.0%
GCTATCACCACCTGTGTTAC+CGG - chr5_1:70911336-70911355 None:intergenic 50.0%
AACACAGGTGGTGATAGCAG+TGG + chr5_1:70911338-70911357 Msa0747240:CDS 50.0%
TGAACACTTCCGTGATGCAC+CGG + chr5_1:70911433-70911452 Msa0747240:CDS 50.0%
TTACCTGAACCACCAGTACC+CGG - chr5_1:70911455-70911474 None:intergenic 50.0%
! GTACTGGTGGTTCAGGTAAC+CGG + chr5_1:70911456-70911475 Msa0747240:CDS 50.0%
GGTTCAGGTAACCGGTCAAA+TGG + chr5_1:70911464-70911483 Msa0747240:CDS 50.0%
! GTGGCGGTACTTCATTGGTT+AGG - chr5_1:70911544-70911563 None:intergenic 50.0%
ATGACGTGGCGGTACTTCAT+TGG - chr5_1:70911549-70911568 None:intergenic 50.0%
GAGGACCATAGTACTGTGGT+GGG - chr5_1:70911592-70911611 None:intergenic 50.0%
TGAGGAGGACCATAGTACTG+TGG - chr5_1:70911596-70911615 None:intergenic 50.0%
! TCATTTTGCTGCTGCTCCAC+CGG + chr5_1:70911619-70911638 Msa0747240:CDS 50.0%
TGATGGCTCACGGTAACAAC+CGG - chr5_1:70911641-70911660 None:intergenic 50.0%
ATACAGCGTATCCTAGCAGC+AGG + chr5_1:70911660-70911679 Msa0747240:CDS 50.0%
! GCGTATTGATACGGTTGTGG+AGG - chr5_1:70911710-70911729 None:intergenic 50.0%
! TGCGCGTATTGATACGGTTG+TGG - chr5_1:70911713-70911732 None:intergenic 50.0%
ATGAAATGGAGCCTCAGCCA+AGG + chr5_1:70911750-70911769 Msa0747240:CDS 50.0%
AAAGTCTCCATTCACTGCGC+AGG + chr5_1:70910580-70910599 Msa0747240:CDS 50.0%
! CAGGGAAGCATGTTGAGCTT+TGG + chr5_1:70910898-70910917 Msa0747240:CDS 50.0%
AACGGCAACACCGCTAAAAG+CGG + chr5_1:70911095-70911114 Msa0747240:CDS 50.0%
AACACCGCTAAAAGCGGCAA+CGG + chr5_1:70911101-70911120 Msa0747240:CDS 50.0%
!! AGTGGTGTTACCAGCCAAAC+CGG + chr5_1:70911226-70911245 Msa0747240:CDS 50.0%
! ACCTGTGTTACCGGTTGAAC+CGG - chr5_1:70911327-70911346 None:intergenic 50.0%
GCTATCACCACCTGTGTTAC+CGG - chr5_1:70911336-70911355 None:intergenic 50.0%
AACACAGGTGGTGATAGCAG+TGG + chr5_1:70911338-70911357 Msa0747240:CDS 50.0%
TGAACACTTCCGTGATGCAC+CGG + chr5_1:70911433-70911452 Msa0747240:CDS 50.0%
TTACCTGAACCACCAGTACC+CGG - chr5_1:70911455-70911474 None:intergenic 50.0%
! GTACTGGTGGTTCAGGTAAC+CGG + chr5_1:70911456-70911475 Msa0747240:CDS 50.0%
GGTTCAGGTAACCGGTCAAA+TGG + chr5_1:70911464-70911483 Msa0747240:CDS 50.0%
! GTGGCGGTACTTCATTGGTT+AGG - chr5_1:70911544-70911563 None:intergenic 50.0%
ATGACGTGGCGGTACTTCAT+TGG - chr5_1:70911549-70911568 None:intergenic 50.0%
GAGGACCATAGTACTGTGGT+GGG - chr5_1:70911592-70911611 None:intergenic 50.0%
TGAGGAGGACCATAGTACTG+TGG - chr5_1:70911596-70911615 None:intergenic 50.0%
! TCATTTTGCTGCTGCTCCAC+CGG + chr5_1:70911619-70911638 Msa0747240:CDS 50.0%
TGATGGCTCACGGTAACAAC+CGG - chr5_1:70911641-70911660 None:intergenic 50.0%
ATACAGCGTATCCTAGCAGC+AGG + chr5_1:70911660-70911679 Msa0747240:CDS 50.0%
! GCGTATTGATACGGTTGTGG+AGG - chr5_1:70911710-70911729 None:intergenic 50.0%
! TGCGCGTATTGATACGGTTG+TGG - chr5_1:70911713-70911732 None:intergenic 50.0%
ATGAAATGGAGCCTCAGCCA+AGG + chr5_1:70911750-70911769 Msa0747240:CDS 50.0%
!!! GCTTCCGTTGCCGCTTTTAG+CGG - chr5_1:70911108-70911127 None:intergenic 55.0%
GCTAAAAGCGGCAACGGAAG+CGG + chr5_1:70911107-70911126 Msa0747240:CDS 55.0%
CCGGTTGTGGAACCTTCGTT+GGG - chr5_1:70911152-70911171 None:intergenic 55.0%
CCCAACGAAGGTTCCACAAC+CGG + chr5_1:70911149-70911168 Msa0747240:CDS 55.0%
CCAACGAAGGTTCCACAACC+GGG + chr5_1:70911150-70911169 Msa0747240:CDS 55.0%
GGTTCCACAACCGGGAAAAC+CGG + chr5_1:70911158-70911177 Msa0747240:CDS 55.0%
CTCTTGAACATGCACCACGC+CGG - chr5_1:70911180-70911199 None:intergenic 55.0%
! ACCGGTTCAACCGGTAACAC+AGG + chr5_1:70911323-70911342 Msa0747240:CDS 55.0%
GGTTCAACCGGTAACACAGG+TGG + chr5_1:70911326-70911345 Msa0747240:CDS 55.0%
GAACACTTCCGTGATGCACC+GGG + chr5_1:70911434-70911453 Msa0747240:CDS 55.0%
GGAGGACCATAGTACTGTGG+TGG - chr5_1:70911593-70911612 None:intergenic 55.0%
GGTTCATACGTGTACGGCCT+TGG - chr5_1:70911770-70911789 None:intergenic 55.0%
!!! GCTTCCGTTGCCGCTTTTAG+CGG - chr5_1:70911108-70911127 None:intergenic 55.0%
GCTAAAAGCGGCAACGGAAG+CGG + chr5_1:70911107-70911126 Msa0747240:CDS 55.0%
CCGGTTGTGGAACCTTCGTT+GGG - chr5_1:70911152-70911171 None:intergenic 55.0%
CCCAACGAAGGTTCCACAAC+CGG + chr5_1:70911149-70911168 Msa0747240:CDS 55.0%
CCAACGAAGGTTCCACAACC+GGG + chr5_1:70911150-70911169 Msa0747240:CDS 55.0%
GGTTCCACAACCGGGAAAAC+CGG + chr5_1:70911158-70911177 Msa0747240:CDS 55.0%
CTCTTGAACATGCACCACGC+CGG - chr5_1:70911180-70911199 None:intergenic 55.0%
! ACCGGTTCAACCGGTAACAC+AGG + chr5_1:70911323-70911342 Msa0747240:CDS 55.0%
GGTTCAACCGGTAACACAGG+TGG + chr5_1:70911326-70911345 Msa0747240:CDS 55.0%
GAACACTTCCGTGATGCACC+GGG + chr5_1:70911434-70911453 Msa0747240:CDS 55.0%
GGAGGACCATAGTACTGTGG+TGG - chr5_1:70911593-70911612 None:intergenic 55.0%
GGTTCATACGTGTACGGCCT+TGG - chr5_1:70911770-70911789 None:intergenic 55.0%
CTTGCAGCCTGCGCAGTGAA+TGG - chr5_1:70910590-70910609 None:intergenic 60.0%
CCCGGTTGTGGAACCTTCGT+TGG - chr5_1:70911153-70911172 None:intergenic 60.0%
!!! ATGCACCACGCCGGTTTTCC+CGG - chr5_1:70911171-70911190 None:intergenic 60.0%
!! TTCTCGGCTACCGGTTTGGC+TGG - chr5_1:70911239-70911258 None:intergenic 60.0%
TTCCGTGATGCACCGGGTAC+TGG + chr5_1:70911440-70911459 Msa0747240:CDS 60.0%
CACCAGTACCCGGTGCATCA+CGG - chr5_1:70911445-70911464 None:intergenic 60.0%
TGGCTCACGGTAACAACCGG+TGG - chr5_1:70911638-70911657 None:intergenic 60.0%
GCACCGTAACTCCTGCTGCT+AGG - chr5_1:70911674-70911693 None:intergenic 60.0%
TACGTGTACGGCCTTGGCTG+AGG - chr5_1:70911764-70911783 None:intergenic 60.0%
CTTGCAGCCTGCGCAGTGAA+TGG - chr5_1:70910590-70910609 None:intergenic 60.0%
CCCGGTTGTGGAACCTTCGT+TGG - chr5_1:70911153-70911172 None:intergenic 60.0%
!!! ATGCACCACGCCGGTTTTCC+CGG - chr5_1:70911171-70911190 None:intergenic 60.0%
!! TTCTCGGCTACCGGTTTGGC+TGG - chr5_1:70911239-70911258 None:intergenic 60.0%
TTCCGTGATGCACCGGGTAC+TGG + chr5_1:70911440-70911459 Msa0747240:CDS 60.0%
CACCAGTACCCGGTGCATCA+CGG - chr5_1:70911445-70911464 None:intergenic 60.0%
TGGCTCACGGTAACAACCGG+TGG - chr5_1:70911638-70911657 None:intergenic 60.0%
GCACCGTAACTCCTGCTGCT+AGG - chr5_1:70911674-70911693 None:intergenic 60.0%
TACGTGTACGGCCTTGGCTG+AGG - chr5_1:70911764-70911783 None:intergenic 60.0%
!!! CACGCCGGTTTTCCCGGTTG+TGG - chr5_1:70911165-70911184 None:intergenic 65.0%
CACAACCGGGAAAACCGGCG+TGG + chr5_1:70911163-70911182 Msa0747240:CDS 65.0%
!! CGTGATGCACCGGGTACTGG+TGG + chr5_1:70911443-70911462 Msa0747240:CDS 65.0%
!! GCACCGGGTACTGGTGGTTC+AGG + chr5_1:70911449-70911468 Msa0747240:CDS 65.0%
!!! CACGCCGGTTTTCCCGGTTG+TGG - chr5_1:70911165-70911184 None:intergenic 65.0%
CACAACCGGGAAAACCGGCG+TGG + chr5_1:70911163-70911182 Msa0747240:CDS 65.0%
!! CGTGATGCACCGGGTACTGG+TGG + chr5_1:70911443-70911462 Msa0747240:CDS 65.0%
!! GCACCGGGTACTGGTGGTTC+AGG + chr5_1:70911449-70911468 Msa0747240:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 70910282 70912147 70910282 ID=Msa0747240;Name=Msa0747240
chr5_1 mRNA 70910282 70912147 70910282 ID=Msa0747240-mRNA-1;Parent=Msa0747240;Name=Msa0747240-mRNA-1;_AED=0.04;_eAED=0.04;_QI=112|1|1|1|1|1|3|276|399
chr5_1 exon 70910282 70910447 70910282 ID=Msa0747240-mRNA-1:exon:20934;Parent=Msa0747240-mRNA-1
chr5_1 exon 70910568 70910643 70910568 ID=Msa0747240-mRNA-1:exon:20935;Parent=Msa0747240-mRNA-1
chr5_1 exon 70910802 70912147 70910802 ID=Msa0747240-mRNA-1:exon:20936;Parent=Msa0747240-mRNA-1
chr5_1 five_prime_UTR 70910282 70910393 70910282 ID=Msa0747240-mRNA-1:five_prime_utr;Parent=Msa0747240-mRNA-1
chr5_1 CDS 70910394 70910447 70910394 ID=Msa0747240-mRNA-1:cds;Parent=Msa0747240-mRNA-1
chr5_1 CDS 70910568 70910643 70910568 ID=Msa0747240-mRNA-1:cds;Parent=Msa0747240-mRNA-1
chr5_1 CDS 70910802 70911871 70910802 ID=Msa0747240-mRNA-1:cds;Parent=Msa0747240-mRNA-1
chr5_1 three_prime_UTR 70911872 70912147 70911872 ID=Msa0747240-mRNA-1:three_prime_utr;Parent=Msa0747240-mRNA-1
Gene Sequence

>Msa0747240

ATGGCCGCATCAGAGACACAAGCTGAACAACATTCACAACATCTCAACTACAAGACAACTGTTTTGAAAGTCTCCATTCACTGCGCAGGCTGCAAGAGAAAAGTACACAAAATTCTTCAAAACATACAAGGTGTTCAAAACATAGACATTGATTTGAAGCAACAAAAAGTAATAGTAACGGGGAACGTGAACAGTGATATATTGATCCACAAACTGACCAACAAGACAGGGAAGCATGTTGAGCTTTGGCCTGAACCAACAGAATCAAAAAAGAAGAAGCAACCAAAACCAGAGAAGAACAAAGAGAAACGGAGCGACTCAGAAACTGAAAACAGTGAAGAAATAGAAATCAAACAAAACAGTGAAAACAACAACAACGGAACAGGTAAAGTTGACACATCCACATCCAAGAACGTTGAAGTTAACGGCAACACCGCTAAAAGCGGCAACGGAAGCGGTGACAGTAAAGTTAACAAACCCAACGAAGGTTCCACAACCGGGAAAACCGGCGTGGTGCATGTTCAAGAGCTAAAGCCAGAGGTGAGAAAGCAAACAGTGGTGTTACCAGCCAAACCGGTAGCCGAGAAAAAAGTTAGCGTCGCAGTTCAATTTCCTAACGATGATAATGAAGAACCATTGACGAATGAGAAAACCGGTTCAACCGGTAACACAGGTGGTGATAGCAGTGGAGTGAAAAAGAAGAAAAAGAAAGGGAAAGGTAAAGTTGTTAACAACAATGTTGAAGAAAGTGCTGTTAATGTTGAACACTTCCGTGATGCACCGGGTACTGGTGGTTCAGGTAACCGGTCAAATGGTCAATTTCAAGGTCAAAGTAGTAATTTTCATGGGCAAGTACATTCAGGTTCAAACCTAACCAATGAAGTACCGCCACGTCATTACATTAACGAACAATTTCACCCACCACAGTACTATGGTCCTCCTCAATCTCATTTTGCTGCTGCTCCACCGGTTGTTACCGTGAGCCATCATACAGCGTATCCTAGCAGCAGGAGTTACGGTGCAGCGTATTATGCGCCTCCACAACCGTATCAATACGCGCATGTGATGAATACGGGAAATGAAATGGAGCCTCAGCCAAGGCCGTACACGTATGAACCAGAATTGTATAATTCATCACAACCGTCAGATTCTTTTGTTTATTTTAGTGATGAAAATCCTAATGCGTGTAATGTCATGTGA
Protein sequence

>Msa0747240

MAASETQAEQHSQHLNYKTTVLKVSIHCAGCKRKVHKILQNIQGVQNIDIDLKQQKVIVTGNVNSDILIHKLTNKTGKHVELWPEPTESKKKKQPKPEKNKEKRSDSETENSEEIEIKQNSENNNNGTGKVDTSTSKNVEVNGNTAKSGNGSGDSKVNKPNEGSTTGKTGVVHVQELKPEVRKQTVVLPAKPVAEKKVSVAVQFPNDDNEEPLTNEKTGSTGNTGGDSSGVKKKKKKGKGKVVNNNVEESAVNVEHFRDAPGTGGSGNRSNGQFQGQSSNFHGQVHSGSNLTNEVPPRHYINEQFHPPQYYGPPQSHFAAAPPVVTVSHHTAYPSSRSYGAAYYAPPQPYQYAHVMNTGNEMEPQPRPYTYEPELYNSSQPSDSFVYFSDENPNACNVM*