AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0172760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172760 MtrunA17_Chr1g0192131 84.058 414 37 9 1 397 1 402 0.0 557
Msa0172760 MtrunA17_Chr7g0272571 35.000 400 173 16 18 397 33 365 6.84e-34 129
Msa0172760 MtrunA17_Chr7g0269081 43.284 134 64 3 1 130 1 126 1.57e-19 88.6
Msa0172760 MtrunA17_Chr1g0208301 52.000 75 35 1 9 83 4 77 1.48e-17 83.6
Msa0172760 MtrunA17_Chr2g0287751 56.944 72 30 1 15 86 7 77 1.53e-17 84.3
Msa0172760 MtrunA17_Chr4g0065651 54.054 74 33 1 13 86 5 77 8.08e-17 82.0
Msa0172760 MtrunA17_Chr0c22g0493881 54.054 74 33 1 13 86 5 77 1.13e-16 80.9
Msa0172760 MtrunA17_Chr4g0065621 54.054 74 33 1 13 86 5 77 7.81e-16 78.6
Msa0172760 MtrunA17_Chr2g0287741 59.155 71 28 1 18 88 15 84 1.11e-15 79.0
Msa0172760 MtrunA17_Chr7g0218981 39.535 86 47 2 15 96 1 85 1.76e-15 72.8
Msa0172760 MtrunA17_Chr1g0191671 49.275 69 34 1 15 83 7 74 4.66e-15 77.0
Msa0172760 MtrunA17_Chr2g0296001 48.235 85 43 1 1 85 56 139 1.12e-14 74.7
Msa0172760 MtrunA17_Chr4g0036931 41.176 68 40 0 17 84 27 94 9.03e-14 68.6
Msa0172760 MtrunA17_Chr3g0111541 51.471 68 32 1 15 82 9 75 2.96e-13 68.6
Msa0172760 MtrunA17_Chr1g0198341 41.250 80 46 1 15 94 1 79 3.50e-13 64.7
Msa0172760 MtrunA17_Chr8g0382721 48.485 66 33 1 19 84 30 94 1.23e-12 65.5
Msa0172760 MtrunA17_Chr3g0145621 36.486 74 47 0 11 84 19 92 2.03e-12 64.7
Msa0172760 MtrunA17_Chr3g0115421 46.032 63 33 1 22 84 30 91 7.77e-12 62.8
Msa0172760 MtrunA17_Chr2g0285561 38.182 110 63 4 19 125 9 116 1.13e-11 65.1
Msa0172760 MtrunA17_Chr3g0124411 44.776 67 36 1 18 84 30 95 3.56e-11 61.2
Msa0172760 MtrunA17_Chr1g0160201 37.500 72 44 1 13 84 20 90 5.51e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172760 AT5G27690.1 50.495 101 45 2 9 105 21 120 3.13e-22 97.4
Msa0172760 AT1G56210.1 30.051 396 192 16 17 397 39 364 3.28e-20 91.7
Msa0172760 AT3G06130.2 52.703 74 34 1 13 86 5 77 8.44e-17 81.6
Msa0172760 AT3G06130.1 52.703 74 34 1 13 86 5 77 1.32e-16 81.6
Msa0172760 AT5G19090.2 52.703 74 34 1 13 86 5 77 1.99e-16 81.3
Msa0172760 AT5G19090.3 52.703 74 34 1 13 86 5 77 1.99e-16 81.3
Msa0172760 AT5G19090.5 52.703 74 34 1 13 86 5 77 2.57e-16 81.3
Msa0172760 AT5G19090.4 52.703 74 34 1 13 86 5 77 2.57e-16 81.3
Msa0172760 AT5G19090.1 52.703 74 34 1 13 86 5 77 2.57e-16 81.3
Msa0172760 AT1G23000.1 48.750 80 39 2 15 93 10 88 2.96e-16 80.1
Msa0172760 AT1G23000.2 48.750 80 39 2 15 93 70 148 9.04e-16 79.0
Msa0172760 AT5G37860.1 54.545 66 29 1 18 83 10 74 4.88e-15 75.1
Msa0172760 AT3G56240.3 36.449 107 65 2 18 122 3 108 4.83e-14 68.9
Msa0172760 AT3G56240.1 36.449 107 65 2 18 122 3 108 4.83e-14 68.9
Msa0172760 AT3G05220.1 47.826 69 35 1 15 83 7 74 1.76e-13 72.4
Msa0172760 AT1G66240.1 40.541 74 43 1 18 91 33 105 1.98e-12 63.9
Msa0172760 AT5G66110.3 32.941 85 56 1 1 84 1 85 2.47e-12 64.7
Msa0172760 AT5G66110.1 32.941 85 56 1 1 84 1 85 2.47e-12 64.7
Msa0172760 AT5G66110.2 38.983 59 36 0 26 84 1 59 3.03e-11 60.8
Msa0172760 AT3G56240.2 34.343 99 62 2 26 122 1 98 3.59e-11 60.5
Msa0172760 AT4G38580.1 37.313 67 42 0 18 84 26 92 4.14e-11 61.2
Msa0172760 AT4G38580.2 37.313 67 42 0 18 84 26 92 4.14e-11 61.2
Msa0172760 AT4G35060.1 34.722 72 47 0 13 84 20 91 4.30e-11 61.2
Msa0172760 AT4G08570.1 41.176 68 38 2 18 84 26 92 9.37e-11 60.1

Find 109 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGTTCTTCTGGGTCTTTC+TGG 0.102017 1_4:+57941940 Msa0172760:three_prime_UTR
TCTTTGTTCTTCTCTGGTTT+TGG 0.218419 1_4:-57940852 None:intergenic
TGTGATGAATTATACGATTC+TGG 0.253530 1_4:-57941680 None:intergenic
GTAGAATAATAGAGTTCTTC+TGG 0.254935 1_4:+57941930 Msa0172760:three_prime_UTR
ACTACTTTGTTTGCTTTGAA+TGG 0.305307 1_4:+57941896 Msa0172760:three_prime_UTR
TGAAATACATACAACTTGTA+TGG 0.308571 1_4:+57941793 Msa0172760:three_prime_UTR
GCCGTTAACTTGAACGTTCT+TGG 0.324864 1_4:-57940976 None:intergenic
TGTTTCTCTTTGTTCTTCTC+TGG 0.327013 1_4:-57940858 None:intergenic
AACATGCTTCCCTGTCTTGT+TGG 0.331354 1_4:-57940787 None:intergenic
GGTTCATACGTGTACGGCCT+TGG 0.369283 1_4:-57941659 None:intergenic
CTGTCTTGTTGGTCAGTTTG+TGG 0.373603 1_4:-57940776 None:intergenic
TTTCATGGGCAAGTACATTC+AGG 0.376558 1_4:+57941404 Msa0172760:CDS
GCACCGGGTACTGGTGGTTC+AGG 0.381070 1_4:+57941341 Msa0172760:CDS
CCCGGTTGCGGAACCTTCGT+TGG 0.381271 1_4:-57941048 None:intergenic
CCCAACGAAGGTTCCGCAAC+CGG 0.388912 1_4:+57941047 Msa0172760:CDS
ACTGTTTGCTTTCTCACCTC+TGG 0.389171 1_4:-57941104 None:intergenic
TCCAAGAACGTTCAAGTTAA+CGG 0.392742 1_4:+57940975 Msa0172760:CDS
GCTATCACCACCAGTGTTAC+CGG 0.393369 1_4:-57941225 None:intergenic
CTTTGTTTGCTTTGAATGGA+TGG 0.405181 1_4:+57941900 Msa0172760:three_prime_UTR
ACCAGTGTTACCGGTTGAAC+CGG 0.408584 1_4:-57941216 None:intergenic
AAGCATTCCCATCAATTTCA+AGG 0.409870 1_4:+57940198 Msa0172760:five_prime_UTR
TCATGTGATTTGTAATCATT+TGG 0.414052 1_4:+57941756 Msa0172760:exon
TTCTCGGCTACCGGTTTGGC+TGG 0.414295 1_4:-57941134 None:intergenic
GGTTCCGCAACCGGGAAAAC+CGG 0.416223 1_4:+57941056 Msa0172760:CDS
CTTCACTTCAAACTTTCAAA+TGG 0.418439 1_4:+57940273 Msa0172760:exon
CAGGGAAGCATGTTGAGCTT+TGG 0.426685 1_4:+57940796 Msa0172760:CDS
ATGACGTGGCGGTACTTCAT+TGG 0.427491 1_4:-57941438 None:intergenic
TTCCGTGATGCACCGGGTAC+TGG 0.429866 1_4:+57941332 Msa0172760:CDS
CTTGCAGCCTGCGCAGTGAA+TGG 0.433758 1_4:-57940485 None:intergenic
TTTCACCCACCGCAGTACTA+TGG 0.437794 1_4:+57941476 Msa0172760:CDS
GTGGCGGTACTTCATTGGTT+AGG 0.440696 1_4:-57941433 None:intergenic
AGTTTGAAGTGAAGGAGAAA+AGG 0.440825 1_4:-57940264 None:intergenic
TTTGAGAAAACCGGTTCAAC+CGG 0.444090 1_4:+57941206 Msa0172760:CDS
AAAGCGTACCTTGAAATTGA+TGG 0.444168 1_4:-57940206 None:intergenic
CCGGTTGCGGAACCTTCGTT+GGG 0.448407 1_4:-57941047 None:intergenic
GTACTGGTGGTTCAGGTAAC+CGG 0.450368 1_4:+57941348 Msa0172760:CDS
GGTTCTTCATTATCATCGTT+AGG 0.452727 1_4:-57941182 None:intergenic
CGGTCAAATGGTCAATTTCA+AGG 0.454759 1_4:+57941368 Msa0172760:CDS
CAAAAGCTTCAAAAGGAAGT+TGG 0.457861 1_4:+57941857 Msa0172760:three_prime_UTR
GATGAATACGGGAAACGAAA+TGG 0.464553 1_4:+57941628 Msa0172760:CDS
ATACAACTTGTATGGGGCAT+GGG 0.471048 1_4:+57941801 Msa0172760:three_prime_UTR
TGATGGCTCACGGTAACAAC+CGG 0.471619 1_4:-57941530 None:intergenic
TAGAATAATAGAGTTCTTCT+GGG 0.474816 1_4:+57941931 Msa0172760:three_prime_UTR
GAAATACATACAACTTGTAT+GGG 0.475009 1_4:+57941794 Msa0172760:three_prime_UTR
AACTTGAACGTTCTTGGATG+TGG 0.475224 1_4:-57940970 None:intergenic
CACATGACATTACACGCATT+AGG 0.475926 1_4:-57941740 None:intergenic
ATCACATGCGCGTATTGATA+CGG 0.476164 1_4:-57941608 None:intergenic
GAAGAACCATTTGAGAAAAC+CGG 0.477484 1_4:+57941197 Msa0172760:CDS
CACAAACTGACCAACAAGAC+AGG 0.483302 1_4:+57940777 Msa0172760:CDS
GAAAACAACAACAACGGAAC+AGG 0.484637 1_4:+57940933 Msa0172760:CDS
ATCAGAGCAAAAGCTTCAAA+AGG 0.490471 1_4:+57941850 Msa0172760:three_prime_UTR
TACGTGTACGGCCTTGGCTG+AGG 0.491015 1_4:-57941653 None:intergenic
CTTGAAATTGACCATTTGAC+CGG 0.491863 1_4:-57941367 None:intergenic
AAAGTCTCCATTCACTGCGC+AGG 0.492565 1_4:+57940478 Msa0172760:CDS
AGTGGTGTTACCAGCCAAAC+CGG 0.494179 1_4:+57941124 Msa0172760:CDS
GGTTCAGGTAACCGGTCAAA+TGG 0.494989 1_4:+57941356 Msa0172760:CDS
GCTTTGAATGGATGGGAAGT+TGG 0.505773 1_4:+57941908 Msa0172760:three_prime_UTR
TGAACACTTCCGTGATGCAC+CGG 0.507152 1_4:+57941325 Msa0172760:CDS
GTGATTTGTAATCATTTGGT+TGG 0.509685 1_4:+57941760 Msa0172760:exon
CATTTGAAAGTTTGAAGTGA+AGG 0.514068 1_4:-57940272 None:intergenic
TACAACTTGTATGGGGCATG+GGG 0.520413 1_4:+57941802 Msa0172760:three_prime_UTR
TTTGTTTGCTTTGAATGGAT+GGG 0.520807 1_4:+57941901 Msa0172760:three_prime_UTR
TATCCTAGCAGCAGTAGTTA+CGG 0.527016 1_4:+57941560 Msa0172760:CDS
GCTAAAAGCGGCAACGGAAG+CGG 0.527918 1_4:+57941005 Msa0172760:CDS
ATACGCGCATGTGATGAATA+CGG 0.539599 1_4:+57941616 Msa0172760:CDS
ACCGGTTCAACCGGTAACAC+TGG 0.546173 1_4:+57941215 Msa0172760:CDS
GCAGCAGCAAAATGAGATTG+AGG 0.556418 1_4:-57941503 None:intergenic
AAGCGTACCTTGAAATTGAT+GGG 0.557869 1_4:-57940205 None:intergenic
TACGCGCATGTGATGAATAC+GGG 0.564097 1_4:+57941617 Msa0172760:CDS
TGCGCGTATTGATACGGTTG+TGG 0.564403 1_4:-57941602 None:intergenic
CATACAACTTGTATGGGGCA+TGG 0.568161 1_4:+57941800 Msa0172760:three_prime_UTR
CCAACGAAGGTTCCGCAACC+GGG 0.574607 1_4:+57941048 Msa0172760:CDS
GAACACTTCCGTGATGCACC+GGG 0.582325 1_4:+57941326 Msa0172760:CDS
GCACCGTAACTACTGCTGCT+AGG 0.585225 1_4:-57941563 None:intergenic
TGCTAGGATACGCTGTATGA+TGG 0.586279 1_4:-57941547 None:intergenic
AACACCGCTAAAAGCGGCAA+CGG 0.586332 1_4:+57940999 Msa0172760:CDS
TTACCTGAACCACCAGTACC+CGG 0.601937 1_4:-57941344 None:intergenic
CACCAGTACCCGGTGCATCA+CGG 0.602569 1_4:-57941334 None:intergenic
CGTGATGCACCGGGTACTGG+TGG 0.603532 1_4:+57941335 Msa0172760:CDS
TTCACAACATCTCAACTACA+AGG 0.605083 1_4:+57940324 Msa0172760:CDS
ACGAAATGGAGCCTCAGCCA+AGG 0.607085 1_4:+57941642 Msa0172760:CDS
TCTGTGATATATATCATACT+AGG 0.614528 1_4:+57941988 Msa0172760:three_prime_UTR
AACGGCAACACCGCTAAAAG+CGG 0.614579 1_4:+57940993 Msa0172760:CDS
AACAGTGAAAACAACAACAA+CGG 0.621781 1_4:+57940927 Msa0172760:CDS
GGAGGACCATAGTACTGCGG+TGG 0.622560 1_4:-57941482 None:intergenic
TTCAGCTTGTGTCTCTGATG+CGG 0.631924 1_4:-57940296 None:intergenic
AAAATTCTTCAAAACATACA+AGG 0.632084 1_4:+57940520 Msa0172760:CDS
ACAAACTGACCAACAAGACA+GGG 0.636532 1_4:+57940778 Msa0172760:CDS
GATTCTGGTTCATACGTGTA+CGG 0.638610 1_4:-57941665 None:intergenic
AAATAAACAAAAGAATCTGA+CGG 0.643148 1_4:-57941704 None:intergenic
ATACGCTGTATGATGGCTCA+CGG 0.643410 1_4:-57941540 None:intergenic
AACACTGGTGGTGATAGCAG+TGG 0.644515 1_4:+57941230 Msa0172760:CDS
GAGGACCATAGTACTGCGGT+GGG 0.654907 1_4:-57941481 None:intergenic
TGGCTCACGGTAACAACCGG+TGG 0.659488 1_4:-57941527 None:intergenic
AAATACATACAACTTGTATG+GGG 0.662949 1_4:+57941795 Msa0172760:three_prime_UTR
ACAACTTGTATGGGGCATGG+GGG 0.663201 1_4:+57941803 Msa0172760:three_prime_UTR
TGATATATATCACAGAGGCA+AGG 0.664277 1_4:-57941981 None:intergenic
GCGTATTGATACGGTTGTGG+AGG 0.666718 1_4:-57941599 None:intergenic
GGTTCAACCGGTAACACTGG+TGG 0.667820 1_4:+57941218 Msa0172760:CDS
CTCTTGAACATGTACCACGC+CGG 0.671118 1_4:-57941075 None:intergenic
GCAGCAAAATGAGATTGAGG+AGG 0.681939 1_4:-57941500 None:intergenic
CGCAACCGGGAAAACCGGCG+TGG 0.690224 1_4:+57941061 Msa0172760:CDS
AGAGGTGAGAAAGCAAACAG+TGG 0.698353 1_4:+57941106 Msa0172760:CDS
AAAGTTAACAAACCCAACGA+AGG 0.699189 1_4:+57941035 Msa0172760:CDS
TGTTCAAGAGCTAAAGCCAG+AGG 0.702356 1_4:+57941088 Msa0172760:CDS
TGTTCGTTAATGTAATGACG+TGG 0.709464 1_4:-57941452 None:intergenic
TCGTTAATGTAATGACGTGG+CGG 0.723759 1_4:-57941449 None:intergenic
TGAGGAGGACCATAGTACTG+CGG 0.754897 1_4:-57941485 None:intergenic
TAGTATGATATATATCACAG+AGG 0.783780 1_4:-57941986 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAAAGTAAAAAATAA+AGG - chr1_4:57940579-57940598 None:intergenic 10.0%
!! AAAATGAAAGTAAAAAATAA+AGG - chr1_4:57940579-57940598 None:intergenic 10.0%
!! AAAATTCTTCAAAACATACA+AGG + chr1_4:57940520-57940539 Msa0172760:CDS 20.0%
!! CAAAGAATGAATACTAAAAA+TGG - chr1_4:57940621-57940640 None:intergenic 20.0%
!!! TTTTAGTATTCATTCTTTGA+AGG + chr1_4:57940622-57940641 Msa0172760:intron 20.0%
!! TTTAGTATTCATTCTTTGAA+GGG + chr1_4:57940623-57940642 Msa0172760:intron 20.0%
!!! TTTATACTTTTCTGTAATCT+AGG + chr1_4:57940678-57940697 Msa0172760:intron 20.0%
!! TGAAAAAGAAGAAAAAGAAA+GGG + chr1_4:57941255-57941274 Msa0172760:CDS 20.0%
!! AAATAAACAAAAGAATCTGA+CGG - chr1_4:57941707-57941726 None:intergenic 20.0%
!! AAAATTCTTCAAAACATACA+AGG + chr1_4:57940520-57940539 Msa0172760:CDS 20.0%
!! CAAAGAATGAATACTAAAAA+TGG - chr1_4:57940621-57940640 None:intergenic 20.0%
!!! TTTTAGTATTCATTCTTTGA+AGG + chr1_4:57940622-57940641 Msa0172760:intron 20.0%
!! TTTAGTATTCATTCTTTGAA+GGG + chr1_4:57940623-57940642 Msa0172760:intron 20.0%
!!! TTTATACTTTTCTGTAATCT+AGG + chr1_4:57940678-57940697 Msa0172760:intron 20.0%
!! TGAAAAAGAAGAAAAAGAAA+GGG + chr1_4:57941255-57941274 Msa0172760:CDS 20.0%
!! AAATAAACAAAAGAATCTGA+CGG - chr1_4:57941707-57941726 None:intergenic 20.0%
! AATGAAATGAAAGTAAGAGA+TGG - chr1_4:57940363-57940382 None:intergenic 25.0%
! GCAACAAAAAGTAATAGTAA+CGG + chr1_4:57940728-57940747 Msa0172760:CDS 25.0%
! CAACAAAAAGTAATAGTAAC+GGG + chr1_4:57940729-57940748 Msa0172760:CDS 25.0%
! AACAAAAAGTAATAGTAACG+GGG + chr1_4:57940730-57940749 Msa0172760:CDS 25.0%
!!! TTCTTCTTTTTTGATTCTGT+TGG - chr1_4:57940828-57940847 None:intergenic 25.0%
! GTGAAAAAGAAGAAAAAGAA+AGG + chr1_4:57941254-57941273 Msa0172760:CDS 25.0%
!! GTCAAAGTAGTAATTTTCAT+GGG + chr1_4:57941390-57941409 Msa0172760:CDS 25.0%
!! TCATGTGATTTGTAATCATT+TGG + chr1_4:57941756-57941775 Msa0172760:exon 25.0%
! TGAAATACATACAACTTGTA+TGG + chr1_4:57941793-57941812 Msa0172760:three_prime_UTR 25.0%
! GAAATACATACAACTTGTAT+GGG + chr1_4:57941794-57941813 Msa0172760:three_prime_UTR 25.0%
! AAATACATACAACTTGTATG+GGG + chr1_4:57941795-57941814 Msa0172760:three_prime_UTR 25.0%
! TAGAATAATAGAGTTCTTCT+GGG + chr1_4:57941931-57941950 Msa0172760:three_prime_UTR 25.0%
! TAGTATGATATATATCACAG+AGG - chr1_4:57941989-57942008 None:intergenic 25.0%
! TCTGTGATATATATCATACT+AGG + chr1_4:57941988-57942007 Msa0172760:three_prime_UTR 25.0%
! AATGAAATGAAAGTAAGAGA+TGG - chr1_4:57940363-57940382 None:intergenic 25.0%
! GCAACAAAAAGTAATAGTAA+CGG + chr1_4:57940728-57940747 Msa0172760:CDS 25.0%
! CAACAAAAAGTAATAGTAAC+GGG + chr1_4:57940729-57940748 Msa0172760:CDS 25.0%
! AACAAAAAGTAATAGTAACG+GGG + chr1_4:57940730-57940749 Msa0172760:CDS 25.0%
!!! TTCTTCTTTTTTGATTCTGT+TGG - chr1_4:57940828-57940847 None:intergenic 25.0%
! GTGAAAAAGAAGAAAAAGAA+AGG + chr1_4:57941254-57941273 Msa0172760:CDS 25.0%
!! GTCAAAGTAGTAATTTTCAT+GGG + chr1_4:57941390-57941409 Msa0172760:CDS 25.0%
!! TCATGTGATTTGTAATCATT+TGG + chr1_4:57941756-57941775 Msa0172760:exon 25.0%
! TGAAATACATACAACTTGTA+TGG + chr1_4:57941793-57941812 Msa0172760:three_prime_UTR 25.0%
! GAAATACATACAACTTGTAT+GGG + chr1_4:57941794-57941813 Msa0172760:three_prime_UTR 25.0%
! AAATACATACAACTTGTATG+GGG + chr1_4:57941795-57941814 Msa0172760:three_prime_UTR 25.0%
! TAGAATAATAGAGTTCTTCT+GGG + chr1_4:57941931-57941950 Msa0172760:three_prime_UTR 25.0%
! TAGTATGATATATATCACAG+AGG - chr1_4:57941989-57942008 None:intergenic 25.0%
! TCTGTGATATATATCATACT+AGG + chr1_4:57941988-57942007 Msa0172760:three_prime_UTR 25.0%
! CATTTGAAAGTTTGAAGTGA+AGG - chr1_4:57940275-57940294 None:intergenic 30.0%
CTTCACTTCAAACTTTCAAA+TGG + chr1_4:57940273-57940292 Msa0172760:exon 30.0%
!!! TTTTTTGATTCTGTTGGTTC+AGG - chr1_4:57940822-57940841 None:intergenic 30.0%
AACAGTGAAAACAACAACAA+CGG + chr1_4:57940927-57940946 Msa0172760:CDS 30.0%
AAGAAGAAAAAGAAAGGGAA+AGG + chr1_4:57941260-57941279 Msa0172760:CDS 30.0%
! GGTCAAAGTAGTAATTTTCA+TGG + chr1_4:57941389-57941408 Msa0172760:CDS 30.0%
TGTGATGAATTATACGATTC+TGG - chr1_4:57941683-57941702 None:intergenic 30.0%
! GTGATTTGTAATCATTTGGT+TGG + chr1_4:57941760-57941779 Msa0172760:exon 30.0%
! ACTACTTTGTTTGCTTTGAA+TGG + chr1_4:57941896-57941915 Msa0172760:three_prime_UTR 30.0%
! TTTGTTTGCTTTGAATGGAT+GGG + chr1_4:57941901-57941920 Msa0172760:three_prime_UTR 30.0%
GTAGAATAATAGAGTTCTTC+TGG + chr1_4:57941930-57941949 Msa0172760:three_prime_UTR 30.0%
! CATTTGAAAGTTTGAAGTGA+AGG - chr1_4:57940275-57940294 None:intergenic 30.0%
CTTCACTTCAAACTTTCAAA+TGG + chr1_4:57940273-57940292 Msa0172760:exon 30.0%
!!! TTTTTTGATTCTGTTGGTTC+AGG - chr1_4:57940822-57940841 None:intergenic 30.0%
AACAGTGAAAACAACAACAA+CGG + chr1_4:57940927-57940946 Msa0172760:CDS 30.0%
AAGAAGAAAAAGAAAGGGAA+AGG + chr1_4:57941260-57941279 Msa0172760:CDS 30.0%
! GGTCAAAGTAGTAATTTTCA+TGG + chr1_4:57941389-57941408 Msa0172760:CDS 30.0%
TGTGATGAATTATACGATTC+TGG - chr1_4:57941683-57941702 None:intergenic 30.0%
! GTGATTTGTAATCATTTGGT+TGG + chr1_4:57941760-57941779 Msa0172760:exon 30.0%
! ACTACTTTGTTTGCTTTGAA+TGG + chr1_4:57941896-57941915 Msa0172760:three_prime_UTR 30.0%
! TTTGTTTGCTTTGAATGGAT+GGG + chr1_4:57941901-57941920 Msa0172760:three_prime_UTR 30.0%
GTAGAATAATAGAGTTCTTC+TGG + chr1_4:57941930-57941949 Msa0172760:three_prime_UTR 30.0%
AAGCATTCCCATCAATTTCA+AGG + chr1_4:57940198-57940217 Msa0172760:five_prime_UTR 35.0%
AAGCGTACCTTGAAATTGAT+GGG - chr1_4:57940208-57940227 None:intergenic 35.0%
AAAGCGTACCTTGAAATTGA+TGG - chr1_4:57940209-57940228 None:intergenic 35.0%
! AGTTTGAAGTGAAGGAGAAA+AGG - chr1_4:57940267-57940286 None:intergenic 35.0%
TTCACAACATCTCAACTACA+AGG + chr1_4:57940324-57940343 Msa0172760:CDS 35.0%
AACAAGATTAGAAGCAGTTG+AGG - chr1_4:57940425-57940444 None:intergenic 35.0%
!! TCTTTGTTCTTCTCTGGTTT+TGG - chr1_4:57940855-57940874 None:intergenic 35.0%
TGTTTCTCTTTGTTCTTCTC+TGG - chr1_4:57940861-57940880 None:intergenic 35.0%
! TCCAAGAACGTTCAAGTTAA+CGG + chr1_4:57940975-57940994 Msa0172760:CDS 35.0%
AAAGTTAACAAACCCAACGA+AGG + chr1_4:57941035-57941054 Msa0172760:CDS 35.0%
GGTTCTTCATTATCATCGTT+AGG - chr1_4:57941185-57941204 None:intergenic 35.0%
GAAGAACCATTTGAGAAAAC+CGG + chr1_4:57941197-57941216 Msa0172760:CDS 35.0%
CTTGAAATTGACCATTTGAC+CGG - chr1_4:57941370-57941389 None:intergenic 35.0%
TGTTCGTTAATGTAATGACG+TGG - chr1_4:57941455-57941474 None:intergenic 35.0%
ATCAGAGCAAAAGCTTCAAA+AGG + chr1_4:57941850-57941869 Msa0172760:three_prime_UTR 35.0%
CAAAAGCTTCAAAAGGAAGT+TGG + chr1_4:57941857-57941876 Msa0172760:three_prime_UTR 35.0%
! CTTTGTTTGCTTTGAATGGA+TGG + chr1_4:57941900-57941919 Msa0172760:three_prime_UTR 35.0%
TGATATATATCACAGAGGCA+AGG - chr1_4:57941984-57942003 None:intergenic 35.0%
AAGCATTCCCATCAATTTCA+AGG + chr1_4:57940198-57940217 Msa0172760:five_prime_UTR 35.0%
AAGCGTACCTTGAAATTGAT+GGG - chr1_4:57940208-57940227 None:intergenic 35.0%
AAAGCGTACCTTGAAATTGA+TGG - chr1_4:57940209-57940228 None:intergenic 35.0%
! AGTTTGAAGTGAAGGAGAAA+AGG - chr1_4:57940267-57940286 None:intergenic 35.0%
TTCACAACATCTCAACTACA+AGG + chr1_4:57940324-57940343 Msa0172760:CDS 35.0%
AACAAGATTAGAAGCAGTTG+AGG - chr1_4:57940425-57940444 None:intergenic 35.0%
!! TCTTTGTTCTTCTCTGGTTT+TGG - chr1_4:57940855-57940874 None:intergenic 35.0%
TGTTTCTCTTTGTTCTTCTC+TGG - chr1_4:57940861-57940880 None:intergenic 35.0%
! TCCAAGAACGTTCAAGTTAA+CGG + chr1_4:57940975-57940994 Msa0172760:CDS 35.0%
AAAGTTAACAAACCCAACGA+AGG + chr1_4:57941035-57941054 Msa0172760:CDS 35.0%
GGTTCTTCATTATCATCGTT+AGG - chr1_4:57941185-57941204 None:intergenic 35.0%
GAAGAACCATTTGAGAAAAC+CGG + chr1_4:57941197-57941216 Msa0172760:CDS 35.0%
CTTGAAATTGACCATTTGAC+CGG - chr1_4:57941370-57941389 None:intergenic 35.0%
TGTTCGTTAATGTAATGACG+TGG - chr1_4:57941455-57941474 None:intergenic 35.0%
ATCAGAGCAAAAGCTTCAAA+AGG + chr1_4:57941850-57941869 Msa0172760:three_prime_UTR 35.0%
CAAAAGCTTCAAAAGGAAGT+TGG + chr1_4:57941857-57941876 Msa0172760:three_prime_UTR 35.0%
! CTTTGTTTGCTTTGAATGGA+TGG + chr1_4:57941900-57941919 Msa0172760:three_prime_UTR 35.0%
TGATATATATCACAGAGGCA+AGG - chr1_4:57941984-57942003 None:intergenic 35.0%
! TACGGAAGAGTACGTTGTTA+GGG - chr1_4:57940394-57940413 None:intergenic 40.0%
GCAGTTGAGGAAGAATAGTA+CGG - chr1_4:57940412-57940431 None:intergenic 40.0%
CAGTTGTCTGAGAGACAAAA+TGG - chr1_4:57940453-57940472 None:intergenic 40.0%
ACAAACTGACCAACAAGACA+GGG + chr1_4:57940778-57940797 Msa0172760:CDS 40.0%
GAAAACAACAACAACGGAAC+AGG + chr1_4:57940933-57940952 Msa0172760:CDS 40.0%
AACTTGAACGTTCTTGGATG+TGG - chr1_4:57940973-57940992 None:intergenic 40.0%
!!! CTAACTTTTTTCTCGGCTAC+CGG - chr1_4:57941146-57941165 None:intergenic 40.0%
!!! TGCGACGCTAACTTTTTTCT+CGG - chr1_4:57941153-57941172 None:intergenic 40.0%
!! GTTGAACCGGTTTTCTCAAA+TGG - chr1_4:57941206-57941225 None:intergenic 40.0%
! TTTGAGAAAACCGGTTCAAC+CGG + chr1_4:57941206-57941225 Msa0172760:CDS 40.0%
CGGTCAAATGGTCAATTTCA+AGG + chr1_4:57941368-57941387 Msa0172760:CDS 40.0%
TTTCATGGGCAAGTACATTC+AGG + chr1_4:57941404-57941423 Msa0172760:CDS 40.0%
TCGTTAATGTAATGACGTGG+CGG - chr1_4:57941452-57941471 None:intergenic 40.0%
TATCCTAGCAGCAGTAGTTA+CGG + chr1_4:57941560-57941579 Msa0172760:CDS 40.0%
! ATCACATGCGCGTATTGATA+CGG - chr1_4:57941611-57941630 None:intergenic 40.0%
ATACGCGCATGTGATGAATA+CGG + chr1_4:57941616-57941635 Msa0172760:CDS 40.0%
GATGAATACGGGAAACGAAA+TGG + chr1_4:57941628-57941647 Msa0172760:CDS 40.0%
!! GATTCTGGTTCATACGTGTA+CGG - chr1_4:57941668-57941687 None:intergenic 40.0%
CACATGACATTACACGCATT+AGG - chr1_4:57941743-57941762 None:intergenic 40.0%
ATACAACTTGTATGGGGCAT+GGG + chr1_4:57941801-57941820 Msa0172760:three_prime_UTR 40.0%
!!! TCTTTCTGGCTTTTGTTCAG+TGG + chr1_4:57941954-57941973 Msa0172760:three_prime_UTR 40.0%
! TACGGAAGAGTACGTTGTTA+GGG - chr1_4:57940394-57940413 None:intergenic 40.0%
GCAGTTGAGGAAGAATAGTA+CGG - chr1_4:57940412-57940431 None:intergenic 40.0%
CAGTTGTCTGAGAGACAAAA+TGG - chr1_4:57940453-57940472 None:intergenic 40.0%
ACAAACTGACCAACAAGACA+GGG + chr1_4:57940778-57940797 Msa0172760:CDS 40.0%
GAAAACAACAACAACGGAAC+AGG + chr1_4:57940933-57940952 Msa0172760:CDS 40.0%
AACTTGAACGTTCTTGGATG+TGG - chr1_4:57940973-57940992 None:intergenic 40.0%
!!! CTAACTTTTTTCTCGGCTAC+CGG - chr1_4:57941146-57941165 None:intergenic 40.0%
!!! TGCGACGCTAACTTTTTTCT+CGG - chr1_4:57941153-57941172 None:intergenic 40.0%
!! GTTGAACCGGTTTTCTCAAA+TGG - chr1_4:57941206-57941225 None:intergenic 40.0%
! TTTGAGAAAACCGGTTCAAC+CGG + chr1_4:57941206-57941225 Msa0172760:CDS 40.0%
CGGTCAAATGGTCAATTTCA+AGG + chr1_4:57941368-57941387 Msa0172760:CDS 40.0%
TTTCATGGGCAAGTACATTC+AGG + chr1_4:57941404-57941423 Msa0172760:CDS 40.0%
TCGTTAATGTAATGACGTGG+CGG - chr1_4:57941452-57941471 None:intergenic 40.0%
TATCCTAGCAGCAGTAGTTA+CGG + chr1_4:57941560-57941579 Msa0172760:CDS 40.0%
! ATCACATGCGCGTATTGATA+CGG - chr1_4:57941611-57941630 None:intergenic 40.0%
ATACGCGCATGTGATGAATA+CGG + chr1_4:57941616-57941635 Msa0172760:CDS 40.0%
GATGAATACGGGAAACGAAA+TGG + chr1_4:57941628-57941647 Msa0172760:CDS 40.0%
!! GATTCTGGTTCATACGTGTA+CGG - chr1_4:57941668-57941687 None:intergenic 40.0%
CACATGACATTACACGCATT+AGG - chr1_4:57941743-57941762 None:intergenic 40.0%
ATACAACTTGTATGGGGCAT+GGG + chr1_4:57941801-57941820 Msa0172760:three_prime_UTR 40.0%
!!! TCTTTCTGGCTTTTGTTCAG+TGG + chr1_4:57941954-57941973 Msa0172760:three_prime_UTR 40.0%
TTCAGCTTGTGTCTCTGATG+CGG - chr1_4:57940299-57940318 None:intergenic 45.0%
! GTACGGAAGAGTACGTTGTT+AGG - chr1_4:57940395-57940414 None:intergenic 45.0%
! CTGTCTTGTTGGTCAGTTTG+TGG - chr1_4:57940779-57940798 None:intergenic 45.0%
CACAAACTGACCAACAAGAC+AGG + chr1_4:57940777-57940796 Msa0172760:CDS 45.0%
AACATGCTTCCCTGTCTTGT+TGG - chr1_4:57940790-57940809 None:intergenic 45.0%
! GCCGTTAACTTGAACGTTCT+TGG - chr1_4:57940979-57940998 None:intergenic 45.0%
TGTTCAAGAGCTAAAGCCAG+AGG + chr1_4:57941088-57941107 Msa0172760:CDS 45.0%
ACTGTTTGCTTTCTCACCTC+TGG - chr1_4:57941107-57941126 None:intergenic 45.0%
AGAGGTGAGAAAGCAAACAG+TGG + chr1_4:57941106-57941125 Msa0172760:CDS 45.0%
!!! TTTTTTCTCGGCTACCGGTT+TGG - chr1_4:57941141-57941160 None:intergenic 45.0%
GCAGCAAAATGAGATTGAGG+AGG - chr1_4:57941503-57941522 None:intergenic 45.0%
GCAGCAGCAAAATGAGATTG+AGG - chr1_4:57941506-57941525 None:intergenic 45.0%
ATACGCTGTATGATGGCTCA+CGG - chr1_4:57941543-57941562 None:intergenic 45.0%
TGCTAGGATACGCTGTATGA+TGG - chr1_4:57941550-57941569 None:intergenic 45.0%
TACGCGCATGTGATGAATAC+GGG + chr1_4:57941617-57941636 Msa0172760:CDS 45.0%
CATACAACTTGTATGGGGCA+TGG + chr1_4:57941800-57941819 Msa0172760:three_prime_UTR 45.0%
TACAACTTGTATGGGGCATG+GGG + chr1_4:57941802-57941821 Msa0172760:three_prime_UTR 45.0%
! GCTTTGAATGGATGGGAAGT+TGG + chr1_4:57941908-57941927 Msa0172760:three_prime_UTR 45.0%
AGAGTTCTTCTGGGTCTTTC+TGG + chr1_4:57941940-57941959 Msa0172760:three_prime_UTR 45.0%
TTCAGCTTGTGTCTCTGATG+CGG - chr1_4:57940299-57940318 None:intergenic 45.0%
! GTACGGAAGAGTACGTTGTT+AGG - chr1_4:57940395-57940414 None:intergenic 45.0%
! CTGTCTTGTTGGTCAGTTTG+TGG - chr1_4:57940779-57940798 None:intergenic 45.0%
CACAAACTGACCAACAAGAC+AGG + chr1_4:57940777-57940796 Msa0172760:CDS 45.0%
AACATGCTTCCCTGTCTTGT+TGG - chr1_4:57940790-57940809 None:intergenic 45.0%
! GCCGTTAACTTGAACGTTCT+TGG - chr1_4:57940979-57940998 None:intergenic 45.0%
TGTTCAAGAGCTAAAGCCAG+AGG + chr1_4:57941088-57941107 Msa0172760:CDS 45.0%
ACTGTTTGCTTTCTCACCTC+TGG - chr1_4:57941107-57941126 None:intergenic 45.0%
AGAGGTGAGAAAGCAAACAG+TGG + chr1_4:57941106-57941125 Msa0172760:CDS 45.0%
!!! TTTTTTCTCGGCTACCGGTT+TGG - chr1_4:57941141-57941160 None:intergenic 45.0%
GCAGCAAAATGAGATTGAGG+AGG - chr1_4:57941503-57941522 None:intergenic 45.0%
GCAGCAGCAAAATGAGATTG+AGG - chr1_4:57941506-57941525 None:intergenic 45.0%
ATACGCTGTATGATGGCTCA+CGG - chr1_4:57941543-57941562 None:intergenic 45.0%
TGCTAGGATACGCTGTATGA+TGG - chr1_4:57941550-57941569 None:intergenic 45.0%
TACGCGCATGTGATGAATAC+GGG + chr1_4:57941617-57941636 Msa0172760:CDS 45.0%
CATACAACTTGTATGGGGCA+TGG + chr1_4:57941800-57941819 Msa0172760:three_prime_UTR 45.0%
TACAACTTGTATGGGGCATG+GGG + chr1_4:57941802-57941821 Msa0172760:three_prime_UTR 45.0%
! GCTTTGAATGGATGGGAAGT+TGG + chr1_4:57941908-57941927 Msa0172760:three_prime_UTR 45.0%
AGAGTTCTTCTGGGTCTTTC+TGG + chr1_4:57941940-57941959 Msa0172760:three_prime_UTR 45.0%
AAAGTCTCCATTCACTGCGC+AGG + chr1_4:57940478-57940497 Msa0172760:CDS 50.0%
! CAGGGAAGCATGTTGAGCTT+TGG + chr1_4:57940796-57940815 Msa0172760:CDS 50.0%
AACGGCAACACCGCTAAAAG+CGG + chr1_4:57940993-57941012 Msa0172760:CDS 50.0%
AACACCGCTAAAAGCGGCAA+CGG + chr1_4:57940999-57941018 Msa0172760:CDS 50.0%
CTCTTGAACATGTACCACGC+CGG - chr1_4:57941078-57941097 None:intergenic 50.0%
!! AGTGGTGTTACCAGCCAAAC+CGG + chr1_4:57941124-57941143 Msa0172760:CDS 50.0%
! ACCAGTGTTACCGGTTGAAC+CGG - chr1_4:57941219-57941238 None:intergenic 50.0%
GCTATCACCACCAGTGTTAC+CGG - chr1_4:57941228-57941247 None:intergenic 50.0%
! AACACTGGTGGTGATAGCAG+TGG + chr1_4:57941230-57941249 Msa0172760:CDS 50.0%
TGAACACTTCCGTGATGCAC+CGG + chr1_4:57941325-57941344 Msa0172760:CDS 50.0%
TTACCTGAACCACCAGTACC+CGG - chr1_4:57941347-57941366 None:intergenic 50.0%
! GTACTGGTGGTTCAGGTAAC+CGG + chr1_4:57941348-57941367 Msa0172760:CDS 50.0%
GGTTCAGGTAACCGGTCAAA+TGG + chr1_4:57941356-57941375 Msa0172760:CDS 50.0%
! GTGGCGGTACTTCATTGGTT+AGG - chr1_4:57941436-57941455 None:intergenic 50.0%
ATGACGTGGCGGTACTTCAT+TGG - chr1_4:57941441-57941460 None:intergenic 50.0%
TTTCACCCACCGCAGTACTA+TGG + chr1_4:57941476-57941495 Msa0172760:CDS 50.0%
TGAGGAGGACCATAGTACTG+CGG - chr1_4:57941488-57941507 None:intergenic 50.0%
! TCATTTTGCTGCTGCTCCAC+CGG + chr1_4:57941511-57941530 Msa0172760:CDS 50.0%
TGATGGCTCACGGTAACAAC+CGG - chr1_4:57941533-57941552 None:intergenic 50.0%
! GCGTATTGATACGGTTGTGG+AGG - chr1_4:57941602-57941621 None:intergenic 50.0%
! TGCGCGTATTGATACGGTTG+TGG - chr1_4:57941605-57941624 None:intergenic 50.0%
ACAACTTGTATGGGGCATGG+GGG + chr1_4:57941803-57941822 Msa0172760:three_prime_UTR 50.0%
AAAGTCTCCATTCACTGCGC+AGG + chr1_4:57940478-57940497 Msa0172760:CDS 50.0%
! CAGGGAAGCATGTTGAGCTT+TGG + chr1_4:57940796-57940815 Msa0172760:CDS 50.0%
AACGGCAACACCGCTAAAAG+CGG + chr1_4:57940993-57941012 Msa0172760:CDS 50.0%
AACACCGCTAAAAGCGGCAA+CGG + chr1_4:57940999-57941018 Msa0172760:CDS 50.0%
CTCTTGAACATGTACCACGC+CGG - chr1_4:57941078-57941097 None:intergenic 50.0%
!! AGTGGTGTTACCAGCCAAAC+CGG + chr1_4:57941124-57941143 Msa0172760:CDS 50.0%
! ACCAGTGTTACCGGTTGAAC+CGG - chr1_4:57941219-57941238 None:intergenic 50.0%
GCTATCACCACCAGTGTTAC+CGG - chr1_4:57941228-57941247 None:intergenic 50.0%
! AACACTGGTGGTGATAGCAG+TGG + chr1_4:57941230-57941249 Msa0172760:CDS 50.0%
TGAACACTTCCGTGATGCAC+CGG + chr1_4:57941325-57941344 Msa0172760:CDS 50.0%
TTACCTGAACCACCAGTACC+CGG - chr1_4:57941347-57941366 None:intergenic 50.0%
! GTACTGGTGGTTCAGGTAAC+CGG + chr1_4:57941348-57941367 Msa0172760:CDS 50.0%
GGTTCAGGTAACCGGTCAAA+TGG + chr1_4:57941356-57941375 Msa0172760:CDS 50.0%
! GTGGCGGTACTTCATTGGTT+AGG - chr1_4:57941436-57941455 None:intergenic 50.0%
ATGACGTGGCGGTACTTCAT+TGG - chr1_4:57941441-57941460 None:intergenic 50.0%
TTTCACCCACCGCAGTACTA+TGG + chr1_4:57941476-57941495 Msa0172760:CDS 50.0%
TGAGGAGGACCATAGTACTG+CGG - chr1_4:57941488-57941507 None:intergenic 50.0%
! TCATTTTGCTGCTGCTCCAC+CGG + chr1_4:57941511-57941530 Msa0172760:CDS 50.0%
TGATGGCTCACGGTAACAAC+CGG - chr1_4:57941533-57941552 None:intergenic 50.0%
! GCGTATTGATACGGTTGTGG+AGG - chr1_4:57941602-57941621 None:intergenic 50.0%
! TGCGCGTATTGATACGGTTG+TGG - chr1_4:57941605-57941624 None:intergenic 50.0%
ACAACTTGTATGGGGCATGG+GGG + chr1_4:57941803-57941822 Msa0172760:three_prime_UTR 50.0%
!!! GCTTCCGTTGCCGCTTTTAG+CGG - chr1_4:57941006-57941025 None:intergenic 55.0%
GCTAAAAGCGGCAACGGAAG+CGG + chr1_4:57941005-57941024 Msa0172760:CDS 55.0%
!!! ATGTACCACGCCGGTTTTCC+CGG - chr1_4:57941069-57941088 None:intergenic 55.0%
! ACCGGTTCAACCGGTAACAC+TGG + chr1_4:57941215-57941234 Msa0172760:CDS 55.0%
GGTTCAACCGGTAACACTGG+TGG + chr1_4:57941218-57941237 Msa0172760:CDS 55.0%
GAACACTTCCGTGATGCACC+GGG + chr1_4:57941326-57941345 Msa0172760:CDS 55.0%
GAGGACCATAGTACTGCGGT+GGG - chr1_4:57941484-57941503 None:intergenic 55.0%
GCACCGTAACTACTGCTGCT+AGG - chr1_4:57941566-57941585 None:intergenic 55.0%
ACGAAATGGAGCCTCAGCCA+AGG + chr1_4:57941642-57941661 Msa0172760:CDS 55.0%
GGTTCATACGTGTACGGCCT+TGG - chr1_4:57941662-57941681 None:intergenic 55.0%
!!! GCTTCCGTTGCCGCTTTTAG+CGG - chr1_4:57941006-57941025 None:intergenic 55.0%
GCTAAAAGCGGCAACGGAAG+CGG + chr1_4:57941005-57941024 Msa0172760:CDS 55.0%
!!! ATGTACCACGCCGGTTTTCC+CGG - chr1_4:57941069-57941088 None:intergenic 55.0%
! ACCGGTTCAACCGGTAACAC+TGG + chr1_4:57941215-57941234 Msa0172760:CDS 55.0%
GGTTCAACCGGTAACACTGG+TGG + chr1_4:57941218-57941237 Msa0172760:CDS 55.0%
GAACACTTCCGTGATGCACC+GGG + chr1_4:57941326-57941345 Msa0172760:CDS 55.0%
GAGGACCATAGTACTGCGGT+GGG - chr1_4:57941484-57941503 None:intergenic 55.0%
GCACCGTAACTACTGCTGCT+AGG - chr1_4:57941566-57941585 None:intergenic 55.0%
ACGAAATGGAGCCTCAGCCA+AGG + chr1_4:57941642-57941661 Msa0172760:CDS 55.0%
GGTTCATACGTGTACGGCCT+TGG - chr1_4:57941662-57941681 None:intergenic 55.0%
CTTGCAGCCTGCGCAGTGAA+TGG - chr1_4:57940488-57940507 None:intergenic 60.0%
CCGGTTGCGGAACCTTCGTT+GGG - chr1_4:57941050-57941069 None:intergenic 60.0%
CCCAACGAAGGTTCCGCAAC+CGG + chr1_4:57941047-57941066 Msa0172760:CDS 60.0%
CCAACGAAGGTTCCGCAACC+GGG + chr1_4:57941048-57941067 Msa0172760:CDS 60.0%
GGTTCCGCAACCGGGAAAAC+CGG + chr1_4:57941056-57941075 Msa0172760:CDS 60.0%
!! TTCTCGGCTACCGGTTTGGC+TGG - chr1_4:57941137-57941156 None:intergenic 60.0%
TTCCGTGATGCACCGGGTAC+TGG + chr1_4:57941332-57941351 Msa0172760:CDS 60.0%
CACCAGTACCCGGTGCATCA+CGG - chr1_4:57941337-57941356 None:intergenic 60.0%
GGAGGACCATAGTACTGCGG+TGG - chr1_4:57941485-57941504 None:intergenic 60.0%
TGGCTCACGGTAACAACCGG+TGG - chr1_4:57941530-57941549 None:intergenic 60.0%
TACGTGTACGGCCTTGGCTG+AGG - chr1_4:57941656-57941675 None:intergenic 60.0%
CTTGCAGCCTGCGCAGTGAA+TGG - chr1_4:57940488-57940507 None:intergenic 60.0%
CCGGTTGCGGAACCTTCGTT+GGG - chr1_4:57941050-57941069 None:intergenic 60.0%
CCCAACGAAGGTTCCGCAAC+CGG + chr1_4:57941047-57941066 Msa0172760:CDS 60.0%
CCAACGAAGGTTCCGCAACC+GGG + chr1_4:57941048-57941067 Msa0172760:CDS 60.0%
GGTTCCGCAACCGGGAAAAC+CGG + chr1_4:57941056-57941075 Msa0172760:CDS 60.0%
!! TTCTCGGCTACCGGTTTGGC+TGG - chr1_4:57941137-57941156 None:intergenic 60.0%
TTCCGTGATGCACCGGGTAC+TGG + chr1_4:57941332-57941351 Msa0172760:CDS 60.0%
CACCAGTACCCGGTGCATCA+CGG - chr1_4:57941337-57941356 None:intergenic 60.0%
GGAGGACCATAGTACTGCGG+TGG - chr1_4:57941485-57941504 None:intergenic 60.0%
TGGCTCACGGTAACAACCGG+TGG - chr1_4:57941530-57941549 None:intergenic 60.0%
TACGTGTACGGCCTTGGCTG+AGG - chr1_4:57941656-57941675 None:intergenic 60.0%
CCCGGTTGCGGAACCTTCGT+TGG - chr1_4:57941051-57941070 None:intergenic 65.0%
!!! CACGCCGGTTTTCCCGGTTG+CGG - chr1_4:57941063-57941082 None:intergenic 65.0%
!! CGTGATGCACCGGGTACTGG+TGG + chr1_4:57941335-57941354 Msa0172760:CDS 65.0%
!! GCACCGGGTACTGGTGGTTC+AGG + chr1_4:57941341-57941360 Msa0172760:CDS 65.0%
CCCGGTTGCGGAACCTTCGT+TGG - chr1_4:57941051-57941070 None:intergenic 65.0%
!!! CACGCCGGTTTTCCCGGTTG+CGG - chr1_4:57941063-57941082 None:intergenic 65.0%
!! CGTGATGCACCGGGTACTGG+TGG + chr1_4:57941335-57941354 Msa0172760:CDS 65.0%
!! GCACCGGGTACTGGTGGTTC+AGG + chr1_4:57941341-57941360 Msa0172760:CDS 65.0%
CGCAACCGGGAAAACCGGCG+TGG + chr1_4:57941061-57941080 Msa0172760:CDS 70.0%
CGCAACCGGGAAAACCGGCG+TGG + chr1_4:57941061-57941080 Msa0172760:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 57940180 57942034 57940180 ID=Msa0172760;Name=Msa0172760
chr1_4 mRNA 57940180 57942034 57940180 ID=Msa0172760-mRNA-1;Parent=Msa0172760;Name=Msa0172760-mRNA-1;_AED=0.04;_eAED=0.04;_QI=112|1|1|1|1|1|3|271|397
chr1_4 exon 57940180 57940345 57940180 ID=Msa0172760-mRNA-1:exon:17779;Parent=Msa0172760-mRNA-1
chr1_4 exon 57940466 57940541 57940466 ID=Msa0172760-mRNA-1:exon:17780;Parent=Msa0172760-mRNA-1
chr1_4 exon 57940700 57942034 57940700 ID=Msa0172760-mRNA-1:exon:17781;Parent=Msa0172760-mRNA-1
chr1_4 five_prime_UTR 57940180 57940291 57940180 ID=Msa0172760-mRNA-1:five_prime_utr;Parent=Msa0172760-mRNA-1
chr1_4 CDS 57940292 57940345 57940292 ID=Msa0172760-mRNA-1:cds;Parent=Msa0172760-mRNA-1
chr1_4 CDS 57940466 57940541 57940466 ID=Msa0172760-mRNA-1:cds;Parent=Msa0172760-mRNA-1
chr1_4 CDS 57940700 57941763 57940700 ID=Msa0172760-mRNA-1:cds;Parent=Msa0172760-mRNA-1
chr1_4 three_prime_UTR 57941764 57942034 57941764 ID=Msa0172760-mRNA-1:three_prime_utr;Parent=Msa0172760-mRNA-1
Gene Sequence

>Msa0172760

ATGGCCGCATCAGAGACACAAGCTGAACAACATTCACAACATCTCAACTACAAGACAACTGTTTTGAAAGTCTCCATTCACTGCGCAGGCTGCAAGAGAAAAGTACACAAAATTCTTCAAAACATACAAGGTGTTCAAAACATAGACATTGATTTGAAGCAACAAAAAGTAATAGTAACGGGGAACGTGAACAGTGATATATTGATCCACAAACTGACCAACAAGACAGGGAAGCATGTTGAGCTTTGGCCTGAACCAACAGAATCAAAAAAGAAGAAGCAACCAAAACCAGAGAAGAACAAAGAGAAACAGAGCGACTCAGAAACTGAAAACAGTGAAGAAATAGAAATCAAACAAAACAGTGAAAACAACAACAACGGAACAGGTAAAGTTGACACATCCACATCCAAGAACGTTCAAGTTAACGGCAACACCGCTAAAAGCGGCAACGGAAGCGGTGACAGTAAAGTTAACAAACCCAACGAAGGTTCCGCAACCGGGAAAACCGGCGTGGTACATGTTCAAGAGCTAAAGCCAGAGGTGAGAAAGCAAACAGTGGTGTTACCAGCCAAACCGGTAGCCGAGAAAAAAGTTAGCGTCGCAGTTCAATTTCCTAACGATGATAATGAAGAACCATTTGAGAAAACCGGTTCAACCGGTAACACTGGTGGTGATAGCAGTGGAGTGAAAAAGAAGAAAAAGAAAGGGAAAGGTAAAGTTGTTAACAACAATGTTGAAGAAAGTGTTGTTAATGTTGAACACTTCCGTGATGCACCGGGTACTGGTGGTTCAGGTAACCGGTCAAATGGTCAATTTCAAGGTCAAAGTAGTAATTTTCATGGGCAAGTACATTCAGGTTCAAACCTAACCAATGAAGTACCGCCACGTCATTACATTAACGAACAATTTCACCCACCGCAGTACTATGGTCCTCCTCAATCTCATTTTGCTGCTGCTCCACCGGTTGTTACCGTGAGCCATCATACAGCGTATCCTAGCAGCAGTAGTTACGGTGCAGCGTATTATGCGCCTCCACAACCGTATCAATACGCGCATGTGATGAATACGGGAAACGAAATGGAGCCTCAGCCAAGGCCGTACACGTATGAACCAGAATCGTATAATTCATCACAACCGTCAGATTCTTTTGTTTATTTTAGTGATGAAAATCCTAATGCGTGTAATGTCATGTGA
Protein sequence

>Msa0172760

MAASETQAEQHSQHLNYKTTVLKVSIHCAGCKRKVHKILQNIQGVQNIDIDLKQQKVIVTGNVNSDILIHKLTNKTGKHVELWPEPTESKKKKQPKPEKNKEKQSDSETENSEEIEIKQNSENNNNGTGKVDTSTSKNVQVNGNTAKSGNGSGDSKVNKPNEGSATGKTGVVHVQELKPEVRKQTVVLPAKPVAEKKVSVAVQFPNDDNEEPFEKTGSTGNTGGDSSGVKKKKKKGKGKVVNNNVEESVVNVEHFRDAPGTGGSGNRSNGQFQGQSSNFHGQVHSGSNLTNEVPPRHYINEQFHPPQYYGPPQSHFAAAPPVVTVSHHTAYPSSSSYGAAYYAPPQPYQYAHVMNTGNEMEPQPRPYTYEPESYNSSQPSDSFVYFSDENPNACNVM*